CmaCh17G012590 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh17G012590
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Uncharacterised protein family SERF
Location	Cma_Chr17 : 8590325 .. 8593042 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAGAGGAGGAGTAGAATCAGAGGATTTTTGTAATTTTGTTTTTGAAATTTTCTTTGTTGTGATTTCTTCAAATCCTGCTGATGATCGATGATTTTAGGCAACGAAATAGGTTAGAGTTAATAAAGTTTACATAGAGCGACTTTGTCGTAGATTTTGTGGTTTTATGTTTGTTTGTCTTTAACTGAAGCGAACGCGGAAACCAGAGAGATCGAGATCGAGAAAGGGCTCAAGCTAGGGCTGGAAGCAAGACCAAGCAACCGAGAAACGACGGCTCGACGCCTGAACAGCGACGCGAAAGGTTCCATTTCTCTTTCTTAGTTATCAAAATTCATCTTAAGTAACATTTATGAGCTTGATTTTCAAAAATTGACAACAAAAATTAATTAGTTACCAAAAGAATCTGTTTTGGAGTGAGAATTTGGGAAGTCGTTCTTTGATATTGAATGAATGGAGCTGTATTTGTGTTCAGGGATGCAAAAGCTCTTCAGGAGAAGACGGCGAGAAAAGCTGCAATGGCTGCCGGAGGAATCAACGCTGGCGGCGGAGGTAAAATTAAGTAACTGCAGATTCGATTTGGAGTAAGTAGGAGAAGATTTATGGTAAAATCCATCCATTACTTGGATTCCTTTGCATTAGAACGAGTTTGACTCTGCTTTCGAATGGTTATTTTTGTAGTTTTTGCTGGGCTTCAAATGCTTGTTCTCTCTTCCAACTTATTCATATTTGAATGAAAATGATGTCAAATGGCCACTTTTTATCATAAATTTATTATGATACTTCGTTGAGATTTGTGTCAATTTACTTTCGATGAGTGTAAACATTGATGATTGAACGCCCAATGATATTGGGGCTAGAGCACATGCCTGATTTGCCACAAGGCAAGACTCCATAACTCAGCAAACAACAAGAATGTGAGTTGGTCACGTTTTAAAAAAAGTTGTCCATGCTATGGTACCAAGATTTTTTTTAGTATAAGATATGGTGATCAACTATTCGCACAAAGTGTCTAGATAATCCGTAGAATTTTAAATTTTAGATAAAATGACGATCATAATTAGAATAAATTGGGTGTAAAACTGAGACAACTTACAATCCATTCTCAATTTCAAGAAAGATGGGGTTTTGAACAAATGTAATTTGATAAAGTATTTACTTAAATCCAAGAGCAAACTTGAACAATTGGAACTTATGAAATTTCCTCAAATTACAGAAATTGGACTTGAAGTAGATCAAAGTTACTTCTGATAGCCATTGACAGACACCAATTCTGCAGCATTAGATCATTGGGAGTGGAATTAAAATATAATTCAGTTCATAGATCTGAAGATAAGAATAAACAAAATGGCTTCAAACTAGTAACTAAAGATCAAAAGAAAATAAATAATGCTCATCATTTGGGCAGTAAAAATGGAACAGTTAGCTGTCTGAAACAATGTTTCAAGAAATGGCTTCCTCACCAGCATTGGCAAAAACCCATCAAAGCACAACCAATCCAAATGAACATCAGTCAAAGAGTCGGTAGAACAAAACATAAAGAGCTTTGAATCCTTTGTACAAACCAAAGGCCAAACCCTAAAGAAACAGAGTAAATGCCACAAAGCACCAAAGTCATTGTGATTGTTTCTTACAGAAACACTTCACGGCTTGTTGGCAGTTGGCCTGAGACCTGGTAAATGTAAATCACACATCGCAGATTCCAATCCTTTTCAGTAGAAAAGATGGTTTCTAATATGCATTACAATTGTTTTCTAAATCACTTAAGAAGAGGTGTTTGACTTCATGAGTGAAGTTTGTGTAGCTCAGGATTATGGAGTTAGAATTTATGCCCGTACTTCAAACTGAAACTCGCCATTTATACTACATACAATCTTTTACAGATCGTAATTCTAGAACCATATGAAAGCCATTCAATCCCAAACTTCAGTGTATTTCGTTTCTTTGGACAATTTAAACACACTAAACAGATTCGAAGTCCTCATGCTTGAGTTAACTATAACTGTGAGCAAAACTATTTCCTAGACGTCTCATATCTAAAATGAACGGAAATTTTTACAATGCTCACTGCTGTGCAGCCGCATCGAACTTGCTAAATAAAAATGAATTAGAAGAGATAAGAAAAAGAAAATGACATCTTAAAGAGACTACAGGTTAGAGAATGTTGCAGCCGAGGGGTACAGAGAAGGGTTCTGCTAGACTAAGCAAAATAAATGGATCGGCACTGAAGCTTGTTGCATTATAAAATTGGGTACACCATTACATAATATGTTACTTCTACAGATGCACATTGACTGATAGATGGTTAATTTAAAAGGCACTACTGACAATGCAGACGCCAGAAACCTAATATTCACAAAAATTTCCAAGGAGCATTTGCTCTCAGAAAGGATTTCTACCCTCTTAATCGTTATTAATGTCAATACATGCACTAATCTATCAACTCCAAAAGGAATGAGACCCTCTAATAAAAGGACGGGTGACTTGAAGAACCTCAAGATAACGGAAAAATAGAGAATTATAAGAAAGGAAAGACAAGACCCTGTACACGTACCTCTACATCTGTCTCTATCTTCCCAAAACTAGGCCAGTGGTAATATACATAAATCACAAGGGAGAAATATCATCCTTCCCATCTTCACTTTTACCTCAAGAAAAACGAGAAGGAAAGGGTAAGGGACATCGCCTGAACTGCACTAGGGATGGGTCTCATGAATAG

