Carg24604 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24604
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_075 : 615949 .. 617092 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAAGAAAAAAAGAAAAAAATATAGTATACACCTCATTCAAAGAATGTTATAGTGAGAGGATTTGAGTTTTTCTAGTGATCAGTTTTAAACCTGCGACAGGTTACTTGACATTCTTCTCCACAGGATTTTCTGAAGGAAGATACTGCTCTATAGACTTGTTATATTTGATCATCAATTTGGTGCATCGTTAATATGCTGTTCACCAATTTCGTAACTCTTTTGTATGGATCAGGATTGAATTAGAGGTATGCCCTAAAAGGATAAGCATGTTTTAACGCTCTTACCGTCTTGGAGGTTAGTTTGTTAATTTAATCTATGCTTACAACATAAACCGGTAGAGGAAAAAAACAATGGACCAAGGCATGATAAGTCACTTGTCATTTAATTGTTGATGAATTTTGGAGGATCCTTCAGGTGGTGGTGCATTTTACCCATCCATGGTTAGCTGTTTTCTTAGATATTTATTTTTCTCTCAGGCGACAACAGGAGACAGAGGCCAAATTACTTAAAGAAGAAACAGAAAAGAGAGTGGAAGAAGCGATTCGCAAGGAAGTCGAAGAGGGCCTCAACTCCGGGGATGTTAAACAGGAAATAAACAGGAAGTTGGAGGAGGGACGGAGAAGGCTTGCCGAAGAAGTGACAGCTCAACTCGAGAAGGAAAAGGAAGCTGCCCTTGTTGAGGCCAGACGGAAAGAGGTACTACTAATGTTGATTGATCTATTGCTTAATTTTTAAGACTGGTTTGGGTTGGGTTGGGTTGGGTTTGGACAGATGTTTGAGAAATGTGCTATTTGTGGGGTTTTTCTTTTTTTCGTTTCGTTTACAGGAACAAGCTCGAAAAGAAAAAGAAGACCGAGAAAGGATGGTCGAGGAGAGCCGGAGGAGAGTAGAGGAGGCTCAGAGAAGGGAGGCTTTAGAGAGACAAAAGAGAGAGGAGGAAAGATACAGGGAATTGGAAGAGCTACAAAGGCAAAAAGAAGAGGCTATTAAGAGGAAAAAACAGGATGAAGAGGAACAGCGTCTTAAACAGATGAAAGTATTGGGTAAAAACAAATCACGGCCGAAGCTATCATTTGCCATTGGCTCCAAATAAAAACATGTCAAGAAGAAACACAAGTAAATGCTTCAATTTGGGATGACATA

mRNA sequence

ATAAGAAAAAAAGAAAAAAATATAGTATACACCTCATTCAAAGAATGTTATAGTGAGAGGATTTGAGTTTTTCTAGTGATCAGTTTTAAACCTGCGACAGGTTACTTGACATTCTTCTCCACAGGATTTTCTGAAGGAAGATACTGCTCTATAGACTTGTTATATTTGATCATCAATTTGGTGCATCGTTAATATGCTGTTCACCAATTTCGTAACTCTTTTGTATGGATCAGGATTGAATTAGAGGTATGCCCTAAAAGGATAAGCATGTTTTAACGCTCTTACCGTCTTGGAGGTTAGTTTGTTAATTTAATCTATGCTTACAACATAAACCGGTAGAGGAAAAAAACAATGGACCAAGGCATGATAAGTCACTTGTCATTTAATTGTTGATGAATTTTGGAGGATCCTTCAGGTGGTGGTGCATTTTACCCATCCATGGTTAGCTGTTTTCTTAGATATTTATTTTTCTCTCAGGCGACAACAGGAGACAGAGGCCAAATTACTTAAAGAAGAAACAGAAAAGAGAGTGGAAGAAGCGATTCGCAAGGAAGTCGAAGAGGGCCTCAACTCCGGGGATGTTAAACAGGAAATAAACAGGAAGTTGGAGGAGGGACGGAGAAGGCTTGCCGAAGAAGTGACAGCTCAACTCGAGAAGGAAAAGGAAGCTGCCCTTGTTGAGGCCAGACGGAAAGAGGAACAAGCTCGAAAAGAAAAAGAAGACCGAGAAAGGATGGTCGAGGAGAGCCGGAGGAGAGTAGAGGAGGCTCAGAGAAGGGAGGCTTTAGAGAGACAAAAGAGAGAGGAGGAAAGATACAGGGAATTGGAAGAGCTACAAAGGCAAAAAGAAGAGGCTATTAAGAGGAAAAAACAGGATGAAGAGGAACAGCGTCTTAAACAGATGAAAGTATTGGGTAAAAACAAATCACGGCCGAAGCTATCATTTGCCATTGGCTCCAAATAAAAACATGTCAAGAAGAAACACAAGTAAATGCTTCAATTTGGGATGACATA

