Carg25026 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25026
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Dormancy/auxin associated family protein
Location	Cucurbita_argyrosperma_scaffold_176 : 229945 .. 231139 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTCACTCTCTCTGACCCTTTTCTCATCGGAACTCTCTCTTTCTCTCTCTCTCTCTCCATCATGGGGCTACTGGACCAGCTGTGGGACGACACGCTTGCCGGACCGATGCCGGACTCCGGTCTGGGAAAGCTCCGCAAGCACCCATCCTTCACTTCCCGGTCCACCGCCGTCAAGGGTACGCCGCCACGGACCATAATTTAAAACCACAAATTTCATTACAAATTTCGCTTTATAAAAATTTGAACTTTAATTTAATTGACTTAAAAAGAGTTTAATTAACTCAAATTTGGCTTTAATGGTGTTGGGCAGAATCCAATGGGAAGAGTTACGAGGAAGGAACGCCGCCGTCCTCGTCGGAGGAGCCACTTAAAGTTTCCAGACGAATTATGATCGTAAAGCCGCCGGGTTATCAGTACGGTTCGCCGCCGGTTTCGCCGGCCGGCTCCTCCACGCCGCCGCTTTCTCCTTTTTCCGGTAATTTCTAGAGCCTTCTTTCTGTTAAAGCTGAAAACTATAATTACATTATCGGCGGAGGGAGGCGGAGTTATCCACAAAGTGAGGAGATCTGGACCGGTTTTTTGTCGTTTTGTGGAGTTGTCACTTTATCCGTGGACAATCCTTTCCGAGTAGTAATAATTAAGTGTGGGGTATGAAATGACCATAATACCCTCCATGCATGACTTAGTCTTCCTATGTCTATTCTATTACTTATCCAATAAGTTCATAGCTTTTATTTGACGTCTAATATCATTTGTTTGGAGTTTTTCTTTTTTATTTTTGTTGACAAATTTATCAATATTATGGAGGTAGAGAATCATTCCGATTTCGAAGAAGATCGACGTCAGATGCTTACGAGAAGACGACAAGCGAAGTCGGACCTCGGACTCCTACTTCTCCTTATGACATGCGAGATATGATATGATATGATATGATATGAATTCGTGATCTTCTTCAGCTTGATGGGTCGATGACCGATGATGACAATAATGTAATATGAGTCCTTAAATAGTGTTAGCTTTTTGTTGAGAAATGTCGAGAACGGAGTCGTGAGTTTATGTGTAATAGTTCTAATTATGTGTTTGGGTTTGTTACGAAGTGTGTGTGTTTGTGGGCATGTTCTTGTGTATATGAATGAGTGATGGTTGTAGTTATCACTTGTTATAATGCCTCAATTAACAATAATGGTGTTTTTTT

mRNA sequence

CCTCACTCTCTCTGACCCTTTTCTCATCGGAACTCTCTCTTTCTCTCTCTCTCTCTCCATCATGGGGCTACTGGACCAGCTGTGGGACGACACGCTTGCCGGACCGATGCCGGACTCCGGTCTGGGAAAGCTCCGCAAGCACCCATCCTTCACTTCCCGGTCCACCGCCGTCAAGGAATCCAATGGGAAGAGTTACGAGGAAGGAACGCCGCCGTCCTCGTCGGAGGAGCCACTTAAAGTTTCCAGACGAATTATGATCGTAAAGCCGCCGGGTTATCAGTACGGTTCGCCGCCGGTTTCGCCGGCCGGCTCCTCCACGCCGCCGCTTTCTCCTTTTTCCGGTAATTTCTAGAGCCTTCTTTCTGTTAAAGCTGAAAACTATAATTACATTATCGGCGGAGGGAGGCGGAGTTATCCACAAAGTGAGGAGATCTGGACCGGTTTTTTGTCGTTTTGTGGAGTTGTCACTTTATCCGTGGACAATCCTTTCCGAGTAGTAATAATTAAGTGTGGGGTATGAAATGACCATAATACCCTCCATGCATGACTTAGTCTTCCTATGTCTATTCTATTACTTATCCAATAAGTTCATAGCTTTTATTTGACGTCTAATATCATTTGTTTGGAGTTTTTCTTTTTTATTTTTGTTGACAAATTTATCAATATTATGGAGGTAGAGAATCATTCCGATTTCGAAGAAGATCGACGTCAGATGCTTACGAGAAGACGACAAGCGAAGTCGGACCTCGGACTCCTACTTCTCCTTATGACATGCGAGATATGATATGATATGATATGATATGAATTCGTGATCTTCTTCAGCTTGATGGGTCGATGACCGATGATGACAATAATGTAATATGAGTCCTTAAATAGTGTTAGCTTTTTGTTGAGAAATGTCGAGAACGGAGTCGTGAGTTTATGTGTAATAGTTCTAATTATGTGTTTGGGTTTGTTACGAAGTGTGTGTGTTTGTGGGCATGTTCTTGTGTATATGAATGAGTGATGGTTGTAGTTATCACTTGTTATAATGCCTCAATTAACAATAATGGTGTTTTTTT

