Carg25179 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25179
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X2
Location	Cucurbita_argyrosperma_scaffold_199 : 196965 .. 199913 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTTCAGCTCAGTCGTGTCCAGTAGAATTTCCAGATCTCTTTTTTCTTTCATGGCTTCTGCTTGCCGAAGAATTGCGAGCAGAATCTCCCAAGCTTCCTTCAGAACACTTCTCCGTACAAATTCTCCGGCCAAATCTCCGTCTTCTTCGTTCCCTCTGCCGCCTAAATCCTCTGCACCTTCCGTTAGCCGATTCTCTCTCGCCAGGTATTTCTCTTTATCCTTTTATTTCTCCTTGTTTCTGTACATTATGTCGTTGCACTTGGTCCACTTTTGTTTCTTGTTTTCATTTTGATTTTTCTGATTGGTTCTACTACTGCTAGGTCTCCGTCGGAGCTGGGATGCGTTCAATCGCTTTTGCCTTTTCACAACGCGGTTGCTGGAGCGAGAATGATTTCCTGTCTGAGCACAAATTCGAGGAGTTGTCGTGCGCTTTCTCAGGGTACTACTCTCTGCTGACCCTCTCCTGGTCTCTAACATGAAATATTCTACTTTCTTTTGAATTGTGAGTAGCTTTTTTATGTATTACCTGTAGACTTTTCCTTTTCTTGCTCTGCAATTGTATGTCAGTATTTTTGTGATGGCATCTTCTGATTTTTGTTGTAGTTTTCATTGGTTCATTGCTCCGCAAATCGTGCACATTGTATGTGAAGTATCAACCATGTTCCATGATCTTACAATTTGATGTTTTTTTCTTTTTTGACGTCCTTTCTGGCATAAATTGGTACAATTATAGTTTAGAAGTTAGAGTACTGGATTGCTACTGATGCTTTAGGAAGATTTTGGTCAACTTGTATAAAAATGGAAGTCGAACTGAAGCTAGATCGTTTAAGTTGACCATCCCAGGAAGAGAAACCATCCTAGTTTTGGTTCTCCCTTTTTTGGTTTCTTTCTTTGTTGGTTTCAACTTTTGTACCCCAGTTCAACTGGTCTTTATCTCGAGTAAAATTAATTACTAGAACGATAAGGAGAGAATGAATGGAATGACTTTGGTTCTTGACTGGGGACCTTGAAACTGACTGGAGTATTTGGTTCCTGCAGGCACATAATATCAATTGTCAATATGCTTGAAAGAAATAGATTGGAAGTTTGTGGAGCTTTCCTATTATGGTGCAGTGTATCGATATCAAGTATGAAACTAATTATCTCATAGTAGTCCTAAAATGTCGAAGATATTCAAATTCCTATTATTATAACTTGCAAGGAACTAATGATCTGTCAGCGGTGGCTGGTTACCACTTTTAATTACAGTATAAAAAATGGAACTGTTACATGCTCTCTATTCAGCAGTAGTCATTTCCTGAATCTTTAAATCTAAAGAGTCTCCTACGGAAAACTTTTGACTTGAAAAGTCGGTTACCAAATTTAAGAGAACGGAATGACAGATTGGGTTTCCCCATAAATCAGCTTTGTGTCTGCAATCTAGTTCTCATCATCCTGAAGAAAACTATCTCGACAAGAATCTATTCAGTTCTCATGGAGTTCATGATGTTAGAATAAGGGGATGATCCAGTCTTTAGTTTTAGTTAATTCTGTTATATGAACTAACCGTTGTTTGTTTTATGAACGGCATCATTTTTTCTTACAATAATTGTGTGTAGCGAGCTTAAAAGATCGTACCTTCGAAGTTATGGCTCACAAATACTCTTATGATTGTTCTTATTATTCAACCCATTAATTTCTTTTATCAAATAATCTATATGACATAACTTCTCATTGCCCCAGATGCATTTGATGGTACGTGAGACATATTTGCTGTTTTTGAAGGTGGGCCAGTCACGCTATACTTCACTAATCTAGAAATGTCACTTTTGAGTGATGTGTAAGGGTTCCATAGATGTTAGTTCTTGGTGCCTTTGGTTTGCCTAATGTACATGTAACGATGCCCATATCATACTCCTTTAGTTCTGTGCCAAGCAAACCTTGACTATTCTCGTAACTATCTTACGGGACGACTATCTAACTCGAGAAAAATCCATATTACTTAAGGATCATATATCAGTTGGCATTGTTGACAATAATTTATGGATTGTTTTTGTTACTGTAGAACTAGATTGCCGCATCAGTTTTCTTGAATGAGATATGAAATGAATCATATTGCATTTTGGACTCCATTCCTGCTCTAGCTATTACTTACATTCGTAGCATATCTTCCTTATTTTTGTACTTGTATTCTGTGGCTGCAGAGCTAGGTTTATCCGTTCCAAGGTGACTTAATTGGGCAGATCACTGCAGTGACAAAGGGATGTCAGCAATGGCTTAGTGGATTTCTTTTAAGTACTGTGACCAATTCTGCTCAATTTGTTTAACTAATTTTGATTATTCCATATTCAGAATATGTTGAAATAAGAATATAGTGATTCTAGTTCTCATGGAAACTCAGAAAACAATATTTTTCGCCATTGTTGTGGGTCATAAATGTTTGATCTGTGTCATAGATATGTATGTTTCTTATTTACTGAGATACACTTCTTTTGACTTCCATGGAACAATATATCTTGTAAACAAATGGCGGCTGTTTTTCTTACTACTAGAACGAGCAGCCTACAAAATGAGGAATGACATATTTTGCATTGAAATCTTGTACAATCATTGTCATTCATGATCTTAGTTCTGTTAATGGGTTCCTTTTAAAATCAAAAACTTATGCAAAAGGAAAAAGAATCTATAATCATCTGCAGCTCCCAATTTGATTACTTTCTGCTACCTCTGCCTGTTTCAAATCCCTACGAGCGACACAGGCACCCTAAAGAGCTCACGAAACCGATCCGATCCACTCGAACCACACTCTGGTTTGTGTATTTGCCTTTTCTATATACATCCCCGCTTTGTCCCATCGGCCCAAACCATAGTTCAACAATACTCAGTAGTTGGTTTGATACCATAATCCTCAATTGGTTGTTTGTTTGTTTGAAGTACTGCATCATGATCTGATCTCCCATTGGTAGAA

