Carg25382 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25382
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_283 : 125300 .. 128919 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCCCTTCAACTTCTTCCATTTCTCTACTGCCAGCGATCGAGCGTTTCAATTTGTTGCGGAGGTTCTAGATACGGATAGTCAGACAATCGATATGAGCAGAAATTTGAGTCGCAGATCGTCTGATTTGGTTGCGCTTTCCGCTTCGCTTTCCCTACTTTTCGTCTCCGGTACTTCTTCAGATCTCTCTCTCTTTTTTTATTTTTTAATCTTTTGCTTTATTCGGTTTCTGCGATCTGTCTATTGATTTGTGCAATTTTTCCTTCTCTTTTCTTTGCTGATTCTGTTACTGGATGCTCTTGATGTGAATCGAATGACTGGGGGATGCAATTGACTGTTTTTCATGAATTCTGTGTTGAGATCTTGTTTTTGTTTGATTTTTAGTATCCTTCCCTGTTAATTAGTTGAACATGTCCTTCGGAATCTTTGTTTCTTTATGCTTTCTCAGTTAAATTAGTACTTTCAGAACTTCATAATCTGTTTATATGAAAGTTTGTGGCTGTAATCAGTTAATTTCAATTTCGCAATGTGTAAGCGAGACAAGCAGTTGCACGAAATACTAGTACTACTTAATCTGTGTTTTTTTAAAGGAAATCTCGATATTGTCATAAAAAATAACTTCTTGTACATTCTTTCTTTGAAGTTTATGGAGGTACAAAAAGTGTGTACCATAAAGCAGCCATAAAATTTGTTCATTCAATAGCTACGCACTGTTTTTCTCATTGCCAATGAAATGAGGAGTTTCGGTTCATCTCTGCTTTCGATGTTTATTTCCTTAAACCCGTACTCAAATTTCATTATTTATTATTTTCCTTTTCTATGCTTTTTTGGGCAAAGGAGATGCAAGTATGCTGTAGTGTATTGGTATTTTACCTGTGTAGATTCCAAACCCCATGGTTACTTTTTCGTTTTGTGCATTTTCCATTATCTTTTATCTAGAAATGAATTTTTTTTGTCGAATGATAAATGACCAGTCATCAATTAGTACATGTTGAGTCATTAATTTTTACTTTTGCAGCTATCTCTTAACACTTCTTTTGGTTGGCTACTACAGCCCTTTCTAATGATTCCAGTGGCAAAGATAGTATTAACTCCGGGAAGCATTCATCCTCAAGCAGCAAAACTGGCTCTATGGTTGCCATCATCCTCCTTGGGTTTTTGGTAGTTGTGTTATTATCATTTTTCCTTTTCAAGCTATGGCAGAAGAAGAGAAGAGAGGAGCAATATGCCCGACTTCTGAAATTGTTTGAAGAAGATGATGAGCTTGAGGTCGAACTTGGTCTTCGGGATTGAAGAATATCTGAAATTCTAGTTCACTGAAGCTGGGTATGTCCTTGATCTCGTCATCCTTTTATTTCTTACCTGAAATAGCTTACTTCATATTGATATGCTGGTGTGGTATGTCATGTCTATTAGATGATCTGGTTGCCCATGACGAATAGAATATGAACAAACTATATTCAATGGCATATGTATGCTTCTATCCATGGCTGCATGACCAGTAGTTACTTTTCTTATTTAATTTGATTGATATTAATTTTCTTTGGAGAATTACAAAAGGGACTTTCCACTTGGCCAAAAGTATAGATATACATAGAGATAGAAAGAGGGCTTTGCACTTTCACCAATATGAAGCCAAAAAAGAACTGAATACAAAAAATTGTGAAAAGTATGCCTTTTATAGTTATTGCTGGCGTTTCATAGGAAAAAAAATGTTGGCATGTTTGTGCCAACAGGAATGCATAATGCTTATATATGTGCAGTTATATAGTTGATTGCTCAGTTTTGCATCTCCATTCCTTCATTTTGGAACCACTTTTACATCTTAAAAGGCTAAAAATACTTTTTAGGTATCGACTAACTCCTCCCTTTCCTGTTTTCTCATCGTCTCCCATTTTTATTCCTTCTTTGCCAGCCATTCTATTGCAAGCTTGACTCTCTCATCTTGACTTAAACTTACAATTTACTATTAAAACTCTTATATGGGAAGTGGAAAAGCCTGACGTGGTGTCTTAAAAAGTAAATAGATACCTTAGAGACTTAGCTGAAGCTGCTAGGTGGGGCGAGAGTAAGTTTCAAGTAATATTCATAAAAGGATATCTGTTTTGAGTGCATGTTTTCTATATAGGAAATATATTATTAATAGGAAAATTCGATAGATGGAGAGGCATCATGAAGCACTGCCAAGATCGTTACAAGACGTTCTATCAATTGGTACTACTAAAAAGAATCTAATTACAAAATAAATTGGAGAACTCCATGAGCAGCCATTTAATAAAAATTATGATCTCCCACACATTTTAGAAAAGATCATATGATTGCCTTCCGTCCATACTTTTTTCATAATTTAGCCGTAGCAACATTTTCCCATAAAAGTGTGGCATTTCATTTGAAAGGATATCGAGAAAGAGCTGTTCCATGGAAGAACAACCCTTGTAAACAGCAGAAAATACCAAATTCGATAAGAAGCTAATGGCAATAGTTTGTGCCATGAGGGTAGGAATAAAGAGTTAACTTCGACTCTCCTAATTCTTACTGCACAATGCCTTTGGAATGTGTTTGATGTGTTAACTAGACCCAAAGCTGGAGTTTACAGGAAAAGTATAACTTTCTTAGGGGCCTGTTTCCATAACTTCTCTGAGTAATGAAAGTATAGGATTCTGTTTCCTTTGGTACTTAGAGAAGGGCATTCATTTGTAAGCACATGAAGAAAACAGGTAACCCGGCAACAGGGTGTTAAAAATCTTCAACAAAAACCGTAGATATCCCCAAGATACATCTTTGAGCTTTAGTTGAGCTTGAGTGTGTTAGATCTTCGTTTTCAAAAATAGGGCATAAGTGTGCATGACTAGTAACGCGTCCATAGAAGATGATTTTGCAACAACATCTAGTCCAATTATTTAAGTTAAATTACAAGTTTGGTTCTAAAATTTGAGGTGTGTATCTATATGTTCTTTGAGCTTTAAAAGTATTTTAAAGCATGGAATACGTTCCTAAACTTTCAATTTTGTGTCTAATAGGTACTTGAACTTTCAATTTTGTGTGTAATAGGTCGCTCACAAATTTGAAAATTTTAAAAATTAATTGATCTATTTGATATAAATTTGAATTTTATGTCTAATAAAACTCTAAAATTTTAATTTTGTATTTAGTAAATATTTGAATTTTGAACCATTTGAAAATTCAAAAGCTTGTAAATGAACCAATTATTTACTTTCTCAGTGACTTTATGATTTAGTGTTCTGATTCTGGCTGTTGTACTGCTTGCTATAGATTTTTTAGATCTTTTAGACCTGATACATTAGCTTTTACGTGGTTCTTGCATCGCCATCGTTTCTTTTCGAGTCCGTCCCTCATTAGTTAGGCAGTATATATCATAGATTATTACAGCTCAAATGTTCAGGCACTTCTCTTGATTTTCCTTCTTTTCTGTGCAAAGTTGCATATAATTTTCGAACGTTCCCTGTTCGTAGATCTGAGAATCTCTCAATCGACCCGACACTCTGCTGGCTTTTTTCACAGGCTCAGAAACCATTATGTTGGAATTATTGCATTTCAAATGGCTAAAAGATGGTGAGATGATAGCTTGAGTTTGCTGTAAGGTTAGATTTTTTTTTTTTT

