Carg25248 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25248
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	PLATZ transcription factor family protein, putative
Location	Cucurbita_argyrosperma_scaffold_210 : 93161 .. 95351 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTCAGTTTTCACTCTGCAGCCGCATAAACAGTCAGTCTCTATTGTCTCTTCATTTTTCTTCTCTATCTGATTTCTCTTCTCCTCTTCCCTTTTTCCCAATATATTGAAGAAATTTCCCAGAAATTCGTTGTTTTTTATCGGTTTTTCGACGACCCAGAAGTGGGATTTGCTTCGATTTGAATTGTATATGGTGAGATTTGAGTTTCCTCTGTATTTTGCTGTCTTGGGGATGTTTTTCTCCAGGGGTTTTCCTTTTAATTTCTTCTTTGTCTTGTTCATCATCGAATGTTGTTTTTGGGTGTTATTGGATCACTTTGTTTGAGGCTTTCTTACAGTTTTCCGATTATTGAGGAACATGTTTGGCTGTAATCGTTTGATTTAGAATTTTGTGTTCTGTGTTTTAGATGCTTCAAGTATCGTATAATTTTGGAATTAGGAGTTTAGTTGTTTGATTGTGACTGATTTGAGAGTATAATCTATTGTTTTTATTCAAACAATTGCCAGACCCTAATGATGTTGAATTTGATGATGTTTGATTTGGATTGTTTGGATTTTCATTTTGGCAGGCAGGATGCAAGATTTATCTGAAGAAAAGGAAAGCAGATTGGCTTAGTTCCCTATTGCAAAGCAAATTTTTTGGTTCTTGTGTTCATCATCAAAACAATAGAAAAAATGAAAAGAATGTGTTTTGCATAGATTGTGGTATTGCCATCTGCAGGCATTGCTTGATATCTCATTGCATTCATCGGCGTTTACAGATCTGCAAGTATGTTTATCAGTACGTCGTTCGTGTTCCCGACTTGCAGAACCATCTTGATTGTTGCAATATTCAGGTATTCCTTTGTTACCTTCTTAAATTATACAAACTTCTTGTCCTAAAGCTGTCTTTGTCTTGTTAGCTGTTGCTTCTGGTTGCATGTTTTGATCAAATGAATAAGAAGCATTATAAACCATTTTGAAAGCCAAGGAACCATTGAATTCAACCATAAAACAGCACTGTTTTGTGTTTGGCACATTGGAATTTCTTTTAGCCAATGATTAGGTTTGTCAGCAATGTGTTAGTACAAGTAAGAACGAACTACCTACCGTAGGTTGACCTAGTGATCGAGAAGAGATACATAAACAATAAAGAGCTTAGAGCAAATGTGTACGAGTCACAATGGCTAATCGTGTAGGATCTAATGTCCCGTGAATTATCTTGGCAATCAAATATAGTAAGGTCAGTTAGTTGTCTGATAAGAACATTCGAGTTGCAGACACTCGGTTTAGATCAGATAACAGTGATTTAACTTGCTAATCTAAATGTATAGTTTCTTATATCCATCCCCTCCACCTAAGTTGATTATGTTAAAGTTTGGGACTTTGGTTCACCAGACTTATAAGATAAATGGGGAGAAGGCTGTTCATCTGAGTCCCCGGCCACAATCGAAAGACTCGAAACCATCGACAAAATTGAAGTTTGGAGGTACTTGTGAAGCTTGTGGGAGATACATACAAGACTTGCCAAACCGCTTCTGTTCGATCGCTTGCAAAGTAAATAAAACTTTCTTTAACTTGTAGACTCTCATTCACTTGCACATAAATGACATGAAGATGTGCCATTGATGAACTTTTTCAGGTCTCTATGGTTCCAGTGGAACTCAATAATCAAAGCTGTAGATGCATCACATCAAAGTCGGATCCGAACGAGATTTCATGGAAGGAGAATCACAATGTAGAACCCAATACGAGCGAAATGAAATCGTCTATCTCAATGGCTGAATCAACTGAAGAGATCAAAGCATGGCAAGTGAAGTCAGGGTTGAATCCAAGGAAGCTTTTGCATAAAAGGAAGGGCATCCCACATCGATCGCCTTTAAAGTAAAATACCGAAACACTAATTGTGATATCATGATGATGATCTTTGATACCCCTTTTGCTCCCAAACCCACATTTTTTGATATATGAAAGTCCTATAAGCATATAGTTATAGATATCTATATATAATAACATATATTTCACCTCTTGCATTGGCTCTATATTGGATTAGTTGTGCCTTAGATCTTTTTTTTTTCTGTCAATTTTTTGGAGGTTGTATAGAGAAGGATTGATTGTGTTGGTTGTTGAAACAATAATCAAATCATCAACCTTTTGGATTATATCCTTTTGGTTAATCTGATCATCATGTGCTGCTGTCTTGTTTGCTGAGC

