Cp4.1LG04g00480 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG04g00480
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Dormancy/auxin associated family protein
Location	Cp4.1LG04 : 1593623 .. 1595063 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCCTCGTCGATCTTATCCACAATACGTGCCGATTCAATGGACTTGCCACGTCACCATTTCCCTCCTGGATCGAATCCAACGGTTTAGATCTTTCAACAAACATGTTCGACATTTAACGCCCTCCTCCTCCTTTTAACTCACTCCACCGCTCCCCTATCGCCTCACTCTCTCTCTGACCCTTTTCTGATCGGAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCCGCCATGGGGCTACTGGACCAGCTGTGGGACGACACGCTTGCCGGACCGATGCCGGACTCCGGTCTGGGAAAGCTCCGCAAGCACCCATCCTTCACTTCCCGGTCCACCGCCGTCAAGGGTACGCCGCCACGGACCATAATTTAAAACCACAAATTTCATTACAAATTTCGCTTTATAAAAATTTGAACTTTAATTTAATTAACTTCAAAAGAATTTAATTAACTCAAATTTGGCTTTAATGGTGTTGGGCAGAATCCAATGGGAAGAGTTACGGGGAAGGAACGCCGCCGTCCTCGTCGGAGGAGCCACTTAAAGTTTCCAGACGAATTATGATCGTAAAGCCGCCGGGTTATCAGTACGGTTCGCCGCCGGTTTCGCCGGCCGGCTCCTCCACGCCGCCACTTTCTCCTTTTTCCGGTAATTTCTAGAGCCTTCTTTCTGTTAAAGCTGAAAACTATAATTACATTATCGGCGGAGGGAGGCGGAGTTATCCACAAAGTGAGGAGATCTGGACCGGTTTTTTGTCGTTTTGTGGAGTTGTCACTTTATCCGTGGACAATACATTCCGAGTAGTAATAATTAAGTGTGGGATGTGAAATGACTATAATACCCTCCATGCATGACTTAGTCTTCCTATGCCTATTCTATTACTTATCCAATAAGTTCATAATTTTTGTTTTACGTTTAATATCATTTGTTTAGAGTTTTTTTTTTTTTTTTTTTTTTTTTAATTTTTGTTGACAAATTTTATCAATATTATGGAGGTAGAGAATCATTCCGATTTCGAAGAAGATCGACGTCAGATGCTTACGAGAAGACGACAAGCGAAGTCGGACCTCGGACTCCTACTTCTCCTTATGACATGCGAGATATGATATGATATGATATGATATGAACTCGTGATCTTCTTCAGCTTGATGGGTCGATGATGGATGATGACTATGATGTAATATGAGTCTTTAAATAGTGTTAGCTTTTTGTTGAGAAATGTCGAAAACGGAGTCGTGAGCTTATGTGTGTAATAGTTCTAATTACGTGTTTGGGTTTGTTATGAAGTGTGTGTGTGGGCATGTTGTTGTGTATATGAATGAGTGATGGGAAGACAATATCTTTTTAAGAATAATTTTAATTTGATGTGATTTATTTTAATTCTAGAATTAAATGAAGCATTATTTTAGGGTTTTAATTTTAATTTAAGAGAGTGTATAGAGATAGG

