Carg24604-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24604-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_075 : 615949 .. 617092 (+)
Sequence length	1014

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAAGAAAAAAAGAAAAAAATATAGTATACACCTCATTCAAAGAATGTTATAGTGAGAGGATTTGAGTTTTTCTAGTGATCAGTTTTAAACCTGCGACAGGTTACTTGACATTCTTCTCCACAGGATTTTCTGAAGGAAGATACTGCTCTATAGACTTGTTATATTTGATCATCAATTTGGTGCATCGTTAATATGCTGTTCACCAATTTCGTAACTCTTTTGTATGGATCAGGATTGAATTAGAGGTATGCCCTAAAAGGATAAGCATGTTTTAACGCTCTTACCGTCTTGGAGGTTAGTTTGTTAATTTAATCTATGCTTACAACATAAACCGGTAGAGGAAAAAAACAATGGACCAAGGCATGATAAGTCACTTGTCATTTAATTGTTGATGAATTTTGGAGGATCCTTCAGGTGGTGGTGCATTTTACCCATCCATGGTTAGCTGTTTTCTTAGATATTTATTTTTCTCTCAGGCGACAACAGGAGACAGAGGCCAAATTACTTAAAGAAGAAACAGAAAAGAGAGTGGAAGAAGCGATTCGCAAGGAAGTCGAAGAGGGCCTCAACTCCGGGGATGTTAAACAGGAAATAAACAGGAAGTTGGAGGAGGGACGGAGAAGGCTTGCCGAAGAAGTGACAGCTCAACTCGAGAAGGAAAAGGAAGCTGCCCTTGTTGAGGCCAGACGGAAAGAGGTACTACTAATGTTGATTGATCTATTGCTTAATTTTTAAGACTGGTTTGGGTTGGGTTGGGTTGGGTTTGGACAGATGTTTGAGAAATGTGCTATTTGTGGGGTTTTTCTTTTTTTCGTTTCGTTTACAGGAACAAGCTCGAAAAGAAAAAGAAGACCGAGAAAGGATGGTCGAGGAGAGCCGGAGGAGAGTAGAGGAGGCTCAGAGAAGGGAGGCTTTAGAGAGACAAAAGAGAGAGGAGGAAAGATACAGGGAATTGGAAGAGCTACAAAGGCAAAAAGAAGAGGCTATTAAGAGGAAAAAACAGGATGAAGAGGAACAGCGTCTTAAACAGATGAAAGTATTGGGTAAAAACAAATCACGGCCGAAGCTATCATTTGCCATTGGCTCCAAATAAAAACATGTCAAGAAGAAACACAAGTAAATGCTTCAATTTGGGATGACATA

mRNA sequence

ATAAGAAAAAAAGAAAAAAATATAGTATACACCTCATTCAAAGAATGTTATAGTGAGAGGATTTGAGTTTTTCTAGTGATCAGTTTTAAACCTGCGACAGGTTACTTGACATTCTTCTCCACAGGATTTTCTGAAGGAAGATACTGCTCTATAGACTTGTTATATTTGATCATCAATTTGGTGCATCGTTAATATGCTGTTCACCAATTTCGTAACTCTTTTGTATGGATCAGGATTGAATTAGAGGTATGCCCTAAAAGGATAAGCATGTTTTAACGCTCTTACCGTCTTGGAGGTTAGTTTGTTAATTTAATCTATGCTTACAACATAAACCGGTAGAGGAAAAAAACAATGGACCAAGGCATGATAAGTCACTTGTCATTTAATTGTTGATGAATTTTGGAGGATCCTTCAGGTGGTGGTGCATTTTACCCATCCATGGTTAGCTGTTTTCTTAGATATTTATTTTTCTCTCAGGCGACAACAGGAGACAGAGGCCAAATTACTTAAAGAAGAAACAGAAAAGAGAGTGGAAGAAGCGATTCGCAAGGAAGTCGAAGAGGGCCTCAACTCCGGGGATGTTAAACAGGAAATAAACAGGAAGTTGGAGGAGGGACGGAGAAGGCTTGCCGAAGAAGTGACAGCTCAACTCGAGAAGGAAAAGGAAGCTGCCCTTGTTGAGGCCAGACGGAAAGAGGAACAAGCTCGAAAAGAAAAAGAAGACCGAGAAAGGATGGTCGAGGAGAGCCGGAGGAGAGTAGAGGAGGCTCAGAGAAGGGAGGCTTTAGAGAGACAAAAGAGAGAGGAGGAAAGATACAGGGAATTGGAAGAGCTACAAAGGCAAAAAGAAGAGGCTATTAAGAGGAAAAAACAGGATGAAGAGGAACAGCGTCTTAAACAGATGAAAGTATTGGGTAAAAACAAATCACGGCCGAAGCTATCATTTGCCATTGGCTCCAAATAAAAACATGTCAAGAAGAAACACAAGTAAATGCTTCAATTTGGGATGACATA

Coding sequence (CDS)

ATGGTCGAGGAGAGCCGGAGGAGAGTAGAGGAGGCTCAGAGAAGGGAGGCTTTAGAGAGACAAAAGAGAGAGGAGGAAAGATACAGGGAATTGGAAGAGCTACAAAGGCAAAAAGAAGAGGCTATTAAGAGGAAAAAACAGGATGAAGAGGAACAGCGTCTTAAACAGATGAAAGTATTGGGTAAAAACAAATCACGGCCGAAGCTATCATTTGCCATTGGCTCCAAATAA

Protein sequence

MVEESRRRVEEAQRREALERQKREEERYRELEELQRQKEEAIKRKKQDEEEQRLKQMKVLGKNKSRPKLSFAIGSK

Homology

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BLAST of Carg24604-RA vs. TAIR10
Match: AT1G10890.1 (unknown protein)

HSP 1 Score: 43.1 bits (100), Expect = 8.8e-05
Identity = 20/23 (86.96%), Postives = 22/23 (95.65%), Query Frame = 0


Query: 54  LKQMKVLGKNKSRPKLSFAIGSK 77
           LKQMK+LGKNKSRPKLSFA+ SK
Sbjct: 266 LKQMKLLGKNKSRPKLSFALSSK 288

The following BLAST results are available for this feature:

BLAST of Carg24604-RA vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg24604-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT1G10890.1	8.8e-05	86.96	unknown protein	[more]

BLAST of Carg24604-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg24604-RA vs. TrEMBL


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR033371	ARGLU1

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg24604	Carg24604	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg24604-RA	Carg24604-RA-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24604-RA.exon.1	Carg24604-RA.exon.1	exon
Carg24604-RA.exon.2	Carg24604-RA.exon.2	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24604-RA.five_prime_UTR.1	Carg24604-RA.five_prime_UTR.1	five_prime_UTR
Carg24604-RA.five_prime_UTR.2	Carg24604-RA.five_prime_UTR.2	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24604-RA.CDS.1	Carg24604-RA.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg24604-RA.three_prime_UTR.1	Carg24604-RA.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..76
IPR033371	Arginine and glutamate-rich protein 1	PFAM	PF15346	ARGLU	coord: 1..72 e-value: 9.8E-17 score: 61.1
IPR033371	Arginine and glutamate-rich protein 1	PANTHER	PTHR31711	FAMILY NOT NAMED	coord: 1..76