Carg27001 (gene) Silver-seed gourd

Overview
NameCarg27001
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionDNA polymerase III polC-type
LocationCucurbita_argyrosperma_scaffold_374 : 772 .. 2565 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTAAATTTCTTTGTCCTTCACGTAAGTTGTAACTTGTTTCTTCCTAAGATCATTTGGGGCTTTGAACTCTGTTATTTCGTTCCTTATTTGATAATCAATCCGGTCTTTTACCTTCTTTGTTACCCGATTATCTACAGGTTGAAGACAACTGCTTCCAATGCAGGGGTTTTCTGTGTAGTTTTCCTCTTGTTGTGTTGTGATTTCAAATGATAACAGCTCCGATGTGCTTCTCAATCTTGCGAGTTCCCAAATTTGGAGTCCCCACTTTAGCTAATTTATGGAGGGAAAACTTCCATCCCTTGAACAGGAATTATGGTCATAGTTCTTGGTATGATCAGCTTGGTTTTAGGATCTATAACCTTGAAGGAGGGCAGGACAAGAGATGGACCAGAAAATCTATGTCCACAAAAGCAGGGAGGAAAGCAAAAACTGACCCGAGCAGTAAACCGAGCAATATCAGGAATGAAATCTTAGAGGAATCGGTTTCAACAAGCTGTACAGTTAGCATCAATAAGTCTGAGAAAAATGGAACTCAGAAGCTTCAATGTTGTAATATTCAAGAAACGATTGTTAAGGACAAGGAATTGGCTCGCCCGGTGACGGTTATAACCTTCGACATCGAAACAACAGGTTTTAGTCGAGAGCTCGACAGAATAGTGGAAATTGCACTTCAAGATCTCTCAGGAGGAGAAAATAGCACCTTCCAAACATTAATAAACCCAGAATGCTATATTCCAAATGCAGTTGTACATGGCATTACAAGCCGTATGGTCAGTCGACCCGACGTTCCAAGGTATCGACACGTTTGTTGTAATCTCATTTCTCAAACATTACCATTCAGCTCAGTGCTAGTTAAATATATAGACATATCTAAACATTTCTTGTTTATGTTCATATAGGATGAAGGAACTTATTCCAATCTTATTACAGTTTATCAAAAGCCGTCAGAAACCTGATGGATATGTATTATTGGTAGCTCATAATGCTCGTACATTCGACGTGCCCTTTTTACTCAAGGAGTTCAGCCGTTGCTCGGTCGACATTCCTCTAAATTGGCTATTTTTCGATAACATTCTTTTAGCCCGTCAGTTGATGAAATCCACAGGTTAGTTTTCGCTTTGCACATGTTATCTTGCTTTAGTTTCTCTATGGATAAAACGAACAATGTGACGTAATGTAATATCGTGATCAGATTCGAAGATTACGAAAATTTCGTTGCAAGCTCTTCGTGAGTATTACAATATTCCATTGGTGGGTTCAGCTCACCGTGCAATGTCGGACGTGAGGACATTGTCGCTGATTCTTCAGCGGCTTACTTTCGACCTCAAGCTAGGTATTCCTGATCTCATTGAAAGATCTTTTACTACTTCTGATCTGATTAATAAGAAGAAGAACTAGTGGGTTAAGTTATATGCAGAAATGAATCATAAGTTAGTGATGAAGCTGTGCTTTTGTTGTAATGTTATTTACTAATTGTAACTTCAGTTCATTCTTATTACCAAAATGTTGGGGCCATTTTTATTTATGGTCAACAGATTTGTCTTGATCTCCATGTTCTTCAAGAACTAATGCCTGAATTGGATTATCATGACAAATAAAATCTAGTTTTGTTTTAGGAGTTGTCTATGATGAACAGATGAAAAGAGGATCCTTGTTTTGTCTTGATGTTGTTGGGAATGGCTGAATTGAACTACTTTTTAAGGTTGTTGTGTCCCGGAATTATCTTAGGCCGTGTTTTTTTATAACGACCCAGATCCACCGCTAGTAGATATTGTTCTCTTTGGGCTTTTCCT

mRNA sequence

TTTAAATTTCTTTGTCCTTCACGTAAGTTGTAACTTGTTTCTTCCTAAGATCATTTGGGGCTTTGAACTCTGTTATTTCGTTCCTTATTTGATAATCAATCCGGTCTTTTACCTTCTTTGTTACCCGATTATCTACAGGTTGAAGACAACTGCTTCCAATGCAGGGGTTTTCTGTGTAGTTTTCCTCTTGTTGTGTTGTGATTTCAAATGATAACAGCTCCGATGTGCTTCTCAATCTTGCGAGTTCCCAAATTTGGAGTCCCCACTTTAGCTAATTTATGGAGGGAAAACTTCCATCCCTTGAACAGGAATTATGGTCATAGTTCTTGGTATGATCAGCTTGGTTTTAGGATCTATAACCTTGAAGGAGGGCAGGACAAGAGATGGACCAGAAAATCTATGTCCACAAAAGCAGGGAGGAAAGCAAAAACTGACCCGAGCAGTAAACCGAGCAATATCAGGAATGAAATCTTAGAGGAATCGGTTTCAACAAGCTGTACAGTTAGCATCAATAAGTCTGAGAAAAATGGAACTCAGAAGCTTCAATGTTGTAATATTCAAGAAACGATTGTTAAGGACAAGGAATTGGCTCGCCCGGTGACGGTTATAACCTTCGACATCGAAACAACAGGTTTTAGTCGAGAGCTCGACAGAATAGTGGAAATTGCACTTCAAGATCTCTCAGGAGGAGAAAATAGCACCTTCCAAACATTAATAAACCCAGAATGCTATATTCCAAATGCAGTTGTACATGGCATTACAAGCCGTATGGTCAGTCGACCCGACGTTCCAAGGATGAAGGAACTTATTCCAATCTTATTACAGTTTATCAAAAGCCGTCAGAAACCTGATGGATATGTATTATTGGTAGCTCATAATGCTCGTACATTCGACGTGCCCTTTTTACTCAAGGAGTTCAGCCGTTGCTCGGTCGACATTCCTCTAAATTGGCTATTTTTCGATAACATTCTTTTAGCCCGTCAGTTGATGAAATCCACAGATTCGAAGATTACGAAAATTTCGTTGCAAGCTCTTCGTGAGTATTACAATATTCCATTGGTGGGTTCAGCTCACCGTGCAATGTCGGACGTGAGGACATTGTCGCTGATTCTTCAGCGGCTTACTTTCGACCTCAAGCTAGGTATTCCTGATCTCATTGAAAGATCTTTTACTACTTCTGATCTGATTAATAAGAAGAAGAACTAGTGGGTTAAGTTATATGCAGAAATGAATCATAAGTTAGTGATGAAGCTGTGCTTTTGTTGTAATGTTATTTACTAATTGTAACTTCAGTTCATTCTTATTACCAAAATGTTGGGGCCATTTTTATTTATGGTCAACAGATTTGTCTTGATCTCCATGTTCTTCAAGAACTAATGCCTGAATTGGATTATCATGACAAATAAAATCTAGTTTTGTTTTAGGAGTTGTCTATGATGAACAGATGAAAAGAGGATCCTTGTTTTGTCTTGATGTTGTTGGGAATGGCTGAATTGAACTACTTTTTAAGGTTGTTGTGTCCCGGAATTATCTTAGGCCGTGTTTTTTTATAACGACCCAGATCCACCGCTAGTAGATATTGTTCTCTTTGGGCTTTTCCT

