Carg25717 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25717
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	homeobox-leucine zipper protein ATHB-7
Location	Cucurbita_argyrosperma_scaffold_341 : 111648 .. 112026 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAAATGATGATGATGCCGAATATTCTCCTCCAGAATCCATGGCAGAGGCTTTTGGCATGAGAAAAAAAAGCATGAACAGAAGAAGGTTCAGTGAAGAGCAGATCAAATCATTGGAGTCAATTTTCGAGTCTGAGTCAAGGCTTGAGCCCAGAAAGAAGTTGCAGCTAGCGGGAGAGCTGGGGTTGCATCCACGCCAGGTTGCATTCCAACTATGGTAGTGGCACAAAGGAAGCCTATCTTGGACTAGACGAGCCCCAGTTCAGGGAACCTGCTCAGGGCTCCTTGATATCAACACCAAATTGGAGCAATTTAGAGTCTGAAGGGCTTTTCAGTCAGTCCAATACCAATGGCCAGTGGTGGGACTTCTGGTCGTGA

mRNA sequence

ATGCTAAATGATGATGATGCCGAATATTCTCCTCCAGAATCCATGGCAGAGGCTTTTGGCATGAGAAAAAAAAGCATGAACAGAAGAAGGTTCAGTGAAGAGCAGATCAAATCATTGGAGTCAATTTTCGAGTCTGAGTCAAGGCTTGAGCCCAGAAAGAAGTTGCAGCTAGCGGGAGAGCTGGGGTTGCATCCACGCCAGGGCTCCTTGATATCAACACCAAATTGGAGCAATTTAGAGTCTGAAGGGCTTTTCAGTCAGTCCAATACCAATGGCCAGTGGTGGGACTTCTGGTCGTGA

Coding sequence (CDS)

ATGCTAAATGATGATGATGCCGAATATTCTCCTCCAGAATCCATGGCAGAGGCTTTTGGCATGAGAAAAAAAAGCATGAACAGAAGAAGGTTCAGTGAAGAGCAGATCAAATCATTGGAGTCAATTTTCGAGTCTGAGTCAAGGCTTGAGCCCAGAAAGAAGTTGCAGCTAGCGGGAGAGCTGGGGTTGCATCCACGCCAGGGCTCCTTGATATCAACACCAAATTGGAGCAATTTAGAGTCTGAAGGGCTTTTCAGTCAGTCCAATACCAATGGCCAGTGGTGGGACTTCTGGTCGTGA

Protein sequence

MLNDDDAEYSPPESMAEAFGMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGELGLHPRQGSLISTPNWSNLESEGLFSQSNTNGQWWDFWS

Homology

[Close]

BLAST of Carg25717 vs. NCBI nr
Match: XP_022924402.1 (homeobox-leucine zipper protein ATHB-7 [Cucurbita moschata])

HSP 1 Score: 145.2 bits (365), Expect = 1.2e-31
Identity = 99/231 (42.86%), Postives = 99/231 (42.86%), Query Frame = 0


Query: 1   MLNDDDAEYSPPESMAEAFGMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGE 60
           MLNDDDAEYSPPESMAEAFGMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGE
Sbjct: 1   MLNDDDAEYSPPESMAEAFGMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGE 60

Query: 61  LGLHPR------------------------------------------------------ 100
           LGLHPR                                                      
Sbjct: 61  LGLHPRQVAIWFQNKRARWKSKQLERDYSVLRANYNTLVSRFEALKKEKQALAIQLQKLN 120

[Close]

BLAST of Carg25717 vs. NCBI nr
Match: XP_023527384.1 (homeobox-leucine zipper protein ATHB-12 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 145.2 bits (365), Expect = 1.2e-31
Identity = 99/231 (42.86%), Postives = 99/231 (42.86%), Query Frame = 0


Query: 1   MLNDDDAEYSPPESMAEAFGMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGE 60
           MLNDDDAEYSPPESMAEAFGMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGE
Sbjct: 1   MLNDDDAEYSPPESMAEAFGMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGE 60

Query: 61  LGLHPR------------------------------------------------------ 100
           LGLHPR                                                      
Sbjct: 61  LGLHPRQVAIWFQNKRARWKSKQLERDYSVLRANYNTLVSRFEALKKEKQALAIQLQKLN 120

[Close]

BLAST of Carg25717 vs. NCBI nr
Match: XP_022979311.1 (homeobox-leucine zipper protein ATHB-7 [Cucurbita maxima])

