Carg25013 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25013
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	tRNA (Guanosine(18)-2'-O)-methyltransferase
Location	Cucurbita_argyrosperma_scaffold_176 : 80516 .. 81360 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CACTGCATTTGTGGATGAGGAGGAGGGTGTCTATCTTTTCTTCTACCGCTGTCTGAACCGTCGAAGCTCTTCAACGCGCAGCCATGGCGTCCTGCAGAATCGCAGTCCGACCTTCACTATTTCTACTTGGAAGCTGCAGTCCCCGTACAACTCAACGAATTCTCCCTTCTGTTTCCTTCTCCTCACCACCGCTTTCTTCCTACTCTCCATTCTTCACCGCCGTCTCAAACCATTGTACTCTTCTCTCACTCCCTCTCTTTCTCGCTCTCGGAGGCCATACAATATCTTTTGCATTTCTTTCTTAAAGCTGTTCTTGACTTTCCTTCTGTTTTGATTGCTTTACAGCCTCAAGAAACAACCCTAAGGCAGTTTCTACAAGATGTTTTTCCTCGACTTCGGCCGCTGCATCAGTAGAAGTAACAGACTCTGTAGGAAGTGACCTAGAACCGCCGGAGATTCATACACAAGACACGGTGGAGCACCTTCTCACACACTCCGATGACGTTGCCAGGTTGATGAAGATGGAGCGGAGGCCGATTAATTTAGATGGAGATGAATATCCGCGTCAAGGGCGATGGTTTCCGTACCTGGATAAGTTTAGCTGTGAAAGTTCTTGGTTGAATAGTGGTGAGGTTTTGGACGCCTTGGATCCTCTCATATTGGACTCGAGGAAAGAGCGGTTCAAGAACGTCGTGCGACACAGGAGCTATTCGGTTTGTTTGGTGGTAGAAGGTTTGAGTGATTTCGGTAACGTCTCGGCGGCGTTTCGATCTGCCGATGCACTTGGATTTCAGTCGGTTCATGTGGTCTCTTGCGACGCTTCCAAAAGGTGCAAGAATGATTGA

mRNA sequence

CACTGCATTTGTGGATGAGGAGGAGGGTGTCTATCTTTTCTTCTACCGCTGTCTGAACCGTCGAAGCTCTTCAACGCGCAGCCATGGCGTCCTGCAGAATCGCAGTCCGACCTTCACTATTTCTACTTGGAAGCTGCAGTCCCCGTACAACTCAACGAATTCTCCCTTCTGTTTCCTTCTCCTCACCACCGCTTTCTTCCTACTCTCCATTCTTCACCGCCGTCTCAAACCATTCCTCAAGAAACAACCCTAAGGCAGTTTCTACAAGATGTTTTTCCTCGACTTCGGCCGCTGCATCAGTAGAAGTAACAGACTCTGTAGGAAGTGACCTAGAACCGCCGGAGATTCATACACAAGACACGGTGGAGCACCTTCTCACACACTCCGATGACGTTGCCAGGTTGATGAAGATGGAGCGGAGGCCGATTAATTTAGATGGAGATGAATATCCGCGTCAAGGGCGATGGTTTCCGTACCTGGATAAGTTTAGCTGTGAAAGTTCTTGGTTGAATAGTGGTGAGGTTTTGGACGCCTTGGATCCTCTCATATTGGACTCGAGGAAAGAGCGGTTCAAGAACGTCGTGCGACACAGGAGCTATTCGGTTTGTTTGGTGGTAGAAGGTTTGAGTGATTTCGGTAACGTCTCGGCGGCGTTTCGATCTGCCGATGCACTTGGATTTCAGTCGGTTCATGTGGTCTCTTGCGACGCTTCCAAAAGGTGCAAGAATGATTGA

Coding sequence (CDS)