Coding sequence (CDS)

ATGATAACAGCTCCGATGTGCTTCTCAATCTTGCGAGTTCCCAAATTTGGAGTCCCCACTTTAGCTAATTTATGGAGGGAAAACTTCCATCCCTTGAACAGGAATTATGGTCATAGTTCTTGGTATGATCAGCTTGGTTTTAGGATCTATAACCTTGAAGGAGGGCAGGACAAGAGATGGACCAGAAAATCTATGTCCACAAAAGCAGGGAGGAAAGCAAAAACTGACCCGAGCAGTAAACCGAGCAATATCAGGAATGAAATCTTAGAGGAATCGGTTTCAACAAGCTGTACAGTTAGCATCAATAAGTCTGAGAAAAATGGAACTCAGAAGCTTCAATGTTGTAATATTCAAGAAACGATTGTTAAGGACAAGGAATTGGCTCGCCCGGTGACGGTTATAACCTTCGACATCGAAACAACAGGTTTTAGTCGAGAGCTCGACAGAATAGTGGAAATTGCACTTCAAGATCTCTCAGGAGGAGAAAATAGCACCTTCCAAACATTAATAAACCCAGAATGCTATATTCCAAATGCAGTTGTACATGGCATTACAAGCCGTATGGTCAGTCGACCCGACGTTCCAAGGATGAAGGAACTTATTCCAATCTTATTACAGTTTATCAAAAGCCGTCAGAAACCTGATGGATATGTATTATTGGTAGCTCATAATGCTCGTACATTCGACGTGCCCTTTTTACTCAAGGAGTTCAGCCGTTGCTCGGTCGACATTCCTCTAAATTGGCTATTTTTCGATAACATTCTTTTAGCCCGTCAGTTGATGAAATCCACAGATTCGAAGATTACGAAAATTTCGTTGCAAGCTCTTCGTGAGTATTACAATATTCCATTGGTGGGTTCAGCTCACCGTGCAATGTCGGACGTGAGGACATTGTCGCTGATTCTTCAGCGGCTTACTTTCGACCTCAAGCTAGGTATTCCTGATCTCATTGAAAGATCTTTTACTACTTCTGATCTGATTAATAAGAAGAAGAACTAG

Protein sequence

MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRIYNLEGGQDKRWTRKSMSTKAGRKAKTDPSSKPSNIRNEILEESVSTSCTVSINKSEKNGTQKLQCCNIQETIVKDKELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAVVHGITSRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIPLNWLFFDNILLARQLMKSTDSKITKISLQALREYYNIPLVGSAHRAMSDVRTLSLILQRLTFDLKLGIPDLIERSFTTSDLINKKKN
Homology
[Close]
BLAST of Carg27001 vs. NCBI nr
Match: XP_022961373.1 (exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita moschata] >XP_022961374.1 exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita moschata])

HSP 1 Score: 656.8 bits (1693), Expect = 4.0e-185
Identity = 331/332 (99.70%), Postives = 331/332 (99.70%), Query Frame = 0 

Query: 1   MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRIYNLEGGQDKRW 60
           MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFR YNLEGGQDKRW
Sbjct: 1   MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRTYNLEGGQDKRW 60

Query: 61  TRKSMSTKAGRKAKTDPSSKPSNIRNEILEESVSTSCTVSINKSEKNGTQKLQCCNIQET 120
           TRKSMSTKAGRKAKTDPSSKPSNIRNEILEESVSTSCTVSINKSEKNGTQKLQCCNIQET
Sbjct: 61  TRKSMSTKAGRKAKTDPSSKPSNIRNEILEESVSTSCTVSINKSEKNGTQKLQCCNIQET 120

Query: 121 IVKDKELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAV 180
           IVKDKELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAV
Sbjct: 121 IVKDKELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAV 180

Query: 181 VHGITSRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRC 240
           VHGITSRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRC
Sbjct: 181 VHGITSRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRC 240

Query: 241 SVDIPLNWLFFDNILLARQLMKSTDSKITKISLQALREYYNIPLVGSAHRAMSDVRTLSL 300
           SVDIPLNWLFFDNILLARQLMKSTDSKITKISLQALREYYNIPLVGSAHRAMSDVRTLSL
Sbjct: 241 SVDIPLNWLFFDNILLARQLMKSTDSKITKISLQALREYYNIPLVGSAHRAMSDVRTLSL 300

Query: 301 ILQRLTFDLKLGIPDLIERSFTTSDLINKKKN 333
           ILQRLTFDLKLGIPDLIERSFTTSDLINKKKN
Sbjct: 301 ILQRLTFDLKLGIPDLIERSFTTSDLINKKKN 332