mRNA sequence

CTTTTCAGCTCAGTCGTGTCCAGTAGAATTTCCAGATCTCTTTTTTCTTTCATGGCTTCTGCTTGCCGAAGAATTGCGAGCAGAATCTCCCAAGCTTCCTTCAGAACACTTCTCCGTACAAATTCTCCGGCCAAATCTCCGTCTTCTTCGTTCCCTCTGCCGCCTAAATCCTCTGCACCTTCCGTTAGCCGATTCTCTCTCGCCAGGTCTCCGTCGGAGCTGGGATGCGTTCAATCGCTTTTGCCTTTTCACAACGCGGTTGCTGGAGCGAGAATGATTTCCTGTCTGAGCACAAATTCGAGGAGTTGTCGTGCGCTTTCTCAGGGTACTACTCTCTGCTGACCCTCTCCTGGTCTCTAACATGAAATATTCTACTTTCTTTTGAATTAGCTAGGTTTATCCGTTCCAAGGTGACTTAATTGGGCAGATCACTGCAGTGACAAAGGGATGTCAGCAATGGCTTAGTGGATTTCTTTTAAGTACTGTGACCAATTCTGCTCAATTTGTTTAACTAATTTTGATTATTCCATATTCAGAATATGTTGAAATAAGAATATAGTGATTCTAGTTCTCATGGAAACTCAGAAAACAATATTTTTCGCCATTGTTGTGGGTCATAAATGTTTGATCTGTGTCATAGATATGTATGTTTCTTATTTACTGAGATACACTTCTTTTGACTTCCATGGAACAATATATCTTGTAAACAAATGGCGGCTGTTTTTCTTACTACTAGAACGAGCAGCCTACAAAATGAGGAATGACATATTTTGCATTGAAATCTTGTACAATCATTGTCATTCATGATCTTAGTTCTGTTAATGGGTTCCTTTTAAAATCAAAAACTTATGCAAAAGGAAAAAGAATCTATAATCATCTGCAGCTCCCAATTTGATTACTTTCTGCTACCTCTGCCTGTTTCAAATCCCTACGAGCGACACAGGCACCCTAAAGAGCTCACGAAACCGATCCGATCCACTCGAACCACACTCTGGTTTGTGTATTTGCCTTTTCTATATACATCCCCGCTTTGTCCCATCGGCCCAAACCATAGTTCAACAATACTCAGTAGTTGGTTTGATACCATAATCCTCAATTGGTTGTTTGTTTGTTTGAAGTACTGCATCATGATCTGATCTCCCATTGGTAGAA