mRNA sequence

TATTCAGTTTTCACTCTGCAGCCGCATAAACAGTCAGTCTCTATTGTCTCTTCATTTTTCTTCTCTATCTGATTTCTCTTCTCCTCTTCCCTTTTTCCCAATATATTGAAGAAATTTCCCAGAAATTCGTTGTTTTTTATCGGTTTTTCGACGACCCAGAAGTGGGATTTGCTTCGATTTGAATTGTATATGGCAGGATGCAAGATTTATCTGAAGAAAAGGAAAGCAGATTGGCTTAGTTCCCTATTGCAAAGCAAATTTTTTGGTTCTTGTGTTCATCATCAAAACAATAGAAAAAATGAAAAGAATGTGTTTTGCATAGATTGTGGTATTGCCATCTGCAGGCATTGCTTGATATCTCATTGCATTCATCGGCGTTTACAGATCTGCAAGTATGTTTATCAGTACGTCGTTCGTGTTCCCGACTTGCAGAACCATCTTGATTGTTGCAATATTCAGACTTATAAGATAAATGGGGAGAAGGCTGTTCATCTGAGTCCCCGGCCACAATCGAAAGACTCGAAACCATCGACAAAATTGAAGTTTGGAGGTACTTGTGAAGCTTGTGGGAGATACATACAAGACTTGCCAAACCGCTTCTGTTCGATCGCTTGCAAAGTCTCTATGGTTCCAGTGGAACTCAATAATCAAAGCTGTAGATGCATCACATCAAAGTCGGATCCGAACGAGATTTCATGGAAGGAGAATCACAATGTAGAACCCAATACGAGCGAAATGAAATCGTCTATCTCAATGGCTGAATCAACTGAAGAGATCAAAGCATGGCAAGTGAAGTCAGGGTTGAATCCAAGGAAGCTTTTGCATAAAAGGAAGGGCATCCCACATCGATCGCCTTTAAAGTAAAATACCGAAACACTAATTGTGATATCATGATGATGATCTTTGATACCCCTTTTGCTCCCAAACCCACATTTTTTGATATATGAAAGTCCTATAAGCATATAGTTATAGATATCTATATATAATAACATATATTTCACCTCTTGCATTGGCTCTATATTGGATTAGTTGTGCCTTAGATCTTTTTTTTTTCTGTCAATTTTTTGGAGGTTGTATAGAGAAGGATTGATTGTGTTGGTTGTTGAAACAATAATCAAATCATCAACCTTTTGGATTATATCCTTTTGGTTAATCTGATCATCATGTGCTGCTGTCTTGTTTGCTGAGC

Coding sequence (CDS)

ATGGCAGGATGCAAGATTTATCTGAAGAAAAGGAAAGCAGATTGGCTTAGTTCCCTATTGCAAAGCAAATTTTTTGGTTCTTGTGTTCATCATCAAAACAATAGAAAAAATGAAAAGAATGTGTTTTGCATAGATTGTGGTATTGCCATCTGCAGGCATTGCTTGATATCTCATTGCATTCATCGGCGTTTACAGATCTGCAAGTATGTTTATCAGTACGTCGTTCGTGTTCCCGACTTGCAGAACCATCTTGATTGTTGCAATATTCAGACTTATAAGATAAATGGGGAGAAGGCTGTTCATCTGAGTCCCCGGCCACAATCGAAAGACTCGAAACCATCGACAAAATTGAAGTTTGGAGGTACTTGTGAAGCTTGTGGGAGATACATACAAGACTTGCCAAACCGCTTCTGTTCGATCGCTTGCAAAGTCTCTATGGTTCCAGTGGAACTCAATAATCAAAGCTGTAGATGCATCACATCAAAGTCGGATCCGAACGAGATTTCATGGAAGGAGAATCACAATGTAGAACCCAATACGAGCGAAATGAAATCGTCTATCTCAATGGCTGAATCAACTGAAGAGATCAAAGCATGGCAAGTGAAGTCAGGGTTGAATCCAAGGAAGCTTTTGCATAAAAGGAAGGGCATCCCACATCGATCGCCTTTAAAGTAA

Protein sequence

MAGCKIYLKKRKADWLSSLLQSKFFGSCVHHQNNRKNEKNVFCIDCGIAICRHCLISHCIHRRLQICKYVYQYVVRVPDLQNHLDCCNIQTYKINGEKAVHLSPRPQSKDSKPSTKLKFGGTCEACGRYIQDLPNRFCSIACKVSMVPVELNNQSCRCITSKSDPNEISWKENHNVEPNTSEMKSSISMAESTEEIKAWQVKSGLNPRKLLHKRKGIPHRSPLK

Homology

[Close]

BLAST of Carg25248 vs. NCBI nr
Match: XP_022963423.1 (uncharacterized protein LOC111463631 [Cucurbita moschata] >XP_023545157.1 uncharacterized protein LOC111804538 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 472.2 bits (1214), Expect = 9.5e-130
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0


Query: 1   MAGCKIYLKKRKADWLSSLLQSKFFGSCVHHQNNRKNEKNVFCIDCGIAICRHCLISHCI 60
           MAGCKIYLKKRKADWLSSLLQSKFFGSCVHHQNNRKNEKNVFCIDCGIAICRHCLISHCI
Sbjct: 1   MAGCKIYLKKRKADWLSSLLQSKFFGSCVHHQNNRKNEKNVFCIDCGIAICRHCLISHCI 60

Query: 61  HRRLQICKYVYQYVVRVPDLQNHLDCCNIQTYKINGEKAVHLSPRPQSKDSKPSTKLKFG 120
           HRRLQICKYVYQYVVRVPDLQNHLDCCNIQTYKINGEKAVHLSPRPQSKDSKPSTKLKFG
Sbjct: 61  HRRLQICKYVYQYVVRVPDLQNHLDCCNIQTYKINGEKAVHLSPRPQSKDSKPSTKLKFG 120

Query: 121 GTCEACGRYIQDLPNRFCSIACKVSMVPVELNNQSCRCITSKSDPNEISWKENHNVEPNT 180
           GTCEACGRYIQDLPNRFCSIACKVSMVPVELNNQSCRCITSKSDPNEISWKENHNVEPNT
Sbjct: 121 GTCEACGRYIQDLPNRFCSIACKVSMVPVELNNQSCRCITSKSDPNEISWKENHNVEPNT 180

