Carg25525 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25525
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	small EDRK-rich factor 2-like
Location	Cucurbita_argyrosperma_scaffold_302 : 35181 .. 35857 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGATGATTTTAGGCAACGAAATAGGTTAGAGTTAATGGAGTTTATATATCGCGATTTTGTTGTAGATTTTGTGGTTTTATGTTTGTTTTGTCTTTAACTGAAGCGAACGCGGAAACCAGAGAGATCGAGATCGAGAAAGGGCTCAAGCTAGGGCTGGAAGCAAGACCAAGCAACCGAGAAACGACGGCTTGACGCCTGAACAGCGACGCGAAAGGTTTCGTTCCTCTCTCTTAGTTATCAAAATTCGTCTTAAGTAACTTTTATGAGCTTGATTTTCAAAAATTGACAACAAAAATTAATTAGTTACCAAAAGAAGTCTAATTGGAACAGAATCTGTTTTGGAGTGAGAATTTGGGAAGTTGAAAGGATGGAGTTGTATTTGTGTTCAGGGATTCAAAAGCTCTTCAGGAGAAGACGGCGAGAAAAGCTGCAATGGCTGCCGGAGGAATCAACGCTGGCGACGGAGGTAAAATTAAGTAACTGCAGATTCGATTTGGAGTAAATAGGAGAAGATTTATGGTAAAATCCATCCATCATGTGGATTCCTTTGCATTAGAACAAAGTTTGACTCTGCTTTTGAATGGTTATTTTTGTAGTTTTTGCTGGGCTTCAAATGCTTGTTCTCTCTGCAAACTTTTTCATATTTGAATGAAAATGATGTCAATTTCTTGC

mRNA sequence

ATGATCGATGATTTTAGGCAACGAAATAGCGAACGCGGAAACCAGAGAGATCGAGATCGAGAAAGGGCTCAAGCTAGGGCTGGAAGCAAGACCAAGCAACCGAGAAACGACGGCTTGACGCCTGAACAGCGACGCGAAAGGGATTCAAAAGCTCTTCAGGAGAAGACGGCGAGAAAAGCTGCAATGGCTGCCGGAGGAATCAACGCTGGCGACGGAGGTAAAATTAAGTAACTGCAGATTCGATTTGGAGTAAATAGGAGAAGATTTATGGTAAAATCCATCCATCATGTGGATTCCTTTGCATTAGAACAAAGTTTGACTCTGCTTTTGAATGGTTATTTTTGTAGTTTTTGCTGGGCTTCAAATGCTTGTTCTCTCTGCAAACTTTTTCATATTTGAATGAAAATGATGTCAATTTCTTGC

Coding sequence (CDS)

ATGATCGATGATTTTAGGCAACGAAATAGCGAACGCGGAAACCAGAGAGATCGAGATCGAGAAAGGGCTCAAGCTAGGGCTGGAAGCAAGACCAAGCAACCGAGAAACGACGGCTTGACGCCTGAACAGCGACGCGAAAGGGATTCAAAAGCTCTTCAGGAGAAGACGGCGAGAAAAGCTGCAATGGCTGCCGGAGGAATCAACGCTGGCGACGGAGGTAAAATTAAGTAA

Protein sequence

MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKAAMAAGGINAGDGGKIK

Homology

[Close]

BLAST of Carg25525 vs. NCBI nr
Match: XP_022953785.1 (putative SERF-like protein [Cucurbita moschata])

HSP 1 Score: 102.8 bits (255), Expect = 5.1e-19
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 1  MIDDFRQRNSERGNXXXXXXXXXXXXXXXXXXQPRNDGLTPEQRRERDSKALQEKTARKA 60
          MIDDFRQRNSERGNXXXXXXXXXXXXXXXXXXQPRNDGLTPEQRRERD+KALQEKTARKA
Sbjct: 1  MIDDFRQRNSERGNXXXXXXXXXXXXXXXXXXQPRNDGLTPEQRRERDAKALQEKTARKA 60

Query: 61 AMAAGGINAGDGGKIK 77
          AMAAGGINAG GGKIK
Sbjct: 61 AMAAGGINAGGGGKIK 76

[Close]

BLAST of Carg25525 vs. NCBI nr
Match: XP_023547529.1 (putative SERF-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 100.5 bits (249), Expect = 2.6e-18
Identity = 72/76 (94.74%), Postives = 73/76 (96.05%), Query Frame = 0


