Carg25007 (gene) Silver-seed gourd

Overview
NameCarg25007
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptiontranscription termination factor MTEF18, mitochondrial-like
LocationCucurbita_argyrosperma_scaffold_187 : 324235 .. 324976 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTACTTGCAAAAACTTACAAAAATTTCCGTTGTTTCTTCTTCGATTATTGCTGATAGCAATTTCAACTCATTTCGTTTTATGTATTGGATAATTGGATCTTCCCCCGTTGCCTCGAACCCTAGATTTTATCGCACTAAAAAGCCTCCCCAAACGGGAGAATGTGGAAATTCCGGGGGAATTTCGACTAGGGTTAGCAGAAACGGTAATCGGATTTCTCGGGCCACTAGAAAGGAGGCGCAGGCTGCGTGCGTTGTTGGAATATTTGCATTCTACTAGAGGGATTCAGTTTATGGATGCTGAGAATATGAGTAGAAATTCACCAATCTTTCTTGAAAAACTTCTAGGAAGAGTTGAACATGAGAGCGATATTGGGCGATTGATTACTCGATTCTTGCGCTATCATCCGATTAATGAATTCGAGCCTTTCTTTGAGAGTGTAGGCCTGCAACCTGCAGAGTATAATGTGTTTCTTCCCCGTGATTTGATGTTCTTGAGTGATGATAGTTTATTGCTAGAGAACTATAATGTGTTGTGTAACTATGGAATTGAACGAAATAAGATAGGGAAGATCTACAAGGAGGCGACTCAGATATTTCGGTATGACTACGGCGTTTTGGTCTCGACTTTGGAAGTGTATGAAGAACTTGGTCTCAGCCAAGCTAGTGTAGTTAAATTTGTTGTTTGTAGCCCTTATCCATTGGTTGGTGGTGCTAATGAGGGGTTGAAGAACAGCTGA

mRNA sequence

ATGTCCTACTTGCAAAAACTTACAAAAATTTCCGTTGTTTCTTCTTCGATTATTGCTGATAGCAATTTCAACTCATTTCGTTTTATGTATTGGATAATTGGATCTTCCCCCGTTGCCTCGAACCCTAGATTTTATCGCACTAAAAAGCCTCCCCAAACGGGAGAATGTGGAAATTCCGGGGGAATTTCGACTAGGGTTAGCAGAAACGGGATTCAGTTTATGGATGCTGAGAATATGAGTAGAAATTCACCAATCTTTCTTGAAAAACTTCTAGGAAGAGTTGAACATGAGAGCGATATTGGGCGATTGATTACTCGATTCTTGCGCTATCATCCGATTAATGAATTCGAGCCTTTCTTTGAGAGTGTAGGCCTGCAACCTGCAGAGTATAATGTGTTTCTTCCCCGTGATTTGATGTTCTTGAGTGATGATAGTTTATTGCTAGAGAACTATAATGTGTTGTGTAACTATGGAATTGAACGAAATAAGATAGGGAAGATCTACAAGGAGGCGACTCAGATATTTCGGTATGACTACGGCGTTTTGGTCTCGACTTTGGAAGTGTATGAAGAACTTGGTCTCAGCCAAGCTAGTGTAGTTAAATTTGTTGTTTGTAGCCCTTATCCATTGGTTGGTGGTGCTAATGAGGGGTTGAAGAACAGCTGA

Coding sequence (CDS)

ATGTCCTACTTGCAAAAACTTACAAAAATTTCCGTTGTTTCTTCTTCGATTATTGCTGATAGCAATTTCAACTCATTTCGTTTTATGTATTGGATAATTGGATCTTCCCCCGTTGCCTCGAACCCTAGATTTTATCGCACTAAAAAGCCTCCCCAAACGGGAGAATGTGGAAATTCCGGGGGAATTTCGACTAGGGTTAGCAGAAACGGGATTCAGTTTATGGATGCTGAGAATATGAGTAGAAATTCACCAATCTTTCTTGAAAAACTTCTAGGAAGAGTTGAACATGAGAGCGATATTGGGCGATTGATTACTCGATTCTTGCGCTATCATCCGATTAATGAATTCGAGCCTTTCTTTGAGAGTGTAGGCCTGCAACCTGCAGAGTATAATGTGTTTCTTCCCCGTGATTTGATGTTCTTGAGTGATGATAGTTTATTGCTAGAGAACTATAATGTGTTGTGTAACTATGGAATTGAACGAAATAAGATAGGGAAGATCTACAAGGAGGCGACTCAGATATTTCGGTATGACTACGGCGTTTTGGTCTCGACTTTGGAAGTGTATGAAGAACTTGGTCTCAGCCAAGCTAGTGTAGTTAAATTTGTTGTTTGTAGCCCTTATCCATTGGTTGGTGGTGCTAATGAGGGGTTGAAGAACAGCTGA

