Carg25007-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCCTACTTGCAAAAACTTACAAAAATTTCCGTTGTTTCTTCTTCGATTATTGCTGATAGCAATTTCAACTCATTTCGTTTTATGTATTGGATAATTGGATCTTCCCCCGTTGCCTCGAACCCTAGATTTTATCGCACTAAAAAGCCTCCCCAAACGGGAGAATGTGGAAATTCCGGGGGAATTTCGACTAGGGTTAGCAGAAACGGTAATCGGATTTCTCGGGCCACTAGAAAGGAGGCGCAGGCTGCGTGCGTTGTTGGAATATTTGCATTCTACTAGAGGGATTCAGTTTATGGATGCTGAGAATATGAGTAGAAATTCACCAATCTTTCTTGAAAAACTTCTAGGAAGAGTTGAACATGAGAGCGATATTGGGCGATTGATTACTCGATTCTTGCGCTATCATCCGATTAATGAATTCGAGCCTTTCTTTGAGAGTGTAGGCCTGCAACCTGCAGAGTATAATGTGTTTCTTCCCCGTGATTTGATGTTCTTGAGTGATGATAGTTTATTGCTAGAGAACTATAATGTGTTGTGTAACTATGGAATTGAACGAAATAAGATAGGGAAGATCTACAAGGAGGCGACTCAGATATTTCGGTATGACTACGGCGTTTTGGTCTCGACTTTGGAAGTGTATGAAGAACTTGGTCTCAGCCAAGCTAGTGTAGTTAAATTTGTTGTTTGTAGCCCTTATCCATTGGTTGGTGGTGCTAATGAGGGGTTGAAGAACAGCTGA ATGTCCTACTTGCAAAAACTTACAAAAATTTCCGTTGTTTCTTCTTCGATTATTGCTGATAGCAATTTCAACTCATTTCGTTTTATGTATTGGATAATTGGATCTTCCCCCGTTGCCTCGAACCCTAGATTTTATCGCACTAAAAAGCCTCCCCAAACGGGAGAATGTGGAAATTCCGGGGGAATTTCGACTAGGGTTAGCAGAAACGGGATTCAGTTTATGGATGCTGAGAATATGAGTAGAAATTCACCAATCTTTCTTGAAAAACTTCTAGGAAGAGTTGAACATGAGAGCGATATTGGGCGATTGATTACTCGATTCTTGCGCTATCATCCGATTAATGAATTCGAGCCTTTCTTTGAGAGTGTAGGCCTGCAACCTGCAGAGTATAATGTGTTTCTTCCCCGTGATTTGATGTTCTTGAGTGATGATAGTTTATTGCTAGAGAACTATAATGTGTTGTGTAACTATGGAATTGAACGAAATAAGATAGGGAAGATCTACAAGGAGGCGACTCAGATATTTCGGTATGACTACGGCGTTTTGGTCTCGACTTTGGAAGTGTATGAAGAACTTGGTCTCAGCCAAGCTAGTGTAGTTAAATTTGTTGTTTGTAGCCCTTATCCATTGGTTGGTGGTGCTAATGAGGGGTTGAAGAACAGCTGA ATGTCCTACTTGCAAAAACTTACAAAAATTTCCGTTGTTTCTTCTTCGATTATTGCTGATAGCAATTTCAACTCATTTCGTTTTATGTATTGGATAATTGGATCTTCCCCCGTTGCCTCGAACCCTAGATTTTATCGCACTAAAAAGCCTCCCCAAACGGGAGAATGTGGAAATTCCGGGGGAATTTCGACTAGGGTTAGCAGAAACGGGATTCAGTTTATGGATGCTGAGAATATGAGTAGAAATTCACCAATCTTTCTTGAAAAACTTCTAGGAAGAGTTGAACATGAGAGCGATATTGGGCGATTGATTACTCGATTCTTGCGCTATCATCCGATTAATGAATTCGAGCCTTTCTTTGAGAGTGTAGGCCTGCAACCTGCAGAGTATAATGTGTTTCTTCCCCGTGATTTGATGTTCTTGAGTGATGATAGTTTATTGCTAGAGAACTATAATGTGTTGTGTAACTATGGAATTGAACGAAATAAGATAGGGAAGATCTACAAGGAGGCGACTCAGATATTTCGGTATGACTACGGCGTTTTGGTCTCGACTTTGGAAGTGTATGAAGAACTTGGTCTCAGCCAAGCTAGTGTAGTTAAATTTGTTGTTTGTAGCCCTTATCCATTGGTTGGTGGTGCTAATGAGGGGTTGAAGAACAGCTGA MSYLQKLTKISVVSSSIIADSNFNSFRFMYWIIGSSPVASNPRFYRTKKPPQTGECGNSGGISTRVSRNGIQFMDAENMSRNSPIFLEKLLGRVEHESDIGRLITRFLRYHPINEFEPFFESVGLQPAEYNVFLPRDLMFLSDDSLLLENYNVLCNYGIERNKIGKIYKEATQIFRYDYGVLVSTLEVYEELGLSQASVVKFVVCSPYPLVGGANEGLKNS
BLAST of Carg25007-RA vs. NCBI nr
Match: XP_022966246.1 (transcription termination factor MTEF18, mitochondrial-like [Cucurbita maxima] >XP_022966247.1 transcription termination factor MTEF18, mitochondrial-like [Cucurbita maxima]) HSP 1 Score: 331.3 bits (848), Expect = 2.6e-87 Identity = 171/237 (72.15%), Postives = 187/237 (78.90%), Query Frame = 0
BLAST of Carg25007-RA vs. NCBI nr
Match: XP_023517366.1 (transcription termination factor MTEF18, mitochondrial-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 325.1 bits (832), Expect = 1.9e-85 Identity = 167/237 (70.46%), Postives = 185/237 (78.06%), Query Frame = 0
BLAST of Carg25007-RA vs. NCBI nr
Match: XP_022158597.1 (transcription termination factor MTEF18, mitochondrial-like [Momordica charantia]) HSP 1 Score: 322.8 bits (826), Expect = 9.2e-85 Identity = 166/241 (68.88%), Postives = 184/241 (76.35%), Query Frame = 0
BLAST of Carg25007-RA vs. NCBI nr