Coding sequence (CDS)

ATGGGGCTACTGGACCAGCTGTGGGACGACACGCTTGCCGGACCGATGCCGGACTCCGGTCTGGGAAAGCTCCGCAAGCACCCATCCTTCACTTCCCGGTCCACCGCCGTCAAGGAATCCAATGGGAAGAGTTACGAGGAAGGAACGCCGCCGTCCTCGTCGGAGGAGCCACTTAAAGTTTCCAGACGAATTATGATCGTAAAGCCGCCGGGTTATCAGTACGGTTCGCCGCCGGTTTCGCCGGCCGGCTCCTCCACGCCGCCGCTTTCTCCTTTTTCCGGTAATTTCTAG

Protein sequence

MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNGKSYEEGTPPSSSEEPLKVSRRIMIVKPPGYQYGSPPVSPAGSSTPPLSPFSGNF

Homology

[Close]

BLAST of Carg25026 vs. NCBI nr
Match: XP_022925438.1 (dormancy-associated protein homolog 3-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 190.3 bits (482), Expect = 3.1e-45
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNGKSYEEGTPPSSSEEPLKV 60
          MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNGKSYEEGTPPSSSEEPLKV
Sbjct: 1  MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNGKSYEEGTPPSSSEEPLKV 60

Query: 61 SRRIMIVKPPGYQYGSPPVSPAGSSTPPLSPFSG 95
          SRRIMIVKPPGYQYGSPPVSPAGSSTPPLSPFSG
Sbjct: 61 SRRIMIVKPPGYQYGSPPVSPAGSSTPPLSPFSG 94

[Close]

BLAST of Carg25026 vs. NCBI nr
Match: XP_022925449.1 (dormancy-associated protein homolog 3-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 189.5 bits (480), Expect = 5.3e-45
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNGKSYEEGTPPSSSEEPLKV 60
          MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNGKSYEEGTPPSSSEEPLKV
Sbjct: 1  MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNGKSYEEGTPPSSSEEPLKV 60

Query: 61 SRRIMIVKPPGYQYGSPPVSPAGSSTPPLSPFSGN 96
          SRRIMIVKPPGYQYGSPPVSPAGSSTPPLSPFS N
Sbjct: 61 SRRIMIVKPPGYQYGSPPVSPAGSSTPPLSPFSEN 95

[Close]

BLAST of Carg25026 vs. NCBI nr
Match: XP_022970123.1 (dormancy-associated protein homolog 3-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 187.6 bits (475), Expect = 2.0e-44
Identity = 92/94 (97.87%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNGKSYEEGTPPSSSEEPLKV 60
          MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNGKSYEEGTPPSS+EEPLKV
Sbjct: 1  MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNGKSYEEGTPPSSTEEPLKV 60

Query: 61 SRRIMIVKPPGYQYGSPPVSPAGSSTPPLSPFSG 95
          SRRIMIVKPPGYQYGSPPVSP GSSTPPLSPFSG
Sbjct: 61 SRRIMIVKPPGYQYGSPPVSPGGSSTPPLSPFSG 94

[Close]