Protein sequence

MSYLQKLTKISVVSSSIIADSNFNSFRFMYWIIGSSPVASNPRFYRTKKPPQTGECGNSGGISTRVSRNGIQFMDAENMSRNSPIFLEKLLGRVEHESDIGRLITRFLRYHPINEFEPFFESVGLQPAEYNVFLPRDLMFLSDDSLLLENYNVLCNYGIERNKIGKIYKEATQIFRYDYGVLVSTLEVYEELGLSQASVVKFVVCSPYPLVGGANEGLKNS
Homology
[Close]
BLAST of Carg25007 vs. NCBI nr
Match: XP_022966246.1 (transcription termination factor MTEF18, mitochondrial-like [Cucurbita maxima] >XP_022966247.1 transcription termination factor MTEF18, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 331.3 bits (848), Expect = 2.6e-87
Identity = 171/237 (72.15%), Postives = 187/237 (78.90%), Query Frame = 0 

Query: 1   MSYLQKLTKISVVSSSIIADSNFNSFRFMYWIIGSSPVASNPRFYRTKKPPQTGECGNS- 60
           MSYLQK    S+V+SSIIAD+ FN  R +YW IG SPV SNPRFYRTKK PQ+GECGNS 
Sbjct: 1   MSYLQKFKTFSLVASSIIADNKFNLVRVLYWRIGFSPVFSNPRFYRTKKAPQSGECGNST 60

Query: 61  --GGISTRVSR-----------------NGIQFMDAENMSRNSPIFLEKLLGRVEHESDI 120
              G   R+SR                  GIQFMDAENMS+NSPIFL KLLGRVE+E  I
Sbjct: 61  TGSGNGHRISRAIRKEAQDALLEYLHSTRGIQFMDAENMSKNSPIFLAKLLGRVENEGKI 120

Query: 121 GRLITRFLRYHPINEFEPFFESVGLQPAEYNVFLPRDLMFLSDDSLLLENYNVLCNYGIE 180
           GR ITRFLRYHPINEFEPFFESVGLQPAEYN FLPR++MFLSDD LLLEN +VLCNYGIE
Sbjct: 121 GRSITRFLRYHPINEFEPFFESVGLQPAEYNEFLPREVMFLSDDDLLLENCHVLCNYGIE 180

Query: 181 RNKIGKIYKEATQIFRYDYGVLVSTLEVYEELGLSQASVVKFVVCSPYPLVGGANEG 218
           R+KIGKIYKEATQIFRYDYGVL+S L+ YEELGL QA+VVKFVVC+PY LVGG N G
Sbjct: 181 RSKIGKIYKEATQIFRYDYGVLLSKLKAYEELGLDQATVVKFVVCNPYLLVGGVNNG 237

[Close]
BLAST of Carg25007 vs. NCBI nr
Match: XP_023517366.1 (transcription termination factor MTEF18, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 325.1 bits (832), Expect = 1.9e-85
Identity = 167/237 (70.46%), Postives = 185/237 (78.06%), Query Frame = 0 

Query: 1   MSYLQKLTKISVVSSSIIADSNFNSFRFMYWIIGSSPVASNPRFYRTKKPPQTGECGNS- 60
           MSYLQK    S+V+S IIAD+ FN  R +YW IG SPV SNPRFY TKK PQ+GECGNS 
Sbjct: 1   MSYLQKFKTFSLVASPIIADNKFNLVRVLYWRIGFSPVFSNPRFYGTKKAPQSGECGNST 60

Query: 61  --GGISTRVSR-----------------NGIQFMDAENMSRNSPIFLEKLLGRVEHESDI 120
              G   R+SR                  GIQFMDAEN+S+NSPIFL KLLGRVE+E +I
Sbjct: 61  TGSGNGHRISRAIRKEAQDALLEYLHSTRGIQFMDAENISKNSPIFLAKLLGRVENEGEI 120