Coding sequence (CDS)

ATGGCTTCTGCTTGCCGAAGAATTGCGAGCAGAATCTCCCAAGCTTCCTTCAGAACACTTCTCCGTACAAATTCTCCGGCCAAATCTCCGTCTTCTTCGTTCCCTCTGCCGCCTAAATCCTCTGCACCTTCCGTTAGCCGATTCTCTCTCGCCAGGTCTCCGTCGGAGCTGGGATGCGTTCAATCGCTTTTGCCTTTTCACAACGCGGTTGCTGGAGCGAGAATGATTTCCTGTCTGAGCACAAATTCGAGGAGTTGTCGTGCGCTTTCTCAGGGTACTACTCTCTGCTGA

Protein sequence

MASACRRIASRISQASFRTLLRTNSPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCVQSLLPFHNAVAGARMISCLSTNSRSCRALSQGTTLC

Homology

[Close]

BLAST of Carg25179 vs. NCBI nr
Match: XP_023538762.1 (uncharacterized protein LOC111799595 isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 174.1 bits (440), Expect = 2.3e-40
Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 0


Query: 1  MASACRRIASRISQASFRTLLRTNSPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV 60
          MASACRRIASRISQ+SFRTLLRT SPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV
Sbjct: 1  MASACRRIASRISQSSFRTLLRTASPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV 60

Query: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQGTTLC 97
          QSLLPFHNAVAGARMISCLSTNSRSCRALSQGTTLC
Sbjct: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQGTTLC 96

[Close]

BLAST of Carg25179 vs. NCBI nr
Match: XP_022937781.1 (uncharacterized protein LOC111444048 isoform X1 [Cucurbita moschata])

HSP 1 Score: 167.2 bits (422), Expect = 2.8e-38
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MASACRRIASRISQASFRTLLRTNSPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV 60
          MASACRRIASRISQ+SFRTLLRTNSPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV
Sbjct: 1  MASACRRIASRISQSSFRTLLRTNSPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV 60

Query: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQ 92
          QSLLPFHNAVAGARMISCLSTNSRSCRALSQ
Sbjct: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQ 91

[Close]

BLAST of Carg25179 vs. NCBI nr
Match: XP_022937856.1 (uncharacterized protein LOC111444048 isoform X2 [Cucurbita moschata])

HSP 1 Score: 167.2 bits (422), Expect = 2.8e-38
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MASACRRIASRISQASFRTLLRTNSPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV 60
          MASACRRIASRISQ+SFRTLLRTNSPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV
Sbjct: 1  MASACRRIASRISQSSFRTLLRTNSPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV 60

Query: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQ 92
          QSLLPFHNAVAGARMISCLSTNSRSCRALSQ
Sbjct: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQ 91

[Close]

BLAST of Carg25179 vs. NCBI nr
Match: XP_023538758.1 (uncharacterized protein LOC111799595 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023538760.1 uncharacterized protein LOC111799595 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 164.1 bits (414), Expect = 2.4e-37
Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1  MASACRRIASRISQASFRTLLRTNSPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV 60
          MASACRRIASRISQ+SFRTLLRT SPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV
Sbjct: 1  MASACRRIASRISQSSFRTLLRTASPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV 60

Query: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQ 92
          QSLLPFHNAVAGARMISCLSTNSRSCRALSQ
Sbjct: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQ 91

[Close]

BLAST of Carg25179 vs. NCBI nr
Match: XP_023538761.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 164.1 bits (414), Expect = 2.4e-37
Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1  MASACRRIASRISQASFRTLLRTNSPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV 60
          MASACRRIASRISQ+SFRTLLRT SPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV
Sbjct: 1  MASACRRIASRISQSSFRTLLRTASPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV 60

