Carg00009 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg00009
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_001 : 31841 .. 33517 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGAAGGAATTTTAATCAACCTTCTTGGTTCTTCACTCTTCAGGTAACTTCCAACCGCGTAGCGTTAGCGTGGTTTTGCAGCTTTCAGCTTTCCCTTCCACTTCCATTTCTCTGCCGCGAGCGAGCGACAGAATTTGTTTTCGAGCTTGCCAGAAACAGATAGACAGAGATGAGCGAAAATTTGAGTCGCAGATCGTCTGATTTTATTTCGTTTTCGGCTTTGCTTTCTCTACTTTTCGTCTCCGGTACTTCCTTCAGATCTCTCTTTCTTGTCCCTTCTGTTAATTTATACTTTGCTTAATTCAATTTTTGTTTAGTTTCTATGATCCGTTCTTTGATTTTATGCAAATTCTCGTTTCCTTGTTTTTGCTTGTTCTGTTACTGGAAGCGGTTGAGGTGAATCGAATTGAGGGGGACGCAATTGACTTTAGAAGCCTTTTCTTTTCATGAATTTGTATTGAGATCTCGTTTTTTGTTTGATTTTCAATCTCCTTCCATCTTAACTAGTTGAAATCTTTGTTTGTTTATGTTTTCTTAGTTAAAATAATACTTACAGAACTTGATTGTTGTTTGAATGAAATTTGGTTGATGTATTACGATCTAAGGGGATGTGTGAATCTCAATTTCGCAATGTATAAGCGAGCCAAGCAGATGCACGAAGTAGCAGTATTACTTAATCTGTGTGTCTATATATATATATGTAAAGAATCCTTGTCGACATAAAAAACAACTTCTTGTACATGTTTTTATAGGTGTATGAAATTACAAAAACTGTACCAAAAAGCAGCCATGAAGTTTGTTCTTTCAGTGGCTACGCACAATTTTGCTAATTGAGAATGAAAATGAGGAGTTTCAGTTCACCTCTGGCTTCGTTGTTGTTTATTTCCCTTCAAACCCGTACTCATTGTTTATTGCTGAGGGAGATGCAATCATGCATTAGTATTTTTCCTGTGTATACTCCAAATCACATGGTTACTCTTGTTTTTGTGCATCTTCCATGATCTTTTATCTTGAAATGAATTTTGCTGTCGAATGATAAATGTCTAGACATCAATTAGCCAATATTGAGACATGAATACTATCTTTTGTAGCTATCTCATAACACTTCTTTTGGTTGGCTGCTACAGCCCTTTCTGATGACTCCACTCCCAAAGATAGTATTAAATCTGGAAATCATCCATCCTCCAGAAGCAACACTAGCTCGATGATTGCAATCATCCTCCTTGGTCTTTTGGTAGTGGTGTTGTCATTTTTCCTTTTCAAGTTATGGCAAAAAAAGAGAAGAGAGGAGCAATATGCCCGACTTCTGAAATTGTTTGAAGAAGACGATGAGCTTGAAGTTGAGCTTGGTCTTCGGGATTGAAGGATATCTGAAATTTACTTCACTGAAGTTGGTATGTCTTTGAACTCGTCATCCTTTTATTTTTCACCTGAAATAGCTTTATACATATCTGATATGCTGGAGTGGTATTGTCATGTCTTTTAGATGATATGGTTTCTCATGATGAATTCAGTATTAGAAAATCCGTCGAACGCCATATGTATGTTTCTATCCATGGCTGCATGACGAGTAATCATTTTTCTTCTCTAATTTATATCTCATTCAGTCTTTTTCTCTATGATGTTGCCATTAAGTTCTTATTATCCTTGGGAGTAACACACTAAATTATGTTTAAT