Query: 121 GRLITRFLRYHPINEFEPFFESVGLQPAEYNVFLPRDLMFLSDDSLLLENYNVLCNYGIE 180
           GR ITRFLRYHPINEFEPFFESVGLQPAEYN FLPR++MFLSD+ LLLENY+VLCNYGIE
Sbjct: 121 GRSITRFLRYHPINEFEPFFESVGLQPAEYNEFLPREVMFLSDNDLLLENYHVLCNYGIE 180

Query: 181 RNKIGKIYKEATQIFRYDYGVLVSTLEVYEELGLSQASVVKFVVCSPYPLVGGANEG 218
           RNKIGKIYKEATQIFRYDYGVL+S L+ YEELGL Q +VV+FVVCSPY LVGG   G
Sbjct: 181 RNKIGKIYKEATQIFRYDYGVLLSKLKAYEELGLDQPTVVQFVVCSPYLLVGGVKNG 237

[Close]
BLAST of Carg25007 vs. NCBI nr
Match: XP_022158597.1 (transcription termination factor MTEF18, mitochondrial-like [Momordica charantia])

HSP 1 Score: 322.8 bits (826), Expect = 9.2e-85
Identity = 166/241 (68.88%), Postives = 184/241 (76.35%), Query Frame = 0 

Query: 1   MSYLQKLTKISVVSSSIIADSNFNSFRFMYWIIGSSPVASNPRFYRTKKPPQTGECGNSG 60
           MSYLQKL  +S+V SSIIAD+ FN  R +   IGSSP A NPRFYRTK+  Q GEC N G
Sbjct: 1   MSYLQKLRTLSMV-SSIIADNKFNLVRILSSQIGSSPAARNPRFYRTKRAHQAGECENFG 60

Query: 61  GISTRVSRN------------------------GIQFMDAENMSRNSPIFLEKLLGRVEH 120
           G+ TR  RN                        G+QFMDAENMS+NSP+FLEKLLG+VE+
Sbjct: 61  GVPTRSGRNGHRISRATRKEAQAALLEYLHSTRGVQFMDAENMSKNSPLFLEKLLGKVEN 120

Query: 121 ESDIGRLITRFLRYHPINEFEPFFESVGLQPAEYNVFLPRDLMFLSDDSLLLENYNVLCN 180
           + DIGR ITRFLRYHPINEFEPFFES GL PAEYN FLPR+LMFL+DD LLLENY VLCN
Sbjct: 121 DGDIGRSITRFLRYHPINEFEPFFESAGLHPAEYNAFLPRELMFLNDDGLLLENYRVLCN 180

Query: 181 YGIERNKIGKIYKEATQIFRYDYGVLVSTLEVYEELGLSQASVVKFVVCSPYPLVGGANE 218
           YG+E+NKIGKIYKEATQIFRYDYGVL+S L  YEEL LSQA+VVKFVVCSPY LVGG NE
Sbjct: 181 YGVEQNKIGKIYKEATQIFRYDYGVLLSKLRAYEELDLSQATVVKFVVCSPYLLVGGVNE 240

[Close]
BLAST of Carg25007 vs. NCBI nr
Match: XP_022925230.1 (transcription termination factor MTEF18, mitochondrial-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 321.6 bits (823), Expect = 2.1e-84
Identity = 163/219 (74.43%), Postives = 179/219 (81.74%), Query Frame = 0 

Query: 1   MSYLQKLTKISVVSSSIIADSNFNSFRFMYWIIGSSPVASNPRFYRTKKPPQTGECGNS- 60
           MSYLQK    S+ +SSIIAD+ FN  R +YW IG SPV  NPRFY TKK PQ+GECGNS 
Sbjct: 1   MSYLQKFKTFSLAASSIIADNKFNLVRVLYWRIGFSPVFLNPRFYGTKKSPQSGECGNST 60

Query: 61  -----GGISTRVSRNGIQFMDAENMSRNSPIFLEKLLGRVEHESDIGRLITRFLRYHPIN 120
                G   +R  R   QFMDAENMS+NSPIFL KLLGRVE+E +IGR ITRFLRYHPIN
Sbjct: 61  TGSGNGHRISRAIRKEAQFMDAENMSKNSPIFLAKLLGRVENEGEIGRSITRFLRYHPIN 120

Query: 121 EFEPFFESVGLQPAEYNVFLPRDLMFLSDDSLLLENYNVLCNYGIERNKIGKIYKEATQI 180
           EFEPFFESVGLQPAEYN FLPR++MFLSDD LLLENY+VLCNYGIERNKIGKIYKEATQI
Sbjct: 121 EFEPFFESVGLQPAEYNEFLPREVMFLSDDDLLLENYHVLCNYGIERNKIGKIYKEATQI 180