Query: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQ 92
          QSLLPFHNAVAGARMISCLSTNSRSCRALSQ
Sbjct: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQ 91

[Close]

BLAST of Carg25179 vs. TAIR10
Match: AT5G47455.4 (unknown protein)

HSP 1 Score: 80.5 bits (197), Expect = 6.3e-16
Identity = 49/98 (50.00%), Postives = 64/98 (65.31%), Query Frame = 0


Query: 7   RIASRISQASFRTLLRT----------NSPAKSPSSSFPLPPKSSAPSVSRFSLARSPSE 66
           R  SR S +SF++ +R+          +SPA + S+ F +P K +A  + RFS +R PSE
Sbjct: 4   RFMSRSSVSSFKSAIRSSFRNSPIGTGSSPAAASSAGFRIPSKPAASPLPRFSFSRCPSE 63

Query: 67  LGCVQSLLPFHNAVAGARMISCLSTNSRSCRALSQGTT 95
           LGCVQSLLP H+ VA AR+ SCLST SRS RAL+Q  T
Sbjct: 64  LGCVQSLLPLHSTVAAARLTSCLSTTSRSSRALTQDGT 101

[Close]

BLAST of Carg25179 vs. TAIR10
Match: AT4G17310.1 (unknown protein)

HSP 1 Score: 72.0 bits (175), Expect = 2.2e-13
Identity = 50/98 (51.02%), Postives = 59/98 (60.20%), Query Frame = 0


Query: 1  MASACRRIASRISQASFR--TLLRTNSPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELG 60
          MASACR++ +R S +S +                 F LP   S P+   FS +R PSELG
Sbjct: 1  MASACRKLFNRASVSSLKXXXXXXXXXXXXXXXXGFRLP---SQPT-RHFSFSRCPSELG 60

Query: 61 CVQSLLPFHNAVAGARMISCLSTNSRSCRALSQGTTLC 97
          CVQSLLP H+ VA AR+ SCLST SRS RALSQGT  C
Sbjct: 61 CVQSLLPLHSTVAAARLTSCLSTTSRSSRALSQGTLCC 94

[Close]

BLAST of Carg25179 vs. TAIR10
Match: AT5G11630.1 (unknown protein)

HSP 1 Score: 47.0 bits (110), Expect = 7.7e-06
Identity = 37/95 (38.95%), Postives = 57/95 (60.00%), Query Frame = 0


Query: 1  MASACRRIASRISQASFRTLLRTNSPA---KSPSSSFPLPPKSSAPSVSRFSLARSPSEL 60
          MAS CR + S+ + ++FR+ +  N P+   KS SS   +PP            +R   +L
Sbjct: 1  MASRCRSL-SKPAFSAFRSAM--NKPSIRPKSASSFIGVPPSP--------GFSRPIGQL 60

Query: 61 GCVQSLLPFHNAVAGARMISCLSTNSRSCRALSQG 93
          G +QSLLP ++AVA AR+ SCL  +S++ R+L+QG
Sbjct: 61 GSLQSLLPLYSAVASARLTSCLGIDSQNSRSLAQG 84

[Close]

BLAST of Carg25179 vs. TAIR10
Match: AT1G55205.2 (unknown protein)

HSP 1 Score: 45.4 bits (106), Expect = 2.2e-05
Identity = 40/97 (41.24%), Postives = 56/97 (57.73%), Query Frame = 0


Query: 1  MASACR--RIASRISQASFRTLLRTNSPAKSPSSSFPLPPKSSAPS--VSRFSLA-RSPS 60
          MAS+ +  R++S+I      +L +  S      SS P P KSS+PS   SR + + R P 
Sbjct: 1  MASSSKICRLSSKI-----HSLTQKLSKTNVHISSLPSPIKSSSPSSATSRINQSFRLPV 60

Query: 61 ELGCVQSLLPFHNAVAGARMISCLSTNSRSCRALSQG 93
          EL C  S+LP H+A+A AR+IS LS  S+S   + QG
Sbjct: 61 ELSCCLSMLPLHSAIASARLISSLSVESKSWGLVPQG 92