BLAST of Carg25026 vs. NCBI nr
Match: XP_023530291.1 (dormancy-associated protein homolog 3-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 187.6 bits (475), Expect = 2.0e-44
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNGKSYEEGTPPSSSEEPLKV 60
          MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNGKSY EGTPPSSSEEPLKV
Sbjct: 1  MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNGKSYGEGTPPSSSEEPLKV 60

Query: 61 SRRIMIVKPPGYQYGSPPVSPAGSSTPPLSPFSG 95
          SRRIMIVKPPGYQYGSPPVSPAGSSTPPLSPFSG
Sbjct: 61 SRRIMIVKPPGYQYGSPPVSPAGSSTPPLSPFSG 94

[Close]

BLAST of Carg25026 vs. NCBI nr
Match: XP_022970131.1 (dormancy-associated protein homolog 3-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 186.8 bits (473), Expect = 3.4e-44
Identity = 92/95 (96.84%), Postives = 93/95 (97.89%), Query Frame = 0


Query: 1  MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNGKSYEEGTPPSSSEEPLKV 60
          MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNGKSYEEGTPPSS+EEPLKV
Sbjct: 1  MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNGKSYEEGTPPSSTEEPLKV 60

Query: 61 SRRIMIVKPPGYQYGSPPVSPAGSSTPPLSPFSGN 96
          SRRIMIVKPPGYQYGSPPVSP GSSTPPLSPFS N
Sbjct: 61 SRRIMIVKPPGYQYGSPPVSPGGSSTPPLSPFSEN 95

[Close]

BLAST of Carg25026 vs. TAIR10
Match: AT1G56220.3 (Dormancy/auxin associated family protein)

HSP 1 Score: 99.4 bits (246), Expect = 1.3e-21
Identity = 55/95 (57.89%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 1  MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKE----SNGKSYEEGTPPSSSEE 60
          MGLLD LWDDT+AGP P++GLGKLRKH +F+ R ++  +     + +SY E + P   EE
Sbjct: 1  MGLLDHLWDDTVAGPRPENGLGKLRKHHTFSFRPSSGNDQSEAGSARSYGEDSLP---EE 60

Query: 61 PLKVSRRIMIVKPPGYQYGSPPVSPAGSSTPPLSP 92
           +KV+R IMI+KPPGYQ  S P SPAG STPPLSP
Sbjct: 61 AVKVTRSIMIIKPPGYQGSSAPASPAG-STPPLSP 91

[Close]

BLAST of Carg25026 vs. TAIR10
Match: AT1G54070.1 (Dormancy/auxin associated family protein)

HSP 1 Score: 55.1 bits (131), Expect = 2.8e-08
Identity = 39/98 (39.80%), Postives = 51/98 (52.04%), Query Frame = 0


Query: 1  MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNGKSYEEGTPPSSSEEPLKV 60
          MG L +LWD+T+AGP PD+GLGKLRKH S              S    +PPS S +  +V
Sbjct: 1  MGFLHKLWDETVAGPTPDNGLGKLRKHDSL-------------STVRSSPPSLSSD--QV 60

Query: 61 SRRIMIVKPPGYQYG-----SPPVSPAGSSTPPLSPFS 94
          +R IM+ K      G       P SP  SS+ P +P +
Sbjct: 61 TRSIMVTKGNNNVRGLRKLKMDPDSPTCSSSNPGTPLT 83

[Close]

BLAST of Carg25026 vs. TAIR10
Match: AT1G28330.5 (dormancy-associated protein-like 1)

HSP 1 Score: 44.3 bits (103), Expect = 5.0e-05
Identity = 18/26 (69.23%), Postives = 22/26 (84.62%), Query Frame = 0


Query: 1  MGLLDQLWDDTLAGPMPDSGLGKLRK 27
          M LL++LWDD +AGP PD GLG+LRK
Sbjct: 1  MVLLEKLWDDVVAGPQPDRGLGRLRK 26

[Close]

BLAST of Carg25026 vs. Swiss-Prot
Match: sp|Q8LD26|DRMH3_ARATH (Dormancy-associated protein homolog 3 OS=Arabidopsis thaliana OX=3702 GN=At1g56220 PE=1 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 4.7e-21
Identity = 56/96 (58.33%), Postives = 70/96 (72.92%), Query Frame = 0