Query: 181 SEMKSSISMAESTEEIKAWQVKSGLNPRKLLHKRKGIPHRSPLK 225
           SEMKSSISMAESTEEIKAWQVKSGLNPRKLLHKRKGIPHRSPLK
Sbjct: 181 SEMKSSISMAESTEEIKAWQVKSGLNPRKLLHKRKGIPHRSPLK 224

[Close]

BLAST of Carg25248 vs. NCBI nr
Match: XP_022990994.1 (uncharacterized protein LOC111487719 [Cucurbita maxima])

HSP 1 Score: 469.2 bits (1206), Expect = 8.1e-129
Identity = 223/224 (99.55%), Postives = 223/224 (99.55%), Query Frame = 0


Query: 1   MAGCKIYLKKRKADWLSSLLQSKFFGSCVHHQNNRKNEKNVFCIDCGIAICRHCLISHCI 60
           MAGCKIYLKKRKADWLSSLLQSKFFGSCVHHQNNRKNEKNVFCIDCGIAICRHCLISHCI
Sbjct: 1   MAGCKIYLKKRKADWLSSLLQSKFFGSCVHHQNNRKNEKNVFCIDCGIAICRHCLISHCI 60

Query: 61  HRRLQICKYVYQYVVRVPDLQNHLDCCNIQTYKINGEKAVHLSPRPQSKDSKPSTKLKFG 120
           HRRLQICKYVYQYVVRVPDLQNHLDCCNIQTYKINGEKAVHLSPRPQSKDSKPSTKLKFG
Sbjct: 61  HRRLQICKYVYQYVVRVPDLQNHLDCCNIQTYKINGEKAVHLSPRPQSKDSKPSTKLKFG 120

Query: 121 GTCEACGRYIQDLPNRFCSIACKVSMVPVELNNQSCRCITSKSDPNEISWKENHNVEPNT 180
           GTCEACGRYIQDLPNRFCSIACKVSMV VELNNQSCRCITSKSDPNEISWKENHNVEPNT
Sbjct: 121 GTCEACGRYIQDLPNRFCSIACKVSMVSVELNNQSCRCITSKSDPNEISWKENHNVEPNT 180

Query: 181 SEMKSSISMAESTEEIKAWQVKSGLNPRKLLHKRKGIPHRSPLK 225
           SEMKSSISMAESTEEIKAWQVKSGLNPRKLLHKRKGIPHRSPLK
Sbjct: 181 SEMKSSISMAESTEEIKAWQVKSGLNPRKLLHKRKGIPHRSPLK 224

[Close]

BLAST of Carg25248 vs. NCBI nr
Match: XP_004142823.1 (PREDICTED: uncharacterized protein LOC101210438 [Cucumis sativus] >KGN51458.1 hypothetical protein Csa_5G550220 [Cucumis sativus])

HSP 1 Score: 421.0 bits (1081), Expect = 2.5e-114
Identity = 200/225 (88.89%), Postives = 213/225 (94.67%), Query Frame = 0


Query: 1   MAGCKIYLKKRKADWLSSLLQSKFFGSCVHHQNNRKNEKNVFCIDCGIAICRHCLISHCI 60
           MAGCKIYLKKRK DWL+SLLQSKFFGSCVHHQNNRKNEKNVFCIDCGIAICRHCLISHC+
Sbjct: 1   MAGCKIYLKKRKTDWLNSLLQSKFFGSCVHHQNNRKNEKNVFCIDCGIAICRHCLISHCV 60

Query: 61  HRRLQICKYVYQYVVRVPDLQNHLDCCNIQTYKINGEKAVHLSPRPQSKDSKPSTKLKFG 120
           HRRLQICKYVYQYVVRVPDLQ+HLDCCNIQTYKINGEKAVHLSPRPQSKDSKPSTKLKFG
Sbjct: 61  HRRLQICKYVYQYVVRVPDLQDHLDCCNIQTYKINGEKAVHLSPRPQSKDSKPSTKLKFG 120

Query: 121 GTCEACGRYIQDLPNRFCSIACKVSMVPVELNNQSCRCITSKSDPNEISWKENHNVEPNT 180
           GTCEACGRYIQDLPNRFCSIACKVSMVP+ELNNQ CR + S+ +  +I WKENHN+E NT
Sbjct: 121 GTCEACGRYIQDLPNRFCSIACKVSMVPMELNNQCCRFMDSEPNLKDIPWKENHNLEINT 180

Query: 181 SEMK-SSISMAESTEEIKAWQVKSGLNPRKLLHKRKGIPHRSPLK 225
           SEM+ SSIS+AESTEEIKAW+VK  LNP+KLLHKRKGIPHRSPLK
Sbjct: 181 SEMESSSISVAESTEEIKAWRVKMVLNPKKLLHKRKGIPHRSPLK 225

[Close]

BLAST of Carg25248 vs. NCBI nr
Match: XP_008467074.1 (PREDICTED: uncharacterized protein LOC103504510 [Cucumis melo])

HSP 1 Score: 421.0 bits (1081), Expect = 2.5e-114
Identity = 200/225 (88.89%), Postives = 214/225 (95.11%), Query Frame = 0


Query: 1   MAGCKIYLKKRKADWLSSLLQSKFFGSCVHHQNNRKNEKNVFCIDCGIAICRHCLISHCI 60
           MAGCKI+LKKRK DWL+SLLQSKFFGSCVHHQNNRKNEKNVFCIDCGIAICRHCLISHC+
Sbjct: 1   MAGCKIFLKKRKTDWLNSLLQSKFFGSCVHHQNNRKNEKNVFCIDCGIAICRHCLISHCV 60

