Carg24016 (gene) Silver-seed gourd

NameCarg24016
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_129 : 377982 .. 379628 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCTCCTGCTGTGTGGAAGTTATTCTATCTCTGACTTCGGCCTCCCTTCTTGTATTCTTCTGTAATAACTGGTTGATTTATATTCGTGTTAACTTTTTGGACTTCCAGTTTTCAGTAGTTCTCTTTATGGCTGTTTCCTGCTTGCAAATAATTTATCTAGTCTGGCTTCTCCAACTGGTAGGTTGTTCTGCTTAACCGTCGGCCTTTATCATGCTGACTCAATATGAATTATATGTACGGTCCGGCACTTGTGATTTGTGAAGTTAAACTTTCAGGATGACAGTATTTTCTGACTAGTTTGAGTTTGATAATTCTCTAGGAACCTCAGTTACATGAAATCCCTACTGTTTTAGTTTAAGGGAGTCATAGTTTTGACTTTTTCCTTGACCACAAAAATGGAAGGAACTTTTGCCATTTCGATGTTCTAGAGCTACATGGATACAATTTTCTTTTTGCACATAAGAACAAGAAGAAAAAAAAAAAAAAAAAAACTAATATATTCCCCCATTCAAAGAATGCTCTAGTATAAGAATTTGAGTTTTTCTAGTGATCAGTTTTAAAACTGCACAGGTTACTTGACATTCTTCTCCACAGGCTTTTCTGAAGGAAGATACTGCGTTAGACTTGTTATATTTGATGATCAATTTGGTGCATCGTTAATATGCTGTTCACCAGTTTTGTAACTCTTTTGTATGGATCAGGATTGAATTAGAGGTATGCCCTAAAAGGATAAGCATGTTTTATTGCTCTTATCGTCATGGAGGTTAGTTTGTTAATTTATTATAATGCTTATATAAACCCGGAGACGAAAAAACAGTGGACCAACAAGGCATGATAAGTATGTTGTCTTTTAATCTTTGATTGAATTGGAGGATGCTTCAGGTGTGTTGCATTTAATGTATATAGCCATGGTTAGCTGTTTTCTCAAATATTCATTCTTCTCTCAGGCGACAAAAGGTGACAGAGGCAAAATTTCTTGAAAAAGAAACAGCAAAAAGATTGGAAGAAGCAATTCGTAAGAAAGTCGAAGCGAGCCTGAACGACGATGACGTTAAGGTGGAAATTAACAGGAAGATGGAGGAGGGACGGAGAAGGCTTAACGAAGAAGTGGCAGCTCAACTTGAGAAGGAAAAGGAAGCTGCCCTTATCGAGGCCCAACGGAAAGAGGTACGTTCATTTCTTGGTTTCATTGGTTCGGTTCGATTTGGTTCGGGTAGATGTCTAAGAAGTAGTAGTTGGTTTTGTAGGAAGAAGCTAGAAAAGAGAAGGAAGAAGTAGAAAGGATGGTAGAGGAGAGGCGGAGGAGAGTAGAAGAGGCTCAGAGAAGTGAGGCTTTAGAGAGACAACAGAGGGAGGAGGAGAGATATAGGGAACTTGAAGAGCTACAAAGGAAGAAAGAAGAAGCCATTAAGAGGAAGAAACAGGAAGAAGAGGAACAGCGACTTAACCAGATGAAGCTTTTGGGTAAAAACAAATCACGCCCCAAATTGTCATTTGCCATTGGCTCTAAATAATCAAAATATTTGTCCAAAGTGAAGAAAAAAAAGTAAATGTTTAGTTTTCTTTTTAAGTCGTGAATTTGACTCGATTGTTCTCACTCACGTTCTAACACTTCGTGTAATTTGGGATGACATTTTTTTTTTT

