Carg24855 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24855
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1
Location	Cucurbita_argyrosperma_scaffold_245 : 71845 .. 72257 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCGCTTGCCGAAGAATTGCGAGCAGAATCTCTCAATCCTCCATCAGAACAGTTGTTCGTACAAATTCGCCGCCCAAAGCTTCATCTTTTCCGTTCACTTTACCTTTCAATTGCACTGCACCATCTGTTCGCCGGTTCTCGCTCGCCAGGTAAATCTGGTTATCCTTTCATTTCTTCTTGTTTTGTGTATCTTGTTGTGAGTTGTTTCAATATTTTGTTTGTTTTTTTTTTTCAAAACTTCTTGATCTACTACTAGGGCCCCGTCGGAGCTGGGATGCATGCAATCTCTTTTGCCTTTTCACAACGCGGTTGCTGGAGCGAGAATGATTTCGTGTCTGAGTACAAATTCGAGGAGTTGTCGTGCGCTTTCTCAGGGTACTCTCTGCTGCACCTCTCCCAGCCTCTAA

mRNA sequence

ATGGCTTCCGCTTGCCGAAGAATTGCGAGCAGAATCTCTCAATCCTCCATCAGAACAGTTGTTCGTACAAATTCGCCGCCCAAAGCTTCATCTTTTCCGTTCACTTTACCTTTCAATTGCACTGCACCATCTGTTCGCCGGTTCTCGCTCGCCAGGGCCCCGTCGGAGCTGGGATGCATGCAATCTCTTTTGCCTTTTCACAACGCGGTTGCTGGAGCGAGAATGATTTCGTGTCTGAGTACAAATTCGAGGAGTTGTCGTGCGCTTTCTCAGGGTACTCTCTGCTGCACCTCTCCCAGCCTCTAA

Coding sequence (CDS)

ATGGCTTCCGCTTGCCGAAGAATTGCGAGCAGAATCTCTCAATCCTCCATCAGAACAGTTGTTCGTACAAATTCGCCGCCCAAAGCTTCATCTTTTCCGTTCACTTTACCTTTCAATTGCACTGCACCATCTGTTCGCCGGTTCTCGCTCGCCAGGGCCCCGTCGGAGCTGGGATGCATGCAATCTCTTTTGCCTTTTCACAACGCGGTTGCTGGAGCGAGAATGATTTCGTGTCTGAGTACAAATTCGAGGAGTTGTCGTGCGCTTTCTCAGGGTACTCTCTGCTGCACCTCTCCCAGCCTCTAA

Protein sequence

MASACRRIASRISQSSIRTVVRTNSPPKASSFPFTLPFNCTAPSVRRFSLARAPSELGCMQSLLPFHNAVAGARMISCLSTNSRSCRALSQGTLCCTSPSL

Homology

[Close]

BLAST of Carg24855 vs. NCBI nr
Match: XP_022923170.1 (uncharacterized protein LOC111430946 isoform X1 [Cucurbita moschata])

HSP 1 Score: 190.7 bits (483), Expect = 2.5e-45
Identity = 99/101 (98.02%), Postives = 100/101 (99.01%), Query Frame = 0


Query: 1   MASACRRIASRISQSSIRTVVRTNSPPKASSFPFTLPFNCTAPSVRRFSLARAPSELGCM 60
           MASACRRIASRISQSSIRTVVRTNSPPKASS PFTLPFNCTAPSVRRFSLARAPSELGC+
Sbjct: 1   MASACRRIASRISQSSIRTVVRTNSPPKASSSPFTLPFNCTAPSVRRFSLARAPSELGCV 60

Query: 61  QSLLPFHNAVAGARMISCLSTNSRSCRALSQGTLCCTSPSL 102
           QSLLPFHNAVAGARMISCLSTNSRSCRALSQGTLCCTSPSL
Sbjct: 61  QSLLPFHNAVAGARMISCLSTNSRSCRALSQGTLCCTSPSL 101

[Close]

BLAST of Carg24855 vs. NCBI nr
Match: XP_022965218.1 (uncharacterized protein LOC111465140 isoform X1 [Cucurbita maxima])

HSP 1 Score: 188.0 bits (476), Expect = 1.6e-44
Identity = 98/101 (97.03%), Postives = 99/101 (98.02%), Query Frame = 0