Query: 61  HRRLQICKYVYQYVVRVPDLQNHLDCCNIQTYKINGEKAVHLSPRPQSKDSKPSTKLKFG 120
           HRRLQICKYVYQYVVRVPDLQ+HLDCCNIQTYKINGEKAVHL PRPQSKDSKPSTKLKFG
Sbjct: 61  HRRLQICKYVYQYVVRVPDLQDHLDCCNIQTYKINGEKAVHLCPRPQSKDSKPSTKLKFG 120

Query: 121 GTCEACGRYIQDLPNRFCSIACKVSMVPVELNNQSCRCITSKSDPNEISWKENHNVEPNT 180
           GTCEACGRYIQDLPNRFCSIACKVSMVP+ELNNQ CR I S+S+  +I WKENHN+E NT
Sbjct: 121 GTCEACGRYIQDLPNRFCSIACKVSMVPMELNNQCCRFIDSESNLKDIPWKENHNLEINT 180

Query: 181 SEMK-SSISMAESTEEIKAWQVKSGLNPRKLLHKRKGIPHRSPLK 225
           SEM+ SSIS+AESTEEIKAW+VK+ LNP+KLLHKRKGIPHRSPLK
Sbjct: 181 SEMESSSISVAESTEEIKAWRVKTILNPKKLLHKRKGIPHRSPLK 225

[Close]

BLAST of Carg25248 vs. NCBI nr
Match: XP_022146423.1 (uncharacterized protein LOC111015643 isoform X1 [Momordica charantia])

HSP 1 Score: 412.5 bits (1059), Expect = 9.0e-112
Identity = 196/224 (87.50%), Postives = 209/224 (93.30%), Query Frame = 0


Query: 1   MAGCKIYLKKRKADWLSSLLQSKFFGSCVHHQNNRKNEKNVFCIDCGIAICRHCLISHCI 60
           MAGCKIYLKKRKADWLSSLLQSKFFGSC HHQNNRKNEKNVFC+DCG+AICRHCLISHCI
Sbjct: 1   MAGCKIYLKKRKADWLSSLLQSKFFGSCGHHQNNRKNEKNVFCLDCGVAICRHCLISHCI 60

Query: 61  HRRLQICKYVYQYVVRVPDLQNHLDCCNIQTYKINGEKAVHLSPRPQSKDSKPSTKLKFG 120
           HRRLQICKYVYQYVVRV DLQNHLDCCNIQTYKINGEKAVHLSPRPQSKDSKPSTKLKFG
Sbjct: 61  HRRLQICKYVYQYVVRVHDLQNHLDCCNIQTYKINGEKAVHLSPRPQSKDSKPSTKLKFG 120

Query: 121 GTCEACGRYIQDLPNRFCSIACKVSMVPVELNNQSCRCITSKSDPNEISWKENHNVEPNT 180
           GTCEACGRYIQDLPNRFCSIACKVSM PVELN+QS R + S+ +  +++ KENHN E NT
Sbjct: 121 GTCEACGRYIQDLPNRFCSIACKVSMAPVELNDQSSRFMASEPNLKDLTCKENHNPETNT 180

Query: 181 SEMKSSISMAESTEEIKAWQVKSGLNPRKLLHKRKGIPHRSPLK 225
           SE++SSISMAESTEEIKAW+ KS LN +KLLHKRKGIPHRSPLK
Sbjct: 181 SEIESSISMAESTEEIKAWRTKSSLNAKKLLHKRKGIPHRSPLK 224

[Close]

BLAST of Carg25248 vs. TAIR10
Match: AT2G01818.1 (PLATZ transcription factor family protein)

HSP 1 Score: 201.8 bits (512), Expect = 4.4e-52
Identity = 107/221 (48.42%), Postives = 147/221 (66.52%), Query Frame = 0


Query: 9   KKRKAD--WLSSLLQSKFFGSCVHHQNNRKNEKNVFCIDCGIAICRHC----LISHCIHR 68
           +KR+++  W+ +LL S+FFG C++H+  RKNEKNVFCIDC + ICRHC      SH +HR
Sbjct: 5   EKRRSEEVWIETLLNSEFFGICMNHKYLRKNEKNVFCIDCNVEICRHCCNTVTDSHFLHR 64

Query: 69  RLQICKYVYQYVVRVPDLQNHLDCCNIQTYKINGEKAVHLSPRPQSKDSKPSTKLKFGGT 128
           RLQICKYVYQ V+R+ ++QN+ DC  IQTYKINGEKA+HL+ RPQ+KD++PSTK K G +
Sbjct: 65  RLQICKYVYQDVIRLLEIQNYFDCSEIQTYKINGEKAIHLNSRPQAKDARPSTKAKNGAS 124

Query: 129 CEACGRYIQDLPNRFCSIACKVSMVPVELNNQSCRCITSKSDPNEISWKENHNVEPNTSE 188
           C  C RYIQD PN FCSI+CK+S      + +   C + K + + +  KE+   E +  E
Sbjct: 125 CVTCKRYIQDHPNLFCSISCKISTP----SKKHKFCFSPKLEQSVLE-KEHSTQEGSLEE 184

Query: 189 MKS-SISMAESTEEIKAWQVKSGLNPRKLLHKRKGIPHRSP 223
            KS + S+ + +E+ +         P   + KRKGI  RSP
Sbjct: 185 KKSCTSSLTDVSEDSEVLLSDFSFRPLLRILKRKGISRRSP 220