[Close]

BLAST of Carg25179 vs. TrEMBL
Match: tr|A0A1S3BKM3|A0A1S3BKM3_CUCME (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490878 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.8e-33
Identity = 82/96 (85.42%), Postives = 87/96 (90.62%), Query Frame = 0


Query: 1  MASACRRIASRISQASFRTLLRTNSPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV 60
          MASAC+RIASRISQ+SFRT +RTNS AKS SS FPLP KS+APSV RFSLARSPSELGCV
Sbjct: 1  MASACQRIASRISQSSFRTFVRTNSSAKSSSSQFPLPSKSTAPSVRRFSLARSPSELGCV 60

Query: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQGTTLC 97
          QSLLPFH+AVAGARMISCLSTNSRSCRALSQG   C
Sbjct: 61 QSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCC 96

[Close]

BLAST of Carg25179 vs. TrEMBL
Match: tr|A0A1S3BL94|A0A1S3BL94_CUCME (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490878 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.0e-32
Identity = 80/91 (87.91%), Postives = 85/91 (93.41%), Query Frame = 0


Query: 1  MASACRRIASRISQASFRTLLRTNSPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV 60
          MASAC+RIASRISQ+SFRT +RTNS AKS SS FPLP KS+APSV RFSLARSPSELGCV
Sbjct: 1  MASACQRIASRISQSSFRTFVRTNSSAKSSSSQFPLPSKSTAPSVRRFSLARSPSELGCV 60

Query: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQ 92
          QSLLPFH+AVAGARMISCLSTNSRSCRALSQ
Sbjct: 61 QSLLPFHDAVAGARMISCLSTNSRSCRALSQ 91

[Close]

BLAST of Carg25179 vs. TrEMBL
Match: tr|A0A0A0L1I6|A0A0A0L1I6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G019950 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.6e-32
Identity = 80/91 (87.91%), Postives = 85/91 (93.41%), Query Frame = 0


Query: 1  MASACRRIASRISQASFRTLLRTNSPAKSPSSSFPLPPKSSAPSVSRFSLARSPSELGCV 60
          MASAC+RIASRISQ+SFRT +RTNS AKS SS FPLP KS+APSV RFSLARSPSELGCV
Sbjct: 1  MASACQRIASRISQSSFRTFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLARSPSELGCV 60

Query: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQ 92
          QSLLPFH+AVAGARMISCLSTNSRSCRALSQ
Sbjct: 61 QSLLPFHDAVAGARMISCLSTNSRSCRALSQ 91

[Close]

BLAST of Carg25179 vs. TrEMBL
Match: tr|A0A067FD99|A0A067FD99_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034143mg PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 7.3e-19
Identity = 60/99 (60.61%), Postives = 71/99 (71.72%), Query Frame = 0


Query: 1  MASACRRIASRISQASFRTLLRTNSPAKSP---SSSFPLPPKSSAPSVSRFSLARSPSEL 60
          MAS+C R   R S +S ++  R+N+P KSP   S+ FPLP KSS   + RFSL+RSPSEL
Sbjct: 1  MASSCHRFIRRSSLSSIKSAFRSNAP-KSPTAASAPFPLPTKSSPSPLRRFSLSRSPSEL 60

Query: 61 GCVQSLLPFHNAVAGARMISCLSTNSRSCRALSQGTTLC 97
          GC QSLLP H+ VA ARM SCLS  S+SCRALSQGT  C
Sbjct: 61 GCAQSLLPLHSVVAAARMTSCLSAASKSCRALSQGTLCC 98

[Close]

BLAST of Carg25179 vs. TrEMBL
Match: tr|A0A2H5NTU6|A0A2H5NTU6_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_075350 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 7.3e-19
Identity = 60/99 (60.61%), Postives = 71/99 (71.72%), Query Frame = 0


Query: 1  MASACRRIASRISQASFRTLLRTNSPAKSP---SSSFPLPPKSSAPSVSRFSLARSPSEL 60
          MAS+C R   R S +S ++  R+N+P KSP   S+ FPLP KSS   + RFSL+RSPSEL
Sbjct: 1  MASSCHRFIRRSSLSSIKSAFRSNAP-KSPTAASAPFPLPTKSSPSPLRRFSLSRSPSEL 60