Query: 1  MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKE----SNGKSYEEGTPPSSSEE 60
          MGLLD LWDDT+AGP P++GLGKLRKH +F+ R ++  +     + +SY E + P   EE
Sbjct: 1  MGLLDHLWDDTVAGPRPENGLGKLRKHHTFSFRPSSGNDQSEAGSARSYGEDSLP---EE 60

Query: 61 PLKVSRRIMIVKPPGYQYGSPPVSPAGSSTPPLSPF 93
           +KV+R IMI+KPPGYQ  S P SPAG STPPLSPF
Sbjct: 61 AVKVTRSIMIIKPPGYQGSSAPASPAG-STPPLSPF 92

[Close]

BLAST of Carg25026 vs. Swiss-Prot
Match: sp|F4HV65|DRMH4_ARATH (Dormancy-associated protein homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g54070 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.1e-07
Identity = 39/98 (39.80%), Postives = 51/98 (52.04%), Query Frame = 0


Query: 1  MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNGKSYEEGTPPSSSEEPLKV 60
          MG L +LWD+T+AGP PD+GLGKLRKH S              S    +PPS S +  +V
Sbjct: 1  MGFLHKLWDETVAGPTPDNGLGKLRKHDSL-------------STVRSSPPSLSSD--QV 60

Query: 61 SRRIMIVKPPGYQYG-----SPPVSPAGSSTPPLSPFS 94
          +R IM+ K      G       P SP  SS+ P +P +
Sbjct: 61 TRSIMVTKGNNNVRGLRKLKMDPDSPTCSSSNPGTPLT 83

[Close]

BLAST of Carg25026 vs. Swiss-Prot
Match: sp|Q05349|12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa OX=3747 PE=2 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 9.0e-04
Identity = 19/28 (67.86%), Postives = 22/28 (78.57%), Query Frame = 0


Query: 1  MGLLDQLWDDTLAGPMPDSGLGKLRKHP 29
          M LLD+LWDD +AGP P+ GLG LRK P
Sbjct: 1  MVLLDKLWDDIVAGPQPERGLGMLRKVP 28

[Close]

BLAST of Carg25026 vs. Swiss-Prot
Match: sp|B9DGG8|DRM1_ARATH (Dormancy-associated protein 1 OS=Arabidopsis thaliana OX=3702 GN=DRM1 PE=1 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 9.0e-04
Identity = 18/26 (69.23%), Postives = 22/26 (84.62%), Query Frame = 0


Query: 1  MGLLDQLWDDTLAGPMPDSGLGKLRK 27
          M LL++LWDD +AGP PD GLG+LRK
Sbjct: 1  MVLLEKLWDDVVAGPQPDRGLGRLRK 26

[Close]

BLAST of Carg25026 vs. TrEMBL
Match: tr|A0A061FAK4|A0A061FAK4_THECC (Dormancy/auxin associated family protein isoform 4 OS=Theobroma cacao OX=3641 GN=TCM_026669 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 7.3e-27
Identity = 68/98 (69.39%), Postives = 80/98 (81.63%), Query Frame = 0


Query: 1  MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNG---KSYEEGTPPSSSEEP 60
          MGLLDQLWDDT+AGP PD+GLGKLRKH +FT R ++ KES+G   +SY + T    SEEP
Sbjct: 1  MGLLDQLWDDTVAGPRPDNGLGKLRKHSTFTFRPSSAKESDGGSVRSYGDET----SEEP 60

Query: 61 LKVSRRIMIVKPPGYQYGSPPVSPAGSSTPPLSPFSGN 96
           +V+R IMIVKPPGYQ GSPP+SPAG STPP+SPFSGN
Sbjct: 61 TRVTRSIMIVKPPGYQNGSPPISPAG-STPPVSPFSGN 93

[Close]

BLAST of Carg25026 vs. TrEMBL
Match: tr|A0A061F398|A0A061F398_THECC (Drm3-like protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_026669 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 3.6e-26
Identity = 67/97 (69.07%), Postives = 79/97 (81.44%), Query Frame = 0


Query: 1  MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNG---KSYEEGTPPSSSEEP 60
          MGLLDQLWDDT+AGP PD+GLGKLRKH +FT R ++ KES+G   +SY + T    SEEP
Sbjct: 1  MGLLDQLWDDTVAGPRPDNGLGKLRKHSTFTFRPSSAKESDGGSVRSYGDET----SEEP 60