[Close]
BLAST of Carg27001 vs. NCBI nr
Match: XP_023515555.1 (exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 652.5 bits (1682), Expect = 7.6e-184
Identity = 328/332 (98.80%), Postives = 330/332 (99.40%), Query Frame = 0 

Query: 1   MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRIYNLEGGQDKRW 60
           MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRIYNLEGGQ+KRW
Sbjct: 1   MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRIYNLEGGQNKRW 60

Query: 61  TRKSMSTKAGRKAKTDPSSKPSNIRNEILEESVSTSCTVSINKSEKNGTQKLQCCNIQET 120
           TRKSMSTKAGRKAKTDPSSKPSNIRNEILEESVSTSCT+SINKSEKNGTQKLQCCNIQET
Sbjct: 61  TRKSMSTKAGRKAKTDPSSKPSNIRNEILEESVSTSCTISINKSEKNGTQKLQCCNIQET 120

Query: 121 IVKDKELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAV 180
           I KDKELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAV
Sbjct: 121 ITKDKELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAV 180

Query: 181 VHGITSRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRC 240
           VHGITSRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRC
Sbjct: 181 VHGITSRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRC 240

Query: 241 SVDIPLNWLFFDNILLARQLMKSTDSKITKISLQALREYYNIPLVGSAHRAMSDVRTLSL 300
           SVDIPLNWLFFDNILLARQLMKSTDSKI KISLQALREYYNIPLVGSAHRAMSDVRTLSL
Sbjct: 241 SVDIPLNWLFFDNILLARQLMKSTDSKIKKISLQALREYYNIPLVGSAHRAMSDVRTLSL 300

Query: 301 ILQRLTFDLKLGIPDLIERSFTTSDLINKKKN 333
           ILQRLTFDLKLGIPDLIERSFTTSDLINKKKN
Sbjct: 301 ILQRLTFDLKLGIPDLIERSFTTSDLINKKKN 332

[Close]
BLAST of Carg27001 vs. NCBI nr
Match: XP_022968752.1 (exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita maxima] >XP_022968753.1 exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita maxima])

HSP 1 Score: 644.0 bits (1660), Expect = 2.7e-181
Identity = 324/331 (97.89%), Postives = 328/331 (99.09%), Query Frame = 0 

Query: 1   MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRIYNLEGGQDKRW 60
           MITA MCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRIYNLEGGQDKRW
Sbjct: 1   MITASMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRIYNLEGGQDKRW 60

Query: 61  TRKSMSTKAGRKAKTDPSSKPSNIRNEILEESVSTSCTVSINKSEKNGTQKLQCCNIQET 120
           TRKSM+TKAGRKAKT+PSSKPSNIRNEILEESVSTSCTVSINKSEK GTQKLQCCNIQET
Sbjct: 61  TRKSMTTKAGRKAKTNPSSKPSNIRNEILEESVSTSCTVSINKSEKYGTQKLQCCNIQET 120

Query: 121 IVKDKELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAV 180
           I+KDKELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAV
Sbjct: 121 IIKDKELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAV 180

Query: 181 VHGITSRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRC 240
           VHGITSRMVSRPDVPRMKELIPILLQF+KSRQKPDGYVLLVAHNAR FDVPFLLKEFSRC
Sbjct: 181 VHGITSRMVSRPDVPRMKELIPILLQFVKSRQKPDGYVLLVAHNARIFDVPFLLKEFSRC 240

Query: 241 SVDIPLNWLFFDNILLARQLMKSTDSKITKISLQALREYYNIPLVGSAHRAMSDVRTLSL 300
           SVDIPLNWLFFDNILLARQLMKSTDSKITKISLQALREYYNIPLVGSAHRAMSDVRTLSL
Sbjct: 241 SVDIPLNWLFFDNILLARQLMKSTDSKITKISLQALREYYNIPLVGSAHRAMSDVRTLSL 300

Query: 301 ILQRLTFDLKLGIPDLIERSFTTSDLINKKK 332
           ILQRLTFDLKLGIPDLIERSFTTSDLINKKK
Sbjct: 301 ILQRLTFDLKLGIPDLIERSFTTSDLINKKK 331

[Close]
BLAST of Carg27001 vs. NCBI nr
Match: XP_022135594.1 (exonuclease DPD1, chloroplastic/mitochondrial [Momordica charantia])

HSP 1 Score: 560.5 bits (1443), Expect = 3.9e-156
Identity = 280/332 (84.34%), Postives = 304/332 (91.57%), Query Frame = 0 

Query: 1   MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRIYNLEGGQDKRW 60
           MIT PMCFSILRVPKFGV TLAN WR NFHPLNRNYGHSSWYDQL FRIYNLEGGQ+KRW
Sbjct: 1   MITVPMCFSILRVPKFGVHTLANFWRTNFHPLNRNYGHSSWYDQLCFRIYNLEGGQNKRW 60

Query: 61  TRKSMSTKAGRKAKTDPSSKPSNIRNEILEESVSTSCTVSINKSEKNGTQKLQCCNIQET 120
           TRKS++TKAGRK K +PSSKPS+IRNEILE SVSTSCTVSINK+EK+ TQKLQ C+IQ+T
Sbjct: 61  TRKSITTKAGRKVKNNPSSKPSDIRNEILEGSVSTSCTVSINKTEKSETQKLQYCDIQQT 120

Query: 121 IVKDKELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAV 180
             K KEL RPVTVI FDIETTGFSR+ DRIVEIA QDLSGGENSTFQTLINPECYIPN++
Sbjct: 121 FTKKKELTRPVTVIAFDIETTGFSRKKDRIVEIAFQDLSGGENSTFQTLINPECYIPNSL 180

Query: 181 VHGITSRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRC 240
           VHGITSRMVSRPDVPRMK+LIPILLQF+ SRQKPDGY+LLVAHNARTFDVPFLL EFSRC
Sbjct: 181 VHGITSRMVSRPDVPRMKDLIPILLQFVLSRQKPDGYILLVAHNARTFDVPFLLNEFSRC 240