Query: 1   MASACRRIASRISQSSIRTVVRTNSPPKASSFPFTLPFNCTAPSVRRFSLARAPSELGCM 60
           MASACRRIASRISQSSIRTVVRTNSPPKASS PFTLPFNCTAPSVRRFSLA APSELGC+
Sbjct: 1   MASACRRIASRISQSSIRTVVRTNSPPKASSSPFTLPFNCTAPSVRRFSLAGAPSELGCV 60

Query: 61  QSLLPFHNAVAGARMISCLSTNSRSCRALSQGTLCCTSPSL 102
           QSLLPFHNAVAGARMISCLSTNSRSCRALSQGTLCCTSPSL
Sbjct: 61  QSLLPFHNAVAGARMISCLSTNSRSCRALSQGTLCCTSPSL 101

[Close]

BLAST of Carg24855 vs. NCBI nr
Match: XP_023551885.1 (uncharacterized protein LOC111809723 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 183.0 bits (463), Expect = 5.2e-43
Identity = 95/101 (94.06%), Postives = 98/101 (97.03%), Query Frame = 0


Query: 1   MASACRRIASRISQSSIRTVVRTNSPPKASSFPFTLPFNCTAPSVRRFSLARAPSELGCM 60
           MASACRRIASRISQSS RTVVRTNSPPKASS PFTLPFN TAPSVRRFSLA++PSELGC+
Sbjct: 1   MASACRRIASRISQSSFRTVVRTNSPPKASSSPFTLPFNSTAPSVRRFSLAKSPSELGCV 60

Query: 61  QSLLPFHNAVAGARMISCLSTNSRSCRALSQGTLCCTSPSL 102
           QSLLPFHNAVAGARMISCLSTNSRSCRALSQGTLCCTSPSL
Sbjct: 61  QSLLPFHNAVAGARMISCLSTNSRSCRALSQGTLCCTSPSL 101

[Close]

BLAST of Carg24855 vs. NCBI nr
Match: XP_022923171.1 (uncharacterized protein LOC111430946 isoform X2 [Cucurbita moschata])

HSP 1 Score: 171.0 bits (432), Expect = 2.0e-39
Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1  MASACRRIASRISQSSIRTVVRTNSPPKASSFPFTLPFNCTAPSVRRFSLARAPSELGCM 60
          MASACRRIASRISQSSIRTVVRTNSPPKASS PFTLPFNCTAPSVRRFSLARAPSELGC+
Sbjct: 1  MASACRRIASRISQSSIRTVVRTNSPPKASSSPFTLPFNCTAPSVRRFSLARAPSELGCV 60

Query: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQ 92
          QSLLPFHNAVAGARMISCLSTNSRSCRALSQ
Sbjct: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQ 91

[Close]

BLAST of Carg24855 vs. NCBI nr
Match: XP_022965219.1 (uncharacterized protein LOC111465140 isoform X2 [Cucurbita maxima])

HSP 1 Score: 168.3 bits (425), Expect = 1.3e-38
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MASACRRIASRISQSSIRTVVRTNSPPKASSFPFTLPFNCTAPSVRRFSLARAPSELGCM 60
          MASACRRIASRISQSSIRTVVRTNSPPKASS PFTLPFNCTAPSVRRFSLA APSELGC+
Sbjct: 1  MASACRRIASRISQSSIRTVVRTNSPPKASSSPFTLPFNCTAPSVRRFSLAGAPSELGCV 60

Query: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQ 92
          QSLLPFHNAVAGARMISCLSTNSRSCRALSQ
Sbjct: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQ 91

[Close]

BLAST of Carg24855 vs. TAIR10
Match: AT4G17310.1 (unknown protein)

HSP 1 Score: 91.3 bits (225), Expect = 3.7e-19
Identity = 56/103 (54.37%), Postives = 65/103 (63.11%), Query Frame = 0


Query: 1   MASACRRIASRISQSSIRTVVRTNSPPKASSFP--FTLPFNCTAPSVRRFSLARAPSELG 60
           MASACR++ +R S SS++                 F LP   T    R FS +R PSELG
Sbjct: 1   MASACRKLFNRASVSSLKXXXXXXXXXXXXXXXXGFRLPSQPT----RHFSFSRCPSELG 60