ATGGCGTCCTGCAGAATCGCAGTCCGACCTTCACTATTTCTACTTGGAAGCTGCAGTCCCCGTACAACTCAACGAATTCTCCCTTCTGTTTCCTTCTCCTCACCACCGCTTTCTTCCTACTCTCCATTCTTCACCGCCGTCTCAAACCATTCCTCAAGAAACAACCCTAAGGCAGTTTCTACAAGATGTTTTTCCTCGACTTCGGCCGCTGCATCAGTAGAAGTAACAGACTCTGTAGGAAGTGACCTAGAACCGCCGGAGATTCATACACAAGACACGGTGGAGCACCTTCTCACACACTCCGATGACGTTGCCAGGTTGATGAAGATGGAGCGGAGGCCGATTAATTTAGATGGAGATGAATATCCGCGTCAAGGGCGATGGTTTCCGTACCTGGATAAGTTTAGCTGTGAAAGTTCTTGGTTGAATAGTGGTGAGGTTTTGGACGCCTTGGATCCTCTCATATTGGACTCGAGGAAAGAGCGGTTCAAGAACGTCGTGCGACACAGGAGCTATTCGGTTTGTTTGGTGGTAGAAGGTTTGAGTGATTTCGGTAACGTCTCGGCGGCGTTTCGATCTGCCGATGCACTTGGATTTCAGTCGGTTCATGTGGTCTCTTGCGACGCTTCCAAAAGGTGCAAGAATGATTGA

Protein sequence

MASCRIAVRPSLFLLGSCSPRTTQRILPSVSFSSPPLSSYSPFFTAVSNHSSRNNPKAVSTRCFSSTSAAASVEVTDSVGSDLEPPEIHTQDTVEHLLTHSDDVARLMKMERRPINLDGDEYPRQGRWFPYLDKFSCESSWLNSGEVLDALDPLILDSRKERFKNVVRHRSYSVCLVVEGLSDFGNVSAAFRSADALGFQSVHVVSCDASKRCKND

Homology

[Close]

BLAST of Carg25013 vs. NCBI nr
Match: XP_022933839.1 (uncharacterized protein LOC111441136 [Cucurbita moschata])

HSP 1 Score: 414.1 bits (1063), Expect = 3.0e-112
Identity = 211/217 (97.24%), Postives = 213/217 (98.16%), Query Frame = 0


Query: 1   MASCRIAVRPSLFLLGSCSPRTTQRILPSVSFSSPPLSSYSPFFTAVSNHSSRNNPKAVS 60
           MASCRIAVRPSLFLLGSCSPRTTQRILPSVSFSSPPLSSYSPFFTAVSNHSSRNNPKAVS
Sbjct: 1   MASCRIAVRPSLFLLGSCSPRTTQRILPSVSFSSPPLSSYSPFFTAVSNHSSRNNPKAVS 60

Query: 61  TRCFSSTSAAA-SVEVTDSVGSDLEPPEIHTQDTVEHLLTHSDDVARLMKMERRPINLDG 120
            RCFSSTSAAA SVEVTDSVGSDLEPPEIHTQDTVEHLLTHSDDVARLMKMERRPINLDG
Sbjct: 61  IRCFSSTSAAASSVEVTDSVGSDLEPPEIHTQDTVEHLLTHSDDVARLMKMERRPINLDG 120

Query: 121 DEYPRQGRWFPYLDKFSCESSWLNSGEVLDALDPLILDSRKERFKNVVRHRSYSVCLVVE 180
           DEYPRQGRWFPYLDKFSCESSWLNSGEVLDALDPLILDSRKERFKNVVRHRSYSVCLVVE
Sbjct: 121 DEYPRQGRWFPYLDKFSCESSWLNSGEVLDALDPLILDSRKERFKNVVRHRSYSVCLVVE 180

Query: 181 GLSDFGNVSAAFRSADALGFQSVHVVSCDASKRCKND 217
           GLSDFGNVSAAFRSADALGFQSVHVVSCDASKR + +
Sbjct: 181 GLSDFGNVSAAFRSADALGFQSVHVVSCDASKRYREN 217