Query: 241 SVDIPLNWLFFDNILLARQLMKSTDSKITKISLQALREYYNIPLVGSAHRAMSDVRTLSL 300
           S DIP +WLF DN++LARQLM S+DSK++KISLQALREYY+IPLVGSAHRAMSDV +LSL
Sbjct: 241 SFDIPQDWLFLDNMILARQLMISSDSKLSKISLQALREYYSIPLVGSAHRAMSDVMSLSL 300

Query: 301 ILQRLTFDLKLGIPDLIERSFTTSDLINKKKN 333
           ILQRLTFDLKL IPDLIERSFT SDLI K K+
Sbjct: 301 ILQRLTFDLKLEIPDLIERSFTASDLIKKNKD 332

[Close]
BLAST of Carg27001 vs. NCBI nr
Match: XP_004135590.1 (PREDICTED: exonuclease DPD1, chloroplastic/mitochondrial [Cucumis sativus] >KGN66030.1 hypothetical protein Csa_1G569080 [Cucumis sativus])

HSP 1 Score: 514.6 bits (1324), Expect = 2.5e-142
Identity = 257/326 (78.83%), Postives = 286/326 (87.73%), Query Frame = 0 

Query: 6   MCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRIYNLEGGQDKRWTRKSM 65
           MC SI R PK+GVP LANLWRENFHPLNRN+GH+ WYDQL FRIYNLEGG++KRWTRKS+
Sbjct: 1   MCLSIFRFPKYGVPVLANLWRENFHPLNRNHGHNCWYDQLCFRIYNLEGGRNKRWTRKSI 60

Query: 66  STKAGRKAKTDPSSKPSNIRNEILEESVSTSCTVSINKSEKNGTQKLQCCNIQETIVKDK 125
           +TKAG KAKT+PSSKP+NIRNEIL+ES+  SCTV+INKSEK+ TQKLQ C+IQ TI+K K
Sbjct: 61  TTKAGEKAKTNPSSKPTNIRNEILQESMLASCTVNINKSEKSETQKLQYCDIQPTIIKSK 120

Query: 126 ELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAVVHGIT 185
           E A  VTVITFDIETTGFSR LDRIVEIA QDLSGGENSTFQTLINP+CYI N+ +HGI+
Sbjct: 121 EFAHLVTVITFDIETTGFSRNLDRIVEIAFQDLSGGENSTFQTLINPQCYITNSNIHGIS 180

Query: 186 SRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIP 245
           +RMV  P VPRM+ELIPI+LQF+KSRQKP GYVLLVAHNARTFDVPFLL EFSR SVDIP
Sbjct: 181 NRMVDSPSVPRMQELIPIILQFVKSRQKPGGYVLLVAHNARTFDVPFLLSEFSRYSVDIP 240

Query: 246 LNWLFFDNILLARQLMKSTDSKITKISLQALREYYNIPLVGSAHRAMSDVRTLSLILQRL 305
           LNWLFFD + LARQLMK +DSKITKI+LQAL EYY I L G AHRA+SDVR LS ILQRL
Sbjct: 241 LNWLFFDTMTLARQLMKLSDSKITKITLQALGEYYGIKLDGKAHRALSDVRLLSSILQRL 300

Query: 306 TFDLKLGIPDLIERSFTTSDLINKKK 332
           TFDLKL I DL+ER+FT  DLINKKK
Sbjct: 301 TFDLKLDISDLVERAFTPLDLINKKK 326

[Close]
BLAST of Carg27001 vs. TAIR10
Match: AT5G26940.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 241.1 bits (614), Expect = 9.6e-64
Identity = 140/323 (43.34%), Postives = 206/323 (63.78%), Query Frame = 0 

Query: 6   MCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRIYNLEGGQDKRWTRKSM 65
           MC SI +V +  + +  +   E  H   +N   SS    L  R  +++G    RW R+++
Sbjct: 1   MCISISQVSRLRIHSFGSSCCERVHGWIKN---SSSLKLLDVRASSVDG--KARWIRRNV 60

Query: 66  STKAGRKAKTDPSSKPSNIRNEILEESVSTSCTVSINKSEKNGTQKLQCCNIQETIVKDK 125
           ST       T   S+ SN ++ +L  +V  +  +     E++ T+     N+Q+ + +DK
Sbjct: 61  ST-------TTQGSR-SNTKSSVLGGTVPVTRII----DEESRTKVQPFGNLQQRLAQDK 120

Query: 126 ELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECY-IPNAVVHGI 185
           +L++ +TVI  D+ETTG  R+ +RI+EIA QD++GG  STFQTL+NP    I NA +HGI
Sbjct: 121 DLSKLLTVIVSDLETTGLHRKNERIIEIAAQDIAGGGYSTFQTLVNPGVVPITNAHIHGI 180

Query: 186 TSRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDI 245
            + MV RP+VPRM+ELIPI L++++SRQKP GYV+LVAHN ++FD  FL+ EF+RCS +I
Sbjct: 181 RNDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEI 240

Query: 246 PLNWLFFDNILLARQLMKSTDSKI-TKISLQALREYYNIPLVGSAHRAMSDVRTLSLILQ 305
           P NWL  D++ LAR+ MKS +  +    SL+AL +YY++   G AHRA+SDV  LS + Q
Sbjct: 241 PHNWLLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQ 300

Query: 306 RLTFDLKLGIPDLIERSFTTSDL 327
           +LT DLKL + DL+ R  T SD+
Sbjct: 301 KLTIDLKLSLSDLVLRCHTASDI 306

[Close]
BLAST of Carg27001 vs. Swiss-Prot
Match: sp|Q682U6|DPD1_ARATH (Exonuclease DPD1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=DPD1 PE=1 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 1.7e-62
Identity = 140/323 (43.34%), Postives = 206/323 (63.78%), Query Frame = 0 

Query: 6   MCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRIYNLEGGQDKRWTRKSM 65
           MC SI +V +  + +  +   E  H   +N   SS    L  R  +++G    RW R+++
Sbjct: 1   MCISISQVSRLRIHSFGSSCCERVHGWIKN---SSSLKLLDVRASSVDG--KARWIRRNV 60