mRNA sequence

TCTCCTCGTCGATCTTATCCACAATACGTGCCGATTCAATGGACTTGCCACGTCACCATTTCCCTCCTGGATCGAATCCAACGGTTTAGATCTTTCAACAAACATGTTCGACATTTAACGCCCTCCTCCTCCTTTTAACTCACTCCACCGCTCCCCTATCGCCTCACTCTCTCTCTGACCCTTTTCTGATCGGAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCCGCCATGGGGCTACTGGACCAGCTGTGGGACGACACGCTTGCCGGACCGATGCCGGACTCCGGTCTGGGAAAGCTCCGCAAGCACCCATCCTTCACTTCCCGGTCCACCGCCGTCAAGGAATCCAATGGGAAGAGTTACGGGGAAGGAACGCCGCCGTCCTCGTCGGAGGAGCCACTTAAAGTTTCCAGACGAATTATGATCGTAAAGCCGCCGGGTTATCAGTACGGTTCGCCGCCGGTTTCGCCGGCCGGCTCCTCCACGCCGCCACTTTCTCCTTTTTCCGGTAGAGAATCATTCCGATTTCGAAGAAGATCGACGTCAGATGCTTACGAGAAGACGACAAGCGAAGTCGGACCTCGGACTCCTACTTCTCCTTATGACATGCGAGATATGATATGATATGATATGATATGAACTCGTGATCTTCTTCAGCTTGATGGGTCGATGATGGATGATGACTATGATGTAATATGAGTCTTTAAATAGTGTTAGCTTTTTGTTGAGAAATGTCGAAAACGGAGTCGTGAGCTTATGTGTGTAATAGTTCTAATTACGTGTTTGGGTTTGTTATGAAGTGTGTGTGTGGGCATGTTGTTGTGTATATGAATGAGTGATGGGAAGACAATATCTTTTTAAGAATAATTTTAATTTGATGTGATTTATTTTAATTCTAGAATTAAATGAAGCATTATTTTAGGGTTTTAATTTTAATTTAAGAGAGTGTATAGAGATAGG

Coding sequence (CDS)

ATGGGGCTACTGGACCAGCTGTGGGACGACACGCTTGCCGGACCGATGCCGGACTCCGGTCTGGGAAAGCTCCGCAAGCACCCATCCTTCACTTCCCGGTCCACCGCCGTCAAGGAATCCAATGGGAAGAGTTACGGGGAAGGAACGCCGCCGTCCTCGTCGGAGGAGCCACTTAAAGTTTCCAGACGAATTATGATCGTAAAGCCGCCGGGTTATCAGTACGGTTCGCCGCCGGTTTCGCCGGCCGGCTCCTCCACGCCGCCACTTTCTCCTTTTTCCGGTAGAGAATCATTCCGATTTCGAAGAAGATCGACGTCAGATGCTTACGAGAAGACGACAAGCGAAGTCGGACCTCGGACTCCTACTTCTCCTTATGACATGCGAGATATGATATGA

Protein sequence

MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNGKSYGEGTPPSSSEEPLKVSRRIMIVKPPGYQYGSPPVSPAGSSTPPLSPFSGRESFRFRRRSTSDAYEKTTSEVGPRTPTSPYDMRDMI

Homology

[Close]

BLAST of Cp4.1LG04g00480 vs. Swiss-Prot
Match: DRMH3_ARATH (Dormancy-associated protein homolog 3 OS=Arabidopsis thaliana GN=At1g56220 PE=1 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.8e-31
Identity = 80/141 (56.74%), Postives = 97/141 (68.79%), Query Frame = 1


Query: 1   MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKE----SNGKSYGEGTPPSSSEE 60
           MGLLD LWDDT+AGP P++GLGKLRKH +F+ R ++  +     + +SYGE + P   EE
Sbjct: 1   MGLLDHLWDDTVAGPRPENGLGKLRKHHTFSFRPSSGNDQSEAGSARSYGEDSLP---EE 60

Query: 61  PLKVSRRIMIVKPPGYQYGSPPVSPAGSSTPPLSPFS--------GRESFRFRRRSTSDA 120
            +KV+R IMI+KPPGYQ  S P SPAG STPPLSPFS        G+E FRFRRRSTSDA
Sbjct: 61  AVKVTRSIMIIKPPGYQGSSAPASPAG-STPPLSPFSPPLSPFSGGKEPFRFRRRSTSDA 120

Query: 121 YEKTT--SEVGPRTPTSPYDM 128
           +EK    SE GPR+    Y M
Sbjct: 121 FEKAAGGSETGPRSSPPTYGM 137

[Close]

BLAST of Cp4.1LG04g00480 vs. Swiss-Prot
Match: DRMH4_ARATH (Dormancy-associated protein homolog 4 OS=Arabidopsis thaliana GN=At1g54070 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.1e-07
Identity = 40/98 (40.82%), Postives = 54/98 (55.10%), Query Frame = 1