Query: 61  CMQSLLPFHNAVAGARMISCLSTNSRSCRALSQGTLCCTSPSL 102
           C+QSLLP H+ VA AR+ SCLST SRS RALSQGTLCCTSP L
Sbjct: 61  CVQSLLPLHSTVAAARLTSCLSTTSRSSRALSQGTLCCTSPDL 99

[Close]

BLAST of Carg24855 vs. TAIR10
Match: AT5G47455.4 (unknown protein)

HSP 1 Score: 78.2 bits (191), Expect = 3.3e-15
Identity = 47/95 (49.47%), Postives = 59/95 (62.11%), Query Frame = 0


Query: 7  RIASRISQSSIRTVVRT----------NSPPKASSFPFTLPFNCTAPSVRRFSLARAPSE 66
          R  SR S SS ++ +R+          +SP  ASS  F +P    A  + RFS +R PSE
Sbjct: 4  RFMSRSSVSSFKSAIRSSFRNSPIGTGSSPAAASSAGFRIPSKPAASPLPRFSFSRCPSE 63

Query: 67 LGCMQSLLPFHNAVAGARMISCLSTNSRSCRALSQ 92
          LGC+QSLLP H+ VA AR+ SCLST SRS RAL+Q
Sbjct: 64 LGCVQSLLPLHSTVAAARLTSCLSTTSRSSRALTQ 98

[Close]

BLAST of Carg24855 vs. TAIR10
Match: AT5G11630.1 (unknown protein)

HSP 1 Score: 51.2 bits (121), Expect = 4.3e-07
Identity = 40/103 (38.83%), Postives = 60/103 (58.25%), Query Frame = 0


Query: 1   MASACRRIASRISQSSIRTVVRTNS--PPKASSFPFTLPFNCTAPSVRRFSLARAPSELG 60
           MAS CR + S+ + S+ R+ +   S  P  ASSF    P    +P       +R   +LG
Sbjct: 1   MASRCRSL-SKPAFSAFRSAMNKPSIRPKSASSFIGVPP----SP-----GFSRPIGQLG 60

Query: 61  CMQSLLPFHNAVAGARMISCLSTNSRSCRALSQGTLCCTSPSL 102
            +QSLLP ++AVA AR+ SCL  +S++ R+L+QG LC  +P +
Sbjct: 61  SLQSLLPLYSAVASARLTSCLGIDSQNSRSLAQGMLCSANPGV 93

[Close]

BLAST of Carg24855 vs. TAIR10
Match: AT1G55205.2 (unknown protein)

HSP 1 Score: 41.6 bits (96), Expect = 3.4e-04
Identity = 31/92 (33.70%), Postives = 51/92 (55.43%), Query Frame = 0


Query: 1  MASACRRIASRISQSSIRTVVRTNSPPKASSFPFTLPFNCTAPSVRRFSLARAPSELGCM 60
          ++S    +  ++S++++  +    SP K+SS     P + T+   + F   R P EL C 
Sbjct: 10 LSSKIHSLTQKLSKTNVH-ISSLPSPIKSSS-----PSSATSRINQSF---RLPVELSCC 69

Query: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQG 93
           S+LP H+A+A AR+IS LS  S+S   + QG
Sbjct: 70 LSMLPLHSAIASARLISSLSVESKSWGLVPQG 92

[Close]

BLAST of Carg24855 vs. TAIR10
Match: AT1G70350.1 (unknown protein)

HSP 1 Score: 41.2 bits (95), Expect = 4.4e-04
Identity = 21/52 (40.38%), Postives = 32/52 (61.54%), Query Frame = 0


Query: 41  TAPSVRRFSLARAPSELGCMQSLLPFHNAVAGARMISCLSTNSRSCRALSQG 93
           T PS+RR + +R P EL    SL+P H+  A A + S LS ++++   LS+G
Sbjct: 49  TRPSLRRLTFSRVPVELSAGISLIPLHSVTASALLTSLLSLSNQNWSCLSEG 100

[Close]

BLAST of Carg24855 vs. TrEMBL
Match: tr|A0A1S3BKM3|A0A1S3BKM3_CUCME (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490878 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.6e-35
Identity = 84/101 (83.17%), Postives = 89/101 (88.12%), Query Frame = 0