mRNA sequence

TTTCCCTTCAACTTCTTCCATTTCTCTACTGCCAGCGATCGAGCGTTTCAATTTGTTGCGGAGGTTCTAGATACGGATAGTCAGACAATCGATATGAGCAGAAATTTGAGTCGCAGATCGTCTGATTTGGTTGCGCTTTCCGCTTCGCTTTCCCTACTTTTCGTCTCCGCCCTTTCTAATGATTCCAGTGGCAAAGATAGTATTAACTCCGGGAAGCATTCATCCTCAAGCAGCAAAACTGGCTCTATGGTTGCCATCATCCTCCTTGGGTTTTTGGTAGTTGTGTTATTATCATTTTTCCTTTTCAAGCTATGGCAGAAGAAGAGAAGAGAGGAGCAATATGCCCGACTTCTGAAATTGTTTGAAGAAGATGATGAGCTTGAGGTCGAACTTGGTCTTCGGGATTGAAGAATATCTGAAATTCTAGTTCACTGAAGCTGGATCTGAGAATCTCTCAATCGACCCGACACTCTGCTGGCTTTTTTCACAGGCTCAGAAACCATTATGTTGGAATTATTGCATTTCAAATGGCTAAAAGATGGTGAGATGATAGCTTGAGTTTGCTGTAAGGTTAGATTTTTTTTTTTTT

Coding sequence (CDS)

TTTCCCTTCAACTTCTTCCATTTCTCTACTGCCAGCGATCGAGCGTTTCAATTTGTTGCGGAGGTTCTAGATACGGATAGTCAGACAATCGATATGAGCAGAAATTTGAGTCGCAGATCGTCTGATTTGGTTGCGCTTTCCGCTTCGCTTTCCCTACTTTTCGTCTCCGCCCTTTCTAATGATTCCAGTGGCAAAGATAGTATTAACTCCGGGAAGCATTCATCCTCAAGCAGCAAAACTGGCTCTATGGTTGCCATCATCCTCCTTGGGTTTTTGGTAGTTGTGTTATTATCATTTTTCCTTTTCAAGCTATGGCAGAAGAAGAGAAGAGAGGAGCAATATGCCCGACTTCTGAAATTGTTTGAAGAAGATGATGAGCTTGAGGTCGAACTTGGTCTTCGGGATTGA

Protein sequence

FPFNFFHFSTASDRAFQFVAEVLDTDSQTIDMSRNLSRRSSDLVALSASLSLLFVSALSNDSSGKDSINSGKHSSSSSKTGSMVAIILLGFLVVVLLSFFLFKLWQKKRREEQYARLLKLFEEDDELEVELGLRD

Homology

[Close]

BLAST of Carg25382 vs. NCBI nr
Match: XP_022929545.1 (uncharacterized protein LOC111436082 [Cucurbita moschata] >XP_022929546.1 uncharacterized protein LOC111436082 [Cucurbita moschata] >XP_022929547.1 uncharacterized protein LOC111436082 [Cucurbita moschata] >XP_022984816.1 uncharacterized protein LOC111482987 [Cucurbita maxima] >XP_023551749.1 uncharacterized protein LOC111809626 [Cucurbita pepo subsp. pepo] >XP_023551750.1 uncharacterized protein LOC111809626 [Cucurbita pepo subsp. pepo] >XP_023551751.1 uncharacterized protein LOC111809626 [Cucurbita pepo subsp. pepo] >XP_023551752.1 uncharacterized protein LOC111809626 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 74.3 bits (181), Expect = 3.5e-10
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 32  MSRNLSRRSSDLVALSASLSLLFVSALSNDSSGKDSINSGKXXXXXXXXXXXXXXXXXXX 91
           MSRNLSRRSSDLVALSASLSLLFVSALSNDSSGKDSINSGKXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MSRNLSRRSSDLVALSASLSLLFVSALSNDSSGKDSINSGKXXXXXXXXXXXXXXXXXXX 60

Query: 92  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDELEVELGLRD 136
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDELEVELGLRD
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDELEVELGLRD 104

[Close]

BLAST of Carg25382 vs. NCBI nr
Match: XP_016901207.1 (PREDICTED: uncharacterized protein LOC103493315 [Cucumis melo])

HSP 1 Score: 57.4 bits (137), Expect = 4.4e-05
Identity = 47/104 (45.19%), Postives = 50/104 (48.08%), Query Frame = 0


Query: 32  MSRNLSRRSSDLVALSASLSLLFVSALSNDSSGKDSINSGKXXXXXXXXXXXXXXXXXXX 91
           MSRNLS R SD ++ SASLSLLFVSALS+DSS KDSINSG                    
Sbjct: 1   MSRNLSPRPSDFLSFSASLSLLFVSALSDDSSKKDSINSGNHPSSRSNTGSMVAIILLGI 60