Query: 1  MIDDFRQRNSERGNXXXXXXXXXXXXXXXXXXQPRNDGLTPEQRRERDSKALQEKTARKA 60
          MIDDFRQR SERGN XXXXXXXXXXXXXXXXXQPRNDGLTPEQRRERD+KALQEKTARKA
Sbjct: 1  MIDDFRQRTSERGNQXXXXXXXXXXXXXXXXXQPRNDGLTPEQRRERDAKALQEKTARKA 60

Query: 61 AMAAGGINAGDGGKIK 77
          AMAAGGINAG GGKIK
Sbjct: 61 AMAAGGINAGGGGKIK 76

[Close]

BLAST of Carg25525 vs. NCBI nr
Match: XP_022991972.1 (putative SERF-like protein [Cucurbita maxima])

HSP 1 Score: 98.2 bits (243), Expect = 1.3e-17
Identity = 72/76 (94.74%), Postives = 73/76 (96.05%), Query Frame = 0


Query: 1  MIDDFRQRNSERGNXXXXXXXXXXXXXXXXXXQPRNDGLTPEQRRERDSKALQEKTARKA 60
          MIDDFRQRNSERGNXXXXXXXXXXXXXXXXXX PRNDG TPEQRRERD+KALQEKTARKA
Sbjct: 1  MIDDFRQRNSERGNXXXXXXXXXXXXXXXXXXXPRNDGSTPEQRRERDAKALQEKTARKA 60

Query: 61 AMAAGGINAGDGGKIK 77
          AMAAGGINAG GGKIK
Sbjct: 61 AMAAGGINAGGGGKIK 76

[Close]

BLAST of Carg25525 vs. NCBI nr
Match: XP_024933440.1 (putative SERF-like protein, partial [Ziziphus jujuba])

HSP 1 Score: 70.9 bits (172), Expect = 2.2e-09
Identity = 43/75 (57.33%), Postives = 47/75 (62.67%), Query Frame = 0


Query: 1  MIDDFRQRNSERGNXXXXXXXXXXXXXXXXXXQPRNDGLTPEQRRERDSKALQEKTARKA 60
          +I + R   SERGN                  QP+NDGLTPEQRRERD+KALQEKTARKA
Sbjct: 2  LISELRTSISERGNQRDKDRERAQARAGNKRKQPKNDGLTPEQRRERDAKALQEKTARKA 61

Query: 61 AMAAGGINA-GDGGK 75
          A  AGG NA G GGK
Sbjct: 62 AQGAGGNNAVGVGGK 76

[Close]

BLAST of Carg25525 vs. NCBI nr
Match: BAT97150.1 (hypothetical protein VIGAN_09051700 [Vigna angularis var. angularis])

HSP 1 Score: 65.5 bits (158), Expect = 9.1e-08
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 33 QPRNDGLTPEQRRERDSKALQEKTARKAAMAAGGINAGDG 73
          QPRNDGLTPEQRRERD+KALQEK A+KAA AAGG NAG G
Sbjct: 24 QPRNDGLTPEQRRERDAKALQEKAAKKAAQAAGGNNAGVG 63

[Close]

BLAST of Carg25525 vs. TrEMBL
Match: tr|A0A0S3SW56|A0A0S3SW56_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.09G051700 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.0e-08
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 33 QPRNDGLTPEQRRERDSKALQEKTARKAAMAAGGINAGDG 73
          QPRNDGLTPEQRRERD+KALQEK A+KAA AAGG NAG G
Sbjct: 24 QPRNDGLTPEQRRERDAKALQEKAAKKAAQAAGGNNAGVG 63

[Close]

BLAST of Carg25525 vs. TrEMBL
Match: tr|A0A1J7HDZ9|A0A1J7HDZ9_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_12781 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 32/42 (76.19%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 35 RNDGLTPEQRRERDSKALQEKTARKAAMAAGGINAGDGGKIK 77
          + DGLTPEQRRERD+KALQEKTA+KAA AAGG NAG  G  K
Sbjct: 28 KEDGLTPEQRRERDAKALQEKTAKKAAQAAGGSNAGGSGSKK 69

[Close]

BLAST of Carg25525 vs. TrEMBL
Match: tr|A0A2P5DBZ5|A0A2P5DBZ5_PARAD (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_078410 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 41/60 (68.33%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 11 ERGNXXXXXXXXXXXXXXXXXXQPRNDGLTPEQRRERDSKALQEKTARKAAMAAGGINAG 70
          ERGN    XXXXXXX        P+NDGLTPEQRRERD+KALQEK ARKAA A GG N G
Sbjct: 1  ERGNQRERXXXXXXXRAGQKPKNPKNDGLTPEQRRERDAKALQEKAARKAAQAGGGSNGG 60