Query: 1  MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNGKSYGEGTPPSSSEEPLKV 60
          MG L +LWD+T+AGP PD+GLGKLRKH S ++    V+ S         PPS S +  +V
Sbjct: 1  MGFLHKLWDETVAGPTPDNGLGKLRKHDSLST----VRSS---------PPSLSSD--QV 60

Query: 61 SRRIMIVKPPGYQYG-----SPPVSPAGSSTPPLSPFS 94
          +R IM+ K      G       P SP  SS+ P +P +
Sbjct: 61 TRSIMVTKGNNNVRGLRKLKMDPDSPTCSSSNPGTPLT 83

[Close]

BLAST of Cp4.1LG04g00480 vs. TrEMBL
Match: A0A0A0LWE4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569400 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 5.9e-50
Identity = 111/131 (84.73%), Postives = 114/131 (87.02%), Query Frame = 1


Query: 1   MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKES-NGKSYGEGT--PPSSSEEP 60
           MGLLDQLWDDTLAGP PDSGLGKLRKHPS TSRS AVKES NGK Y EG     SSSE+ 
Sbjct: 1   MGLLDQLWDDTLAGPTPDSGLGKLRKHPSLTSRSAAVKESSNGKRYEEGVVMSSSSSEDS 60

Query: 61  LKVSRRIMIVKPPG-YQYGSPPVSPAGSSTPPLSPFSGRESFRFRRRSTSDAYEKTTSEV 120
           +KVSRRIMIVKPPG YQYGSPPVSPA SSTPP SPFSGRESFRFRRRSTSDAY KTTSEV
Sbjct: 61  VKVSRRIMIVKPPGGYQYGSPPVSPAASSTPPSSPFSGRESFRFRRRSTSDAYGKTTSEV 120

Query: 121 GPRTPTSPYDM 128
           G RTPTSP+DM
Sbjct: 121 GARTPTSPFDM 131

[Close]

BLAST of Cp4.1LG04g00480 vs. TrEMBL
Match: A0A061F398_THECC (Drm3-like protein isoform 1 OS=Theobroma cacao GN=TCM_026669 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.9e-40
Identity = 94/131 (71.76%), Postives = 109/131 (83.21%), Query Frame = 1


Query: 1   MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNG---KSYGEGTPPSSSEEP 60
           MGLLDQLWDDT+AGP PD+GLGKLRKH +FT R ++ KES+G   +SYG+ T    SEEP
Sbjct: 1   MGLLDQLWDDTVAGPRPDNGLGKLRKHSTFTFRPSSAKESDGGSVRSYGDET----SEEP 60

Query: 61  LKVSRRIMIVKPPGYQYGSPPVSPAGSSTPPLSPFSG-RESFRFRRRSTSDAYEKTTSEV 120
            +V+R IMIVKPPGYQ GSPP+SPAGS TPP+SPFSG RESFRFRR+STSDAYEK  SEV
Sbjct: 61  TRVTRSIMIVKPPGYQNGSPPISPAGS-TPPVSPFSGGRESFRFRRKSTSDAYEK-ASEV 120

Query: 121 GPRTPTSPYDM 128
           GPR+P  PYD+
Sbjct: 121 GPRSPHPPYDV 125

[Close]

BLAST of Cp4.1LG04g00480 vs. TrEMBL
Match: B9RFD0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1433630 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.5e-40
Identity = 94/128 (73.44%), Postives = 106/128 (82.81%), Query Frame = 1


Query: 1   MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNGKSYGEGTPPSSSEEPLKV 60
           MGLLDQLWDDT+AGP PD+GLGKLRKH +F  RST  KES+G++ G      +SEE  KV
Sbjct: 1   MGLLDQLWDDTVAGPPPDNGLGKLRKHSTFNFRSTTGKESDGQN-GRSLGDDASEEVTKV 60

Query: 61  SRRIMIVKPPGYQYGSPPVSPAGSSTPPLSPFSG-RESFRFRRRSTSDAYEKTTSEVGPR 120
           +R IMIVKPPGYQ+GSPPVSPAGS TPP+SPFSG RESFRFRRRSTSDAYEK  SEVGPR
Sbjct: 61  TRSIMIVKPPGYQFGSPPVSPAGS-TPPVSPFSGGRESFRFRRRSTSDAYEK-ASEVGPR 120