[Close]

BLAST of Carg25248 vs. TAIR10
Match: AT2G12646.1 (PLATZ transcription factor family protein)

HSP 1 Score: 126.3 bits (316), Expect = 2.3e-29
Identity = 60/137 (43.80%), Postives = 83/137 (60.58%), Query Frame = 0


Query: 11  RKADWLSSLLQSKFFGSCVHHQNNRKNEKNVFCIDCGIAICRHCLISHCIHRRLQICKYV 70
           +K  WL +L   KFF  C +H+  +KNE+NV C+DC  ++C HC+ SH  HR LQ+ +YV
Sbjct: 4   QKPAWLDALYAEKFFVGCPYHETAKKNERNVCCLDCCTSLCPHCVPSHRFHRLLQVRRYV 63

Query: 71  YQYVVRVPDLQNHLDCCNIQTYKINGEKAVHLSPRPQSKDSKPSTKLKFGGTCEACGRYI 130
           Y  VVR+ DLQ  +DC N+Q Y IN  K V +  RPQ++  K +     G  C +C R +
Sbjct: 64  YHDVVRLEDLQKLIDCSNVQAYTINSAKVVFIKKRPQNRQFKGA-----GNYCTSCDRSL 123

Query: 131 QDLPNRFCSIACKVSMV 148
           Q+ P   CS+ CKV  V
Sbjct: 124 QE-PYIHCSLGCKVDFV 134

[Close]

BLAST of Carg25248 vs. TAIR10
Match: AT3G60670.1 (PLATZ transcription factor family protein)

HSP 1 Score: 122.1 bits (305), Expect = 4.4e-28
Identity = 73/206 (35.44%), Postives = 108/206 (52.43%), Query Frame = 0


Query: 15  WLSSLLQSKFFGSCVHHQNNRKNEKNVFCIDCGIAICRHCLISHCIHRRLQICKYVYQYV 74
           WL  LL+ KFF +C+ H++++KNEKN+ CIDC + IC HCL SH  HR LQI +YVY+ V
Sbjct: 9   WLEVLLKDKFFNACLDHEDDKKNEKNILCIDCCLTICPHCLSSHTSHRLLQIRRYVYRDV 68

Query: 75  VRVPDLQNHLDCCNIQTYKINGEKAVHLSPRPQSKDSKPSTKLKFGGTCEACGRYIQDLP 134
           +RV D    +DC  IQ Y  N  K V ++ RPQS+  + S     G  C  C R +Q  P
Sbjct: 69  LRVEDGSKLMDCSLIQPYTTNSSKVVFINERPQSRQFRGS-----GNICITCDRSLQS-P 128

Query: 135 NRFCSIACKVSMVPVELNNQS-----CRCITSKSDPNEISWKENHNVEPNTSEMKSSISM 194
             FC ++CK+S V +     S     C  +    +    +   +  +EP  S   SS S 
Sbjct: 129 YLFCCLSCKISDVIMRQRGLSGFLRVCNVLDLTDEVTTTT--PSSTLEPTGSNRTSSESS 188

Query: 195 AESTEEIKAWQVKSGLNPRKLLHKRK 216
               E++   Q  +     +++ K++
Sbjct: 189 GNEGEDMFWCQALACTATTEIVRKKR 206

[Close]

BLAST of Carg25248 vs. TAIR10
Match: AT1G31040.1 (PLATZ transcription factor family protein)

HSP 1 Score: 116.3 bits (290), Expect = 2.4e-26
Identity = 76/236 (32.20%), Postives = 114/236 (48.31%), Query Frame = 0


Query: 12  KADWLSSLLQSKFFGSCVHHQNNRKNEKNVFCIDCGIAICRHCLISHCIHRRLQICKYVY 71
           K  WL  L+   FF SC  H+  RK+EKNVFC+ C +++C HCL SH  H  LQ+ +YVY
Sbjct: 18  KPAWLEGLMAETFFSSCGIHETRRKSEKNVFCLLCCLSVCPHCLPSHRSHPLLQVRRYVY 77

Query: 72  QYVVRVPDLQNHLDCCNIQTYKINGEKAVHLSPRPQSKDSKPSTKLKFGGTCEACGRYIQ 131
             VVR+ DL+  +DC  +Q Y ING K + L+ R QS+    S        C  C R +Q
Sbjct: 78  HDVVRLSDLEKLIDCSYVQPYTINGAKVIFLNQRQQSRAKVSS------NVCFTCDRILQ 137

Query: 132 DLPNRFCSIACKVSMVPVELNNQSCRCITSKSDPNEISWKENHNVEPNTSEMKSSISMAE 191
           + P  FCS++CKV  +  + ++ S   I  + D ++ +++    +  +  +    IS  E
Sbjct: 138 E-PFHFCSLSCKVDYLSYQGDDLS--SILYRIDESDFTFE---GLRMDGHDQLGEISTME 197

Query: 192 STEEIKAW-------------------------QVKSGLNPRKLLHKRKGIPHRSP 223
             E+I                                G+    L ++RKG PHR+P
Sbjct: 198 DGEDILXXXXXXXXXXXXXXXXXXXXXXXXXXSNYLPGMVLSSLGNRRKGAPHRAP 241

[Close]

BLAST of Carg25248 vs. TAIR10
Match: AT4G17900.1 (PLATZ transcription factor family protein)

HSP 1 Score: 111.3 bits (277), Expect = 7.7e-25
Identity = 74/221 (33.48%), Postives = 114/221 (51.58%), Query Frame = 0