Query: 181 FRYDYGVLVSTLEVYEELGLSQASVVKFVVCSPYPLVGG 214
           F YDYGVL+S L+ YEELGL Q +VV+FVVCSPY LVGG
Sbjct: 181 FWYDYGVLLSKLKAYEELGLDQPTVVQFVVCSPYLLVGG 219

[Close]
BLAST of Carg25007 vs. NCBI nr
Match: XP_022925228.1 (transcription termination factor MTEF18, mitochondrial-like isoform X1 [Cucurbita moschata] >XP_022925229.1 transcription termination factor MTEF18, mitochondrial-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 320.9 bits (821), Expect = 3.5e-84
Identity = 166/233 (71.24%), Postives = 182/233 (78.11%), Query Frame = 0 

Query: 1   MSYLQKLTKISVVSSSIIADSNFNSFRFMYWIIGSSPVASNPRFYRTKKPPQTGECGNS- 60
           MSYLQK    S+ +SSIIAD+ FN  R +YW IG SPV  NPRFY TKK PQ+GECGNS 
Sbjct: 1   MSYLQKFKTFSLAASSIIADNKFNLVRVLYWRIGFSPVFLNPRFYGTKKSPQSGECGNST 60

Query: 61  --GGISTRVSR-----------------NGIQFMDAENMSRNSPIFLEKLLGRVEHESDI 120
              G   R+SR                  GIQFMDAENMS+NSPIFL KLLGRVE+E +I
Sbjct: 61  TGSGNGHRISRAIRKEAQDALLEYLHSTRGIQFMDAENMSKNSPIFLAKLLGRVENEGEI 120

Query: 121 GRLITRFLRYHPINEFEPFFESVGLQPAEYNVFLPRDLMFLSDDSLLLENYNVLCNYGIE 180
           GR ITRFLRYHPINEFEPFFESVGLQPAEYN FLPR++MFLSDD LLLENY+VLCNYGIE
Sbjct: 121 GRSITRFLRYHPINEFEPFFESVGLQPAEYNEFLPREVMFLSDDDLLLENYHVLCNYGIE 180

Query: 181 RNKIGKIYKEATQIFRYDYGVLVSTLEVYEELGLSQASVVKFVVCSPYPLVGG 214
           RNKIGKIYKEATQIF YDYGVL+S L+ YEELGL Q +VV+FVVCSPY LVGG
Sbjct: 181 RNKIGKIYKEATQIFWYDYGVLLSKLKAYEELGLDQPTVVQFVVCSPYLLVGG 233

[Close]
BLAST of Carg25007 vs. TAIR10
Match: AT4G19650.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 169.1 bits (427), Expect = 3.1e-42
Identity = 78/138 (56.52%), Postives = 106/138 (76.81%), Query Frame = 0 

Query: 77  ENMSRNSPIFLEKLLGRV-EHESDIGRLITRFLRYHPINEFEPFFESVGLQPAEYNVFLP 136
           E++S+NSP F+  LL ++ +++ D+ + +T+FLRY+PINEFEPFFES+GL P E+  FLP
Sbjct: 90  EHISKNSPCFMSTLLSKIDDNQKDVSKGLTKFLRYNPINEFEPFFESLGLCPYEFETFLP 149

Query: 137 RDLMFLSDDSLLLENYNVLCNYGIERNKIGKIYKEATQIFRYDYGVLVSTLEVYEELGLS 196
           R LMFLSDD ++ EN++ LCNYGI R KIG++YKEA +IFRY+ G+L   L  YE LGLS
Sbjct: 150 RKLMFLSDDGIMFENFHALCNYGIPRGKIGRMYKEAREIFRYESGMLAMKLRGYENLGLS 209

Query: 197 QASVVKFVVCSPYPLVGG 214
           +A+V+K V   P  LVGG
Sbjct: 210 KATVIKLVTSCPLLLVGG 227

[Close]
BLAST of Carg25007 vs. TAIR10
Match: AT5G06810.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 166.4 bits (420), Expect = 2.0e-41
Identity = 78/151 (51.66%), Postives = 111/151 (73.51%), Query Frame = 0 

Query: 67  SRNGIQFMDAENMSRNSPIFLEKLLGRVE--HESDIGRLITRFLRYHPINEFEPFFESVG 126
           S  G+Q+M AE+MS+NSPIF++ LL +V+    SDI + ITR+LR+HP+NEFEPF ES G
Sbjct: 88  STRGLQYMVAESMSKNSPIFIDNLLKKVDCVTASDINQSITRYLRFHPVNEFEPFLESSG 147