Query: 92  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDELEVELGLRD 136
             XXXX                           DELEVELGLRD
Sbjct: 61  LVXXXXSFFLFKLWQKKRREEQYARLLKLFEEDDELEVELGLRD 104

[Close]

BLAST of Carg25382 vs. TrEMBL
Match: tr|A0A1S4DZ07|A0A1S4DZ07_CUCME (uncharacterized protein LOC103493315 OS=Cucumis melo OX=3656 GN=LOC103493315 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.9e-05
Identity = 47/104 (45.19%), Postives = 50/104 (48.08%), Query Frame = 0


Query: 32  MSRNLSRRSSDLVALSASLSLLFVSALSNDSSGKDSINSGKXXXXXXXXXXXXXXXXXXX 91
           MSRNLS R SD ++ SASLSLLFVSALS+DSS KDSINSG                    
Sbjct: 1   MSRNLSPRPSDFLSFSASLSLLFVSALSDDSSKKDSINSGNHPSSRSNTGSMVAIILLGI 60

Query: 92  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDELEVELGLRD 136
             XXXX                           DELEVELGLRD
Sbjct: 61  LVXXXXSFFLFKLWQKKRREEQYARLLKLFEEDDELEVELGLRD 104

The following BLAST results are available for this feature:

BLAST of Carg25382 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022929545.1	3.5e-10	100.00	uncharacterized protein LOC111436082 [Cucurbita moschata] >XP_022929546.1 unchar...	[more]
XP_016901207.1	4.4e-05	45.19	PREDICTED: uncharacterized protein LOC103493315 [Cucumis melo]	[more]

BLAST of Carg25382 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg25382 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg25382 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DZ07\|A0A1S4DZ07_CUCME	2.9e-05	45.19	uncharacterized protein LOC103493315 OS=Cucumis melo OX=3656 GN=LOC103493315 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0007155	cell adhesion

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0005173	stem cell factor receptor binding

Vocabulary: **INTERPRO**
Term	Definition
IPR003452	SCF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007155	cell adhesion
biological_process	GO:0007165	signal transduction
cellular_component	GO:0016020	membrane
molecular_function	GO:0005173	stem cell factor receptor binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25382-RA	Carg25382-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003452	Stem cell factor	PFAM	PF02404	SCF	coord: 2..127 e-value: 2.9E-4 score: 20.2
None	No IPR available	PANTHER	PTHR33780	FAMILY NOT NAMED	coord: 38..135
None	No IPR available	PANTHER	PTHR33780:SF2	SUBFAMILY NOT NAMED	coord: 38..135

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25382	Cla011816	Watermelon (97103) v1	carwmB0558
Carg25382	Csa3G110610	Cucumber (Chinese Long) v2	carcuB0589
Carg25382	MELO3C016488	Melon (DHL92) v3.5.1	carmeB0565
Carg25382	ClCG10G007200	Watermelon (Charleston Gray)	carwcgB0546
Carg25382	CSPI03G06380	Wild cucumber (PI 183967)	carcpiB0595
Carg25382	Cucsa.114240	Cucumber (Gy14) v1	carcgyB0638
Carg25382	CmoCh04G009580	Cucurbita moschata (Rifu)	carcmoB0763
Carg25382	Cp4.1LG01g08610	Cucurbita pepo (Zucchini)	carcpeB0797
Carg25382	Cp4.1LG14g00490	Cucurbita pepo (Zucchini)	carcpeB0796
Carg25382	CsGy3G006490	Cucumber (Gy14) v2	carcgybB0565
Carg25382	MELO3C016488.2	Melon (DHL92) v3.6.1	carmedB0571
Carg25382	CsaV3_3G006510	Cucumber (Chinese Long) v3	carcucB0597

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg25382	Carg00009	Silver-seed gourd	carcarB519

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25382	Bottle gourd (USVL1VR-Ls)	carlsiB508
Carg25382	Bottle gourd (USVL1VR-Ls)	carlsiB509
Carg25382	Watermelon (97103) v2	carwmbB0585
Carg25382	Wax gourd	carwgoB0669
Carg25382	Cucurbita maxima (Rimu)	carcmaB0782
Carg25382	Cucurbita maxima (Rimu)	carcmaB0783
Carg25382	Cucurbita moschata (Rifu)	carcmoB0762