HSP 1 Score: 143.7 bits (361), Expect = 3.4e-31
Identity = 98/231 (42.42%), Postives = 98/231 (42.42%), Query Frame = 0


Query: 1   MLNDDDAEYSPPESMAEAFGMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGE 60
           MLNDDDAEYSPPESMAEAFGMRKK MNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGE
Sbjct: 1   MLNDDDAEYSPPESMAEAFGMRKKGMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGE 60

Query: 61  LGLHPR------------------------------------------------------ 100
           LGLHPR                                                      
Sbjct: 61  LGLHPRQVAIWFQNKRARWKSKQLEQDYSVLRANYNTLVSRFEALKKEKQALAIQLQKLN 120

[Close]

BLAST of Carg25717 vs. NCBI nr
Match: XP_004133792.1 (PREDICTED: homeobox-leucine zipper protein ATHB-12 [Cucumis sativus] >KGN56390.1 hypothetical protein Csa_3G119240 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 2.3e-27
Identity = 94/231 (40.69%), Postives = 96/231 (41.56%), Query Frame = 0


Query: 1   MLNDDDAEYSPPESMAEAFGMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGE 60
           MLN +DAEYSPP SMAEAF MRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGE
Sbjct: 1   MLN-EDAEYSPPASMAEAFAMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGE 60

Query: 61  LGLHPR------------------------------------------------------ 100
           LGLHPR                                                      
Sbjct: 61  LGLHPRQVAIWFQNKRARWKSKQLERDYSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

[Close]

BLAST of Carg25717 vs. NCBI nr
Match: XP_008437846.1 (PREDICTED: homeobox-leucine zipper protein ATHB-7 [Cucumis melo])

HSP 1 Score: 125.2 bits (313), Expect = 1.3e-25
Identity = 91/225 (40.44%), Postives = 94/225 (41.78%), Query Frame = 0


Query: 1   MLNDDDAEYSPPESMAEAFGMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGE 60
           MLN +DAEYSP  SMAEAF MRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGE
Sbjct: 1   MLN-EDAEYSPQASMAEAFAMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGE 60

Query: 61  LGLHPRQ----------------------------------------------------- 100
           LGLHPRQ                                                     
Sbjct: 61  LGLHPRQVAIWFQNKRARWKSKQLERDYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

[Close]

BLAST of Carg25717 vs. TAIR10
Match: AT2G46680.1 (homeobox 7)

HSP 1 Score: 71.2 bits (173), Expect = 3.9e-13
Identity = 42/70 (60.00%), Postives = 48/70 (68.57%), Query Frame = 0


Query: 5  DDAEYSPPESMAEAFGMRKK-------SMNRRRFSEEQIKSLESIFESESRLEPRKKLQL 64
          +  EYSP    AE F   KK         N+RRFS+EQIKSLE +FESE+RLEPRKK+QL
Sbjct: 3  EGGEYSPAMMSAEPFLTMKKMKKSNHNKNNQRRFSDEQIKSLEMMFESETRLEPRKKVQL 62

Query: 65 AGELGLHPRQ 68
          A ELGL PRQ
Sbjct: 63 ARELGLQPRQ 72

[Close]

BLAST of Carg25717 vs. TAIR10
Match: AT3G61890.1 (homeobox 12)

HSP 1 Score: 69.3 bits (168), Expect = 1.5e-12
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 23 KKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGELGLHPRQ 68
          KKS N++RFSEEQIKSLE IFESE+RLEPRKK+Q+A ELGL PRQ
Sbjct: 26 KKSNNQKRFSEEQIKSLELIFESETRLEPRKKVQVARELGLQPRQ 70

[Close]

BLAST of Carg25717 vs. TAIR10
Match: AT2G22430.1 (homeobox protein 6)

HSP 1 Score: 48.9 bits (115), Expect = 2.1e-06
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 13  ESMAEAFGMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGELGLHPRQ 68
           E++ E  G    S  +RR S  Q+K+LE  FE E++LEP +K++LA ELGL PRQ
Sbjct: 48  EAIVEERGHVGLSEKKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQPRQ 102

[Close]

BLAST of Carg25717 vs. TAIR10
Match: AT4G40060.1 (homeobox protein 16)

HSP 1 Score: 46.6 bits (109), Expect = 1.0e-05
Identity = 23/43 (53.49%), Postives = 31/43 (72.09%), Query Frame = 0