Query: 127 LQPAEYNVFLPRDLMFLSDDSLLLENYNVLCNYGIERNKIGKIYKEATQIFRYDYGVLVS 186
           L P+EYN  +P D +FL ++  LLEN++VLC  G++  +IGKI+KEA ++F Y+ GVL S
Sbjct: 148 LNPSEYNHLVPCDKVFLDEEGFLLENHHVLCYSGVDPKRIGKIFKEAREVFSYETGVLAS 207

Query: 187 TLEVYEELGLSQASVVKFVVCSPYPLVGGAN 216
            ++ YE+LG S+  + K +VCSP  L+G  N
Sbjct: 208 KIKAYEDLGFSRLFLSKLIVCSPRVLMGHTN 238

[Close]
BLAST of Carg25007 vs. TAIR10
Match: AT3G60400.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 91.3 bits (225), Expect = 8.2e-19
Identity = 47/148 (31.76%), Postives = 80/148 (54.05%), Query Frame = 0 

Query: 71  IQFMDAENMSRNSPIFLEKLLGRVEHE-SDIGRLITRFLRYHPINEFEPFFESVGLQPAE 130
           + +  AE ++ N+ + +  L+ +++       + + + L YHPINEFE FFES+G+  +E
Sbjct: 51  LSYTHAEQIASNASVSIRNLILKLDFSVPTFSKSLRKHLSYHPINEFEFFFESIGIDYSE 110

Query: 131 YNVFLPRDLMFLSDDSLLLENYNVLCNYGIERNKIGKIYKEATQIFRYDYGVLVSTLEVY 190
            + FLP    F S+D  +L+    L  +G   NK+GK+YKE   +F    G + S L  +
Sbjct: 111 VSEFLPEKKFFFSEDRTVLDAAFALSGFGFPWNKLGKLYKEERLVFVQRPGEIESRLLKF 170

Query: 191 EELGLSQASVVKFVVCSPYPLVGGANEG 218
           +++G S  +V+   +  P  L GG   G
Sbjct: 171 KDIGFSTVAVIGTCLAIPRTLCGGGELG 198

[Close]
BLAST of Carg25007 vs. TAIR10
Match: AT5G45113.1 (mitochondrial transcription termination factor-related / mTERF-related)

HSP 1 Score: 80.1 bits (196), Expect = 1.9e-15
Identity = 39/67 (58.21%), Postives = 49/67 (73.13%), Query Frame = 0 

Query: 147 LLENYNVLCNYGIERNKIGKIYKEATQIFRYDYGVLVSTLEVYEELGLSQASVVKFVVCS 206
           + EN++VLC YGI R+KIG++YKEA +IF Y+ GVL S LE YE L L +A V+K V C 
Sbjct: 1   MFENFHVLCYYGIPRDKIGRLYKEAREIFVYENGVLASKLEPYEILVLRKAIVIKLVTCC 60

Query: 207 PYPLVGG 214
           P  LVGG
Sbjct: 61  PLLLVGG 67

[Close]
BLAST of Carg25007 vs. Swiss-Prot
Match: sp|Q9M219|MTEFH_ARATH (Transcription termination factor MTEF18, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MTERF18 PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.5e-17
Identity = 47/148 (31.76%), Postives = 80/148 (54.05%), Query Frame = 0 

Query: 71  IQFMDAENMSRNSPIFLEKLLGRVEHE-SDIGRLITRFLRYHPINEFEPFFESVGLQPAE 130
           + +  AE ++ N+ + +  L+ +++       + + + L YHPINEFE FFES+G+  +E
Sbjct: 51  LSYTHAEQIASNASVSIRNLILKLDFSVPTFSKSLRKHLSYHPINEFEFFFESIGIDYSE 110

Query: 131 YNVFLPRDLMFLSDDSLLLENYNVLCNYGIERNKIGKIYKEATQIFRYDYGVLVSTLEVY 190
            + FLP    F S+D  +L+    L  +G   NK+GK+YKE   +F    G + S L  +
Sbjct: 111 VSEFLPEKKFFFSEDRTVLDAAFALSGFGFPWNKLGKLYKEERLVFVQRPGEIESRLLKF 170

Query: 191 EELGLSQASVVKFVVCSPYPLVGGANEG 218
           +++G S  +V+   +  P  L GG   G
Sbjct: 171 KDIGFSTVAVIGTCLAIPRTLCGGGELG 198