Query: 1   MASACRRIASRISQSSIRTVVRTNSPPKASSFPFTLPFNCTAPSVRRFSLARAPSELGCM 60
           MASAC+RIASRISQSS RT VRTNS  K+SS  F LP   TAPSVRRFSLAR+PSELGC+
Sbjct: 1   MASACQRIASRISQSSFRTFVRTNSSAKSSSSQFPLPSKSTAPSVRRFSLARSPSELGCV 60

Query: 61  QSLLPFHNAVAGARMISCLSTNSRSCRALSQGTLCCTSPSL 102
           QSLLPFH+AVAGARMISCLSTNSRSCRALSQG LCCTSP L
Sbjct: 61  QSLLPFHDAVAGARMISCLSTNSRSCRALSQGILCCTSPGL 101

[Close]

BLAST of Carg24855 vs. TrEMBL
Match: tr|A0A0A0L1I6|A0A0A0L1I6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G019950 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.8e-31
Identity = 77/91 (84.62%), Postives = 82/91 (90.11%), Query Frame = 0


Query: 1  MASACRRIASRISQSSIRTVVRTNSPPKASSFPFTLPFNCTAPSVRRFSLARAPSELGCM 60
          MASAC+RIASRISQSS RT VRTNS  K+SS PF LP   TAPSVRRFSLAR+PSELGC+
Sbjct: 1  MASACQRIASRISQSSFRTFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLARSPSELGCV 60

Query: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQ 92
          QSLLPFH+AVAGARMISCLSTNSRSCRALSQ
Sbjct: 61 QSLLPFHDAVAGARMISCLSTNSRSCRALSQ 91

[Close]

BLAST of Carg24855 vs. TrEMBL
Match: tr|A0A1S3BL94|A0A1S3BL94_CUCME (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490878 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.5e-30
Identity = 76/91 (83.52%), Postives = 81/91 (89.01%), Query Frame = 0


Query: 1  MASACRRIASRISQSSIRTVVRTNSPPKASSFPFTLPFNCTAPSVRRFSLARAPSELGCM 60
          MASAC+RIASRISQSS RT VRTNS  K+SS  F LP   TAPSVRRFSLAR+PSELGC+
Sbjct: 1  MASACQRIASRISQSSFRTFVRTNSSAKSSSSQFPLPSKSTAPSVRRFSLARSPSELGCV 60

Query: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQ 92
          QSLLPFH+AVAGARMISCLSTNSRSCRALSQ
Sbjct: 61 QSLLPFHDAVAGARMISCLSTNSRSCRALSQ 91

[Close]

BLAST of Carg24855 vs. TrEMBL
Match: tr|V4TJG5|V4TJG5_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10023003mg PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.4e-23
Identity = 64/103 (62.14%), Postives = 76/103 (73.79%), Query Frame = 0


Query: 1   MASACRRIASRISQSSIRTVVRTNSP--PKASSFPFTLPFNCTAPSVRRFSLARAPSELG 60
           MAS+C R   R S SSI++  R+N+P  P A+S PF LP   +   +RRFSL+R+PSELG
Sbjct: 1   MASSCHRFIRRSSLSSIKSAFRSNAPKSPTAASAPFRLPTKSSPSPLRRFSLSRSPSELG 60

Query: 61  CMQSLLPFHNAVAGARMISCLSTNSRSCRALSQGTLCCTSPSL 102
           C QSLLP H+ VA ARM SCLS  S+SCRALSQGTLCCTSP L
Sbjct: 61  CAQSLLPLHSVVAAARMTSCLSAASKSCRALSQGTLCCTSPGL 103

[Close]

BLAST of Carg24855 vs. TrEMBL
Match: tr|A0A067FD99|A0A067FD99_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034143mg PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.4e-23
Identity = 64/103 (62.14%), Postives = 76/103 (73.79%), Query Frame = 0


Query: 1   MASACRRIASRISQSSIRTVVRTNSP--PKASSFPFTLPFNCTAPSVRRFSLARAPSELG 60
           MAS+C R   R S SSI++  R+N+P  P A+S PF LP   +   +RRFSL+R+PSELG
Sbjct: 1   MASSCHRFIRRSSLSSIKSAFRSNAPKSPTAASAPFPLPTKSSPSPLRRFSLSRSPSELG 60