Query: 9   KKRKADWLSSLLQSKFFGSCVHHQNNRKNEKNVFCIDC-GIAICRHCLISHCIHRRLQIC 68
           + R   WL  LL+ +FF  C  H ++ K+E N++C+DC    +C  CL  H  HR +QI 
Sbjct: 30  ENRWPPWLKPLLKEQFFVHCKFHGDSHKSECNMYCLDCTNGPLCSLCLAHHKDHRTIQIR 89

Query: 69  KYVYQYVVRVPDLQNHLDCCNIQTYKINGEKAVHLSPRPQSKDSKPSTKLKFGGTCEACG 128
           +  Y  V+RV ++Q +LD   IQTY IN  K V L+ RPQ +  K  T      TC+ C 
Sbjct: 90  RSSYHDVIRVNEIQKYLDIGGIQTYVINSAKVVFLNERPQPRPGKGVT-----NTCKVCY 149

Query: 129 RYIQDLPNRFCSIACKVSMVPVELNNQSCRCITSKSDPNEISWKENHNVEPNTSEMKSSI 188
           R + D   RFCS+ CK++              TS+        K   N+   T +  SSI
Sbjct: 150 RSLVDDSFRFCSLGCKIAG-------------TSRGFE-----KGRENLLMETEDSSSSI 209

Query: 189 SMAESTEEIKAWQ-----VKSGLNPRKLLHKRKGIPHRSPL 224
           ++ ++   ++++      + +  N R ++ +RKGIPHRSP+
Sbjct: 210 AIGKNITNLQSFSPSTPPLTTSSNCR-IVKRRKGIPHRSPM 226

[Close]

BLAST of Carg25248 vs. TrEMBL
Match: tr|A0A1S3CSV3|A0A1S3CSV3_CUCME (uncharacterized protein LOC103504510 OS=Cucumis melo OX=3656 GN=LOC103504510 PE=4 SV=1)

HSP 1 Score: 421.0 bits (1081), Expect = 1.7e-114
Identity = 200/225 (88.89%), Postives = 214/225 (95.11%), Query Frame = 0


Query: 1   MAGCKIYLKKRKADWLSSLLQSKFFGSCVHHQNNRKNEKNVFCIDCGIAICRHCLISHCI 60
           MAGCKI+LKKRK DWL+SLLQSKFFGSCVHHQNNRKNEKNVFCIDCGIAICRHCLISHC+
Sbjct: 1   MAGCKIFLKKRKTDWLNSLLQSKFFGSCVHHQNNRKNEKNVFCIDCGIAICRHCLISHCV 60

Query: 61  HRRLQICKYVYQYVVRVPDLQNHLDCCNIQTYKINGEKAVHLSPRPQSKDSKPSTKLKFG 120
           HRRLQICKYVYQYVVRVPDLQ+HLDCCNIQTYKINGEKAVHL PRPQSKDSKPSTKLKFG
Sbjct: 61  HRRLQICKYVYQYVVRVPDLQDHLDCCNIQTYKINGEKAVHLCPRPQSKDSKPSTKLKFG 120

Query: 121 GTCEACGRYIQDLPNRFCSIACKVSMVPVELNNQSCRCITSKSDPNEISWKENHNVEPNT 180
           GTCEACGRYIQDLPNRFCSIACKVSMVP+ELNNQ CR I S+S+  +I WKENHN+E NT
Sbjct: 121 GTCEACGRYIQDLPNRFCSIACKVSMVPMELNNQCCRFIDSESNLKDIPWKENHNLEINT 180

Query: 181 SEMK-SSISMAESTEEIKAWQVKSGLNPRKLLHKRKGIPHRSPLK 225
           SEM+ SSIS+AESTEEIKAW+VK+ LNP+KLLHKRKGIPHRSPLK
Sbjct: 181 SEMESSSISVAESTEEIKAWRVKTILNPKKLLHKRKGIPHRSPLK 225

[Close]

BLAST of Carg25248 vs. TrEMBL
Match: tr|A0A0A0KPD0|A0A0A0KPD0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G550220 PE=4 SV=1)

HSP 1 Score: 421.0 bits (1081), Expect = 1.7e-114
Identity = 200/225 (88.89%), Postives = 213/225 (94.67%), Query Frame = 0


Query: 1   MAGCKIYLKKRKADWLSSLLQSKFFGSCVHHQNNRKNEKNVFCIDCGIAICRHCLISHCI 60
           MAGCKIYLKKRK DWL+SLLQSKFFGSCVHHQNNRKNEKNVFCIDCGIAICRHCLISHC+
Sbjct: 1   MAGCKIYLKKRKTDWLNSLLQSKFFGSCVHHQNNRKNEKNVFCIDCGIAICRHCLISHCV 60

Query: 61  HRRLQICKYVYQYVVRVPDLQNHLDCCNIQTYKINGEKAVHLSPRPQSKDSKPSTKLKFG 120
           HRRLQICKYVYQYVVRVPDLQ+HLDCCNIQTYKINGEKAVHLSPRPQSKDSKPSTKLKFG
Sbjct: 61  HRRLQICKYVYQYVVRVPDLQDHLDCCNIQTYKINGEKAVHLSPRPQSKDSKPSTKLKFG 120

Query: 121 GTCEACGRYIQDLPNRFCSIACKVSMVPVELNNQSCRCITSKSDPNEISWKENHNVEPNT 180
           GTCEACGRYIQDLPNRFCSIACKVSMVP+ELNNQ CR + S+ +  +I WKENHN+E NT
Sbjct: 121 GTCEACGRYIQDLPNRFCSIACKVSMVPMELNNQCCRFMDSEPNLKDIPWKENHNLEINT 180