mRNA sequence

TTGAAGGAATTTTAATCAACCTTCTTGGTTCTTCACTCTTCAGGTAACTTCCAACCGCGTAGCGTTAGCGTGGTTTTGCAGCTTTCAGCTTTCCCTTCCACTTCCATTTCTCTGCCGCGAGCGAGCGACAGAATTTGTTTTCGAGCTTGCCAGAAACAGATAGACAGAGATGAGCGAAAATTTGAGTCGCAGATCGTCTGATTTTATTTCGTTTTCGGCTTTGCTTTCTCTACTTTTCGTCTCCGCCCTTTCTGATGACTCCACTCCCAAAGATAGTATTAAATCTGGAAATCATCCATCCTCCAGAAGCAACACTAGCTCGATGATTGCAATCATCCTCCTTGGTCTTTTGGTAGTGGTGTTGTCATTTTTCCTTTTCAAGTTATGGCAAAAAAAGAGAAGAGAGGAGCAATATGCCCGACTTCTGAAATTGTTTGAAGAAGACGATGAGCTTGAAGTTGAGCTTGGTCTTCGGGATTGAAGGATATCTGAAATTTACTTCACTGAAGTTGGTATGTCTTTGAACTCGTCATCCTTTTATTTTTCACCTGAAATAGCTTTATACATATCTGATATGCTGGAGTGGTATTGTCATGTCTTTTAGATGATATGGTTTCTCATGATGAATTCAGTATTAGAAAATCCGTCGAACGCCATATGTATGTTTCTATCCATGGCTGCATGACGAGTAATCATTTTTCTTCTCTAATTTATATCTCATTCAGTCTTTTTCTCTATGATGTTGCCATTAAGTTCTTATTATCCTTGGGAGTAACACACTAAATTATGTTTAAT

Coding sequence (CDS)

ATGAGCGAAAATTTGAGTCGCAGATCGTCTGATTTTATTTCGTTTTCGGCTTTGCTTTCTCTACTTTTCGTCTCCGCCCTTTCTGATGACTCCACTCCCAAAGATAGTATTAAATCTGGAAATCATCCATCCTCCAGAAGCAACACTAGCTCGATGATTGCAATCATCCTCCTTGGTCTTTTGGTAGTGGTGTTGTCATTTTTCCTTTTCAAGTTATGGCAAAAAAAGAGAAGAGAGGAGCAATATGCCCGACTTCTGAAATTGTTTGAAGAAGACGATGAGCTTGAAGTTGAGCTTGGTCTTCGGGATTGA

Protein sequence

MSENLSRRSSDFISFSALLSLLFVSALSDDSTPKDSIKSGNHPSSRSNTSSMIAIILLGLLVVVLSFFLFKLWQKKRREEQYARLLKLFEEDDELEVELGLRD

Homology

[Close]

BLAST of Carg00009 vs. NCBI nr
Match: XP_016901207.1 (PREDICTED: uncharacterized protein LOC103493315 [Cucumis melo])

HSP 1 Score: 72.8 bits (177), Expect = 7.7e-10
Identity = 55/104 (52.88%), Postives = 57/104 (54.81%), Query Frame = 0


Query: 1   MSENLSRRSSDFISFSALLSLLFVSALSDDSTPKDSIKSGNHPSS-XXXXXXXXXXXXXX 60
           MS NLS R SDF+SFSA LSLLFVSALSDDS+ KDSI SGNHPSS               
Sbjct: 1   MSRNLSPRPSDFLSFSASLSLLFVSALSDDSSKKDSINSGNHPSSRSNTGSMVAIILLGI 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEDDELEVELGLRD 104
             XXXX                        EEDDELEVELGLRD
Sbjct: 61  LVXXXXSFFLFKLWQKKRREEQYARLLKLFEEDDELEVELGLRD 104

[Close]

BLAST of Carg00009 vs. NCBI nr
Match: XP_022929545.1 (uncharacterized protein LOC111436082 [Cucurbita moschata] >XP_022929546.1 uncharacterized protein LOC111436082 [Cucurbita moschata] >XP_022929547.1 uncharacterized protein LOC111436082 [Cucurbita moschata] >XP_022984816.1 uncharacterized protein LOC111482987 [Cucurbita maxima] >XP_023551749.1 uncharacterized protein LOC111809626 [Cucurbita pepo subsp. pepo] >XP_023551750.1 uncharacterized protein LOC111809626 [Cucurbita pepo subsp. pepo] >XP_023551751.1 uncharacterized protein LOC111809626 [Cucurbita pepo subsp. pepo] >XP_023551752.1 uncharacterized protein LOC111809626 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 54.7 bits (130), Expect = 2.2e-04
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 1  MSENLSRRSSDFISFSALLSLLFVSALSDDSTPKDSIKSG 41
          MS NLSRRSSD ++ SA LSLLFVSALS+DS+ KDSI SG
Sbjct: 1  MSRNLSRRSSDLVALSASLSLLFVSALSNDSSGKDSINSG 40