[Close]
BLAST of Carg25007 vs. TrEMBL
Match: tr|A0A1S4DU70|A0A1S4DU70_CUCME (transcription termination factor MTEF18, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103486064 PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 3.7e-82
Identity = 163/241 (67.63%), Postives = 184/241 (76.35%), Query Frame = 0 

Query: 1   MSYLQK-LTKISVVSSSIIADSNFNSFRFMYWIIGSSPVASNPRFYRTKKPPQTGECGNS 60
           MSYLQK L ++S++SSSIIADS FN  R +YW IG   VASNPRFY  KK PQT E  NS
Sbjct: 1   MSYLQKNLRELSMLSSSIIADSKFNFVRVLYWGIGFPSVASNPRFYGNKKAPQTEEYENS 60

Query: 61  GGISTRVSRN------------------------GIQFMDAENMSRNSPIFLEKLLGRVE 120
           GG+    SRN                        GI+F+DAENMS+NSPIFL+KLLGRVE
Sbjct: 61  GGMLNMGSRNGHRVSRATIKEAQAALFEYLHSTRGIEFLDAENMSKNSPIFLKKLLGRVE 120

Query: 121 HESDIGRLITRFLRYHPINEFEPFFESVGLQPAEYNVFLPRDLMFLSDDSLLLENYNVLC 180
           H+ DIGR + RFLRY+PINEFEPFFESVGLQPAEYN FLPR+LMFLSDD LLLEN++VLC
Sbjct: 121 HKGDIGRSVMRFLRYNPINEFEPFFESVGLQPAEYNAFLPRNLMFLSDDDLLLENFHVLC 180

Query: 181 NYGIERNKIGKIYKEATQIFRYDYGVLVSTLEVYEELGLSQASVVKFVVCSPYPLVGGAN 217
           NYGIERNK GKIYKEATQIFRYDYGVL S L  YE+LGLSQ +VVK+VVCSPY L+GG N
Sbjct: 181 NYGIERNKTGKIYKEATQIFRYDYGVLFSKLRAYEKLGLSQDTVVKYVVCSPYLLIGGVN 240

[Close]
BLAST of Carg25007 vs. TrEMBL
Match: tr|A0A1S4DWM2|A0A1S4DWM2_CUCME (transcription termination factor MTEF18, mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489881 PE=4 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 1.3e-79
Identity = 156/240 (65.00%), Postives = 182/240 (75.83%), Query Frame = 0 

Query: 1   MSYLQKLTKISVVSSSIIADSNFNSFRFMYWIIGSSPVASNPRFYRTKKPPQTGECGNSG 60
           MSYLQKL  ++++SSSIIA + FN  +  Y  IG SPVASNPRFYRTK+ P+T ECGNSG
Sbjct: 1   MSYLQKLRALAMLSSSIIAHNKFNFVQVSYRRIGFSPVASNPRFYRTKETPKTEECGNSG 60

Query: 61  GISTRVSR------------------------NGIQFMDAENMSRNSPIFLEKLLGRVEH 120
           G+    SR                         GIQF+DAENMS+NSPIFLEKLLG+VEH
Sbjct: 61  GMLNMGSRKGHEITRATIKEAQATLLEYLHFTRGIQFLDAENMSKNSPIFLEKLLGKVEH 120

Query: 121 ESDIGRLITRFLRYHPINEFEPFFESVGLQPAEYNVFLPRDLMFLSDDSLLLENYNVLCN 180
           E +IG  I +FLRYHPINEFEPFFESVGLQPAEYN FLPR+LMFLSD  LLLEN++VLCN
Sbjct: 121 EGNIGWSIMQFLRYHPINEFEPFFESVGLQPAEYNAFLPRNLMFLSDADLLLENFHVLCN 180

Query: 181 YGIERNKIGKIYKEATQIFRYDYGVLVSTLEVYEELGLSQASVVKFVVCSPYPLVGGANE 217
           YGIERNK GKI++EAT+IFRYDYG+L+S L+ YE  GLSQA+VVKFVVCSP  L+ G N+
Sbjct: 181 YGIERNKTGKIFREATEIFRYDYGILLSKLKAYENFGLSQATVVKFVVCSPRLLIDGVND 240

[Close]
BLAST of Carg25007 vs. TrEMBL
Match: tr|A0A1S3BIC3|A0A1S3BIC3_CUCME (transcription termination factor MTEF18, mitochondrial-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489881 PE=4 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 1.3e-79
Identity = 156/240 (65.00%), Postives = 182/240 (75.83%), Query Frame = 0 