mRNA sequence

ATGAGCTCCTGCTGTGTGGAAGTTATTCTATCTCTGACTTCGGCCTCCCTTCTTGTATTCTTCTGTAATAACTGGTTGATTTATATTCGTGTTAACTTTTTGGACTTCCAGTTTTCAGTAGTTCTCTTTATGGCTGTTTCCTGCTTGCAAATAATTTATCTAGTCTGGCTTCTCCAACTGCCATGGTTAGCTGTTTTCTCAAATATTCATTCTTCTCTCAGGCGACAAAAGGTGACAGAGGCAAAATTTCTTGAAAAAGAAACAGCAAAAAGATTGGAAGAAGCAATTCGTAAGAAAGTCGAAGCGAGCCTGAACGACGATGACGTTAAGGTGGAAATTAACAGGAAGATGGAGGAGGGACGGAGAAGGCTTAACGAAGAAGTGGCAGCTCAACTTGAGAAGGAAAAGGAAGCTGCCCTTATCGAGGCCCAACGGAAAGAGGAAGAAGCTAGAAAAGAGAAGGAAGAAGTAGAAAGGATGGTAGAGGAGAGGCGGAGGAGAGTAGAAGAGGCTCAGAGAAGTGAGGCTTTAGAGAGACAACAGAGGGAGGAGGAGAGATATAGGGAACTTGAAGAGCTACAAAGGAAGAAAGAAGAAGCCATTAAGAGGAAGAAACAGGAAGAAGAGGAACAGCGACTTAACCAGATGAAGCTTTTGGGTAAAAACAAATCACGCCCCAAATTGTCATTTGCCATTGGCTCTAAATAATCAAAATATTTGTCCAAAGTGAAGAAAAAAAAGTAAATGTTTAGTTTTCTTTTTAAGTCGTGAATTTGACTCGATTGTTCTCACTCACGTTCTAACACTTCGTGTAATTTGGGATGACATTTTTTTTTTT

Coding sequence (CDS)

ATGAGCTCCTGCTGTGTGGAAGTTATTCTATCTCTGACTTCGGCCTCCCTTCTTGTATTCTTCTGTAATAACTGGTTGATTTATATTCGTGTTAACTTTTTGGACTTCCAGTTTTCAGTAGTTCTCTTTATGGCTGTTTCCTGCTTGCAAATAATTTATCTAGTCTGGCTTCTCCAACTGCCATGGTTAGCTGTTTTCTCAAATATTCATTCTTCTCTCAGGCGACAAAAGGTGACAGAGGCAAAATTTCTTGAAAAAGAAACAGCAAAAAGATTGGAAGAAGCAATTCGTAAGAAAGTCGAAGCGAGCCTGAACGACGATGACGTTAAGGTGGAAATTAACAGGAAGATGGAGGAGGGACGGAGAAGGCTTAACGAAGAAGTGGCAGCTCAACTTGAGAAGGAAAAGGAAGCTGCCCTTATCGAGGCCCAACGGAAAGAGGAAGAAGCTAGAAAAGAGAAGGAAGAAGTAGAAAGGATGGTAGAGGAGAGGCGGAGGAGAGTAGAAGAGGCTCAGAGAAGTGAGGCTTTAGAGAGACAACAGAGGGAGGAGGAGAGATATAGGGAACTTGAAGAGCTACAAAGGAAGAAAGAAGAAGCCATTAAGAGGAAGAAACAGGAAGAAGAGGAACAGCGACTTAACCAGATGAAGCTTTTGGGTAAAAACAAATCACGCCCCAAATTGTCATTTGCCATTGGCTCTAAATAA

Protein sequence

MSSCCVEVILSLTSASLLVFFCNNWLIYIRVNFLDFQFSVVLFMAVSCLQIIYLVWLLQLPWLAVFSNIHSSLRRQKVTEAKFLEKETAKRLEEAIRKKVEASLNDDDVKVEINRKMEEGRRRLNEEVAAQLEKEKEAALIEAQRKEEEARKEKEEVERMVEERRRRVEEAQRSEALERQQREEERYRELEELQRKKEEAIKRKKQEEEEQRLNQMKLLGKNKSRPKLSFAIGSK
BLAST of Carg24016 vs. NCBI nr
Match: XP_022927717.1 (uncharacterized protein At1g10890-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 96.3 bits (238), Expect = 1.5e-16
Identity = 155/156 (99.36%), Postives = 155/156 (99.36%), Query Frame = 0