[Close]

BLAST of Carg25525 vs. TrEMBL
Match: tr|W9SEN9|W9SEN9_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_003043 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.6e-06
Identity = 53/63 (84.13%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 10  SERGNXXXXXXXXXXXXXXXXXXQPRNDGLTPEQRRERDSKALQEKTARKAAMAAGGINA 69
           SERGNXXXXXXXXXXXXXXXXXX  +NDGLTPEQRRERD+KALQEK ARKAA A GG NA
Sbjct: 138 SERGNXXXXXXXXXXXXXXXXXXXSKNDGLTPEQRRERDAKALQEKAARKAAQAGGGNNA 197

Query: 70  GDG 73
             G
Sbjct: 198 VGG 200

[Close]

BLAST of Carg25525 vs. TrEMBL
Match: tr|B9RWH2|B9RWH2_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1019480 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 9.6e-06
Identity = 30/40 (75.00%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 35 RNDGLTPEQRRERDSKALQEKTARKAAMAAGGINAGDGGK 75
          ++DGLTPEQRRERD+KALQEKTA+KAA AAGG ++G  GK
Sbjct: 56 KDDGLTPEQRRERDAKALQEKTAKKAAQAAGGESSGGKGK 95

The following BLAST results are available for this feature:

BLAST of Carg25525 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953785.1	5.1e-19	97.37	putative SERF-like protein [Cucurbita moschata]	[more]
XP_023547529.1	2.6e-18	94.74	putative SERF-like protein [Cucurbita pepo subsp. pepo]	[more]
XP_022991972.1	1.3e-17	94.74	putative SERF-like protein [Cucurbita maxima]	[more]
XP_024933440.1	2.2e-09	57.33	putative SERF-like protein, partial [Ziziphus jujuba]	[more]
BAT97150.1	9.1e-08	85.00	hypothetical protein VIGAN_09051700 [Vigna angularis var. angularis]	[more]

BLAST of Carg25525 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg25525 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg25525 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0S3SW56\|A0A0S3SW56_PHAAN	6.0e-08	85.00	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.09G...	[more]
tr\|A0A1J7HDZ9\|A0A1J7HDZ9_LUPAN	1.1e-06	76.19	Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_12781 PE=4 S...	[more]
tr\|A0A2P5DBZ5\|A0A2P5DBZ5_PARAD	1.1e-06	68.33	Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]
tr\|W9SEN9\|W9SEN9_9ROSA	5.6e-06	84.13	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_003043 PE=4 SV=1	[more]
tr\|B9RWH2\|B9RWH2_RICCO	9.6e-06	75.00	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1019480 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007513	Uncharacterised_SERF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25525-RA	Carg25525-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007513	Uncharacterised protein family SERF	PFAM	PF04419	4F5	coord: 12..45 e-value: 1.4E-9 score: 38.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	PANTHER	PTHR13596	SMALL EDRK-RICH FACTOR 1	coord: 10..74
None	No IPR available	PANTHER	PTHR13596:SF5	SUBFAMILY NOT NAMED	coord: 10..74

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25525	MELO3C021034	Melon (DHL92) v3.5.1	carmeB0434
Carg25525	CmaCh17G012590	Cucurbita maxima (Rimu)	carcmaB0591
Carg25525	MELO3C021034.2	Melon (DHL92) v3.6.1	carmedB0436
Carg25525	Cla97C09G171710	Watermelon (97103) v2	carwmbB0449

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25525	Cucumber (Gy14) v2	carcgybB0434
Carg25525	Cucumber (Gy14) v1	carcgyB0492
Carg25525	Cucurbita moschata (Rifu)	carcmoB0576
Carg25525	Cucurbita pepo (Zucchini)	carcpeB0597
Carg25525	Wild cucumber (PI 183967)	carcpiB0463
Carg25525	Cucumber (Chinese Long) v2	carcuB0458
Carg25525	Cucumber (Chinese Long) v3	carcucB0459
Carg25525	Bottle gourd (USVL1VR-Ls)	carlsiB386
Carg25525	Watermelon (Charleston Gray)	carwcgB0418
Carg25525	Watermelon (97103) v1	carwmB0422