[Close]

BLAST of Carg00009 vs. TrEMBL
Match: tr|A0A1S4DZ07|A0A1S4DZ07_CUCME (uncharacterized protein LOC103493315 OS=Cucumis melo OX=3656 GN=LOC103493315 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.1e-10
Identity = 55/104 (52.88%), Postives = 57/104 (54.81%), Query Frame = 0


Query: 1   MSENLSRRSSDFISFSALLSLLFVSALSDDSTPKDSIKSGNHPSS-XXXXXXXXXXXXXX 60
           MS NLS R SDF+SFSA LSLLFVSALSDDS+ KDSI SGNHPSS               
Sbjct: 1   MSRNLSPRPSDFLSFSASLSLLFVSALSDDSSKKDSINSGNHPSSRSNTGSMVAIILLGI 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEDDELEVELGLRD 104
             XXXX                        EEDDELEVELGLRD
Sbjct: 61  LVXXXXSFFLFKLWQKKRREEQYARLLKLFEEDDELEVELGLRD 104

The following BLAST results are available for this feature:

BLAST of Carg00009 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016901207.1	7.7e-10	52.88	PREDICTED: uncharacterized protein LOC103493315 [Cucumis melo]	[more]
XP_022929545.1	2.2e-04	75.00	uncharacterized protein LOC111436082 [Cucurbita moschata] >XP_022929546.1 unchar...	[more]

BLAST of Carg00009 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg00009 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg00009 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DZ07\|A0A1S4DZ07_CUCME	5.1e-10	52.88	uncharacterized protein LOC103493315 OS=Cucumis melo OX=3656 GN=LOC103493315 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0007155	cell adhesion
biological_process	GO:0007165	signal transduction
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005173	stem cell factor receptor binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00009-RA	Carg00009-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..48
None	No IPR available	PANTHER	PTHR33780	FAMILY NOT NAMED	coord: 5..103
None	No IPR available	PANTHER	PTHR33780:SF2	SUBFAMILY NOT NAMED	coord: 5..103

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg00009	Cla011816	Watermelon (97103) v1	carwmB0664
Carg00009	Csa3G110610	Cucumber (Chinese Long) v2	carcuB0684
Carg00009	MELO3C016488	Melon (DHL92) v3.5.1	carmeB0670
Carg00009	ClCG10G007200	Watermelon (Charleston Gray)	carwcgB0641
Carg00009	CSPI03G06380	Wild cucumber (PI 183967)	carcpiB0696
Carg00009	Cucsa.114240	Cucumber (Gy14) v1	carcgyB0741
Carg00009	CmoCh04G009580	Cucurbita moschata (Rifu)	carcmoB0923
Carg00009	Cp4.1LG01g08610	Cucurbita pepo (Zucchini)	carcpeB0938
Carg00009	Cp4.1LG14g00490	Cucurbita pepo (Zucchini)	carcpeB0937
Carg00009	CsGy3G006490	Cucumber (Gy14) v2	carcgybB0659
Carg00009	MELO3C016488.2	Melon (DHL92) v3.6.1	carmedB0683
Carg00009	CsaV3_3G006510	Cucumber (Chinese Long) v3	carcucB0698

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg00009	Carg25382	Silver-seed gourd	carcarB519

The following block(s) are covering this gene:


Gene	Organism	Block
Carg00009	Watermelon (97103) v2	carwmbB0686
Carg00009	Wax gourd	carwgoB0778
Carg00009	Wax gourd	carwgoB0779
Carg00009	Cucurbita maxima (Rimu)	carcmaB0946
Carg00009	Cucurbita maxima (Rimu)	carcmaB0948
Carg00009	Cucurbita moschata (Rifu)	carcmoB0920
Carg00009	Bottle gourd (USVL1VR-Ls)	carlsiB614