Query: 66  STKAGRKAKTDPSSKPSNIRNEILEESVSTSCTVSINKSEKNGTQKLQCCNIQETIVKDK 125
           ST       T   S+ SN ++ +L  +V  +  +     E++ T+     N+Q+ + +DK
Sbjct: 61  ST-------TTQGSR-SNTKSSVLGGTVPVTRII----DEESRTKVQPFGNLQQRLAQDK 120

Query: 126 ELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECY-IPNAVVHGI 185
           +L++ +TVI  D+ETTG  R+ +RI+EIA QD++GG  STFQTL+NP    I NA +HGI
Sbjct: 121 DLSKLLTVIVSDLETTGLHRKNERIIEIAAQDIAGGGYSTFQTLVNPGVVPITNAHIHGI 180

Query: 186 TSRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDI 245
            + MV RP+VPRM+ELIPI L++++SRQKP GYV+LVAHN ++FD  FL+ EF+RCS +I
Sbjct: 181 RNDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEI 240

Query: 246 PLNWLFFDNILLARQLMKSTDSKI-TKISLQALREYYNIPLVGSAHRAMSDVRTLSLILQ 305
           P NWL  D++ LAR+ MKS +  +    SL+AL +YY++   G AHRA+SDV  LS + Q
Sbjct: 241 PHNWLLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQ 300

Query: 306 RLTFDLKLGIPDLIERSFTTSDL 327
           +LT DLKL + DL+ R  T SD+
Sbjct: 301 KLTIDLKLSLSDLVLRCHTASDI 306

[Close]
BLAST of Carg27001 vs. Swiss-Prot
Match: sp|Q895K2|DPO3_CLOTE (DNA polymerase III PolC-type OS=Clostridium tetani (strain Massachusetts / E88) OX=212717 GN=polC PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.3e-14
Identity = 65/200 (32.50%), Postives = 100/200 (50.00%), Query Frame = 0 

Query: 134 ITFDIETTGFSRELDRIVEI-ALQDLSGGENSTFQTLINPECYIPNAVVH--GITSRMVS 193
           + FDIETTGFS + D+I+EI A++   G     + T +NPE  IP  ++   GI   MV 
Sbjct: 414 VVFDIETTGFSNKNDKIIEIGAVKIKEGKVVDKYSTFVNPERIIPEKIIELTGIHDYMVK 473

Query: 194 RPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIPLNWLF 253
             D P+++E++P  + FI+         +LVAHNA  FDV F+ K      +       F
Sbjct: 474 --DAPKIEEVLPKFIDFIEDS-------ILVAHNA-NFDVSFIKKNCKDFGIH------F 533

Query: 254 FDNILLARQLMKSTDSKITKISLQALREYYNIPLVGSAHRAMSDVRTLSLILQRLTFDLK 313
            + IL    L K    ++ +  L  + ++  IPL+ + HRA+ D +T   IL +   DLK
Sbjct: 534 NNPILDTIPLCKFLYPELKRYKLNVVAKHLGIPLL-NHHRAVEDAKTTGDILLKAFEDLK 593

Query: 314 ----LGIPDLIERSFTTSDL 327
               + +  L E  F   D+
Sbjct: 594 DKEIMNLNMLNEEYFKNQDI 596

[Close]
BLAST of Carg27001 vs. Swiss-Prot
Match: sp|Q8XJR3|DPO3_CLOPE (DNA polymerase III PolC-type OS=Clostridium perfringens (strain 13 / Type A) OX=195102 GN=polC PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 6.9e-11
Identity = 57/173 (32.95%), Postives = 87/173 (50.29%), Query Frame = 0 

Query: 134 ITFDIETTGFSRELDRIVEIALQDLSGGE-NSTFQTLINPECYIPNAVVH--GITSRMVS 193
           + FDIETTGFS + D+I+EI    L  GE   +F T ++P+  IP  +     IT  MV+
Sbjct: 436 VVFDIETTGFSSKNDKIIEIGAVKLKDGEIVDSFSTFVDPKVNIPYKITELTSITQNMVN 495

Query: 194 RPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIPLNWLF 253
               P + E++P  ++F+       G  +LVAHNA  FDV F+ K      +   L    
Sbjct: 496 --GQPTIDEVLPKFMEFV-------GNSVLVAHNA-AFDVGFIKKNL--MDMGKTLKNPV 555

Query: 254 FDNILLARQLMKSTDSKITKISLQALREYYNIPLVGSAHRAMSDVRTLSLILQ 304
            D + LAR L       + K+ L  + ++  I L  + HRA+ D +  + IL+
Sbjct: 556 MDTVPLARYLYPD----LKKVKLNLVAKHLGISL-ENHHRAVDDAKATAEILK 591

[Close]
BLAST of Carg27001 vs. Swiss-Prot
Match: sp|Q8RA32|DPO3_CALS4 (DNA polymerase III PolC-type OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=polC PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.5e-10
Identity = 57/189 (30.16%), Postives = 94/189 (49.74%), Query Frame = 0 

Query: 134 ITFDIETTGFSRELDRIVEIALQDLSGGE-NSTFQTLINPECYIPNAV--VHGITSRMVS 193
           + FDIETTG S   D I+EI    +   +   TF+T +NP+  I + +  + GI   MV 
Sbjct: 389 VVFDIETTGLSNINDEIIEIGAVKIKNKKIVDTFETFVNPQIPISSFITKLTGIDESMVK 448

Query: 194 RPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIPLNWLF 253
             D P ++E++P  L+F K         +LVAHNA  FDV F+  +  +  + +    L 
Sbjct: 449 --DAPLIEEVLPKFLEFAKG-------AVLVAHNA-NFDVSFIKSKAKKLGLTVENTVL- 508

Query: 254 FDNILLARQLMKSTDSKITKISLQALREYYNIPLVGSAHRAMSDVR-TLSLILQRLTFDL 313
            D + L+R L +     +    L  L E++ + L+   HRA+ D + T  + ++ L    
Sbjct: 509 -DTLELSRHLYQD----LKNYKLDTLAEFFEVKLL-HHHRAVEDAKATAEIFIKMLEKLQ 560