mRNA sequence

ATGAACAGAGGAGGAGTAGAATCAGAGGATTTTTGTAATTTTGTTTTTGAAATTTTCTTTGTTGTGATTTCTTCAAATCCTGCTGATGATCGATGATTTTAGGCAACGAAATAGCGAACGCGGAAACCAGAGAGATCGAGATCGAGAAAGGGCTCAAGCTAGGGCTGGAAGCAAGACCAAGCAACCGAGAAACGACGGCTCGACGCCTGAACAGCGACGCGAAAGGGATGCAAAAGCTCTTCAGGAGAAGACGGCGAGAAAAGCTGCAATGGCTGCCGGAGGAATCAACGCTGGCGGCGGAGAAAGGAAAGACAAGACCCTGTACACGTACCTCTACATCTGTCTCTATCTTCCCAAAACTAGGCCAGTGGTAATATACATAAATCACAAGGGAGAAATATCATCCTTCCCATCTTCACTTTTACCTCAAGAAAAACGAGAAGGAAAGGGTAAGGGACATCGCCTGAACTGCACTAGGGATGGGTCTCATGAATAG

Coding sequence (CDS)

ATGATCGATGATTTTAGGCAACGAAATAGCGAACGCGGAAACCAGAGAGATCGAGATCGAGAAAGGGCTCAAGCTAGGGCTGGAAGCAAGACCAAGCAACCGAGAAACGACGGCTCGACGCCTGAACAGCGACGCGAAAGGGATGCAAAAGCTCTTCAGGAGAAGACGGCGAGAAAAGCTGCAATGGCTGCCGGAGGAATCAACGCTGGCGGCGGAGAAAGGAAAGACAAGACCCTGTACACGTACCTCTACATCTGTCTCTATCTTCCCAAAACTAGGCCAGTGGTAATATACATAAATCACAAGGGAGAAATATCATCCTTCCCATCTTCACTTTTACCTCAAGAAAAACGAGAAGGAAAGGGTAAGGGACATCGCCTGAACTGCACTAGGGATGGGTCTCATGAATAG

Protein sequence

MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGSTPEQRRERDAKALQEKTARKAAMAAGGINAGGGERKDKTLYTYLYICLYLPKTRPVVIYINHKGEISSFPSSLLPQEKREGKGKGHRLNCTRDGSHE

Homology

[Close]

BLAST of CmaCh17G012590 vs. TrEMBL
Match: K7MG85_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_16G094600 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 5.6e-19
Identity = 56/66 (84.85%), Postives = 61/66 (92.42%), Query Frame = 1


Query: 10  SERGNQRDRDRERAQARAGSKTKQPRNDGSTPEQRRERDAKALQEKTARKAAMAAGGINA 69
           S+RGNQR+RDRERAQARAG KTKQP+NDG TPEQRRERDAKALQEKTA+KAA AAGG NA
Sbjct: 48  SQRGNQRERDRERAQARAGGKTKQPKNDGLTPEQRRERDAKALQEKTAKKAAQAAGGNNA 107

