Carg27507-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGGTTGAAGACGATTTCAGTTTCCCCACCGCTTTAGAGCCTTACAGTCGCTGCGGCATCGATTCGCCGCCGCTCTGGCGCCTCTCTCCCACCGCATCGCCGATTTCTTACCGTCAAAAAACAGCCTCCAATCGGAGTTTCAGAGACGATCAGAAGAGCGATCGGTTTGCGTCGGTGAGATTCTCGGCGTCGTTGCAGAGGAGGAGGAGATTTTCGAGCGATGCGGCGATAGACGGCGAGGAGGAGGAGGAGGAGGTAGCGGAGGAGGAGGTAGCGGCGGAGAAGATGGATGTGCTTTGGGAGAATTTCAACGAGGAGTTGTCGAGGAGTGGGAGATCTAGGTTGATGAAAACGGCGGAAATGGAGGAGATTGAGATTGTGAAAGCGCGGCGGCGGATGGCGGAATTGAATCTGTCGGAGACTTCCGGCGCGGTGGCGACGAGGAGGAAGGCGACGGGGAAGACGGCGTTTGTTAAGGCTTTGAAGAAGCTTTTCTTGTTGCATAACAAATCCCGCCGGAATCTGCAAACTCGATCACGGTGA ATGGCGGTTGAAGACGATTTCAGTTTCCCCACCGCTTTAGAGCCTTACAGTCGCTGCGGCATCGATTCGCCGCCGCTCTGGCGCCTCTCTCCCACCGCATCGCCGATTTCTTACCGTCAAAAAACAGCCTCCAATCGGAGTTTCAGAGACGATCAGAAGAGCGATCGGTTTGCGTCGGTGAGATTCTCGGCGTCGTTGCAGAGGAGGAGGAGATTTTCGAGCGATGCGGCGATAGACGGCGAGGAGGAGGAGGAGGAGGTAGCGGAGGAGGAGGTAGCGGCGGAGAAGATGGATGTGCTTTGGGAGAATTTCAACGAGGAGTTGTCGAGGAGTGGGAGATCTAGGTTGATGAAAACGGCGGAAATGGAGGAGATTGAGATTGTGAAAGCGCGGCGGCGGATGGCGGAATTGAATCTGTCGGAGACTTCCGGCGCGGTGGCGACGAGGAGGAAGGCGACGGGGAAGACGGCGTTTGTTAAGGCTTTGAAGAAGCTTTTCTTGTTGCATAACAAATCCCGCCGGAATCTGCAAACTCGATCACGGTGA ATGGCGGTTGAAGACGATTTCAGTTTCCCCACCGCTTTAGAGCCTTACAGTCGCTGCGGCATCGATTCGCCGCCGCTCTGGCGCCTCTCTCCCACCGCATCGCCGATTTCTTACCGTCAAAAAACAGCCTCCAATCGGAGTTTCAGAGACGATCAGAAGAGCGATCGGTTTGCGTCGGTGAGATTCTCGGCGTCGTTGCAGAGGAGGAGGAGATTTTCGAGCGATGCGGCGATAGACGGCGAGGAGGAGGAGGAGGAGGTAGCGGAGGAGGAGGTAGCGGCGGAGAAGATGGATGTGCTTTGGGAGAATTTCAACGAGGAGTTGTCGAGGAGTGGGAGATCTAGGTTGATGAAAACGGCGGAAATGGAGGAGATTGAGATTGTGAAAGCGCGGCGGCGGATGGCGGAATTGAATCTGTCGGAGACTTCCGGCGCGGTGGCGACGAGGAGGAAGGCGACGGGGAAGACGGCGTTTGTTAAGGCTTTGAAGAAGCTTTTCTTGTTGCATAACAAATCCCGCCGGAATCTGCAAACTCGATCACGGTGA MAVEDDFSFPTALEPYSRCGIDSPPLWRLSPTASPISYRQKTASNRSFRDDQKSDRFASVRFSASLQRRRRFSSDAAIDGEEEEEEVAEEEVAAEKMDVLWENFNEELSRSGRSRLMKTAEMEEIEIVKARRRMAELNLSETSGAVATRRKATGKTAFVKALKKLFLLHNKSRRNLQTRSR
BLAST of Carg27507-RA vs. NCBI nr
Match: XP_022932537.1 (uncharacterized protein LOC111439032 [Cucurbita moschata]) HSP 1 Score: 274.6 bits (701), Expect = 2.4e-70 Identity = 174/181 (96.13%), Postives = 174/181 (96.13%), Query Frame = 0
BLAST of Carg27507-RA vs. NCBI nr
Match: XP_023536234.1 (uncharacterized protein LOC111797464 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 269.2 bits (687), Expect = 9.9e-69 Identity = 170/180 (94.44%), Postives = 172/180 (95.56%), Query Frame = 0
BLAST of Carg27507-RA vs. NCBI nr
Match: XP_022976943.1 (uncharacterized protein LOC111477161 [Cucurbita maxima]) HSP 1 Score: 266.2 bits (679), Expect = 8.4e-68 Identity = 164/181 (90.61%), Postives = 165/181 (91.16%), Query Frame = 0
BLAST of Carg27507-RA vs. NCBI nr
Match: XP_008461465.1 (PREDICTED: uncharacterized protein LOC103500054 isoform X1 [Cucumis melo]) HSP 1 Score: 213.4 bits (542), Expect = 6.4e-52 Identity = 147/182 (80.77%), Postives = 160/182 (87.91%), Query Frame = 0
BLAST of Carg27507-RA vs. NCBI nr
Match: XP_016902690.1 (PREDICTED: uncharacterized protein LOC103500054 isoform X2 [Cucumis melo]) HSP 1 Score: 213.4 bits (542), Expect = 6.4e-52 Identity = 145/182 (79.67%), Postives = 158/182 (86.81%), Query Frame = 0
BLAST of Carg27507-RA vs. TrEMBL
Match: tr|A0A1S4E3Y6|A0A1S4E3Y6_CUCME (uncharacterized protein LOC103500054 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500054 PE=4 SV=1) HSP 1 Score: 213.4 bits (542), Expect = 4.3e-52 Identity = 145/182 (79.67%), Postives = 158/182 (86.81%), Query Frame = 0
BLAST of Carg27507-RA vs. TrEMBL
Match: tr|A0A1S3CEP4|A0A1S3CEP4_CUCME (uncharacterized protein LOC103500054 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500054 PE=4 SV=1) HSP 1 Score: 213.4 bits (542), Expect = 4.3e-52 Identity = 147/182 (80.77%), Postives = 160/182 (87.91%), Query Frame = 0
BLAST of Carg27507-RA vs. TrEMBL
Match: tr|A0A0A0K672|A0A0A0K672_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G283910 PE=4 SV=1) HSP 1 Score: 208.0 bits (528), Expect = 1.8e-50 Identity = 123/182 (67.58%), Postives = 133/182 (73.08%), Query Frame = 0
BLAST of Carg27507-RA vs. TrEMBL
Match: tr|A0A061FJY8|A0A061FJY8_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_036336 PE=4 SV=1) HSP 1 Score: 76.3 bits (186), Expect = 8.1e-11 Identity = 60/170 (35.29%), Postives = 82/170 (48.24%), Query Frame = 0
BLAST of Carg27507-RA vs. TrEMBL
Match: tr|A0A1R3JR28|A0A1R3JR28_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_04633 PE=4 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 1.8e-10 Identity = 60/182 (32.97%), Postives = 80/182 (43.96%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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