[Close]

BLAST of Carg25013 vs. NCBI nr
Match: XP_023530258.1 (uncharacterized protein LOC111792877 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 408.7 bits (1049), Expect = 1.2e-110
Identity = 209/217 (96.31%), Postives = 212/217 (97.70%), Query Frame = 0


Query: 1   MASCRIAVRPSLFLLGSCSPRTTQRILPSVSFSSPPLSSYSPFFTAVSNHSSRNNPKAVS 60
           MASCRIAVRPSLFLLGSCS RTTQRILPSVSFSSPPLSSYSPFFTAVSNHSSRNNPKAVS
Sbjct: 1   MASCRIAVRPSLFLLGSCSSRTTQRILPSVSFSSPPLSSYSPFFTAVSNHSSRNNPKAVS 60

Query: 61  TRCFSSTSAAA-SVEVTDSVGSDLEPPEIHTQDTVEHLLTHSDDVARLMKMERRPINLDG 120
           TRCFSSTSAAA SVEVTDSVGSDLEPPEIH QDTVE+LLTHSDDVARLMKMERRPINLDG
Sbjct: 61  TRCFSSTSAAASSVEVTDSVGSDLEPPEIHAQDTVENLLTHSDDVARLMKMERRPINLDG 120

Query: 121 DEYPRQGRWFPYLDKFSCESSWLNSGEVLDALDPLILDSRKERFKNVVRHRSYSVCLVVE 180
           DEYPRQGRWFPYLDKFSCESSWLNSGEVLDALDPLILDSRKERFKNVVRHRSYSVCLVVE
Sbjct: 121 DEYPRQGRWFPYLDKFSCESSWLNSGEVLDALDPLILDSRKERFKNVVRHRSYSVCLVVE 180

Query: 181 GLSDFGNVSAAFRSADALGFQSVHVVSCDASKRCKND 217
           GLSDFGNVSAAFRSADALGFQSVHVVSCDASKR + +
Sbjct: 181 GLSDFGNVSAAFRSADALGFQSVHVVSCDASKRYREN 217

[Close]

BLAST of Carg25013 vs. NCBI nr
Match: XP_022969711.1 (uncharacterized protein LOC111468788 [Cucurbita maxima])

HSP 1 Score: 399.1 bits (1024), Expect = 9.9e-108
Identity = 204/217 (94.01%), Postives = 208/217 (95.85%), Query Frame = 0


Query: 1   MASCRIAVRPSLFLLGSCSPRTTQRILPSVSFSSPPLSSYSPFFTAVSNHSSRNNPKAVS 60
           MASCRIAVRPSLFLLGSCS RTTQ ILPSVSF SPPLSSYSPFFTAVSNHSSRNNPKAV 
Sbjct: 1   MASCRIAVRPSLFLLGSCSSRTTQLILPSVSFPSPPLSSYSPFFTAVSNHSSRNNPKAVF 60

Query: 61  TRCFSSTSAAA-SVEVTDSVGSDLEPPEIHTQDTVEHLLTHSDDVARLMKMERRPINLDG 120
           TRCFSSTSAAA SVEVTD+VGSDLEPPEIHTQDTVEHLLTHSDDVARLMKMERRPINLDG
Sbjct: 61  TRCFSSTSAAASSVEVTDAVGSDLEPPEIHTQDTVEHLLTHSDDVARLMKMERRPINLDG 120

Query: 121 DEYPRQGRWFPYLDKFSCESSWLNSGEVLDALDPLILDSRKERFKNVVRHRSYSVCLVVE 180
            EYP QGRWFPYLDKFSCE+SWLNSGEVLDALDPLILDSRKERFKNVVRHRSYSVCLVVE
Sbjct: 121 AEYPHQGRWFPYLDKFSCENSWLNSGEVLDALDPLILDSRKERFKNVVRHRSYSVCLVVE 180