Query: 80  EAKFLEKETAKRLEEAIRKKVEASLNDDDVKVEINRKMEEGRRRLNEEVAXXXXXXXXXX 139
           EAKFLEKETAKRLEEAIRKKVEASLNDDDVKVEINRKMEEGRRRLNEEVAXXXXXXXXXX
Sbjct: 81  EAKFLEKETAKRLEEAIRKKVEASLNDDDVKVEINRKMEEGRRRLNEEVAXXXXXXXXXX 140

Query: 140 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 199
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 141 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 200

Query: 200 XXXXXXXXXXXXXXXXMKLLGKNKSRPKLSFAIGSK 236
           XXXXXXXXXXXXXXX MKLLGKNKSRPKLSFAIGSK
Sbjct: 201 XXXXXXXXXXXXXXXQMKLLGKNKSRPKLSFAIGSK 236

BLAST of Carg24016 vs. NCBI nr
Match: XP_022927716.1 (uncharacterized protein At1g10890-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 96.3 bits (238), Expect = 1.5e-16
Identity = 155/156 (99.36%), Postives = 155/156 (99.36%), Query Frame = 0

Query: 80  EAKFLEKETAKRLEEAIRKKVEASLNDDDVKVEINRKMEEGRRRLNEEVAXXXXXXXXXX 139
           EAKFLEKETAKRLEEAIRKKVEASLNDDDVKVEINRKMEEGRRRLNEEVAXXXXXXXXXX
Sbjct: 123 EAKFLEKETAKRLEEAIRKKVEASLNDDDVKVEINRKMEEGRRRLNEEVAXXXXXXXXXX 182

Query: 140 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 199
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 183 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 242

Query: 200 XXXXXXXXXXXXXXXXMKLLGKNKSRPKLSFAIGSK 236
           XXXXXXXXXXXXXXX MKLLGKNKSRPKLSFAIGSK
Sbjct: 243 XXXXXXXXXXXXXXXQMKLLGKNKSRPKLSFAIGSK 278

BLAST of Carg24016 vs. NCBI nr
Match: XP_022927714.1 (uncharacterized protein At1g10890-like isoform X1 [Cucurbita moschata] >XP_022927715.1 uncharacterized protein At1g10890-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 96.3 bits (238), Expect = 1.5e-16
Identity = 155/156 (99.36%), Postives = 155/156 (99.36%), Query Frame = 0

Query: 80  EAKFLEKETAKRLEEAIRKKVEASLNDDDVKVEINRKMEEGRRRLNEEVAXXXXXXXXXX 139
           EAKFLEKETAKRLEEAIRKKVEASLNDDDVKVEINRKMEEGRRRLNEEVAXXXXXXXXXX
Sbjct: 157 EAKFLEKETAKRLEEAIRKKVEASLNDDDVKVEINRKMEEGRRRLNEEVAXXXXXXXXXX 216

Query: 140 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 199
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 217 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 276

Query: 200 XXXXXXXXXXXXXXXXMKLLGKNKSRPKLSFAIGSK 236
           XXXXXXXXXXXXXXX MKLLGKNKSRPKLSFAIGSK
Sbjct: 277 XXXXXXXXXXXXXXXQMKLLGKNKSRPKLSFAIGSK 312

BLAST of Carg24016 vs. NCBI nr
Match: XP_023529908.1 (uncharacterized protein At1g10890-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 86.3 bits (212), Expect = 1.5e-13
Identity = 150/156 (96.15%), Postives = 150/156 (96.15%), Query Frame = 0

