Carg25525-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGATCGATGATTTTAGGCAACGAAATAGGTTAGAGTTAATGGAGTTTATATATCGCGATTTTGTTGTAGATTTTGTGGTTTTATGTTTGTTTTGTCTTTAACTGAAGCGAACGCGGAAACCAGAGAGATCGAGATCGAGAAAGGGCTCAAGCTAGGGCTGGAAGCAAGACCAAGCAACCGAGAAACGACGGCTTGACGCCTGAACAGCGACGCGAAAGGTTTCGTTCCTCTCTCTTAGTTATCAAAATTCGTCTTAAGTAACTTTTATGAGCTTGATTTTCAAAAATTGACAACAAAAATTAATTAGTTACCAAAAGAAGTCTAATTGGAACAGAATCTGTTTTGGAGTGAGAATTTGGGAAGTTGAAAGGATGGAGTTGTATTTGTGTTCAGGGATTCAAAAGCTCTTCAGGAGAAGACGGCGAGAAAAGCTGCAATGGCTGCCGGAGGAATCAACGCTGGCGACGGAGGTAAAATTAAGTAACTGCAGATTCGATTTGGAGTAAATAGGAGAAGATTTATGGTAAAATCCATCCATCATGTGGATTCCTTTGCATTAGAACAAAGTTTGACTCTGCTTTTGAATGGTTATTTTTGTAGTTTTTGCTGGGCTTCAAATGCTTGTTCTCTCTGCAAACTTTTTCATATTTGAATGAAAATGATGTCAATTTCTTGC ATGATCGATGATTTTAGGCAACGAAATAGCGAACGCGGAAACCAGAGAGATCGAGATCGAGAAAGGGCTCAAGCTAGGGCTGGAAGCAAGACCAAGCAACCGAGAAACGACGGCTTGACGCCTGAACAGCGACGCGAAAGGGATTCAAAAGCTCTTCAGGAGAAGACGGCGAGAAAAGCTGCAATGGCTGCCGGAGGAATCAACGCTGGCGACGGAGGTAAAATTAAGTAACTGCAGATTCGATTTGGAGTAAATAGGAGAAGATTTATGGTAAAATCCATCCATCATGTGGATTCCTTTGCATTAGAACAAAGTTTGACTCTGCTTTTGAATGGTTATTTTTGTAGTTTTTGCTGGGCTTCAAATGCTTGTTCTCTCTGCAAACTTTTTCATATTTGAATGAAAATGATGTCAATTTCTTGC ATGATCGATGATTTTAGGCAACGAAATAGCGAACGCGGAAACCAGAGAGATCGAGATCGAGAAAGGGCTCAAGCTAGGGCTGGAAGCAAGACCAAGCAACCGAGAAACGACGGCTTGACGCCTGAACAGCGACGCGAAAGGGATTCAAAAGCTCTTCAGGAGAAGACGGCGAGAAAAGCTGCAATGGCTGCCGGAGGAATCAACGCTGGCGACGGAGGTAAAATTAAGTAA MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKAAMAAGGINAGDGGKIK
BLAST of Carg25525-RA vs. NCBI nr
Match: XP_022953785.1 (putative SERF-like protein [Cucurbita moschata]) HSP 1 Score: 102.8 bits (255), Expect = 5.1e-19 Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 0
BLAST of Carg25525-RA vs. NCBI nr
Match: XP_023547529.1 (putative SERF-like protein [Cucurbita pepo subsp. pepo]) HSP 1 Score: 100.5 bits (249), Expect = 2.6e-18 Identity = 72/76 (94.74%), Postives = 73/76 (96.05%), Query Frame = 0
BLAST of Carg25525-RA vs. NCBI nr
Match: XP_022991972.1 (putative SERF-like protein [Cucurbita maxima]) HSP 1 Score: 98.2 bits (243), Expect = 1.3e-17 Identity = 72/76 (94.74%), Postives = 73/76 (96.05%), Query Frame = 0
BLAST of Carg25525-RA vs. NCBI nr
Match: XP_024933440.1 (putative SERF-like protein, partial [Ziziphus jujuba]) HSP 1 Score: 70.9 bits (172), Expect = 2.2e-09 Identity = 43/75 (57.33%), Postives = 47/75 (62.67%), Query Frame = 0
BLAST of Carg25525-RA vs. NCBI nr
Match: BAT97150.1 (hypothetical protein VIGAN_09051700 [Vigna angularis var. angularis]) HSP 1 Score: 65.5 bits (158), Expect = 9.1e-08 Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 0
BLAST of Carg25525-RA vs. TrEMBL
Match: tr|A0A0S3SW56|A0A0S3SW56_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.09G051700 PE=4 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 6.0e-08 Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 0
BLAST of Carg25525-RA vs. TrEMBL
Match: tr|A0A1J7HDZ9|A0A1J7HDZ9_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_12781 PE=4 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06 Identity = 32/42 (76.19%), Postives = 35/42 (83.33%), Query Frame = 0
BLAST of Carg25525-RA vs. TrEMBL
Match: tr|A0A2P5DBZ5|A0A2P5DBZ5_PARAD (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_078410 PE=4 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06 Identity = 41/60 (68.33%), Postives = 43/60 (71.67%), Query Frame = 0
BLAST of Carg25525-RA vs. TrEMBL
Match: tr|W9SEN9|W9SEN9_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_003043 PE=4 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 5.6e-06 Identity = 53/63 (84.13%), Postives = 55/63 (87.30%), Query Frame = 0
BLAST of Carg25525-RA vs. TrEMBL
Match: tr|B9RWH2|B9RWH2_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1019480 PE=4 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 9.6e-06 Identity = 30/40 (75.00%), Postives = 36/40 (90.00%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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