Query: 181 GLSDFGNVSAAFRSADALGFQSVHVVSCDASKRCKND 217
           GLSDFGNVSAAFRSADALGFQSVHVVSCDASKR + +
Sbjct: 181 GLSDFGNVSAAFRSADALGFQSVHVVSCDASKRYREN 217

[Close]

BLAST of Carg25013 vs. NCBI nr
Match: KGN59530.1 (hypothetical protein Csa_3G824750 [Cucumis sativus])

HSP 1 Score: 309.3 bits (791), Expect = 1.0e-80
Identity = 161/216 (74.54%), Postives = 179/216 (82.87%), Query Frame = 0


Query: 1   MASCRIAVRPSLFLLGSCSPRTTQRILPSVSFSSPPLSSYSPFFTAVSNHSSRNNPKAVS 60
           MASCRI  R SLFLL SCSPR TQRI  SV   S  L S+S FFT   N  SR+NP AVS
Sbjct: 1   MASCRIVSRSSLFLLQSCSPRRTQRIFSSVFLPSLHLPSFSLFFT---NRFSRSNPNAVS 60

Query: 61  TRCFSSTSAAASVEVTDSVGSDLEPPEIHTQDTVEHLLTHSDDVARLMKMERRPINLDGD 120
           TRCF+S SAA S    + + +D+EPPE+ TQDTVEHLLTHS+DVARLMKMERR + LDG 
Sbjct: 61  TRCFASISAATSPLEVEDIVADVEPPEVRTQDTVEHLLTHSNDVARLMKMERRSVELDGA 120

Query: 121 EYPRQGRWFPYLDKFSCESSWLNSGEVLDALDPLILDSRKERFKNVVRHRSYSVCLVVEG 180
           EYP +GRWFPYLDK+SC SSWLNSGE+L+ALD LILDSRKERFKNVVR+RSYSVCLVVEG
Sbjct: 121 EYPHKGRWFPYLDKYSCGSSWLNSGEILEALDSLILDSRKERFKNVVRNRSYSVCLVVEG 180

Query: 181 LSDFGNVSAAFRSADALGFQSVHVVSCDASKRCKND 217
           L+DFGNVSAAFRSADALGFQSVHVVSCDASKR + +
Sbjct: 181 LTDFGNVSAAFRSADALGFQSVHVVSCDASKRYREN 213

[Close]

BLAST of Carg25013 vs. NCBI nr
Match: XP_004136796.2 (PREDICTED: uncharacterized protein LOC101218911 isoform X1 [Cucumis sativus])

HSP 1 Score: 309.3 bits (791), Expect = 1.0e-80
Identity = 161/216 (74.54%), Postives = 179/216 (82.87%), Query Frame = 0


Query: 1   MASCRIAVRPSLFLLGSCSPRTTQRILPSVSFSSPPLSSYSPFFTAVSNHSSRNNPKAVS 60
           MASCRI  R SLFLL SCSPR TQRI  SV   S  L S+S FFT   N  SR+NP AVS
Sbjct: 44  MASCRIVSRSSLFLLQSCSPRRTQRIFSSVFLPSLHLPSFSLFFT---NRFSRSNPNAVS 103

Query: 61  TRCFSSTSAAASVEVTDSVGSDLEPPEIHTQDTVEHLLTHSDDVARLMKMERRPINLDGD 120
           TRCF+S SAA S    + + +D+EPPE+ TQDTVEHLLTHS+DVARLMKMERR + LDG 
Sbjct: 104 TRCFASISAATSPLEVEDIVADVEPPEVRTQDTVEHLLTHSNDVARLMKMERRSVELDGA 163

Query: 121 EYPRQGRWFPYLDKFSCESSWLNSGEVLDALDPLILDSRKERFKNVVRHRSYSVCLVVEG 180
           EYP +GRWFPYLDK+SC SSWLNSGE+L+ALD LILDSRKERFKNVVR+RSYSVCLVVEG
Sbjct: 164 EYPHKGRWFPYLDKYSCGSSWLNSGEILEALDSLILDSRKERFKNVVRNRSYSVCLVVEG 223