Query: 314 KLGIPDLIE 319
           ++GI  + E
Sbjct: 569 EIGIKSVSE 560

[Close]
BLAST of Carg27001 vs. Swiss-Prot
Match: sp|Q8EQU6|DPO3_OCEIH (DNA polymerase III PolC-type OS=Oceanobacillus iheyensis (strain DSM 14371 / CIP 107618 / JCM 11309 / KCTC 3954 / HTE831) OX=221109 GN=polC PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.5e-08
Identity = 55/177 (31.07%), Postives = 85/177 (48.02%), Query Frame = 0 

Query: 132 TVITFDIETTGFSRELDRIVEIALQDLSGGE-NSTFQTLINPECYIPNAVVH--GITSRM 191
           T + FD+ETTG S   D I+E+A   + GGE    F++  NP   +    +   GIT  M
Sbjct: 413 TFVVFDVETTGLSAVYDTIIELAAVKIKGGEIVDRFESFANPHHALSQTTIDLTGITDDM 472

Query: 192 VSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIPLNW 251
           V+  D P + ++       +K      G  +LVAHNA +FD+ FL + F R   +   N 
Sbjct: 473 VN--DAPEVADV-------LKDFHTWMGNDILVAHNA-SFDMGFLNQGFQRIDYEKASNP 532

Query: 252 LFFDNILLARQLMKSTDSKITKISLQALREYYNIPLVGSAHRAMSDVRTLSLILQRL 306
           +  D + LAR L+     ++    L  L ++ +I L    HRA+ D      +L +L
Sbjct: 533 V-VDTLELARFLL----PELRNHRLNTLCKHLDIELT-QHHRAIYDAEATGYLLWKL 573

[Close]
BLAST of Carg27001 vs. TrEMBL
Match: tr|A0A0A0LVY3|A0A0A0LVY3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569080 PE=4 SV=1)

HSP 1 Score: 514.6 bits (1324), Expect = 1.6e-142
Identity = 257/326 (78.83%), Postives = 286/326 (87.73%), Query Frame = 0 

Query: 6   MCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRIYNLEGGQDKRWTRKSM 65
           MC SI R PK+GVP LANLWRENFHPLNRN+GH+ WYDQL FRIYNLEGG++KRWTRKS+
Sbjct: 1   MCLSIFRFPKYGVPVLANLWRENFHPLNRNHGHNCWYDQLCFRIYNLEGGRNKRWTRKSI 60

Query: 66  STKAGRKAKTDPSSKPSNIRNEILEESVSTSCTVSINKSEKNGTQKLQCCNIQETIVKDK 125
           +TKAG KAKT+PSSKP+NIRNEIL+ES+  SCTV+INKSEK+ TQKLQ C+IQ TI+K K
Sbjct: 61  TTKAGEKAKTNPSSKPTNIRNEILQESMLASCTVNINKSEKSETQKLQYCDIQPTIIKSK 120

Query: 126 ELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAVVHGIT 185
           E A  VTVITFDIETTGFSR LDRIVEIA QDLSGGENSTFQTLINP+CYI N+ +HGI+
Sbjct: 121 EFAHLVTVITFDIETTGFSRNLDRIVEIAFQDLSGGENSTFQTLINPQCYITNSNIHGIS 180

Query: 186 SRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIP 245
           +RMV  P VPRM+ELIPI+LQF+KSRQKP GYVLLVAHNARTFDVPFLL EFSR SVDIP
Sbjct: 181 NRMVDSPSVPRMQELIPIILQFVKSRQKPGGYVLLVAHNARTFDVPFLLSEFSRYSVDIP 240

Query: 246 LNWLFFDNILLARQLMKSTDSKITKISLQALREYYNIPLVGSAHRAMSDVRTLSLILQRL 305
           LNWLFFD + LARQLMK +DSKITKI+LQAL EYY I L G AHRA+SDVR LS ILQRL
Sbjct: 241 LNWLFFDTMTLARQLMKLSDSKITKITLQALGEYYGIKLDGKAHRALSDVRLLSSILQRL 300

Query: 306 TFDLKLGIPDLIERSFTTSDLINKKK 332
           TFDLKL I DL+ER+FT  DLINKKK
Sbjct: 301 TFDLKLDISDLVERAFTPLDLINKKK 326

[Close]
BLAST of Carg27001 vs. TrEMBL
Match: tr|A0A0N9LRH7|A0A0N9LRH7_CUCSA (Exonuclease DPD1 OS=Cucumis sativus OX=3659 GN=DPD1 PE=2 SV=1)

HSP 1 Score: 513.5 bits (1321), Expect = 3.7e-142
Identity = 257/326 (78.83%), Postives = 285/326 (87.42%), Query Frame = 0 

Query: 6   MCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRIYNLEGGQDKRWTRKSM 65
           MC SI R PK+GVP LANLWRENFHPLNRN+GH+ WYDQL FRIYNLEGG++KRWTRKS+
Sbjct: 1   MCLSIFRFPKYGVPVLANLWRENFHPLNRNHGHNCWYDQLCFRIYNLEGGRNKRWTRKSI 60

Query: 66  STKAGRKAKTDPSSKPSNIRNEILEESVSTSCTVSINKSEKNGTQKLQCCNIQETIVKDK 125
           +TKAG KAKT+PSSKP+NIRNEIL+ESV  SCTV+INKSEK+ TQKLQ C+IQ TI+K K
Sbjct: 61  TTKAGEKAKTNPSSKPTNIRNEILQESVLASCTVNINKSEKSETQKLQYCDIQPTIIKSK 120

Query: 126 ELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAVVHGIT 185
           E A  VTVITFDIETTGFSR LDRIVEIA QDLSGGENSTFQTLINP+CYI N+ +HGI+
Sbjct: 121 EFAHLVTVITFDIETTGFSRNLDRIVEIAFQDLSGGENSTFQTLINPQCYITNSNIHGIS 180