Query: 25 SMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGELGLHPRQ 68
          S  +RR   +Q+K+LE  FE E++LEP +K +LA ELGL PRQ
Sbjct: 57 SEKKRRLKVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQ 99

[Close]

BLAST of Carg25717 vs. TAIR10
Match: AT5G65310.1 (homeobox protein 5)

HSP 1 Score: 46.6 bits (109), Expect = 1.0e-05
Identity = 22/40 (55.00%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 28  RRRFSEEQIKSLESIFESESRLEPRKKLQLAGELGLHPRQ 68
           +RR   EQ+K+LE  FE +++LEP +K++LA ELGL PRQ
Sbjct: 73  KRRLGVEQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQ 112

[Close]

BLAST of Carg25717 vs. Swiss-Prot
Match: sp|P46897|ATHB7_ARATH (Homeobox-leucine zipper protein ATHB-7 OS=Arabidopsis thaliana OX=3702 GN=ATHB-7 PE=1 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 7.1e-12
Identity = 42/70 (60.00%), Postives = 48/70 (68.57%), Query Frame = 0


Query: 5  DDAEYSPPESMAEAFGMRKK-------SMNRRRFSEEQIKSLESIFESESRLEPRKKLQL 64
          +  EYSP    AE F   KK         N+RRFS+EQIKSLE +FESE+RLEPRKK+QL
Sbjct: 3  EGGEYSPAMMSAEPFLTMKKMKKSNHNKNNQRRFSDEQIKSLEMMFESETRLEPRKKVQL 62

Query: 65 AGELGLHPRQ 68
          A ELGL PRQ
Sbjct: 63 ARELGLQPRQ 72

[Close]

BLAST of Carg25717 vs. Swiss-Prot
Match: sp|Q9M276|ATB12_ARATH (Homeobox-leucine zipper protein ATHB-12 OS=Arabidopsis thaliana OX=3702 GN=ATHB-12 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.7e-11
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 23 KKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGELGLHPRQ 68
          KKS N++RFSEEQIKSLE IFESE+RLEPRKK+Q+A ELGL PRQ
Sbjct: 26 KKSNNQKRFSEEQIKSLELIFESETRLEPRKKVQVARELGLQPRQ 70

[Close]

BLAST of Carg25717 vs. Swiss-Prot
Match: sp|Q9XH35|HOX6_ORYSI (Homeobox-leucine zipper protein HOX6 OS=Oryza sativa subsp. indica OX=39946 GN=HOX6 PE=2 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 6.8e-07
Identity = 27/36 (75.00%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 32 SEEQIKSLESIFESESRLEPRKKLQLAGELGLHPRQ 68
          SEEQIKSLES+F ++++LEPR+KLQLA ELGL PRQ
Sbjct: 35 SEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQ 70

[Close]

BLAST of Carg25717 vs. Swiss-Prot
Match: sp|Q651Z5|HOX6_ORYSJ (Homeobox-leucine zipper protein HOX6 OS=Oryza sativa subsp. japonica OX=39947 GN=HOX6 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 6.8e-07
Identity = 27/36 (75.00%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 32 SEEQIKSLESIFESESRLEPRKKLQLAGELGLHPRQ 68
          SEEQIKSLES+F ++++LEPR+KLQLA ELGL PRQ
Sbjct: 35 SEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQ 70

[Close]

BLAST of Carg25717 vs. Swiss-Prot
Match: sp|P46668|ATHB6_ARATH (Homeobox-leucine zipper protein ATHB-6 OS=Arabidopsis thaliana OX=3702 GN=ATHB-6 PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 3.8e-05
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 13  ESMAEAFGMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGELGLHPRQ 68
           E++ E  G    S  +RR S  Q+K+LE  FE E++LEP +K++LA ELGL PRQ
Sbjct: 48  EAIVEERGHVGLSEKKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQPRQ 102

[Close]

BLAST of Carg25717 vs. TrEMBL
Match: tr|A0A0A0L317|A0A0A0L317_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119240 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.5e-27
Identity = 94/231 (40.69%), Postives = 96/231 (41.56%), Query Frame = 0


Query: 1   MLNDDDAEYSPPESMAEAFGMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGE 60
           MLN +DAEYSPP SMAEAF MRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGE
Sbjct: 1   MLN-EDAEYSPPASMAEAFAMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGE 60

Query: 61  LGLHPR------------------------------------------------------ 100
           LGLHPR                                                      
Sbjct: 61  LGLHPRQVAIWFQNKRARWKSKQLERDYSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