Query: 121 TPTSPYDM 128
           +P  PYD+
Sbjct: 121 SPAPPYDV 125

[Close]

BLAST of Cp4.1LG04g00480 vs. TrEMBL
Match: A0A061F4A5_THECC (Dormancy/auxin associated family protein isoform 2 OS=Theobroma cacao GN=TCM_026669 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.8e-39
Identity = 92/130 (70.77%), Postives = 106/130 (81.54%), Query Frame = 1


Query: 1   MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNG--KSYGEGTPPSSSEEPL 60
           MGLLDQLWDDT+AGP PD+GLGKLRKH +FT R ++ K   G  +SYG+ T    SEEP 
Sbjct: 1   MGLLDQLWDDTVAGPRPDNGLGKLRKHSTFTFRPSSAKADGGSVRSYGDET----SEEPT 60

Query: 61  KVSRRIMIVKPPGYQYGSPPVSPAGSSTPPLSPFSG-RESFRFRRRSTSDAYEKTTSEVG 120
           +V+R IMIVKPPGYQ GSPP+SPAGS TPP+SPFSG RESFRFRR+STSDAYEK  SEVG
Sbjct: 61  RVTRSIMIVKPPGYQNGSPPISPAGS-TPPVSPFSGGRESFRFRRKSTSDAYEK-ASEVG 120

Query: 121 PRTPTSPYDM 128
           PR+P  PYD+
Sbjct: 121 PRSPHPPYDV 124

[Close]

BLAST of Cp4.1LG04g00480 vs. TrEMBL
Match: A0A0D2R1W3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G300900 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 6.2e-39
Identity = 92/131 (70.23%), Postives = 106/131 (80.92%), Query Frame = 1


Query: 1   MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNG---KSYGEGTPPSSSEEP 60
           MGLLDQLWDDT+AGP PD+GLGKLRKH +FT R  + KES+G   +SYG+  P    EE 
Sbjct: 1   MGLLDQLWDDTVAGPRPDNGLGKLRKHSTFTFRPNSAKESDGGSLRSYGDEAP----EEA 60

Query: 61  LKVSRRIMIVKPPGYQYGSPPVSPAGSSTPPLSPFS-GRESFRFRRRSTSDAYEKTTSEV 120
            +V+R IMIVKPPGYQ GSPPVSPAG STPP+SPFS GRES+RFRRRSTSDAYEK  +EV
Sbjct: 61  TRVTRSIMIVKPPGYQSGSPPVSPAG-STPPVSPFSGGRESYRFRRRSTSDAYEK-ANEV 120

Query: 121 GPRTPTSPYDM 128
           GPR+P  PYD+
Sbjct: 121 GPRSPCPPYDV 125

[Close]

BLAST of Cp4.1LG04g00480 vs. TAIR10
Match: AT1G56220.3 (AT1G56220.3 Dormancy/auxin associated family protein)

HSP 1 Score: 135.6 bits (340), Expect = 2.2e-32
Identity = 80/144 (55.56%), Postives = 97/144 (67.36%), Query Frame = 1


Query: 1   MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKE----SNGKSYGEGTPPSSSEE 60
           MGLLD LWDDT+AGP P++GLGKLRKH +F+ R ++  +     + +SYGE + P   EE
Sbjct: 1   MGLLDHLWDDTVAGPRPENGLGKLRKHHTFSFRPSSGNDQSEAGSARSYGEDSLP---EE 60

Query: 61  PLKVSRRIMIVKPPGYQYGSPPVSPAGSSTPPLSPFS-----------GRESFRFRRRST 120
            +KV+R IMI+KPPGYQ  S P SPAG STPPLSPFS           G+E FRFRRRST
Sbjct: 61  AVKVTRSIMIIKPPGYQGSSAPASPAG-STPPLSPFSPPLSPFSANAGGKEPFRFRRRST 120

Query: 121 SDAYEKTT--SEVGPRTPTSPYDM 128
           SDA+EK    SE GPR+    Y M
Sbjct: 121 SDAFEKAAGGSETGPRSSPPTYGM 140

[Close]