Query: 61 LKVSRRIMIVKPPGYQYGSPPVSPAGSSTPPLSPFSG 95
           +V+R IMIVKPPGYQ GSPP+SPAG STPP+SPFSG
Sbjct: 61 TRVTRSIMIVKPPGYQNGSPPISPAG-STPPVSPFSG 92

[Close]

BLAST of Carg25026 vs. TrEMBL
Match: tr|A0A061F3N6|A0A061F3N6_THECC (Dormancy/auxin associated family protein isoform 3 OS=Theobroma cacao OX=3641 GN=TCM_026669 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.4e-25
Identity = 66/96 (68.75%), Postives = 78/96 (81.25%), Query Frame = 0


Query: 1  MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNG---KSYEEGTPPSSSEEP 60
          MGLLDQLWDDT+AGP PD+GLGKLRKH +FT R ++ KES+G   +SY + T    SEEP
Sbjct: 1  MGLLDQLWDDTVAGPRPDNGLGKLRKHSTFTFRPSSAKESDGGSVRSYGDET----SEEP 60

Query: 61 LKVSRRIMIVKPPGYQYGSPPVSPAGSSTPPLSPFS 94
           +V+R IMIVKPPGYQ GSPP+SPAG STPP+SPFS
Sbjct: 61 TRVTRSIMIVKPPGYQNGSPPISPAG-STPPVSPFS 91

[Close]

BLAST of Carg25026 vs. TrEMBL
Match: tr|B9RFD0|B9RFD0_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1433630 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.8e-25
Identity = 66/94 (70.21%), Postives = 76/94 (80.85%), Query Frame = 0


Query: 1  MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNGKSYEEGTPPSSSEEPLKV 60
          MGLLDQLWDDT+AGP PD+GLGKLRKH +F  RST  KES+G++        +SEE  KV
Sbjct: 1  MGLLDQLWDDTVAGPPPDNGLGKLRKHSTFNFRSTTGKESDGQN-GRSLGDDASEEVTKV 60

Query: 61 SRRIMIVKPPGYQYGSPPVSPAGSSTPPLSPFSG 95
          +R IMIVKPPGYQ+GSPPVSPAG STPP+SPFSG
Sbjct: 61 TRSIMIVKPPGYQFGSPPVSPAG-STPPVSPFSG 92

[Close]

BLAST of Carg25026 vs. TrEMBL
Match: tr|A0A061F4A5|A0A061F4A5_THECC (Dormancy/auxin associated family protein isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_026669 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 5.2e-25
Identity = 65/96 (67.71%), Postives = 76/96 (79.17%), Query Frame = 0


Query: 1  MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNG--KSYEEGTPPSSSEEPL 60
          MGLLDQLWDDT+AGP PD+GLGKLRKH +FT R ++ K   G  +SY + T    SEEP 
Sbjct: 1  MGLLDQLWDDTVAGPRPDNGLGKLRKHSTFTFRPSSAKADGGSVRSYGDET----SEEPT 60

Query: 61 KVSRRIMIVKPPGYQYGSPPVSPAGSSTPPLSPFSG 95
          +V+R IMIVKPPGYQ GSPP+SPAG STPP+SPFSG
Sbjct: 61 RVTRSIMIVKPPGYQNGSPPISPAG-STPPVSPFSG 91

The following BLAST results are available for this feature:

BLAST of Carg25026 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925438.1	3.1e-45	100.00	dormancy-associated protein homolog 3-like isoform X1 [Cucurbita moschata]	[more]
XP_022925449.1	5.3e-45	98.95	dormancy-associated protein homolog 3-like isoform X2 [Cucurbita moschata]	[more]
XP_022970123.1	2.0e-44	97.87	dormancy-associated protein homolog 3-like isoform X1 [Cucurbita maxima]	[more]
XP_023530291.1	2.0e-44	98.94	dormancy-associated protein homolog 3-like isoform X1 [Cucurbita pepo subsp. pep...	[more]
XP_022970131.1	3.4e-44	96.84	dormancy-associated protein homolog 3-like isoform X2 [Cucurbita maxima]	[more]