Query: 181 LSDFGNVSAAFRSADALGFQSVHVVSCDASKRCKND 217
           L+DFGNVSAAFRSADALGFQSVHVVSCDASKR + +
Sbjct: 224 LTDFGNVSAAFRSADALGFQSVHVVSCDASKRYREN 256

[Close]

BLAST of Carg25013 vs. TAIR10
Match: AT5G15390.1 (tRNA/rRNA methyltransferase (SpoU) family protein)

HSP 1 Score: 145.2 bits (365), Expect = 4.7e-35
Identity = 75/123 (60.98%), Postives = 94/123 (76.42%), Query Frame = 0


Query: 91  QDTVEHLL-THSDDVARLMKMERRPINLDGDEYPRQGRWFPYLDKFSCESSWLNSGEVLD 150
           +DTV+ LL T+  + + LMKMERR  +L   E   +G WFPY D+F C    L+S EVL+
Sbjct: 72  KDTVKGLLTTNRGEASSLMKMERR-CSLSNGEGDCRGSWFPYEDRFRCGEVHLSSREVLE 131

Query: 151 ALDPLILDSRKERFKNVVRHRSYSVCLVVEGLSDFGNVSAAFRSADALGFQSVHVVSCDA 210
           A+ P +++ R +RF+ VV +RSYSVCLVVEGLSDFGN+SAAFRSADALG QSVHVVSCD+
Sbjct: 132 AVSPHMMEERTDRFRRVVENRSYSVCLVVEGLSDFGNISAAFRSADALGIQSVHVVSCDS 191

Query: 211 SKR 213
           SKR
Sbjct: 192 SKR 193

[Close]

BLAST of Carg25013 vs. TrEMBL
Match: tr|A0A0A0LC15|A0A0A0LC15_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G824750 PE=3 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 6.8e-81
Identity = 161/216 (74.54%), Postives = 179/216 (82.87%), Query Frame = 0


Query: 1   MASCRIAVRPSLFLLGSCSPRTTQRILPSVSFSSPPLSSYSPFFTAVSNHSSRNNPKAVS 60
           MASCRI  R SLFLL SCSPR TQRI  SV   S  L S+S FFT   N  SR+NP AVS
Sbjct: 1   MASCRIVSRSSLFLLQSCSPRRTQRIFSSVFLPSLHLPSFSLFFT---NRFSRSNPNAVS 60

Query: 61  TRCFSSTSAAASVEVTDSVGSDLEPPEIHTQDTVEHLLTHSDDVARLMKMERRPINLDGD 120
           TRCF+S SAA S    + + +D+EPPE+ TQDTVEHLLTHS+DVARLMKMERR + LDG 
Sbjct: 61  TRCFASISAATSPLEVEDIVADVEPPEVRTQDTVEHLLTHSNDVARLMKMERRSVELDGA 120

Query: 121 EYPRQGRWFPYLDKFSCESSWLNSGEVLDALDPLILDSRKERFKNVVRHRSYSVCLVVEG 180
           EYP +GRWFPYLDK+SC SSWLNSGE+L+ALD LILDSRKERFKNVVR+RSYSVCLVVEG
Sbjct: 121 EYPHKGRWFPYLDKYSCGSSWLNSGEILEALDSLILDSRKERFKNVVRNRSYSVCLVVEG 180

Query: 181 LSDFGNVSAAFRSADALGFQSVHVVSCDASKRCKND 217
           L+DFGNVSAAFRSADALGFQSVHVVSCDASKR + +
Sbjct: 181 LTDFGNVSAAFRSADALGFQSVHVVSCDASKRYREN 213

[Close]