BLAST of Cp4.1LG04g00480 vs. TAIR10
Match: AT1G54070.1 (AT1G54070.1 Dormancy/auxin associated family protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.7e-08
Identity = 40/98 (40.82%), Postives = 54/98 (55.10%), Query Frame = 1


Query: 1  MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNGKSYGEGTPPSSSEEPLKV 60
          MG L +LWD+T+AGP PD+GLGKLRKH S ++    V+ S         PPS S +  +V
Sbjct: 1  MGFLHKLWDETVAGPTPDNGLGKLRKHDSLST----VRSS---------PPSLSSD--QV 60

Query: 61 SRRIMIVKPPGYQYG-----SPPVSPAGSSTPPLSPFS 94
          +R IM+ K      G       P SP  SS+ P +P +
Sbjct: 61 TRSIMVTKGNNNVRGLRKLKMDPDSPTCSSSNPGTPLT 83

[Close]

BLAST of Cp4.1LG04g00480 vs. NCBI nr
Match: gi|449435651|ref|XP_004135608.1| (PREDICTED: uncharacterized protein LOC101205077 isoform X1 [Cucumis sativus])

HSP 1 Score: 204.9 bits (520), Expect = 8.5e-50
Identity = 111/131 (84.73%), Postives = 114/131 (87.02%), Query Frame = 1


Query: 1   MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKES-NGKSYGEGT--PPSSSEEP 60
           MGLLDQLWDDTLAGP PDSGLGKLRKHPS TSRS AVKES NGK Y EG     SSSE+ 
Sbjct: 1   MGLLDQLWDDTLAGPTPDSGLGKLRKHPSLTSRSAAVKESSNGKRYEEGVVMSSSSSEDS 60

Query: 61  LKVSRRIMIVKPPG-YQYGSPPVSPAGSSTPPLSPFSGRESFRFRRRSTSDAYEKTTSEV 120
           +KVSRRIMIVKPPG YQYGSPPVSPA SSTPP SPFSGRESFRFRRRSTSDAY KTTSEV
Sbjct: 61  VKVSRRIMIVKPPGGYQYGSPPVSPAASSTPPSSPFSGRESFRFRRRSTSDAYGKTTSEV 120

Query: 121 GPRTPTSPYDM 128
           G RTPTSP+DM
Sbjct: 121 GARTPTSPFDM 131

[Close]

BLAST of Cp4.1LG04g00480 vs. NCBI nr
Match: gi|659099501|ref|XP_008450631.1| (PREDICTED: uncharacterized protein LOC103492161 [Cucumis melo])

HSP 1 Score: 197.2 bits (500), Expect = 1.8e-47
Identity = 111/137 (81.02%), Postives = 114/137 (83.21%), Query Frame = 1


Query: 1   MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESN-GKSYGEGTPPSSS----- 60
           MGLLDQLWDDTLAGP PDSGLGKLRKHPSFTSRS A KESN GK Y EG   SSS     
Sbjct: 1   MGLLDQLWDDTLAGPTPDSGLGKLRKHPSFTSRSAAAKESNNGKRYEEGIMLSSSSSAAA 60

Query: 61  --EEPLKVSRRIMIVKPPG-YQYGS-PPVSPAGSSTPPLSPFSGRESFRFRRRSTSDAYE 120
             E+ +KVSRRIMIVKPPG YQYGS PPVSPA SSTPP SPFSGRESFRFRRRSTSDAY 
Sbjct: 61  AAEDGVKVSRRIMIVKPPGGYQYGSSPPVSPAASSTPPSSPFSGRESFRFRRRSTSDAYG 120

Query: 121 KTTSEVGPRTPTSPYDM 128
           KTTSEVG RTPTSP+DM
Sbjct: 121 KTTSEVGARTPTSPFDM 137

[Close]

BLAST of Cp4.1LG04g00480 vs. NCBI nr
Match: gi|1000981107|ref|XP_015570609.1| (PREDICTED: uncharacterized protein LOC8287105 isoform X3 [Ricinus communis])

HSP 1 Score: 177.6 bits (449), Expect = 1.5e-41
Identity = 94/127 (74.02%), Postives = 106/127 (83.46%), Query Frame = 1