Query: 181 SEMK-SSISMAESTEEIKAWQVKSGLNPRKLLHKRKGIPHRSPLK 225
           SEM+ SSIS+AESTEEIKAW+VK  LNP+KLLHKRKGIPHRSPLK
Sbjct: 181 SEMESSSISVAESTEEIKAWRVKMVLNPKKLLHKRKGIPHRSPLK 225

[Close]

BLAST of Carg25248 vs. TrEMBL
Match: tr|W9QTI6|W9QTI6_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_006762 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 5.4e-81
Identity = 150/222 (67.57%), Postives = 176/222 (79.28%), Query Frame = 0


Query: 3   GCKIYLKKRKADWLSSLLQSKFFGSCVHHQNNRKNEKNVFCIDCGIAICRHCLISHCIHR 62
           GCK+ LKK+K DWL++LL SKFF SCVHH + RKNEKN+FCIDC +  CRHC+ +HC+HR
Sbjct: 32  GCKLLLKKKKTDWLNALLHSKFFDSCVHHPDYRKNEKNLFCIDCNLGFCRHCVTAHCLHR 91

Query: 63  RLQICKYVYQYVVRVPDLQNHLDCCNIQTYKINGEKAVHLSPRPQSKDSKPSTKLKFGGT 122
           RLQICKYVY  VVR+ D+Q HLDC  IQTYKINGEKAVHL+PRPQSKD+KPSTK    G+
Sbjct: 92  RLQICKYVYHNVVRLQDMQKHLDCSRIQTYKINGEKAVHLNPRPQSKDAKPSTKSFCAGS 151

Query: 123 CEACGRYIQDLPNRFCSIACKVSMVPVELNNQSCRCITSK-SDPNEISWKENHNVEPNTS 182
           CEACGRYIQD PNRFCSIACKVS+VP+E  +QS   IT       ++S+KEN N E N S
Sbjct: 152 CEACGRYIQDPPNRFCSIACKVSLVPLEPKDQSQNFITVPIPQYGDLSFKENCNSETNLS 211

Query: 183 EMKSSISMAESTEEIKAWQVKSGLNPRKLLHKRKGIPHRSPL 224
           EM+SS+S+AES EE+ A  V S L PRKLL KRKGIP R+PL
Sbjct: 212 EMESSLSLAESGEEVHACWVSSALKPRKLLRKRKGIPFRAPL 253

[Close]

BLAST of Carg25248 vs. TrEMBL
Match: tr|M5XHZ9|M5XHZ9_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G335800 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 3.0e-79
Identity = 146/224 (65.18%), Postives = 178/224 (79.46%), Query Frame = 0


Query: 1   MAGCKIYLKKRKADWLSSLLQSKFFGSCVHHQNNRKNEKNVFCIDCGIAICRHCLISHCI 60
           M GCK+ +KK + DWL++LL SKFFGSC  H + RKNEKNVFCIDC I +CRHC+ +HC+
Sbjct: 1   MGGCKVCIKKNRTDWLNTLLLSKFFGSCGVHHDLRKNEKNVFCIDCSIRLCRHCMTAHCL 60

Query: 61  HRRLQICKYVYQYVVRVPDLQNHLDCCNIQTYKINGEKAVHLSPRPQSKDSKPSTKLKFG 120
           H +LQICKYVY  VVR+ ++Q HLDC  IQTYKINGEKAVHL+PRP +KD+KPSTK KFG
Sbjct: 61  HTKLQICKYVYHDVVRLQEIQKHLDCSKIQTYKINGEKAVHLNPRPLAKDAKPSTKAKFG 120

Query: 121 GTCEACGRYIQDLPNRFCSIACKVSMVPVELNNQSCRCI-TSKSDPNEISWKENHNVEPN 180
            +CEACGRY+QD+PNR+CSIACK S+VPV+  +QS + I  +     + S K N N E N
Sbjct: 121 ASCEACGRYLQDMPNRYCSIACKASIVPVKPEDQSHKFIAVTIPQYGDFSLKGNCNSETN 180

Query: 181 TSEMKSSISMAESTEEIKAWQVKSGLNPRKLLHKRKGIPHRSPL 224
            SEM+SSIS+AES+EE+ AW V S L PRKLLHKRKGIPHR+PL
Sbjct: 181 MSEMESSISLAESSEEMTAW-VCSALKPRKLLHKRKGIPHRAPL 223

[Close]

BLAST of Carg25248 vs. TrEMBL
Match: tr|A0A1Q3D3E0|A0A1Q3D3E0_CEPFO (PLATZ domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_30443 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 8.6e-79
Identity = 141/224 (62.95%), Postives = 179/224 (79.91%), Query Frame = 0


Query: 1   MAGCKIYLKKRKADWLSSLLQSKFFGSCVHHQNNRKNEKNVFCIDCGIAICRHCLISHCI 60
           M GC+I +K++++DWLS+LL SKFFGSC HH + RKNE+NVFCIDC    CRHC  +HC+
Sbjct: 1   MVGCRILIKEKRSDWLSTLLHSKFFGSCAHHHDLRKNEENVFCIDCSCGFCRHCTKAHCL 60

Query: 61  HRRLQICKYVYQYVVRVPDLQNHLDCCNIQTYKINGEKAVHLSPRPQSKDSKPSTKLKFG 120
           HRRLQICKYVYQ VVR+ D+  +LDC  IQTYKINGEKAVHL+PRPQ+KD+KPSTK K G
Sbjct: 61  HRRLQICKYVYQDVVRLHDMHKYLDCSKIQTYKINGEKAVHLNPRPQTKDAKPSTKAKTG 120