Query: 186 SRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIP 245
           +RMV  P VP M+ELIPI+LQF+KSRQKP GYVLLVAHNARTFDVPFLL EFSR SVDIP
Sbjct: 181 NRMVDSPSVPSMQELIPIILQFVKSRQKPGGYVLLVAHNARTFDVPFLLSEFSRYSVDIP 240

Query: 246 LNWLFFDNILLARQLMKSTDSKITKISLQALREYYNIPLVGSAHRAMSDVRTLSLILQRL 305
           LNWLFFD + LARQLMK +DSKITKI+LQAL EYY I L G AHRA+SDVR LS ILQRL
Sbjct: 241 LNWLFFDTMTLARQLMKLSDSKITKITLQALGEYYGIKLDGKAHRALSDVRLLSSILQRL 300

Query: 306 TFDLKLGIPDLIERSFTTSDLINKKK 332
           TFDLKL I DL+ER+FT  DLINKKK
Sbjct: 301 TFDLKLDISDLVERAFTPLDLINKKK 326

[Close]
BLAST of Carg27001 vs. TrEMBL
Match: tr|A0A1S4DY73|A0A1S4DY73_CUCME (exonuclease DPD1, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC103492132 PE=4 SV=1)

HSP 1 Score: 507.3 bits (1305), Expect = 2.6e-140
Identity = 252/326 (77.30%), Postives = 285/326 (87.42%), Query Frame = 0 

Query: 6   MCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRIYNLEGGQDKRWTRKSM 65
           MCFSI R PKFGVP LANLWRENFHPLNRN+GHS WYDQL FRIYNLEGGQ+KRWTRKS+
Sbjct: 1   MCFSIFRFPKFGVPILANLWRENFHPLNRNHGHSCWYDQLCFRIYNLEGGQNKRWTRKSI 60

Query: 66  STKAGRKAKTDPSSKPSNIRNEILEESVSTSCTVSINKSEKNGTQKLQCCNIQETIVKDK 125
           +TKAG KAKT+PSSKP+NI NEIL+ES+S SCTV++NKSEK+GTQKLQ C+IQ TI+K K
Sbjct: 61  TTKAGGKAKTNPSSKPTNITNEILQESMSASCTVNVNKSEKSGTQKLQYCDIQPTIIKSK 120

Query: 126 ELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAVVHGIT 185
           E   PVTVITFDIETTGFSR LDRIVEIA QDLSGGENSTFQTLI+P+CYI N+ +HGIT
Sbjct: 121 EFIHPVTVITFDIETTGFSRNLDRIVEIAFQDLSGGENSTFQTLIDPQCYITNSSIHGIT 180

Query: 186 SRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIP 245
           + MV+   VPRM+ELIPI+LQF+KSRQKP GYVLLVAHNARTFDVPFLL EFSR S+DIP
Sbjct: 181 NNMVASCGVPRMQELIPIILQFVKSRQKPGGYVLLVAHNARTFDVPFLLHEFSRYSIDIP 240

Query: 246 LNWLFFDNILLARQLMKSTDSKITKISLQALREYYNIPLVGSAHRAMSDVRTLSLILQRL 305
            +WLF D + LARQLMK +DSKITKISL+AL EYY I + G AHRA+ DV +LSLILQRL
Sbjct: 241 QDWLFLDTMTLARQLMKLSDSKITKISLEALCEYYGIEVDGEAHRALPDVISLSLILQRL 300

Query: 306 TFDLKLGIPDLIERSFTTSDLINKKK 332
           TFDLKL + DL+ER+FT  DLINKKK
Sbjct: 301 TFDLKLDVSDLVERAFTPLDLINKKK 326

[Close]
BLAST of Carg27001 vs. TrEMBL
Match: tr|A0A1Q3CGS5|A0A1Q3CGS5_CEPFO (RNase_T domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_22915 PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 4.7e-105
Identity = 201/334 (60.18%), Postives = 260/334 (77.84%), Query Frame = 0 

Query: 1   MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRIYNLEGGQDKRW 60
           M T PMC SIL+ P+    +LAN + EN+H L+ + GH+S +  L  + Y L+G   K W
Sbjct: 19  MRTVPMCISILQFPRGRFCSLANFYWENYHGLSGSGGHNSSFKLLSSQNYGLKGRHSKGW 78

Query: 61  TRKSMSTKAGRKAKTDPSSKPSNIRNEILEESVSTSCTVSINKSEKNGTQKLQCCNIQET 120
           +R+++STK   ++KT    K ++I+NE L+ ++STS T+++N++E     K+Q C+IQ  
Sbjct: 79  SRRTVSTKTEGRSKTTQGGKLTDIKNEFLDGAISTSATINLNRTEIIDFPKVQLCDIQHN 138

Query: 121 IVKDKELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAV 180
           I + K+LA  +TVI FDIETTG SRE +RI+EIALQDL GG NSTFQTL+NPE Y+PNA 
Sbjct: 139 ITEMKDLASVMTVIVFDIETTGLSRENERIIEIALQDLLGGNNSTFQTLVNPERYVPNAH 198

Query: 181 VHGITSRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRC 240
           VHGIT+ MV RPD+PRM++LIPILLQ+++SRQKP+G++L VAHNARTFDVPFL+KEFSRC
Sbjct: 199 VHGITTNMVCRPDIPRMEDLIPILLQYVESRQKPEGFILWVAHNARTFDVPFLIKEFSRC 258

Query: 241 SVDIPLNWLFFDNILLARQLMKS--TDSKI-TKISLQALREYYNIPLVGSAHRAMSDVRT 300
           S +IP NWLF D + LAR+L+KS  T SKI ++ SLQALRE+Y IPL+GSAHRA+SDV T
Sbjct: 259 SYEIPPNWLFVDTLSLARELIKSGGTGSKIPSRTSLQALREHYRIPLIGSAHRALSDVNT 318

Query: 301 LSLILQRLTFDLKLGIPDLIERSFTTSDLINKKK 332
           LSLILQRLTFDLKL +  L+ERSFT SDLIN KK
Sbjct: 319 LSLILQRLTFDLKLALSGLVERSFTASDLINLKK 352