Query: 1   MSYLQKLTKISVVSSSIIADSNFNSFRFMYWIIGSSPVASNPRFYRTKKPPQTGECGNSG 60
           MSYLQKL  ++++SSSIIA + FN  +  Y  IG SPVASNPRFYRTK+ P+T ECGNSG
Sbjct: 1   MSYLQKLRALAMLSSSIIAHNKFNFVQVSYRRIGFSPVASNPRFYRTKETPKTEECGNSG 60

Query: 61  GISTRVSR------------------------NGIQFMDAENMSRNSPIFLEKLLGRVEH 120
           G+    SR                         GIQF+DAENMS+NSPIFLEKLLG+VEH
Sbjct: 61  GMLNMGSRKGHEITRATIKEAQATLLEYLHFTRGIQFLDAENMSKNSPIFLEKLLGKVEH 120

Query: 121 ESDIGRLITRFLRYHPINEFEPFFESVGLQPAEYNVFLPRDLMFLSDDSLLLENYNVLCN 180
           E +IG  I +FLRYHPINEFEPFFESVGLQPAEYN FLPR+LMFLSD  LLLEN++VLCN
Sbjct: 121 EGNIGWSIMQFLRYHPINEFEPFFESVGLQPAEYNAFLPRNLMFLSDADLLLENFHVLCN 180

Query: 181 YGIERNKIGKIYKEATQIFRYDYGVLVSTLEVYEELGLSQASVVKFVVCSPYPLVGGANE 217
           YGIERNK GKI++EAT+IFRYDYG+L+S L+ YE  GLSQA+VVKFVVCSP  L+ G N+
Sbjct: 181 YGIERNKTGKIFREATEIFRYDYGILLSKLKAYENFGLSQATVVKFVVCSPRLLIDGVND 240

[Close]
BLAST of Carg25007 vs. TrEMBL
Match: tr|A0A0A0L2G9|A0A0A0L2G9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G507370 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 2.9e-79
Identity = 157/240 (65.42%), Postives = 176/240 (73.33%), Query Frame = 0 

Query: 1   MSYLQKLTKISVVSSSIIADSNFNSFRFMYWIIGSSPVASNPRFYRTKKPPQTGECGNSG 60
           MSYLQ L  +S++SSSIIADS FN  R +YW  G   VASNPRFY  KK PQT E  NSG
Sbjct: 1   MSYLQNLRALSMLSSSIIADSKFNFVRVLYWRFGFPSVASNPRFYGNKKAPQTEEHKNSG 60

Query: 61  GISTRVSRN------------------------GIQFMDAENMSRNSPIFLEKLLGRVEH 120
           G+    SRN                        GIQF DA+ MS+NSPIFL+KLLGRVEH
Sbjct: 61  GMLNMRSRNGRRISRATIKEAQAAMLEYLHSTRGIQFFDADIMSKNSPIFLKKLLGRVEH 120

Query: 121 ESDIGRLITRFLRYHPINEFEPFFESVGLQPAEYNVFLPRDLMFLSDDSLLLENYNVLCN 180
           E DIGR I RFLRYHPINEFEPFFESVGLQPAEYN FLPR+LMFLSDD LLLEN++VL N
Sbjct: 121 EGDIGRSIIRFLRYHPINEFEPFFESVGLQPAEYNAFLPRNLMFLSDDDLLLENFHVLFN 180

Query: 181 YGIERNKIGKIYKEATQIFRYDYGVLVSTLEVYEELGLSQASVVKFVVCSPYPLVGGANE 217
           YG+ERNK GKIYKE TQIFRY+YGVL+S L+ YE+LGLSQA V   VVC+PY L+GG N+
Sbjct: 181 YGVERNKTGKIYKEVTQIFRYEYGVLLSKLKAYEKLGLSQAKVANIVVCNPYLLIGGVND 240

[Close]
BLAST of Carg25007 vs. TrEMBL
Match: tr|A0A2N9FLR3|A0A2N9FLR3_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19608 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 2.5e-62
Identity = 131/236 (55.51%), Postives = 164/236 (69.49%), Query Frame = 0 

Query: 5   QKLTKISVVS--SSIIADSNFNSFRFMYWIIGSSPVASNPRFYRTKKPPQTGEC------ 64
           ++  K++++   SS I +++  S ++ +W  G+  +  NPR+YRTK      EC      
Sbjct: 15  EEFRKVAILKWVSSNILENHLGSSKWTFWQTGAFHMPQNPRYYRTKGTVLAEECEILNET 74