Query: 1   MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNGKSYGEGTPPSSSEEPLKV 60
           MGLLDQLWDDT+AGP PD+GLGKLRKH +F  RST  KES+G++ G      +SEE  KV
Sbjct: 1   MGLLDQLWDDTVAGPPPDNGLGKLRKHSTFNFRSTTGKESDGQN-GRSLGDDASEEVTKV 60

Query: 61  SRRIMIVKPPGYQYGSPPVSPAGSSTPPLSPFSGRESFRFRRRSTSDAYEKTTSEVGPRT 120
           +R IMIVKPPGYQ+GSPPVSPAG STPP+SPFSGRESFRFRRRSTSDAYEK  SEVGPR+
Sbjct: 61  TRSIMIVKPPGYQFGSPPVSPAG-STPPVSPFSGRESFRFRRRSTSDAYEK-ASEVGPRS 120

Query: 121 PTSPYDM 128
           P  PYD+
Sbjct: 121 PAPPYDV 124

[Close]

BLAST of Cp4.1LG04g00480 vs. NCBI nr
Match: gi|590644206|ref|XP_007031019.1| (Drm3-like protein isoform 1 [Theobroma cacao])

HSP 1 Score: 173.3 bits (438), Expect = 2.7e-40
Identity = 94/131 (71.76%), Postives = 109/131 (83.21%), Query Frame = 1


Query: 1   MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNG---KSYGEGTPPSSSEEP 60
           MGLLDQLWDDT+AGP PD+GLGKLRKH +FT R ++ KES+G   +SYG+ T    SEEP
Sbjct: 1   MGLLDQLWDDTVAGPRPDNGLGKLRKHSTFTFRPSSAKESDGGSVRSYGDET----SEEP 60

Query: 61  LKVSRRIMIVKPPGYQYGSPPVSPAGSSTPPLSPFSG-RESFRFRRRSTSDAYEKTTSEV 120
            +V+R IMIVKPPGYQ GSPP+SPAGS TPP+SPFSG RESFRFRR+STSDAYEK  SEV
Sbjct: 61  TRVTRSIMIVKPPGYQNGSPPISPAGS-TPPVSPFSGGRESFRFRRKSTSDAYEK-ASEV 120

Query: 121 GPRTPTSPYDM 128
           GPR+P  PYD+
Sbjct: 121 GPRSPHPPYDV 125

[Close]

BLAST of Cp4.1LG04g00480 vs. NCBI nr
Match: gi|1000981103|ref|XP_015570607.1| (PREDICTED: uncharacterized protein LOC8287105 isoform X1 [Ricinus communis])

HSP 1 Score: 172.9 bits (437), Expect = 3.6e-40
Identity = 94/128 (73.44%), Postives = 106/128 (82.81%), Query Frame = 1


Query: 1   MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNGKSYGEGTPPSSSEEPLKV 60
           MGLLDQLWDDT+AGP PD+GLGKLRKH +F  RST  KES+G++ G      +SEE  KV
Sbjct: 1   MGLLDQLWDDTVAGPPPDNGLGKLRKHSTFNFRSTTGKESDGQN-GRSLGDDASEEVTKV 60

Query: 61  SRRIMIVKPPGYQYGSPPVSPAGSSTPPLSPFSG-RESFRFRRRSTSDAYEKTTSEVGPR 120
           +R IMIVKPPGYQ+GSPPVSPAGS TPP+SPFSG RESFRFRRRSTSDAYEK  SEVGPR
Sbjct: 61  TRSIMIVKPPGYQFGSPPVSPAGS-TPPVSPFSGGRESFRFRRRSTSDAYEK-ASEVGPR 120

Query: 121 TPTSPYDM 128
           +P  PYD+
Sbjct: 121 SPAPPYDV 125

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g00480 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DRMH3_ARATH	1.8e-31	56.74	Dormancy-associated protein homolog 3 OS=Arabidopsis thaliana GN=At1g56220 PE=1 ...	[more]
DRMH4_ARATH	3.1e-07	40.82	Dormancy-associated protein homolog 4 OS=Arabidopsis thaliana GN=At1g54070 PE=3 ...	[more]