Match: XP_022925230.1 (transcription termination factor MTEF18, mitochondrial-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 321.6 bits (823), Expect = 2.1e-84 Identity = 163/219 (74.43%), Postives = 179/219 (81.74%), Query Frame = 0
BLAST of Carg25007-RA vs. NCBI nr
Match: XP_022925228.1 (transcription termination factor MTEF18, mitochondrial-like isoform X1 [Cucurbita moschata] >XP_022925229.1 transcription termination factor MTEF18, mitochondrial-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 320.9 bits (821), Expect = 3.5e-84 Identity = 166/233 (71.24%), Postives = 182/233 (78.11%), Query Frame = 0
BLAST of Carg25007-RA vs. TAIR10
Match: AT4G19650.1 (Mitochondrial transcription termination factor family protein) HSP 1 Score: 169.1 bits (427), Expect = 3.1e-42 Identity = 78/138 (56.52%), Postives = 106/138 (76.81%), Query Frame = 0
BLAST of Carg25007-RA vs. TAIR10
Match: AT5G06810.1 (Mitochondrial transcription termination factor family protein) HSP 1 Score: 166.4 bits (420), Expect = 2.0e-41 Identity = 78/151 (51.66%), Postives = 111/151 (73.51%), Query Frame = 0
BLAST of Carg25007-RA vs. TAIR10
Match: AT3G60400.1 (Mitochondrial transcription termination factor family protein) HSP 1 Score: 91.3 bits (225), Expect = 8.2e-19 Identity = 47/148 (31.76%), Postives = 80/148 (54.05%), Query Frame = 0
BLAST of Carg25007-RA vs. TAIR10
Match: AT5G45113.1 (mitochondrial transcription termination factor-related / mTERF-related) HSP 1 Score: 80.1 bits (196), Expect = 1.9e-15 Identity = 39/67 (58.21%), Postives = 49/67 (73.13%), Query Frame = 0
BLAST of Carg25007-RA vs. Swiss-Prot
Match: sp|Q9M219|MTEFH_ARATH (Transcription termination factor MTEF18, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MTERF18 PE=1 SV=1) HSP 1 Score: 91.3 bits (225), Expect = 1.5e-17 Identity = 47/148 (31.76%), Postives = 80/148 (54.05%), Query Frame = 0
BLAST of Carg25007-RA vs. TrEMBL
Match: tr|A0A1S4DU70|A0A1S4DU70_CUCME (transcription termination factor MTEF18, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103486064 PE=4 SV=1) HSP 1 Score: 313.5 bits (802), Expect = 3.7e-82 Identity = 163/241 (67.63%), Postives = 184/241 (76.35%), Query Frame = 0
BLAST of Carg25007-RA vs. TrEMBL
Match: tr|A0A1S4DWM2|A0A1S4DWM2_CUCME (transcription termination factor MTEF18, mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489881 PE=4 SV=1) HSP 1 Score: 305.1 bits (780), Expect = 1.3e-79 Identity = 156/240 (65.00%), Postives = 182/240 (75.83%), Query Frame = 0
BLAST of Carg25007-RA vs. TrEMBL
Match: tr|A0A1S3BIC3|A0A1S3BIC3_CUCME (transcription termination factor MTEF18, mitochondrial-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489881 PE=4 SV=1) HSP 1 Score: 305.1 bits (780), Expect = 1.3e-79 Identity = 156/240 (65.00%), Postives = 182/240 (75.83%), Query Frame = 0
BLAST of Carg25007-RA vs. TrEMBL
Match: tr|A0A0A0L2G9|A0A0A0L2G9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G507370 PE=4 SV=1) HSP 1 Score: 303.9 bits (777), Expect = 2.9e-79 Identity = 157/240 (65.42%), Postives = 176/240 (73.33%), Query Frame = 0
BLAST of Carg25007-RA vs. TrEMBL
Match: tr|A0A2N9FLR3|A0A2N9FLR3_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19608 PE=4 SV=1) HSP 1 Score: 247.7 bits (631), Expect = 2.5e-62 Identity = 131/236 (55.51%), Postives = 164/236 (69.49%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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