Query: 65  --GNSGGIS-TRVSRN--------------GIQFMDAENMSRNSPIFLEKLLGRVEHESD 124
              NS  +  +R SRN               IQF+DAENMSRNSP FLEKLL RV++E D
Sbjct: 75  SSANSKNVKFSRASRNEAQAALLDYLHSTRSIQFIDAENMSRNSPCFLEKLLKRVKNEED 134

Query: 125 IGRLITRFLRYHPINEFEPFFESVGLQPAEYNVFLPRDLMFLSDDSLLLENYNVLCNYGI 184
           IGR I R LRYHPINEFEPFFES+GL+P+EY   LPRDLMFLSDD LLLEN++VLCNYGI
Sbjct: 135 IGRSIIRLLRYHPINEFEPFFESMGLKPSEYVPLLPRDLMFLSDDELLLENFHVLCNYGI 194

Query: 185 ERNKIGKIYKEATQIFRYDYGVLVSTLEVYEELGLSQASVVKFVVCSPYPLVGGAN 216
            RNKIGKIYKEA +IF YDYGVL S L+ YEELGLSQ++++KF+V SPY L+G  N
Sbjct: 195 ARNKIGKIYKEAKEIFLYDYGVLSSKLQAYEELGLSQSTIIKFIVSSPYLLIGNVN 250

The following BLAST results are available for this feature:
BLAST of Carg25007 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022966246.12.6e-8772.15transcription termination factor MTEF18, mitochondrial-like [Cucurbita maxima] >... [more]
XP_023517366.11.9e-8570.46transcription termination factor MTEF18, mitochondrial-like [Cucurbita pepo subs... [more]
XP_022158597.19.2e-8568.88transcription termination factor MTEF18, mitochondrial-like [Momordica charantia... [more]
XP_022925230.12.1e-8474.43transcription termination factor MTEF18, mitochondrial-like isoform X2 [Cucurbit... [more]
XP_022925228.13.5e-8471.24transcription termination factor MTEF18, mitochondrial-like isoform X1 [Cucurbit... [more]
BLAST of Carg25007 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G19650.13.1e-4256.52Mitochondrial transcription termination factor family protein[more]
AT5G06810.12.0e-4151.66Mitochondrial transcription termination factor family protein[more]
AT3G60400.18.2e-1931.76Mitochondrial transcription termination factor family protein[more]
AT5G45113.11.9e-1558.21mitochondrial transcription termination factor-related / mTERF-related[more]
BLAST of Carg25007 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9M219|MTEFH_ARATH1.5e-1731.76Transcription termination factor MTEF18, mitochondrial OS=Arabidopsis thaliana O... [more]
BLAST of Carg25007 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DU70|A0A1S4DU70_CUCME3.7e-8267.63transcription termination factor MTEF18, mitochondrial-like OS=Cucumis melo OX=3... [more]
tr|A0A1S4DWM2|A0A1S4DWM2_CUCME1.3e-7965.00transcription termination factor MTEF18, mitochondrial-like isoform X1 OS=Cucumi... [more]
tr|A0A1S3BIC3|A0A1S3BIC3_CUCME1.3e-7965.00transcription termination factor MTEF18, mitochondrial-like isoform X2 OS=Cucumi... [more]
tr|A0A0A0L2G9|A0A0A0L2G9_CUCSA2.9e-7965.42Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G507370 PE=4 SV=1[more]
tr|A0A2N9FLR3|A0A2N9FLR3_FAGSY2.5e-6255.51Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19608 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR038538MTERF_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25007-RACarg25007-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3DG3DSA:1.25.70.10coord: 86..220
e-value: 2.2E-6
score: 29.0
NoneNo IPR availablePANTHERPTHR13068:SF38MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEINcoord: 69..218
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 69..218

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg25007MELO3C008910Melon (DHL92) v3.5.1carmeB0529
Carg25007CmaCh03G000310Cucurbita maxima (Rimu)carcmaB0735
Carg25007CmoCh03G000300Cucurbita moschata (Rifu)carcmoB0712
Carg25007Cp4.1LG10g12390Cucurbita pepo (Zucchini)carcpeB0743
Carg25007CsGy4G018900Cucumber (Gy14) v2carcgybB0532
Carg25007MELO3C008910.2Melon (DHL92) v3.6.1carmedB0534
Carg25007CsaV3_4G030480Cucumber (Chinese Long) v3carcucB0563
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None