Query: 80  EAKFLEKETAKRLEEAIRKKVEASLNDDDVKVEINRKMEEGRRRLNEEVAXXXXXXXXXX 139
           EAKFLEKET KRLEEAIRKKVEASLNDDDVKVEIN KMEEGRRRLNE   XXXXXXXXXX
Sbjct: 122 EAKFLEKETTKRLEEAIRKKVEASLNDDDVKVEINSKMEEGRRRLNEXXXXXXXXXXXXX 181

Query: 140 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 199
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 182 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 241

Query: 200 XXXXXXXXXXXXXXXXMKLLGKNKSRPKLSFAIGSK 236
           XXXXXXXXXXXXXXX MKLLGKNKSRPKLSFAIGSK
Sbjct: 242 XXXXXXXXXXXXXXXQMKLLGKNKSRPKLSFAIGSK 277

BLAST of Carg24016 vs. NCBI nr
Match: XP_023529909.1 (uncharacterized protein At1g10890-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 71.2 bits (173), Expect = 5.1e-09
Identity = 141/145 (97.24%), Postives = 141/145 (97.24%), Query Frame = 0

Query: 91  RLEEAIRKKVEASLNDDDVKVEINRKMEEGRRRLNEEVAXXXXXXXXXXXXXXXXXXXXX 150
           RLEEAIRKKVEASLNDDDVKVEIN KMEEGRRRLNEE  XXXXXXXXXXXXXXXXXXXXX
Sbjct: 91  RLEEAIRKKVEASLNDDDVKVEINSKMEEGRRRLNEEXXXXXXXXXXXXXXXXXXXXXXX 150

Query: 151 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 210
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 151 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 210

Query: 211 XXXXXMKLLGKNKSRPKLSFAIGSK 236
           XXXX MKLLGKNKSRPKLSFAIGSK
Sbjct: 211 XXXXQMKLLGKNKSRPKLSFAIGSK 235

BLAST of Carg24016 vs. TrEMBL
Match: tr|A0A1D6QI07|A0A1D6QI07_MAIZE (Uncharacterized protein OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d052620 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.3e-08
Identity = 36/55 (65.45%), Postives = 48/55 (87.27%), Query Frame = 0

Query: 75  RQKVTEAKFLEKETAKRLEEAIRKKVEASLNDDDVKVEINRKMEEGRRRLNEEVA 130
           RQK  E + LEKETAKR+E+AIR+KVE SLN D++K EI+R++EEGR+R++EEVA
Sbjct: 162 RQKEVELRLLEKETAKRVEQAIRRKVEESLNCDEIKHEIHRRIEEGRKRIHEEVA 216

BLAST of Carg24016 vs. TrEMBL
Match: tr|A0A1D6F6D9|A0A1D6F6D9_MAIZE (Uncharacterized protein OS=Zea mays OX=4577 GN=100286281 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.1e-06
Identity = 31/53 (58.49%), Postives = 45/53 (84.91%), Query Frame = 0

Query: 74  RRQKVTEAKFLEKETAKRLEEAIRKKVEASLNDDDVKVEINRKMEEGRRRLNE 127
           RR+K  E + +E++TAKR+E+AIRKKVE SLN D++K EI R++EEGR+R++E
Sbjct: 71  RRRKEVELRLIEEDTAKRVEQAIRKKVEESLNCDEIKREIQRRIEEGRKRIHE 123

BLAST of Carg24016 vs. TrEMBL
Match: tr|M5XQS3|M5XQS3_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa018653mg PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.6e-06
Identity = 116/162 (71.60%), Postives = 127/162 (78.40%), Query Frame = 0

Query: 76  QKVTEA--KFLEKETAKRLEEAIRKKVEASLNDDDVKVEINRKMEEGRRRLNEEVAXXXX 135
           + +TEA  K LE+ET+KR+E AIR KVE SLN  ++KVEI R++EEGR++L  EVA    
Sbjct: 30  KSITEAELKLLEEETSKRVEVAIRTKVEESLNSVEIKVEIQRQLEEGRKKLLTEVAALLE 89

Query: 136 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 195
                         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 90  KEKEAALVEARNKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 149