Query: 61 GCVQSLLPFHNAVAGARMISCLSTNSRSCRALSQGTTLC 97
          GC QSLLP H+ VA ARM SCLS  S+SCRALSQGT  C
Sbjct: 61 GCAQSLLPLHSVVAAARMTSCLSAASKSCRALSQGTLCC 98

The following BLAST results are available for this feature:

BLAST of Carg25179 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023538762.1	2.3e-40	97.92	uncharacterized protein LOC111799595 isoform X4 [Cucurbita pepo subsp. pepo]	[more]
XP_022937781.1	2.8e-38	98.90	uncharacterized protein LOC111444048 isoform X1 [Cucurbita moschata]	[more]
XP_022937856.1	2.8e-38	98.90	uncharacterized protein LOC111444048 isoform X2 [Cucurbita moschata]	[more]
XP_023538758.1	2.4e-37	97.80	uncharacterized protein LOC111799595 isoform X1 [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_023538761.1	2.4e-37	97.80	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 ...	[more]

BLAST of Carg25179 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G47455.4	6.3e-16	50.00	unknown protein	[more]
AT4G17310.1	2.2e-13	51.02	unknown protein	[more]
AT5G11630.1	7.7e-06	38.95	unknown protein	[more]
AT1G55205.2	2.2e-05	41.24	unknown protein	[more]

BLAST of Carg25179 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg25179 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BKM3\|A0A1S3BKM3_CUCME	1.8e-33	85.42	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 OS=Cu...	[more]
tr\|A0A1S3BL94\|A0A1S3BL94_CUCME	2.0e-32	87.91	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X2 OS=Cu...	[more]
tr\|A0A0A0L1I6\|A0A0A0L1I6_CUCSA	2.6e-32	87.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G019950 PE=4 SV=1	[more]
tr\|A0A067FD99\|A0A067FD99_CITSI	7.3e-19	60.61	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034143mg PE=4 SV=1	[more]
tr\|A0A2H5NTU6\|A0A2H5NTU6_CITUN	7.3e-19	60.61	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_075350 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25179-RA	Carg25179-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..47
None	No IPR available	PANTHER	PTHR33156:SF9	SUBFAMILY NOT NAMED	coord: 1..96
None	No IPR available	PANTHER	PTHR33156	FAMILY NOT NAMED	coord: 1..96

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25179	Cla005630	Watermelon (97103) v1	carwmB0526
Carg25179	Csa3G019950	Cucumber (Chinese Long) v2	carcuB0559
Carg25179	MELO3C013933	Melon (DHL92) v3.5.1	carmeB0535
Carg25179	ClCG10G002600	Watermelon (Charleston Gray)	carwcgB0513
Carg25179	CSPI03G02600	Wild cucumber (PI 183967)	carcpiB0565
Carg25179	Cucsa.320990	Cucumber (Gy14) v1	carcgyB0609
Carg25179	CmaCh06G007890	Cucurbita maxima (Rimu)	carcmaB0742
Carg25179	CmaCh16G011310	Cucurbita maxima (Rimu)	carcmaB0741
Carg25179	CmoCh06G008090	Cucurbita moschata (Rifu)	carcmoB0720
Carg25179	CmoCh16G011830	Cucurbita moschata (Rifu)	carcmoB0719
Carg25179	Lsi07G012870	Bottle gourd (USVL1VR-Ls)	carlsiB482
Carg25179	Cp4.1LG14g09360	Cucurbita pepo (Zucchini)	carcpeB0749
Carg25179	Cp4.1LG08g07410	Cucurbita pepo (Zucchini)	carcpeB0750
Carg25179	CsGy3G002530	Cucumber (Gy14) v2	carcgybB0536
Carg25179	MELO3C013933.2	Melon (DHL92) v3.6.1	carmedB0540
Carg25179	CsaV3_3G002630	Cucumber (Chinese Long) v3	carcucB0567
Carg25179	Cla97C10G187150	Watermelon (97103) v2	carwmbB0555
Carg25179	Bhi11G000147	Wax gourd	carwgoB0640

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg25179	Carg24855	Silver-seed gourd	carcarB434

The following block(s) are covering this gene:

None