Query: 121 GTCEACGRYIQDLPNRFCSIACKVSMVPVELNNQSCRCIT-SKSDPNEISWKENHNVEPN 180
             CEACGRY+QDLPNRFCSIACK+S+VP++  +QS   IT S  D +++SWKEN+ VE +
Sbjct: 121 AACEACGRYLQDLPNRFCSIACKLSIVPLKPKDQSREIITFSIQDFSDLSWKENYGVERD 180

Query: 181 TSEMKSSISMAESTEEIKAWQVKSGLNPRKLLHKRKGIPHRSPL 224
            +   SS+S+++ +EE +AW + S L PRK LHKRKG+P R+PL
Sbjct: 181 MNTNASSLSLSDMSEETQAW-MSSTLKPRKKLHKRKGVPRRAPL 223

The following BLAST results are available for this feature:

BLAST of Carg25248 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022963423.1	9.5e-130	100.00	uncharacterized protein LOC111463631 [Cucurbita moschata] >XP_023545157.1 unchar...	[more]
XP_022990994.1	8.1e-129	99.55	uncharacterized protein LOC111487719 [Cucurbita maxima]	[more]
XP_004142823.1	2.5e-114	88.89	PREDICTED: uncharacterized protein LOC101210438 [Cucumis sativus] >KGN51458.1 hy...	[more]
XP_008467074.1	2.5e-114	88.89	PREDICTED: uncharacterized protein LOC103504510 [Cucumis melo]	[more]
XP_022146423.1	9.0e-112	87.50	uncharacterized protein LOC111015643 isoform X1 [Momordica charantia]	[more]

BLAST of Carg25248 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01818.1	4.4e-52	48.42	PLATZ transcription factor family protein	[more]
AT2G12646.1	2.3e-29	43.80	PLATZ transcription factor family protein	[more]
AT3G60670.1	4.4e-28	35.44	PLATZ transcription factor family protein	[more]
AT1G31040.1	2.4e-26	32.20	PLATZ transcription factor family protein	[more]
AT4G17900.1	7.7e-25	33.48	PLATZ transcription factor family protein	[more]

BLAST of Carg25248 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg25248 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CSV3\|A0A1S3CSV3_CUCME	1.7e-114	88.89	uncharacterized protein LOC103504510 OS=Cucumis melo OX=3656 GN=LOC103504510 PE=...	[more]
tr\|A0A0A0KPD0\|A0A0A0KPD0_CUCSA	1.7e-114	88.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G550220 PE=4 SV=1	[more]
tr\|W9QTI6\|W9QTI6_9ROSA	5.4e-81	67.57	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_006762 PE=4 SV=1	[more]
tr\|M5XHZ9\|M5XHZ9_PRUPE	3.0e-79	65.18	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G335800 PE=4 SV=1	[more]
tr\|A0A1Q3D3E0\|A0A1Q3D3E0_CEPFO	8.6e-79	62.95	PLATZ domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_30...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR000315	Znf_B-box
IPR006734	DUF597

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005622	intracellular
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25248-RA	Carg25248-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006734	Protein of unknown function DUF597	PFAM	PF04640	PLATZ	coord: 68..144 e-value: 2.9E-23 score: 82.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 170..189
None	No IPR available	PANTHER	PTHR31065:SF15	PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN	coord: 9..223
None	No IPR available	PANTHER	PTHR31065	FAMILY NOT NAMED	coord: 9..223
IPR000315	B-box-type zinc finger	PROSITE	PS50119	ZF_BBOX	coord: 28..66 score: 8.944

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25248	Cla005803	Watermelon (97103) v1	carwmB0883
Carg25248	Csa5G550220	Cucumber (Chinese Long) v2	carcuB0895
Carg25248	MELO3C005262	Melon (DHL92) v3.5.1	carmeB0868
Carg25248	ClCG01G006660	Watermelon (Charleston Gray)	carwcgB0856
Carg25248	CSPI05G19150	Wild cucumber (PI 183967)	carcpiB0915
Carg25248	Cucsa.012070	Cucumber (Gy14) v1	carcgyB0999
Carg25248	CmaCh04G021370	Cucurbita maxima (Rimu)	carcmaB1220
Carg25248	CmoCh04G022300	Cucurbita moschata (Rifu)	carcmoB1189
Carg25248	Lsi09G007020	Bottle gourd (USVL1VR-Ls)	carlsiB799
Carg25248	Cp4.1LG01g18550	Cucurbita pepo (Zucchini)	carcpeB1228
Carg25248	CsGy5G018590	Cucumber (Gy14) v2	carcgybB0867
Carg25248	MELO3C005262.2	Melon (DHL92) v3.6.1	carmedB0877
Carg25248	CsaV3_5G027910	Cucumber (Chinese Long) v3	carcucB0919
Carg25248	Cla97C01G006960	Watermelon (97103) v2	carwmbB0919
Carg25248	Bhi12G000839	Wax gourd	carwgoB1027

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25248	Silver-seed gourd	carcarB624
Carg25248	Cucurbita maxima (Rimu)	carcmaB1219
Carg25248	Cucurbita moschata (Rifu)	carcmoB1188
Carg25248	Cucurbita pepo (Zucchini)	carcpeB1227
Carg25248	Melon (DHL92) v3.5.1	carmeB0869
Carg25248	Melon (DHL92) v3.6.1	carmedB0878