Query: 196 XXXXXXXXXXXXXXXXXXXXXXMKLLGKNKSRPKLSFAIGSK 236
           XXXXXXXXXXXXXXXXX     MKLLGKNKSRPKLSFAIGSK
Sbjct: 150 XXXXXXXXXXXXXXXXXARLNQMKLLGKNKSRPKLSFAIGSK 191

BLAST of Carg24016 vs. TrEMBL
Match: tr|A0A1D6F6E4|A0A1D6F6E4_MAIZE (Uncharacterized protein OS=Zea mays OX=4577 GN=100286281 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 7.8e-06
Identity = 32/64 (50.00%), Postives = 49/64 (76.56%), Query Frame = 0

Query: 62  WLAVFSNIHSSLRRQKVTEAKFLEKETAKRLEEAIRKKVEASLNDDDVKVEINRKMEEGR 121
           W  +F+ +    RR+K  E + +E++TAKR+E+AIRKKVE SLN D++K EI R++EEGR
Sbjct: 120 WELLFA-LECVTRRRKEVELRLIEEDTAKRVEQAIRKKVEESLNCDEIKREIQRRIEEGR 179

Query: 122 RRLN 126
           +R++
Sbjct: 180 KRIH 182

BLAST of Carg24016 vs. TrEMBL
Match: tr|A0A1D6F6E0|A0A1D6F6E0_MAIZE (Uncharacterized protein OS=Zea mays OX=4577 GN=100286281 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 7.8e-06
Identity = 32/64 (50.00%), Postives = 49/64 (76.56%), Query Frame = 0

Query: 62  WLAVFSNIHSSLRRQKVTEAKFLEKETAKRLEEAIRKKVEASLNDDDVKVEINRKMEEGR 121
           W  +F+ +    RR+K  E + +E++TAKR+E+AIRKKVE SLN D++K EI R++EEGR
Sbjct: 124 WELLFA-LECVTRRRKEVELRLIEEDTAKRVEQAIRKKVEESLNCDEIKREIQRRIEEGR 183

Query: 122 RRLN 126
           +R++
Sbjct: 184 KRIH 186

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022927717.11.5e-1699.36uncharacterized protein At1g10890-like isoform X3 [Cucurbita moschata][more]
XP_022927716.11.5e-1699.36uncharacterized protein At1g10890-like isoform X2 [Cucurbita moschata][more]
XP_022927714.11.5e-1699.36uncharacterized protein At1g10890-like isoform X1 [Cucurbita moschata] >XP_02292... [more]
XP_023529908.11.5e-1396.15uncharacterized protein At1g10890-like isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_023529909.15.1e-0997.24uncharacterized protein At1g10890-like isoform X3 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1D6QI07|A0A1D6QI07_MAIZE1.3e-0865.45Uncharacterized protein OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d052620 PE=4 SV=1[more]
tr|A0A1D6F6D9|A0A1D6F6D9_MAIZE2.1e-0658.49Uncharacterized protein OS=Zea mays OX=4577 GN=100286281 PE=4 SV=1[more]
tr|M5XQS3|M5XQS3_PRUPE4.6e-0671.60Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa018653mg PE=4 SV=1[more]
tr|A0A1D6F6E4|A0A1D6F6E4_MAIZE7.8e-0650.00Uncharacterized protein OS=Zea mays OX=4577 GN=100286281 PE=4 SV=1[more]
tr|A0A1D6F6E0|A0A1D6F6E0_MAIZE7.8e-0650.00Uncharacterized protein OS=Zea mays OX=4577 GN=100286281 PE=4 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR033371ARGLU1
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24016-RACarg24016-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 114..216
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 151..216
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 151..235
IPR033371Arginine and glutamate-rich protein 1PFAMPF15346ARGLUcoord: 79..231
e-value: 2.5E-37
score: 128.0
IPR033371Arginine and glutamate-rich protein 1PANTHERPTHR31711FAMILY NOT NAMEDcoord: 73..235