BLAST of Carg25026 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G56220.3	1.3e-21	57.89	Dormancy/auxin associated family protein	[more]
AT1G54070.1	2.8e-08	39.80	Dormancy/auxin associated family protein	[more]
AT1G28330.5	5.0e-05	69.23	dormancy-associated protein-like 1	[more]

BLAST of Carg25026 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8LD26\|DRMH3_ARATH	4.7e-21	58.33	Dormancy-associated protein homolog 3 OS=Arabidopsis thaliana OX=3702 GN=At1g562...	[more]
sp\|F4HV65\|DRMH4_ARATH	5.1e-07	39.80	Dormancy-associated protein homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g540...	[more]
sp\|Q05349\|12KD_FRAAN	9.0e-04	67.86	Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa OX=3747 PE=2 SV=1	[more]
sp\|B9DGG8\|DRM1_ARATH	9.0e-04	69.23	Dormancy-associated protein 1 OS=Arabidopsis thaliana OX=3702 GN=DRM1 PE=1 SV=1	[more]

BLAST of Carg25026 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A061FAK4\|A0A061FAK4_THECC	7.3e-27	69.39	Dormancy/auxin associated family protein isoform 4 OS=Theobroma cacao OX=3641 GN...	[more]
tr\|A0A061F398\|A0A061F398_THECC	3.6e-26	69.07	Drm3-like protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_026669 PE=4 SV=1	[more]
tr\|A0A061F3N6\|A0A061F3N6_THECC	1.4e-25	68.75	Dormancy/auxin associated family protein isoform 3 OS=Theobroma cacao OX=3641 GN...	[more]
tr\|B9RFD0\|B9RFD0_RICCO	1.8e-25	70.21	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1433630 PE=4 SV=1	[more]
tr\|A0A061F4A5\|A0A061F4A5_THECC	5.2e-25	67.71	Dormancy/auxin associated family protein isoform 2 OS=Theobroma cacao OX=3641 GN...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008406	DRM/ARP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25026-RA	Carg25026-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008406	Dormancy/auxin associated protein	PFAM	PF05564	Auxin_repressed	coord: 7..82 e-value: 3.3E-8 score: 34.1
IPR008406	Dormancy/auxin associated protein	PANTHER	PTHR33565	FAMILY NOT NAMED	coord: 1..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..96
None	No IPR available	PANTHER	PTHR33565:SF8	SUBFAMILY NOT NAMED	coord: 1..94

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25026	Cla005219	Watermelon (97103) v1	carwmB0236
Carg25026	Csa1G569400	Cucumber (Chinese Long) v2	carcuB0273
Carg25026	MELO3C015306	Melon (DHL92) v3.5.1	carmeB0249
Carg25026	ClCG03G017140	Watermelon (Charleston Gray)	carwcgB0239
Carg25026	CSPI01G26460	Wild cucumber (PI 183967)	carcpiB0277
Carg25026	Cucsa.181910	Cucumber (Gy14) v1	carcgyB0290
Carg25026	CmaCh11G011390	Cucurbita maxima (Rimu)	carcmaB0342
Carg25026	CmoCh11G011820	Cucurbita moschata (Rifu)	carcmoB0346
Carg25026	Lsi06G001120	Bottle gourd (USVL1VR-Ls)	carlsiB221
Carg25026	Cp4.1LG04g00480	Cucurbita pepo (Zucchini)	carcpeB0347
Carg25026	CsGy1G025710	Cucumber (Gy14) v2	carcgybB0260
Carg25026	MELO3C015306.2	Melon (DHL92) v3.6.1	carmedB0258
Carg25026	CsaV3_1G038820	Cucumber (Chinese Long) v3	carcucB0276
Carg25026	Cla97C03G067480	Watermelon (97103) v2	carwmbB0253
Carg25026	Bhi02G001759	Wax gourd	carwgoB0315

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25026	Cucurbita maxima (Rimu)	carcmaB0341
Carg25026	Cucurbita moschata (Rifu)	carcmoB0345
Carg25026	Cucurbita pepo (Zucchini)	carcpeB0346
Carg25026	Wax gourd	carwgoB0314