Coding sequence (CDS)

ATGGTCGAGGAGAGCCGGAGGAGAGTAGAGGAGGCTCAGAGAAGGGAGGCTTTAGAGAGACAAAAGAGAGAGGAGGAAAGATACAGGGAATTGGAAGAGCTACAAAGGCAAAAAGAAGAGGCTATTAAGAGGAAAAAACAGGATGAAGAGGAACAGCGTCTTAAACAGATGAAAGTATTGGGTAAAAACAAATCACGGCCGAAGCTATCATTTGCCATTGGCTCCAAATAA

Protein sequence

MVEESRRRVEEAQRREALERQKREEERYRELEELQRQKEEAIKRKKQDEEEQRLKQMKVLGKNKSRPKLSFAIGSK

Homology

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BLAST of Carg24604 vs. TAIR10
Match: AT1G10890.1 (unknown protein)

HSP 1 Score: 43.1 bits (100), Expect = 8.8e-05
Identity = 20/23 (86.96%), Postives = 22/23 (95.65%), Query Frame = 0


Query: 54  LKQMKVLGKNKSRPKLSFAIGSK 77
           LKQMK+LGKNKSRPKLSFA+ SK
Sbjct: 266 LKQMKLLGKNKSRPKLSFALSSK 288

The following BLAST results are available for this feature:

BLAST of Carg24604 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg24604 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G10890.1	8.8e-05	86.96	unknown protein	[more]

BLAST of Carg24604 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg24604 vs. TrEMBL


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR033371	ARGLU1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24604-RA	Carg24604-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..76
IPR033371	Arginine and glutamate-rich protein 1	PFAM	PF15346	ARGLU	coord: 1..72 e-value: 9.8E-17 score: 61.1
IPR033371	Arginine and glutamate-rich protein 1	PANTHER	PTHR31711	FAMILY NOT NAMED	coord: 1..76

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24604	CmaCh19G003050	Cucurbita maxima (Rimu)	carcmaB0916
Carg24604	CmaCh11G015890	Cucurbita maxima (Rimu)	carcmaB0915
Carg24604	CmoCh11G015310	Cucurbita moschata (Rifu)	carcmoB0889
Carg24604	CmoCh19G003310	Cucurbita moschata (Rifu)	carcmoB0890
Carg24604	Lsi03G008740	Bottle gourd (USVL1VR-Ls)	carlsiB590
Carg24604	Cp4.1LG04g06640	Cucurbita pepo (Zucchini)	carcpeB0920
Carg24604	Cp4.1LG15g02740	Cucurbita pepo (Zucchini)	carcpeB0919
Carg24604	CsGy6G021500	Cucumber (Gy14) v2	carcgybB0642
Carg24604	CsaV3_6G037360	Cucumber (Chinese Long) v3	carcucB0676
Carg24604	Cla97C09G176630	Watermelon (97103) v2	carwmbB0673
Carg24604	Bhi05G000562	Wax gourd	carwgoB0761

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg24604	Carg24016	Silver-seed gourd	carcarB566

The following block(s) are covering this gene:

None