Query: 70  GGGERK 76
           GGG +K
Sbjct: 108 GGGGKK 113

[Close]

BLAST of CmaCh17G012590 vs. TrEMBL
Match: K7MG84_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.1e-18
Identity = 55/64 (85.94%), Postives = 59/64 (92.19%), Query Frame = 1


Query: 12  RGNQRDRDRERAQARAGSKTKQPRNDGSTPEQRRERDAKALQEKTARKAAMAAGGINAGG 71
           RGNQR+RDRERAQARAG KTKQP+NDG TPEQRRERDAKALQEKTA+KAA AAGG NAGG
Sbjct: 65  RGNQRERDRERAQARAGGKTKQPKNDGLTPEQRRERDAKALQEKTAKKAAQAAGGNNAGG 124

Query: 72  GERK 76
           G +K
Sbjct: 125 GGKK 128

[Close]

BLAST of CmaCh17G012590 vs. TrEMBL
Match: A0A0R0G092_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_16G094600 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.1e-18
Identity = 55/64 (85.94%), Postives = 59/64 (92.19%), Query Frame = 1


Query: 12 RGNQRDRDRERAQARAGSKTKQPRNDGSTPEQRRERDAKALQEKTARKAAMAAGGINAGG 71
          RGNQR+RDRERAQARAG KTKQP+NDG TPEQRRERDAKALQEKTA+KAA AAGG NAGG
Sbjct: 3  RGNQRERDRERAQARAGGKTKQPKNDGLTPEQRRERDAKALQEKTAKKAAQAAGGNNAGG 62

Query: 72 GERK 76
          G +K
Sbjct: 63 GGKK 66

[Close]

BLAST of CmaCh17G012590 vs. TrEMBL
Match: A0A151R150_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_042653 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.8e-18
Identity = 56/66 (84.85%), Postives = 58/66 (87.88%), Query Frame = 1


Query: 10 SERGNQRDRDRERAQARAGSKTKQPRNDGSTPEQRRERDAKALQEKTARKAAMAAGGINA 69
          SERGNQRDRDRERAQARAG KTKQP+NDG TPEQRRERDAKALQEK A+KAA  AGG NA
Sbjct: 1  SERGNQRDRDRERAQARAGGKTKQPKNDGLTPEQRRERDAKALQEKAAKKAAQGAGGNNA 60

Query: 70 GGGERK 76
          GGG  K
Sbjct: 61 GGGGGK 66

[Close]

BLAST of CmaCh17G012590 vs. TrEMBL
Match: A0A0B2R3P1_GLYSO (Uncharacterized protein (Fragment) OS=Glycine soja GN=glysoja_047978 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 4.8e-18
Identity = 55/73 (75.34%), Postives = 63/73 (86.30%), Query Frame = 1


Query: 3   DDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGSTPEQRRERDAKALQEKTARKAAM 62
           +  ++   +RGNQR+RDRERAQARAG KTKQP+NDG TPEQRRERDAKALQEKTA+KAA 
Sbjct: 58  NQLKKMTHQRGNQRERDRERAQARAGGKTKQPKNDGLTPEQRRERDAKALQEKTAKKAAQ 117

Query: 63  AAGGINAGGGERK 76
           AAGG NAGGG +K
Sbjct: 118 AAGGNNAGGGGKK 130

[Close]

BLAST of CmaCh17G012590 vs. TAIR10
Match: AT3G24100.1 (AT3G24100.1 Uncharacterised protein family SERF)

HSP 1 Score: 72.0 bits (175), Expect = 3.2e-13
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = 1


Query: 12 RGNQRDRDRERAQARAGSKTKQPRNDGSTPEQRRERDAKALQEKTARKAAMAAGGINAGG 71
          RG+QR+RDRERA AR G K K  ++DG TPEQRRERDAKALQEKTA+KAA AA   ++GG
Sbjct: 3  RGSQRERDRERALARTGGKGKN-KDDGLTPEQRRERDAKALQEKTAKKAAQAAAAASSGG 62

Query: 72 GERK 76
          G  K
Sbjct: 63 GGGK 65

[Close]

BLAST of CmaCh17G012590 vs. TAIR10
Match: AT4G13615.1 (AT4G13615.1 Uncharacterised protein family SERF)

HSP 1 Score: 66.2 bits (160), Expect = 1.7e-11
Identity = 42/64 (65.62%), Postives = 47/64 (73.44%), Query Frame = 1