Query: 61  CMQSLLPFHNAVAGARMISCLSTNSRSCRALSQGTLCCTSPSL 102
           C QSLLP H+ VA ARM SCLS  S+SCRALSQGTLCCTSP L
Sbjct: 61  CAQSLLPLHSVVAAARMTSCLSAASKSCRALSQGTLCCTSPGL 103

The following BLAST results are available for this feature:

BLAST of Carg24855 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022923170.1	2.5e-45	98.02	uncharacterized protein LOC111430946 isoform X1 [Cucurbita moschata]	[more]
XP_022965218.1	1.6e-44	97.03	uncharacterized protein LOC111465140 isoform X1 [Cucurbita maxima]	[more]
XP_023551885.1	5.2e-43	94.06	uncharacterized protein LOC111809723 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022923171.1	2.0e-39	97.80	uncharacterized protein LOC111430946 isoform X2 [Cucurbita moschata]	[more]
XP_022965219.1	1.3e-38	96.70	uncharacterized protein LOC111465140 isoform X2 [Cucurbita maxima]	[more]

BLAST of Carg24855 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G17310.1	3.7e-19	54.37	unknown protein	[more]
AT5G47455.4	3.3e-15	49.47	unknown protein	[more]
AT5G11630.1	4.3e-07	38.83	unknown protein	[more]
AT1G55205.2	3.4e-04	33.70	unknown protein	[more]
AT1G70350.1	4.4e-04	40.38	unknown protein	[more]

BLAST of Carg24855 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg24855 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BKM3\|A0A1S3BKM3_CUCME	2.6e-35	83.17	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 OS=Cu...	[more]
tr\|A0A0A0L1I6\|A0A0A0L1I6_CUCSA	1.8e-31	84.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G019950 PE=4 SV=1	[more]
tr\|A0A1S3BL94\|A0A1S3BL94_CUCME	1.5e-30	83.52	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X2 OS=Cu...	[more]
tr\|V4TJG5\|V4TJG5_9ROSI	1.4e-23	62.14	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10023003mg PE=4 ...	[more]
tr\|A0A067FD99\|A0A067FD99_CITSI	1.4e-23	62.14	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034143mg PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24855-RA	Carg24855-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33156:SF9	SUBFAMILY NOT NAMED	coord: 1..100
None	No IPR available	PANTHER	PTHR33156	FAMILY NOT NAMED	coord: 1..100

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24855	Cla005630	Watermelon (97103) v1	carwmB0414
Carg24855	Csa3G019950	Cucumber (Chinese Long) v2	carcuB0448
Carg24855	MELO3C013933	Melon (DHL92) v3.5.1	carmeB0424
Carg24855	ClCG10G002600	Watermelon (Charleston Gray)	carwcgB0410
Carg24855	CSPI03G02600	Wild cucumber (PI 183967)	carcpiB0453
Carg24855	Cucsa.320990	Cucumber (Gy14) v1	carcgyB0483
Carg24855	CmaCh06G007890	Cucurbita maxima (Rimu)	carcmaB0580
Carg24855	CmaCh16G011310	Cucurbita maxima (Rimu)	carcmaB0579
Carg24855	CmoCh06G008090	Cucurbita moschata (Rifu)	carcmoB0564
Carg24855	CmoCh16G011830	Cucurbita moschata (Rifu)	carcmoB0563
Carg24855	Lsi07G012870	Bottle gourd (USVL1VR-Ls)	carlsiB379
Carg24855	Cp4.1LG14g09360	Cucurbita pepo (Zucchini)	carcpeB0585
Carg24855	Cp4.1LG08g07410	Cucurbita pepo (Zucchini)	carcpeB0586
Carg24855	CsGy3G002530	Cucumber (Gy14) v2	carcgybB0424
Carg24855	MELO3C013933.2	Melon (DHL92) v3.6.1	carmedB0427
Carg24855	CsaV3_3G002630	Cucumber (Chinese Long) v3	carcucB0449
Carg24855	Cla97C10G187150	Watermelon (97103) v2	carwmbB0440
Carg24855	Bhi11G000147	Wax gourd	carwgoB0503

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg24855	Carg25179	Silver-seed gourd	carcarB434

The following block(s) are covering this gene:

None