BLAST of Carg25013 vs. TrEMBL
Match: tr|A0A1S3B8M3|A0A1S3B8M3_CUCME (tRNA (Guanosine(18)-2'-O)-methyltransferase OS=Cucumis melo OX=3656 GN=LOC103486969 PE=3 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 2.1e-77
Identity = 162/217 (74.65%), Postives = 181/217 (83.41%), Query Frame = 0


Query: 1   MASCRIAVRPSLFLLGSCSPRTTQRILPSVSFSSPPLSSYSPFFTAVSNHSSRNNPKAVS 60
           MASCRI  R SL LL S SPR TQR+ PSV   S  L S SPFFT   N  SR+NP AVS
Sbjct: 1   MASCRIVSRSSLTLLQSFSPRRTQRVFPSVFLPSLHLPS-SPFFT---NTLSRSNPNAVS 60

Query: 61  TRCFSSTSAAAS-VEVTDSVGSDLEPPEIHTQDTVEHLLTHSDDVARLMKMERRPINLDG 120
           +RCF+S SAA S +E+ D V +D+EPPE+ TQDTVEHLLTHSDDV+RLMKMERRP+ LDG
Sbjct: 61  SRCFASISAATSPLELADIV-ADVEPPEVPTQDTVEHLLTHSDDVSRLMKMERRPVELDG 120

Query: 121 DEYPRQGRWFPYLDKFSCESSWLNSGEVLDALDPLILDSRKERFKNVVRHRSYSVCLVVE 180
            EYP +GRWFPYLDK+S  SSWLNSGE+L+ALD LILD+RKERFKNVVR+RSYSVCLVVE
Sbjct: 121 AEYPHKGRWFPYLDKYSFGSSWLNSGEILEALDSLILDTRKERFKNVVRNRSYSVCLVVE 180

Query: 181 GLSDFGNVSAAFRSADALGFQSVHVVSCDASKRCKND 217
           GLSDFGNVSAAFRSADALGFQSVHVVSCDASKR + +
Sbjct: 181 GLSDFGNVSAAFRSADALGFQSVHVVSCDASKRYREN 212

[Close]

BLAST of Carg25013 vs. TrEMBL
Match: tr|W9QIA5|W9QIA5_9ROSA (tRNA (Guanosine(18)-2'-O)-methyltransferase OS=Morus notabilis OX=981085 GN=L484_020971 PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.6e-48
Identity = 117/216 (54.17%), Postives = 148/216 (68.52%), Query Frame = 0


Query: 1   MASCRIAVRPSLFLLGSCSPRTTQRILPSVSFSSPPLSSYSPFFTAVSNHSSRNNPKAVS 60
           MA+C+  V  S+ L    S   + R+  S   +SP L  +SP  ++     +  N + +S
Sbjct: 1   MAACKTLV--SISLSSVASTLRSSRLTLSSPHNSPSL-CFSPSISSPQGLRALQN-RVLS 60

Query: 61  TRCFSSTSAAASVEVTDSVGSDLEPPEIHTQDTVEHLLTHSDDVARLMKMERRPINLDGD 120
               S   A+ S+E  DS   ++EPPE  TQD +EHLLTH DDV RLMKMERR I+ D  
Sbjct: 61  RSYASIEGASLSIESIDS-PEEIEPPESPTQDNLEHLLTHKDDVVRLMKMERRRIDTD-- 120

Query: 121 EYPRQGRWFPYLDKFSCESSWLNSGEVLDALDPLILDSRKERFKNVVRHRSYSVCLVVEG 180
              R GRWFPYLD+F C  ++L+SGEV++AL+P I++SR ERF+NV  +RSYSVCLVVEG
Sbjct: 121 --QRTGRWFPYLDRFKCGDAYLSSGEVVEALEPHIMESRMERFRNVATNRSYSVCLVVEG 180