[Close]

BLAST of Carg25717 vs. TrEMBL
Match: tr|A0A1S3AUY7|A0A1S3AUY7_CUCME (homeobox-leucine zipper protein ATHB-7 OS=Cucumis melo OX=3656 GN=LOC103483152 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 8.3e-26
Identity = 91/225 (40.44%), Postives = 94/225 (41.78%), Query Frame = 0


Query: 1   MLNDDDAEYSPPESMAEAFGMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGE 60
           MLN +DAEYSP  SMAEAF MRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGE
Sbjct: 1   MLN-EDAEYSPQASMAEAFAMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAGE 60

Query: 61  LGLHPRQ----------------------------------------------------- 100
           LGLHPRQ                                                     
Sbjct: 61  LGLHPRQVAIWFQNKRARWKSKQLERDYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

[Close]

BLAST of Carg25717 vs. TrEMBL
Match: tr|A0A2C9WR28|A0A2C9WR28_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G242300 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.0e-12
Identity = 46/69 (66.67%), Postives = 53/69 (76.81%), Query Frame = 0


Query: 5  DDAEYSP----PESMAEAFG--MRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLA 64
          D+AEYSP    P S  +      +KK+ N+RRFS+EQIKSLES+FESESRLEPRKKLQLA
Sbjct: 4  DEAEYSPSTEDPYSSIDTLNTTRKKKNRNKRRFSDEQIKSLESMFESESRLEPRKKLQLA 63

Query: 65 GELGLHPRQ 68
           ELGL PRQ
Sbjct: 64 KELGLQPRQ 72

[Close]

BLAST of Carg25717 vs. TrEMBL
Match: tr|A0A1R3KNH4|A0A1R3KNH4_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_06263 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.2e-11
Identity = 45/68 (66.18%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 5  DDAEYS-----PPESMAEAFGMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLAG 64
          D  EYS     P  SM E    +KK+ N+RRFS+EQIKSLES+FESESRLEPRKKLQ+A 
Sbjct: 3  DGEEYSQEMAEPFSSMNEVTTKKKKNKNKRRFSDEQIKSLESMFESESRLEPRKKLQVAR 62

Query: 65 ELGLHPRQ 68
          ELGL PRQ
Sbjct: 63 ELGLQPRQ 70

[Close]

BLAST of Carg25717 vs. TrEMBL
Match: tr|A0A2C9VSJ4|A0A2C9VSJ4_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G018700 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.2e-11
Identity = 46/69 (66.67%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 5  DDAEYSP----PESMAE--AFGMRKKSMNRRRFSEEQIKSLESIFESESRLEPRKKLQLA 64
          D+A+YSP    P S  +  A   +KK+MN+RRFS+EQIKSLES+FESESRLE RKKLQLA
Sbjct: 4  DEAQYSPSTQEPFSSIDTLATPRKKKNMNKRRFSDEQIKSLESMFESESRLEARKKLQLA 63

Query: 65 GELGLHPRQ 68
           ELGL PRQ
Sbjct: 64 NELGLQPRQ 72

The following BLAST results are available for this feature:

BLAST of Carg25717 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022924402.1	1.2e-31	42.86	homeobox-leucine zipper protein ATHB-7 [Cucurbita moschata]	[more]
XP_023527384.1	1.2e-31	42.86	homeobox-leucine zipper protein ATHB-12 [Cucurbita pepo subsp. pepo]	[more]
XP_022979311.1	3.4e-31	42.42	homeobox-leucine zipper protein ATHB-7 [Cucurbita maxima]	[more]
XP_004133792.1	2.3e-27	40.69	PREDICTED: homeobox-leucine zipper protein ATHB-12 [Cucumis sativus] >KGN56390.1...	[more]
XP_008437846.1	1.3e-25	40.44	PREDICTED: homeobox-leucine zipper protein ATHB-7 [Cucumis melo]	[more]

BLAST of Carg25717 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G46680.1	3.9e-13	60.00	homeobox 7	[more]
AT3G61890.1	1.5e-12	80.00	homeobox 12	[more]
AT2G22430.1	2.1e-06	49.09	homeobox protein 6	[more]
AT4G40060.1	1.0e-05	53.49	homeobox protein 16	[more]
AT5G65310.1	1.0e-05	55.00	homeobox protein 5	[more]