BLAST of Cp4.1LG04g00480 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWE4_CUCSA	5.9e-50	84.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569400 PE=4 SV=1	[more]
A0A061F398_THECC	1.9e-40	71.76	Drm3-like protein isoform 1 OS=Theobroma cacao GN=TCM_026669 PE=4 SV=1	[more]
B9RFD0_RICCO	2.5e-40	73.44	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1433630 PE=4 SV=1	[more]
A0A061F4A5_THECC	2.8e-39	70.77	Dormancy/auxin associated family protein isoform 2 OS=Theobroma cacao GN=TCM_026...	[more]
A0A0D2R1W3_GOSRA	6.2e-39	70.23	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G300900 PE=4 SV=1	[more]

BLAST of Cp4.1LG04g00480 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G56220.3	2.2e-32	55.56	Dormancy/auxin associated family protein	[more]
AT1G54070.1	1.7e-08	40.82	Dormancy/auxin associated family protein	[more]

BLAST of Cp4.1LG04g00480 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449435651\|ref\|XP_004135608.1\|	8.5e-50	84.73	PREDICTED: uncharacterized protein LOC101205077 isoform X1 [Cucumis sativus]	[more]
gi\|659099501\|ref\|XP_008450631.1\|	1.8e-47	81.02	PREDICTED: uncharacterized protein LOC103492161 [Cucumis melo]	[more]
gi\|1000981107\|ref\|XP_015570609.1\|	1.5e-41	74.02	PREDICTED: uncharacterized protein LOC8287105 isoform X3 [Ricinus communis]	[more]
gi\|590644206\|ref\|XP_007031019.1\|	2.7e-40	71.76	Drm3-like protein isoform 1 [Theobroma cacao]	[more]
gi\|1000981103\|ref\|XP_015570607.1\|	3.6e-40	73.44	PREDICTED: uncharacterized protein LOC8287105 isoform X1 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008406	DRM/ARP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g00480.1	Cp4.1LG04g00480.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008406	Dormancy/auxin associated protein	PFAM	PF05564	Auxin_repressed	coord: 7..83 score: 9.
None	No IPR available	PANTHER	PTHR33565	FAMILY NOT NAMED	coord: 2..131 score: 2.4
None	No IPR available	PANTHER	PTHR33565:SF1	DORMANCY/AUXIN ASSOCIATED PROTEIN	coord: 2..131 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG04g00480	Cucsa.181910	Cucumber (Gy14) v1	cgycpeB0500
Cp4.1LG04g00480	CmaCh11G011390	Cucurbita maxima (Rimu)	cmacpeB147
Cp4.1LG04g00480	CmoCh11G011820	Cucurbita moschata (Rifu)	cmocpeB127
Cp4.1LG04g00480	Cla005219	Watermelon (97103) v1	cpewmB643
Cp4.1LG04g00480	Csa1G569400	Cucumber (Chinese Long) v2	cpecuB656
Cp4.1LG04g00480	MELO3C015306	Melon (DHL92) v3.5.1	cpemeB622
Cp4.1LG04g00480	ClCG03G017140	Watermelon (Charleston Gray)	cpewcgB600
Cp4.1LG04g00480	CSPI01G26460	Wild cucumber (PI 183967)	cpecpiB659
Cp4.1LG04g00480	Lsi06G001120	Bottle gourd (USVL1VR-Ls)	cpelsiB564
Cp4.1LG04g00480	MELO3C015306.2	Melon (DHL92) v3.6.1	cpemedB735
Cp4.1LG04g00480	CsaV3_1G038820	Cucumber (Chinese Long) v3	cpecucB0817
Cp4.1LG04g00480	Bhi02G001759	Wax gourd	cpewgoB0887
Cp4.1LG04g00480	CsGy1G025710	Cucumber (Gy14) v2	cgybcpeB129
Cp4.1LG04g00480	Carg25026	Silver-seed gourd	carcpeB0347

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG04g00480	Wax gourd	cpewgoB0904
Cp4.1LG04g00480	Cucurbita pepo (Zucchini)	cpecpeB366
Cp4.1LG04g00480	Cucurbita maxima (Rimu)	cmacpeB089
Cp4.1LG04g00480	Cucurbita moschata (Rifu)	cmocpeB065