Query: 181 LSDFGNVSAAFRSADALGFQSVHVVSCDASKRCKND 217
           LSDFGNVSAAFRSADALGFQSVHVVSCD SKR + +
Sbjct: 181 LSDFGNVSAAFRSADALGFQSVHVVSCDGSKRYREN 207

[Close]

BLAST of Carg25013 vs. TrEMBL
Match: tr|A0A251Q5N4|A0A251Q5N4_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G259900 PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.9e-47
Identity = 119/219 (54.34%), Postives = 144/219 (65.75%), Query Frame = 0


Query: 1   MASCRIAVRPSLFLLGSCSPRTTQRILPSVSFSSPPLSSYSPFFTAVSNHSSRNNPKAVS 60
           M++C+  VR SL  + S    + +   P +     P   +SP  +   N   R     V 
Sbjct: 1   MSACKTLVRTSLSSISS----SLRASGPPIPLLHSPSLRFSPLLS--PNQGLRLASHNVP 60

Query: 61  TRCFS--STSAAASVEVTDSVGSDLEPPEIHTQDTVEHLLTHSDDVARLMKMERRPINLD 120
           +R ++  ST AA   +      S LEPPEI TQDTVE LL   +DV RLMKMER P    
Sbjct: 61  SRPYASISTEAADFTDEAQFTDSTLEPPEIPTQDTVEQLLKQKNDVGRLMKMERSP---- 120

Query: 121 GDEYPRQGRWFPYLDKFSC-ESSWLNSGEVLDALDPLILDSRKERFKNVVRHRSYSVCLV 180
              + R GRWFPYLDKFSC E ++LNS EVLDALDP ILD RKERF+ VV++RSYSVCLV
Sbjct: 121 ESAHQRGGRWFPYLDKFSCGEDAYLNSAEVLDALDPYILDVRKERFRRVVKNRSYSVCLV 180

Query: 181 VEGLSDFGNVSAAFRSADALGFQSVHVVSCDASKRCKND 217
           VEGL DFGNVSAAFRSADALGFQSVHV+SCD+SKR +++
Sbjct: 181 VEGLGDFGNVSAAFRSADALGFQSVHVLSCDSSKRYRDN 209

[Close]

BLAST of Carg25013 vs. TrEMBL
Match: tr|A0A2P5FEV0|A0A2P5FEV0_9ROSA (tRNA/rRNA methyltransferase OS=Trema orientalis OX=63057 GN=TorRG33x02_079120 PE=3 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.1e-46
Identity = 121/224 (54.02%), Postives = 143/224 (63.84%), Query Frame = 0


Query: 1   MASCRIAVRPSLFLLGSCSPRTTQRILPSVSFSSPPLSSYSPFFTAVSNHSSRNNPKAVS 60
           MA+C+  VR S+F L S      +    S+S    P SS   F T +S+         V 
Sbjct: 1   MAACKTLVRTSIFSLVSTLRSNNRWTSSSISV---PNSSTLCFSTPLSSTPGCPGLSLVQ 60

Query: 61  TRCFSST-----SAAASVE---VTDSVGSDLEPPEIHTQDTVEHLLTHSDDVARLMKMER 120
            R  S T      A  S+E     D   S+    E   +D VEHLLTH +DV  LMKMER
Sbjct: 61  HRAPSRTYASIEGAPVSIEPAYPNDEPQSETLAQETPEEDNVEHLLTHREDVVSLMKMER 120

Query: 121 RPINLDGDEYPRQGRWFPYLDKFSCESSWLNSGEVLDALDPLILDSRKERFKNVVRHRSY 180
           R I LD       G WFPYLD+FSC SS+L+SGEVL+AL P I+DSRKERF+NVVR+RSY
Sbjct: 121 RRIRLDHGRKSGGGGWFPYLDRFSCGSSYLSSGEVLEALGPHIMDSRKERFRNVVRNRSY 180