BLAST of Carg25717 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P46897\|ATHB7_ARATH	7.1e-12	60.00	Homeobox-leucine zipper protein ATHB-7 OS=Arabidopsis thaliana OX=3702 GN=ATHB-7...	[more]
sp\|Q9M276\|ATB12_ARATH	2.7e-11	80.00	Homeobox-leucine zipper protein ATHB-12 OS=Arabidopsis thaliana OX=3702 GN=ATHB-...	[more]
sp\|Q9XH35\|HOX6_ORYSI	6.8e-07	75.00	Homeobox-leucine zipper protein HOX6 OS=Oryza sativa subsp. indica OX=39946 GN=H...	[more]
sp\|Q651Z5\|HOX6_ORYSJ	6.8e-07	75.00	Homeobox-leucine zipper protein HOX6 OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
sp\|P46668\|ATHB6_ARATH	3.8e-05	49.09	Homeobox-leucine zipper protein ATHB-6 OS=Arabidopsis thaliana OX=3702 GN=ATHB-6...	[more]

BLAST of Carg25717 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L317\|A0A0A0L317_CUCSA	1.5e-27	40.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119240 PE=4 SV=1	[more]
tr\|A0A1S3AUY7\|A0A1S3AUY7_CUCME	8.3e-26	40.44	homeobox-leucine zipper protein ATHB-7 OS=Cucumis melo OX=3656 GN=LOC103483152 P...	[more]
tr\|A0A2C9WR28\|A0A2C9WR28_MANES	4.0e-12	66.67	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G242300 PE=4 SV=...	[more]
tr\|A0A1R3KNH4\|A0A1R3KNH4_9ROSI	1.2e-11	66.18	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_06263 PE=4 SV=1	[more]
tr\|A0A2C9VSJ4\|A0A2C9VSJ4_MANES	1.2e-11	66.67	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G018700 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf
IPR001356	Homeobox_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25717-RA	Carg25717-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 20..90 e-value: 2.6E-8 score: 35.4
None	No IPR available	PANTHER	PTHR24326	FAMILY NOT NAMED	coord: 14..67
None	No IPR available	PANTHER	PTHR24326:SF346	SUBFAMILY NOT NAMED	coord: 14..67
IPR001356	Homeobox domain	PFAM	PF00046	Homeobox	coord: 27..67 e-value: 1.8E-6 score: 27.6
IPR001356	Homeobox domain	PROSITE	PS50071	HOMEOBOX_2	coord: 22..67 score: 8.6
IPR001356	Homeobox domain	CDD	cd00086	homeodomain	coord: 28..67 e-value: 2.81301E-5 score: 36.4525
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	SSF46689	Homeodomain-like	coord: 11..67

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25717	Cla021121	Watermelon (97103) v1	carwmB0122
Carg25717	Csa3G119240	Cucumber (Chinese Long) v2	carcuB0132
Carg25717	MELO3C005992	Melon (DHL92) v3.5.1	carmeB0128
Carg25717	ClCG05G000530	Watermelon (Charleston Gray)	carwcgB0122
Carg25717	CSPI03G07600	Wild cucumber (PI 183967)	carcpiB0137
Carg25717	Cucsa.259560	Cucumber (Gy14) v1	carcgyB0148
Carg25717	CmaCh14G021320	Cucurbita maxima (Rimu)	carcmaB0162
Carg25717	CmoCh14G021960	Cucurbita moschata (Rifu)	carcmoB0170
Carg25717	Lsi05G021630	Bottle gourd (USVL1VR-Ls)	carlsiB110
Carg25717	CsGy3G007760	Cucumber (Gy14) v2	carcgybB0131
Carg25717	MELO3C005992.2	Melon (DHL92) v3.6.1	carmedB0132
Carg25717	CsaV3_3G007750	Cucumber (Chinese Long) v3	carcucB0141
Carg25717	Cla97C05G080560	Watermelon (97103) v2	carwmbB0130
Carg25717	Bhi01G000395	Wax gourd	carwgoB0153

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25717	Silver-seed gourd	carcarB146
Carg25717	Cucurbita maxima (Rimu)	carcmaB0163
Carg25717	Cucurbita maxima (Rimu)	carcmaB0164
Carg25717	Cucurbita moschata (Rifu)	carcmoB0171
Carg25717	Cucurbita pepo (Zucchini)	carcpeB0179
Carg25717	Cucurbita pepo (Zucchini)	carcpeB0180
Carg25717	Wax gourd	carwgoB0152