Query: 12 RGNQRDRDRERAQARAGSKTKQPRNDGSTPEQRRERDAKALQEKTARKAAMAAGGINAGG 71
          RG+QR+RDRERA ARAG K K   +DG TPEQRRERD KALQEK A+KAA AAG  + G 
Sbjct: 3  RGSQRERDRERAAARAGGKGKNG-DDGLTPEQRRERDGKALQEKAAKKAAQAAGASSGGA 62

Query: 72 GERK 76
             K
Sbjct: 63 AGGK 65

[Close]

BLAST of CmaCh17G012590 vs. NCBI nr
Match: gi|947058149|gb|KRH07555.1| (hypothetical protein GLYMA_16G094600, partial [Glycine max])

HSP 1 Score: 102.1 bits (253), Expect = 8.1e-19
Identity = 56/66 (84.85%), Postives = 61/66 (92.42%), Query Frame = 1


Query: 10  SERGNQRDRDRERAQARAGSKTKQPRNDGSTPEQRRERDAKALQEKTARKAAMAAGGINA 69
           S+RGNQR+RDRERAQARAG KTKQP+NDG TPEQRRERDAKALQEKTA+KAA AAGG NA
Sbjct: 48  SQRGNQRERDRERAQARAGGKTKQPKNDGLTPEQRRERDAKALQEKTAKKAAQAAGGNNA 107

Query: 70  GGGERK 76
           GGG +K
Sbjct: 108 GGGGKK 113

[Close]

BLAST of CmaCh17G012590 vs. NCBI nr
Match: gi|571527066|ref|XP_006599192.1| (PREDICTED: putative SERF-like protein [Glycine max])

HSP 1 Score: 100.1 bits (248), Expect = 3.1e-18
Identity = 55/64 (85.94%), Postives = 59/64 (92.19%), Query Frame = 1


Query: 12 RGNQRDRDRERAQARAGSKTKQPRNDGSTPEQRRERDAKALQEKTARKAAMAAGGINAGG 71
          RGNQR+RDRERAQARAG KTKQP+NDG TPEQRRERDAKALQEKTA+KAA AAGG NAGG
Sbjct: 3  RGNQRERDRERAQARAGGKTKQPKNDGLTPEQRRERDAKALQEKTAKKAAQAAGGNNAGG 62

Query: 72 GERK 76
          G +K
Sbjct: 63 GGKK 66

[Close]

BLAST of CmaCh17G012590 vs. NCBI nr
Match: gi|1012324216|gb|KYP36243.1| (hypothetical protein KK1_042653, partial [Cajanus cajan])

HSP 1 Score: 99.8 bits (247), Expect = 4.0e-18
Identity = 56/66 (84.85%), Postives = 58/66 (87.88%), Query Frame = 1


Query: 10 SERGNQRDRDRERAQARAGSKTKQPRNDGSTPEQRRERDAKALQEKTARKAAMAAGGINA 69
          SERGNQRDRDRERAQARAG KTKQP+NDG TPEQRRERDAKALQEK A+KAA  AGG NA
Sbjct: 1  SERGNQRDRDRERAQARAGGKTKQPKNDGLTPEQRRERDAKALQEKAAKKAAQGAGGNNA 60

Query: 70 GGGERK 76
          GGG  K
Sbjct: 61 GGGGGK 66

[Close]

BLAST of CmaCh17G012590 vs. NCBI nr
Match: gi|734390116|gb|KHN26512.1| (hypothetical protein glysoja_047978, partial [Glycine soja])

HSP 1 Score: 99.0 bits (245), Expect = 6.8e-18
Identity = 55/73 (75.34%), Postives = 63/73 (86.30%), Query Frame = 1


Query: 3   DDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGSTPEQRRERDAKALQEKTARKAAM 62
           +  ++   +RGNQR+RDRERAQARAG KTKQP+NDG TPEQRRERDAKALQEKTA+KAA 
Sbjct: 58  NQLKKMTHQRGNQRERDRERAQARAGGKTKQPKNDGLTPEQRRERDAKALQEKTAKKAAQ 117

Query: 63  AAGGINAGGGERK 76
           AAGG NAGGG +K
Sbjct: 118 AAGGNNAGGGGKK 130

[Close]

BLAST of CmaCh17G012590 vs. NCBI nr
Match: gi|965611011|dbj|BAT97150.1| (hypothetical protein VIGAN_09051700 [Vigna angularis var. angularis])

HSP 1 Score: 95.5 bits (236), Expect = 7.6e-17
Identity = 54/61 (88.52%), Postives = 55/61 (90.16%), Query Frame = 1