[Close]
BLAST of Carg27001 vs. TrEMBL
Match: tr|A0A2P4LY42|A0A2P4LY42_QUESU (Exonuclease dpd1, chloroplastic/mitochondrial OS=Quercus suber OX=58331 GN=CFP56_15725 PE=4 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 3.3e-103
Identity = 198/331 (59.82%), Postives = 248/331 (74.92%), Query Frame = 0 

Query: 1   MITAPMCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRIYNLEGGQDKRW 60
           M T  MCFSIL+VP   +PTLA  WRE+FH L+R   +SS +  LG  IY LE G +++W
Sbjct: 1   MRTGSMCFSILQVPGCRIPTLATFWRESFHSLSRTVKNSSSFRPLGSNIYGLERGYNRKW 60

Query: 61  TRKSMSTKAGRKAKTDPSSKPSNIRNEILEESVSTSCTVSINKSEKNGTQKLQCCNIQET 120
           TR+ + T A  + KT   SKPSNI +EIL+  VS S T S+NK+E +  Q ++ C+I++ 
Sbjct: 61  TRRPVFTNAEGRNKTTQQSKPSNIGHEILDGLVSKSDTFSVNKTEISQLQNIEYCDIRQK 120

Query: 121 IVKDKELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAV 180
           I ++KELA  VTVI FDIETTGFSRE +RI+EIAL+DL GGENSTFQTL+NP+ ++PN+ 
Sbjct: 121 ISENKELASLVTVIVFDIETTGFSRENERIIEIALRDLEGGENSTFQTLVNPQRFVPNSH 180

Query: 181 VHGITSRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRC 240
           VHGIT+RMV++PDVPRM++LIPILLQF+KSRQKP GYV+L AHNAR+FDVPFL  EF+RC
Sbjct: 181 VHGITTRMVNKPDVPRMEDLIPILLQFVKSRQKPGGYVVLAAHNARSFDVPFLRSEFTRC 240

Query: 241 SVDIPLNWLFFDNILLARQLMKSTDSKITKISLQALREYYNIPLVGSAHRAMSDVRTLSL 300
             + P NWLF D + LAR++MKS   K T ISLQALR+ + IPL G AHRAM+DV  LS+
Sbjct: 241 KAEFPSNWLFVDTLTLAREMMKSKGEKSTSISLQALRQSFEIPLTGKAHRAMADVDLLSI 300

Query: 301 ILQRLTFDLKLGIPDLIERSFTTSDLINKKK 332
           IL RLTF LK  I DLI +SF  SD    KK
Sbjct: 301 ILPRLTFVLKWSISDLIMKSFLPSDSPKSKK 331

The following BLAST results are available for this feature:
BLAST of Carg27001 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022961373.14.0e-18599.70exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita moschata] >XP_022961374... [more]
XP_023515555.17.6e-18498.80exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo][more]
XP_022968752.12.7e-18197.89exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita maxima] >XP_022968753.1... [more]
XP_022135594.13.9e-15684.34exonuclease DPD1, chloroplastic/mitochondrial [Momordica charantia][more]
XP_004135590.12.5e-14278.83PREDICTED: exonuclease DPD1, chloroplastic/mitochondrial [Cucumis sativus] >KGN6... [more]
BLAST of Carg27001 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G26940.19.6e-6443.34Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
BLAST of Carg27001 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q682U6|DPD1_ARATH1.7e-6243.34Exonuclease DPD1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN... [more]
sp|Q895K2|DPO3_CLOTE2.3e-1432.50DNA polymerase III PolC-type OS=Clostridium tetani (strain Massachusetts / E88) ... [more]
sp|Q8XJR3|DPO3_CLOPE6.9e-1132.95DNA polymerase III PolC-type OS=Clostridium perfringens (strain 13 / Type A) OX=... [more]
sp|Q8RA32|DPO3_CALS41.5e-1030.16DNA polymerase III PolC-type OS=Caldanaerobacter subterraneus subsp. tengcongens... [more]
sp|Q8EQU6|DPO3_OCEIH2.5e-0831.07DNA polymerase III PolC-type OS=Oceanobacillus iheyensis (strain DSM 14371 / CIP... [more]
BLAST of Carg27001 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LVY3|A0A0A0LVY3_CUCSA1.6e-14278.83Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G569080 PE=4 SV=1[more]
tr|A0A0N9LRH7|A0A0N9LRH7_CUCSA3.7e-14278.83Exonuclease DPD1 OS=Cucumis sativus OX=3659 GN=DPD1 PE=2 SV=1[more]
tr|A0A1S4DY73|A0A1S4DY73_CUCME2.6e-14077.30exonuclease DPD1, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC1034... [more]
tr|A0A1Q3CGS5|A0A1Q3CGS5_CEPFO4.7e-10560.18RNase_T domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_... [more]
tr|A0A2P4LY42|A0A2P4LY42_QUESU3.3e-10359.82Exonuclease dpd1, chloroplastic/mitochondrial OS=Quercus suber OX=58331 GN=CFP56... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
IPR036397RNaseH_sf
IPR013520Exonuclease_RNaseT/DNA_pol3
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg27001-RACarg27001-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013520Exonuclease, RNase T/DNA polymerase IIISMARTSM00479exoiiienduscoord: 132..311
e-value: 1.1E-28
score: 111.3
IPR013520Exonuclease, RNase T/DNA polymerase IIIPFAMPF00929RNase_Tcoord: 135..298
e-value: 6.2E-20
score: 72.3
IPR036397Ribonuclease H superfamilyGENE3DG3DSA:3.30.420.10coord: 131..310
e-value: 9.1E-41
score: 141.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..75
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..86
NoneNo IPR availablePANTHERPTHR13058:SF18SUBFAMILY NOT NAMEDcoord: 103..326
NoneNo IPR availablePANTHERPTHR13058THREE PRIME REPAIR EXONUCLEASE 1, 2coord: 103..326
NoneNo IPR availableCDDcd06127DEDDhcoord: 136..303
e-value: 3.44418E-39
score: 136.662
IPR012337Ribonuclease H-like superfamilySUPERFAMILYSSF53098Ribonuclease H-likecoord: 129..306