Query: 181 SVCLVVEGLSDFGNVSAAFRSADALGFQSVHVVSCDASKRCKND 217
           SVCLVVEGL+DFGNVSAAFRSADALGFQSVHVVSCD+SKR + +
Sbjct: 181 SVCLVVEGLTDFGNVSAAFRSADALGFQSVHVVSCDSSKRYREN 221

The following BLAST results are available for this feature:

BLAST of Carg25013 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933839.1	3.0e-112	97.24	uncharacterized protein LOC111441136 [Cucurbita moschata]	[more]
XP_023530258.1	1.2e-110	96.31	uncharacterized protein LOC111792877 [Cucurbita pepo subsp. pepo]	[more]
XP_022969711.1	9.9e-108	94.01	uncharacterized protein LOC111468788 [Cucurbita maxima]	[more]
KGN59530.1	1.0e-80	74.54	hypothetical protein Csa_3G824750 [Cucumis sativus]	[more]
XP_004136796.2	1.0e-80	74.54	PREDICTED: uncharacterized protein LOC101218911 isoform X1 [Cucumis sativus]	[more]

BLAST of Carg25013 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G15390.1	4.7e-35	60.98	tRNA/rRNA methyltransferase (SpoU) family protein	[more]

BLAST of Carg25013 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg25013 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LC15\|A0A0A0LC15_CUCSA	6.8e-81	74.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G824750 PE=3 SV=1	[more]
tr\|A0A1S3B8M3\|A0A1S3B8M3_CUCME	2.1e-77	74.65	tRNA (Guanosine(18)-2'-O)-methyltransferase OS=Cucumis melo OX=3656 GN=LOC103486...	[more]
tr\|W9QIA5\|W9QIA5_9ROSA	2.6e-48	54.17	tRNA (Guanosine(18)-2'-O)-methyltransferase OS=Morus notabilis OX=981085 GN=L484...	[more]
tr\|A0A251Q5N4\|A0A251Q5N4_PRUPE	2.9e-47	54.34	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G259900 PE=3 SV=1	[more]
tr\|A0A2P5FEV0\|A0A2P5FEV0_9ROSA	1.1e-46	54.02	tRNA/rRNA methyltransferase OS=Trema orientalis OX=63057 GN=TorRG33x02_079120 PE...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR029028	Alpha/beta_knot_MTases
IPR029026	tRNA_m1G_MTases_N

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25013-RA	Carg25013-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029026	tRNA (guanine-N1-)-methyltransferase, N-terminal	GENE3D	G3DSA:3.40.1280.10		coord: 150..215 e-value: 4.6E-11 score: 44.2
None	No IPR available	PANTHER	PTHR43453:SF1	RRNA METHYLASE-LIKE PROTEIN	coord: 76..215
None	No IPR available	PANTHER	PTHR43453	FAMILY NOT NAMED	coord: 76..215
IPR029028	Alpha/beta knot methyltransferases	SUPERFAMILY	SSF75217	alpha/beta knot	coord: 157..208

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25013	Csa3G824750	Cucumber (Chinese Long) v2	carcuB0274
Carg25013	CSPI03G38640	Wild cucumber (PI 183967)	carcpiB0278
Carg25013	CmaCh11G011530	Cucurbita maxima (Rimu)	carcmaB0342
Carg25013	CmoCh11G011950	Cucurbita moschata (Rifu)	carcmoB0346
Carg25013	Lsi03G015200	Bottle gourd (USVL1VR-Ls)	carlsiB220
Carg25013	Cp4.1LG04g00370	Cucurbita pepo (Zucchini)	carcpeB0347
Carg25013	CsGy3G036170	Cucumber (Gy14) v2	carcgybB0261
Carg25013	MELO3C009837.2	Melon (DHL92) v3.6.1	carmedB0259
Carg25013	CsaV3_3G041040	Cucumber (Chinese Long) v3	carcucB0277
Carg25013	Cla97C10G198300	Watermelon (97103) v2	carwmbB0251
Carg25013	Bhi11G002445	Wax gourd	carwgoB0313

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None