Query: 12 RGNQRDRDRERAQARAGSKTKQPRNDGSTPEQRRERDAKALQEKTARKAAMAAGGINAGG 71
          RGNQRDRDRERAQARAG KTKQPRNDG TPEQRRERDAKALQEK A+KAA AAGG NAG 
Sbjct: 3  RGNQRDRDRERAQARAGGKTKQPRNDGLTPEQRRERDAKALQEKAAKKAAQAAGGNNAGV 62

Query: 72 G 73
          G
Sbjct: 63 G 63

The following BLAST results are available for this feature:

BLAST of CmaCh17G012590 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh17G012590 vs. TrEMBL


Match Name	E-value	Identity	Description
K7MG85_SOYBN	5.6e-19	84.85	Uncharacterized protein OS=Glycine max GN=GLYMA_16G094600 PE=4 SV=1	[more]
K7MG84_SOYBN	2.1e-18	85.94	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A0A0R0G092_SOYBN	2.1e-18	85.94	Uncharacterized protein OS=Glycine max GN=GLYMA_16G094600 PE=4 SV=1	[more]
A0A151R150_CAJCA	2.8e-18	84.85	Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_042653 PE=4 SV=1	[more]
A0A0B2R3P1_GLYSO	4.8e-18	75.34	Uncharacterized protein (Fragment) OS=Glycine soja GN=glysoja_047978 PE=4 SV=1	[more]

BLAST of CmaCh17G012590 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G24100.1	3.2e-13	68.75	Uncharacterised protein family SERF	[more]
AT4G13615.1	1.7e-11	65.63	Uncharacterised protein family SERF	[more]

BLAST of CmaCh17G012590 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|947058149\|gb\|KRH07555.1\|	8.1e-19	84.85	hypothetical protein GLYMA_16G094600, partial [Glycine max]	[more]
gi\|571527066\|ref\|XP_006599192.1\|	3.1e-18	85.94	PREDICTED: putative SERF-like protein [Glycine max]	[more]
gi\|1012324216\|gb\|KYP36243.1\|	4.0e-18	84.85	hypothetical protein KK1_042653, partial [Cajanus cajan]	[more]
gi\|734390116\|gb\|KHN26512.1\|	6.8e-18	75.34	hypothetical protein glysoja_047978, partial [Glycine soja]	[more]
gi\|965611011\|dbj\|BAT97150.1\|	7.6e-17	88.52	hypothetical protein VIGAN_09051700 [Vigna angularis var. angularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007513	Uncharacterised_SERF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G012590.1	CmaCh17G012590.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007513	Uncharacterised protein family SERF	PFAM	PF04419	4F5	coord: 12..45 score: 1.
None	No IPR available	PANTHER	PTHR13596	SMALL EDRK-RICH FACTOR 1	coord: 11..103 score: 6.8
None	No IPR available	PANTHER	PTHR13596:SF5	SUBFAMILY NOT NAMED	coord: 11..103 score: 6.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh17G012590	MELO3C021034	Melon (DHL92) v3.5.1	cmameB321
CmaCh17G012590	Cla97C09G171710	Watermelon (97103) v2	cmawmbB390
CmaCh17G012590	Carg25525	Silver-seed gourd	carcmaB0591

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh17G012590	Cucurbita maxima (Rimu)	cmacmaB374
CmaCh17G012590	Cucumber (Gy14) v1	cgycmaB0137
CmaCh17G012590	Cucumber (Gy14) v1	cgycmaB0138
CmaCh17G012590	Cucurbita moschata (Rifu)	cmacmoB353
CmaCh17G012590	Cucurbita moschata (Rifu)	cmacmoB366
CmaCh17G012590	Wild cucumber (PI 183967)	cmacpiB388
CmaCh17G012590	Cucumber (Chinese Long) v2	cmacuB384
CmaCh17G012590	Watermelon (Charleston Gray)	cmawcgB309
CmaCh17G012590	Watermelon (97103) v1	cmawmB331
CmaCh17G012590	Cucurbita pepo (Zucchini)	cmacpeB371
CmaCh17G012590	Cucurbita pepo (Zucchini)	cmacpeB379
CmaCh17G012590	Bottle gourd (USVL1VR-Ls)	cmalsiB346
CmaCh17G012590	Cucumber (Gy14) v2	cgybcmaB920
CmaCh17G012590	Melon (DHL92) v3.6.1	cmamedB374
CmaCh17G012590	Silver-seed gourd	carcmaB0104
CmaCh17G012590	Cucumber (Chinese Long) v3	cmacucB0457
CmaCh17G012590	Wax gourd	cmawgoB0493