Carg24583 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24583
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Pentatricopeptide repeat-containing protein
Location	Cucurbita_argyrosperma_scaffold_075 : 199970 .. 211668 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAACAACGTTGTTTGAGCGTTTTGCCTCGTTACCAGTCGGGACTGTGGCGGTACGACATTTGAAATCAGGGTTTTGCTCTACCATGCTCATCCGGAGGTTTCATCGAGCAGCGACATGGGCGACGCCTCTGTTGCGAGACACAACTGTAAGTTTTCGAACTTGTTTTTCTCTTCGTTTGTCTTCTCGAATCTTTGAATGCTTGGATTTCCTGTTTTATGGTTTATCTGTTCGTTAATTGTCTTCATATGCATTACCATTTTCTGATTGAATCGGAAACGAAGTTCTTAGTTTCTCTTTATTTCTGCTTATATTATGATTATTTTTTATGTATTCAACAAACGGCTAATGGAAGGAAGAACTAGGTACCCTTTTTTTAACTTTCCGTATTGCGATTCTTGCATCAGAATTTTTTGGATTACAATCATCTGTTAGTTCTCCTTTGGTCCTGTTCTGCTTAATTCTCTGTTTTGTGTTATTTGTGAAATAATGAACTGTGGTTAAAAGCTCTCCCCATCACTTATTTCTTATTTTTCTATAGTAGGCAATCCAGGATTTACCCTGAACTATGCCTTTGTTGGTCTAGTTTGATTTTGGAACGTCAAGACATTGGTTGGATATGTTTATAGAAGAATTGCGCATTAACTTCCTGTATACTATATTAACGTACGTTAACTTGTTTCAAACTTCTTTTAAGGAATCTCAATTTATCAATATATGAGCACACAGGTAGGACAAATCATGGAGCTTGGAGTCAACAAGCTGCAAATTGGGAACTCTTGTTACTGCACAATGTTACAAAATCAAATGTCTAAACGTTTTGGTGATAAAGATATGACAGATAAGGTATCTGAGATTAAAAGAAAATTGTTCATGCATAGAAAGTATGACGTATTCTTTAGTTTTTTGATGCTGCAACAGAGTAAAATTAGTTTTGTTGATATTTTAAAGGTTAACCTTTTCTTTTCTTCTTTTGGTATAACTATCTTAGCTCTCTCTATTTATATTTCACTATTTGGCGGCAGAAATGATATTAAGGTTGATGAATTATATTTTATTGAAGGGTTTGAAAAAGGAAGAGAGTCCTATTATCTTTGTCACAATTAGGGTTTAGTGCTGGGTCCTTACTTCTCAAGTTTTTATGCTCTTGAATCTTGTAGTTGTCAGTTTCTTCTACCATTGTGCATTATATCTTGACTTACAAAATGTACTTTCTTTCTTTATTTTCGTTTGTTTCTGTTATCCTGTCAAACATTCCACATATTTGATATGCCTCGAGTACTAAAATAGAGTAATAATGATTATGGAAATTACCCTAAATGTATTTGCTGGTAATTTAGTTAACTCTTGAATTGTCTACCAATGGTCCAGGATGTTAACAATAGTAAACCTTTGTACCAGACTTCAGAGCGAAATATTGGAGACATTAGAAAGCACCAAATTGGGGAAAACGTTTCACGGAAGGACAAAATTGACTTTCTTGTAAATACTGTAAGTATCAATGGGAAAATATCTTCCCTCTTTCTTCTTTCTTTTTTTTGGGGGGTGGGGGTGGTTGGTAGTCAATTAAGTCTTCTCAAAATCAGGTATAGGTGTATTTTCATTTGATGGGTAGCTATTATATTTTCTGATTCCAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAGAAAAAAAGAAAAAAGAAAGACACTTCAAATAATCAAATGCTAAAACTGATTGCTTTGATAATAGTTGCATAAACCAAACACTAATTGACGAGTCTTTTTGTTTCCTATCAAAAGTAATATCAAGATGCCTTTCGCAAGTCCTATTTCCTTCTGTCATTTAATTTATTTACTTCTATAATATATATTTCTTTTTATTCACATTGGGTAAGAAAGCATCAAGAAGTGGTAAACATGAATTTCAGCGAGCTATGATTGTATCTAGATTGTTTGCTCATAACAACTAGAGGGATATTAAAGGTGCTTTGGAAGATCATTTTGAAGTCTCTGTTTTGTTTAATTCTTTCATGGCTGACAAGACTTTACTCAAACTTGATGATGGTAACTCTCCATTGGTTTTAAATCCCGCCGGAAATTGGAAGCTCTGTTGTGATTTTCATTTGCTTATCAAGAAGTGGTCTAGAGATAAGCACGCTCATCTGAATTTCATTGAAAGGTATGGTGGGTGGATCAGAATCAAGAACTTACCTCAACTTATTGGGAACACAATATCTTTGATGCTGTTAAAAATTACTAACACTTAGTATATTGGATTTTACTAAGAGGGACATGGAAGTCAAAAGGCATTTGTGTGAGTTTTTCCTGACTGCTACTGGAATTAATGATAGGAACAGAGGAAATGTGTTTCTTAGATTAGGAGGTGCATTTTTTGATGTCCCAGGGAATGGAGTTTGTATGAGTCTCAATTTTTAGTCATAAAACTTTGAATAAGCTTAAGTGATATTGTAGTTTACCTCAGTGATGCTCAGGGTAACAAAATGGCCAAGGTACTCGGAGGTAGTAGGAACCCGAGATGAAGAGATAATTTTAGTGATAACTACATCATTCCCAATAGTTGGCAACATATTAAACGTTTCATTTCGAGCTTTAGGGCCATTTAAAGACATGGAGTTTCTGAGATATTCAGAAATGGATTTGTACATTCCTCAGATATGGAAGCTTGCTGATCTGTTGACTGAAATAGGGAGTTGAAGGCATTTGCATAAAAATCTTCGAACTATTAGATCATCCAATGTATAGTATAGTAATCGGGCTGAATATCTAATTCAAATTGACATCTGACTCATCATCTGAATCATCGAAAGGAACTGCATTGGAAGATGAATGATCATTCGATGACTTTAAAATATCATGAGAAAATTTGGAACTACCTAGACCATTGTCGTATTCAATCAATACTGATGGGGTATTTTTCTTCAATCTTCTTCCTGGGATAACCTCCTGCTTTTCTAAATGAATCAAAGGGATTGAAGATATTTTCAAAGAACATTTGGTCCGAAGGTACAATATCTTCATTGAATGTGAATGAGATGGGTCTGCAGAATACAAAGGGATTGAAGATTTTTTCCCTGCATAGAATTTTGAATAGGTTACATTAAAACAATCATTTACTTTCTTATTGCTCAAAATTTCTAAAGATTCAAAGACAGTAGGTACTCATCAGTTTGTGCATTGTTTGATAGACTTCCTCATTTTATGCCTTCGTTACATGGGAAGATTGGAGGATTGGTCAGGTTGATCTATTAAAAGTGGGCCCACAGGAATTTCCTCAAGAGGCGCGAGTAAAGGCTCCAAGGGATTCGATAAAGAGCAATTGAACGTATCCTTCTCATTTAGACCTTGATTATAAAATGCAACATCCCCCCGACTCATTTAAGACTATCTTCTAACTCATTGAAGGCAGCCTTCACATGAAGATCACTATCATTAAATGCAACATTCCCTGACTCATTTAAAACCGCATTTTCTGATCCAACTAACCTATGAACTGGTGAGTGTAAAATTTCTTCCTTGGTCATGGTGGTGACGGCTTTATCTTCCATAAATTGCTCTATCCTATTTAAATCCAATGAATTTGAAAAGTCATTTAAAGATAATTCACGGTTGATGATATTAGGAGATTCTAAAGAAGAAGCATCCGAAGGGAAATGCTTCCTTTTTTTCATATCCTTGATCACAATGGTTGCATGAAAGAAAACCACTTAGGGTTTTCTTAACTTCAATACAAGCTCGTTGAAATCAATCAAATTTAGAATATTAGAAGAAATGCGAATAAGGCCCCTGAAATACTCTCCAATTGCTTCAATCGTACTTCGTCTCCAGTTTATTCAAGGTAAGTTGTTGATAGAAATCCAACCTCCATACCCTTCAATAAGCTCCGGATGAGAGTGCTTCTTTTGTGACAGTTTTTCAATTTTCAATAGCAAGTTTCCATAAAATCTCCATTTTCCATCACTAATGTTTACTAATGTTTCCTTGGTTTCCTTCCATTTATTATGAACAAGCAATTTGGAGACAACAAAACGCTCACCGAAATTTTATGTATCACTTCTTTTGCTTCTCTCACCCAAAATGATGGTTCAATCAAGTTGTCAATACAAGAAATCCCTGCAAGCTGATTACTCTTTGGATTATTCCTCTGTTTCATCTCCACAAAGTGGTTATTCTTCAGATTATTCCTCTAATTTGACTTCACAACCTCTGCAGATCTTCTGGTAAATGACTTTTCATTGATCTCTATCTTCATATAATGATCTTCGGGCATTGCCATATTAGGTAGTTGCATTGCGGGCTCACTGTTTTTACTCATGTATCTTTAGGAAATCCCATAGCAATTCCCAGAAAATGACCCATCCATGTTTGGCAAAACCAGCAGACCTTGAGCAATTTCCTTCCTCTTGAAGGTGGCCAAACCACACATCCAATGTGCTAACCTTGGCTTTTCAGATTATTGCTAATGGAAAACCAAGAGGAGATTTATCTAGTTGTTATTCACGTCTTTTACAAAACACATTTTATCTTCAGACTAAATGAAAAAAACGTGTTATGAACACAACTCCTTACCTCCATAATTCAAAATCAACCTAATTATCATGGAGGAAGGTGATTATGAGTATTCATGGAAGATTTTCTTTAGAATCGCTTAAGGATGGTCGTCATGCTTCAAGCCTTAGAAGTCCTTGGTCTAATGTTTCTAAGATCTAGAAAAAGGTTGAATCTTATGTCTCTTTTAAACTTGGAAAAGGTAATCAAATCTTTTTTTGGCAGGACAAAGAGACTGGAGGTATTTCTTTGCAGCATTTTCTTCCTCAATTTTTTGTTCTCTCTTCACCTCCTGATGGTTCTGTTTTTTTAGTTTTGGGATTCTATTCATCTTTCTTGATCTTTAATCTTTCAAAGGTTACTGAAAGACGATGTGATATTGGCTTTTCAATCGTTATTGGGTCCCCTGGATACTTCAATGGTAGATTCTTCTGAGGATTCAAGATCATGGTTATTAGAGCTCTCTGGCTCTTTCTCGGTGAAGTATATCGAGAGAATTAGCTTATGCTACTCCTTTACAGCCAAACCTATTCAAAATAATATGGAAATCTCGTAGTCCAAAGCGTATTAATATTCTGTTGTGGACCATTCCTTTGTAGCAATCACTATTGATTGCCCAGGATGTCCTTGCTCTATATTCTGTTGTGGACCATTCCTTTGTAGCAATCACTATTGATTGCCTAGGATGTATCACCTTTATATTCTCTAAACTTCTCTGGGTATGTGTCACTTTCATACACAACGGTCATGCATATATCACTTTCATGCATATAGGACCCCAAAAAAGTATTGAAGAGGTGAGAAAATGTATAATGATCGCTCACAGGCATGAGATACCACATATATAAAACATTAGTTCTTAAACATGATGCAACATAGAGATTATTTCGTACATAAACGTTCTCATCAAATTTAGCTAGTATCCATAACATCAATCACATCATGACTTGTCATTTCAGGAAAATACATAGTTTAGCATACATCAATCAATCATCTGACCTAGCCTTAAAGCGGTTTAGCATACATCAATCAATCATCTGACCTAGCCTTAAAGCATTCCAAAAGGAAAATCACATTGGCTACACAACCAAAAACAAAAGAGAGGAATATTCCCTATTATGAAGATGTTTTGCCCAACCTAAAAGAAAATTTCGTAGGTAAATCAATAGCTCAAGGATATGAATATTAGACTTAAATCTTGAAAGCTACCATTTACCCAATTGGTTCTTTTCTCAAAGTCGCCCTTAAACCGTATTCAAACAGTCTAAATCTATTCCAACACTACAACAAAAGATGCTGATTGCCACGACTGGCTGTCTACGTGTGGGACGTGTGGGTTGATGCTGATGCCTATTCATTGGAGAAGAAAACGATCCCCCCGAGAGGGGGAAAAGAGATGGAGATAGAAAGAGCCTTTCTAATTTTTGTTTATGACGTCCTAAATGGCTCTTTTTCCTTTCCCATTATTTTTCCTTTTCTACAATCTAGTTAAAAAATTCTAATTAACCCCAAATGAACTTCAAATATAAGAAAAAATCTTTGGGAATACACTTGGGCTCTTAAAATTGAAATACAAAAATTCAATGGATGATTAAATCCTCAAAGTTATGAATTTGAGACGATTAAAAAAAATCTCTCATTCAGAAATTAAATAAATTGATTGTCTCAACTTAACCCACTAAATTTAACTTAACCAAATTAGATCCCAAGAATTCCAATATATCCAATCGAATTCAAACTAATAACCTAAAGATTAAAATAATCTTATCCAAAAATGTAGGCATTACGGATCATGTTTCTTATAATATCTTTATCTTCAATATTAAATCTTGATGTATTTTCTAAAATAATTATACGACCTTGGAGGTTAATGAGTTCTGTAAACGTTGCAGCTTATGGATCTGAGAGATAGTAAGGAGGCTGTTTATGGTGCTCTTGATGCCTGGGTTGCATGGGAACAAGACTTTCCAATAGCATCCCTTAAGCATGCATTGGCTGTCCTTGAGAAAGAAAACCAGTGGCATAGAGTTGTACAGGTATGAGTTGTACCAGCCATTCTTTATCTACTCTCTTTTCCTTTTACCCACTCTTCCCACTTTCATGTTGAATGGAAATTAGTCTTCTCACTAGCCAAAAGGTGTGAAGGACATTAAATTTTTGGGGCAGGTATGTGAGCATGCAATTAGATGCAAATCCACAATATTACTGCTATATTCCCTTCTCGTGTAAACTGCAGAATTTTAGAGCATTGGCTGTGTGATGCAGTATATAATGGGCTATTTTACCAATTCTGTTTTGTGTAAAGTAAAATCTAAGAGGATGCACAAATAAACCCTAGTTTAAGGAAGAGTAAATAGCAAAGACAGTAAGTAGTGGGCTTTGAATGGCTAAGAATCTGTAAGTTACACTATTTAACACTAATATACAGCCTAAGAAGCACCAACACTCCCATTTAGGTAATGCATTTGCTTCGAACACTCCGATACTTGTTGGACACAGACAGTTACCTTGTAACATATTAAGTGATAATTTTTGTACAAAATGAATTAGTCCGATAATTTTTGTTTTTTGTTTTTTTGATAAGAAACAATTTCACTGGTTAATGAAATTTACAAAAAGAATAGATAATCCATGAGGATTACAAAAAGCTTTTCCAATTGGTCAATAGGGAATTGTAACTAGGGAGCCAGCAAAGTGATTATACACTTTACACCAAGACATAGAATAATAAATGAAGAGATCGAAGAACACTTCAAATGGATGAATGTTCTTTATTTAGAAAAATCCTTTGGTTTCTCTCCTTCCATAGAACCCCAAGGGAAGCCTTGTTTATGTGCATCCACAGTAGAGCTCTTGCTTTTTTAAAGGGGTCACGCAACATAACATTGGTGAGAATATCCTTTGCATCTTTAGGAATTGTCATATACCATCCAAAAGCCTTGAGAATTCTGTTCCAAAATTTCAAAGCAAAAGGGCAGTGTATGAATAAATGGTTCTGTGTTTCATCTTGGCCTTGCCTAAAGGATACCAGCTTGGGGAAGTTTCCAAGTATGGCATTCCCGTTTGGAGGTTGTCTTTGGTAGTGATGGTTCTGTGAGATAATTCCCATAGGAAAATTTTGGGTAACTATCGTCTAGATAATTCTAGCCAATGCCGTCTCCAAAAGGTGAGTTGATTATCCTATATTTAATAACAAAGATCTTGTGCATAAGGGACCATTTGGATTAGGTAACCATCTCTATGAATCCTCCCTCTTTGAGAGAACAATAGGTGCAAGGTCAGGACTGAGAGAAGACTGAGATCAGCCACTCTCAGGCTTCCTCGTCCTTCTAATTTCTGCCAAGTTGCAAGTCCCAGAAGCTGTTATCAGTGTTCCATACCCATAACAATCCAAGTCCACTGCTAGCAGATTTGTCCTCTTTGGGCTTTCCTTTTTGGGCTTACCCATACGATTTTTAAAAGGCGTCTGCTTGGGAGAGGATTCCACACCCTTATAAAGGATGTTTCGTTCTCCTCCCCAACCGACGTGGGATCTTACAATCCACCCCCCCTTCAGGGTCCAGCGTCCTCGCTAGCACTCCTTCCTTTCTCCAATCATGTGGGACTCCCACCAAATCCACCCCCCTTTCAGGGCCCAGCGTCCTTACTGGCACACCATCTCGTGTTTACTCCCCTTTGGGGAACAACCTCTGATTTGATAAGGAAATCACTACAAGGGGAGTAAGATTCGGATTACCTTGTTGATCGAATATCTCAAGACAAGAACATTGTTTGAGATTCAAATCACTCCACAAGCAAGATCGATCATGTCTAGCTTGAATGATTCTTGTTGATCAAATATCTCAAATACTTGTTTGAGATTCGAATCACTCCACAAGCAAGATTGAACATGTCGAGCTTGAATGATTCTACATGCAACCTAAACTACATAGAATTGCCAAGAAACTTAGCCATTGGCTAAAGAAAAGCACAAATGCTTCTTTTAATATATTTTCCAAGTCTACCTACAAATACAACATACAAGGCTTTATATAGCCTAAAAAATGAAACTATTAAAGGCGTGTAACATTCATACTTAATGACCATAATTAGCCATTGTGTAAATGTAACCTAAAGTAAATAAAATGTCTTAAAATACAATAACTCTAAATTGTAACCCACCCAAAATTTACAACAATCAAACTTTATTCTTCTTCAATGTAGCATGAATTGAAACATCTTTTGATAATTTTGACAACCTTTTCTTTACATCTTCATTGAAGTATATTGTATGATTGATGTCTCTTGGTTCATATCACTCCTCGCTAGCACATCACCTGGTGTCTGGTTCTGATACCATTTGTAATAGCCCAAACCTACTGCTAGCAGATATTGTCCTCTTTGGGCTTTCCCTTTCGGGCTTACCCTCAAGTTTTTTAAAACGTGTCTGTTAGGGAGAGGTTTCCACACCCTTATAAAGAGTGTTTCGTTCTCCTCCCCAACCGATGTGGGATCTTACAATACCTCTCTAATGGTAGCCTTTTTGCAATGAGGAATTCTGTAAAGTTGGGGGGTAATGAAGGCCATTGAAGTGTTTCCACCCAAGGATCAGTCCAGAAAAGTGTTGTGGCTCCACCACCCACTTGGTAGCATATTCCGATGGTGATAAGATCTTGGTGCTTGATATTGAACATCCATTGGTAGAGAAGATACATACCTACGTAATGTTGTTTACCAAGCTATATCTTGGTGTAAACTGTCTAATATTTTTACTTTCTATAGTTATACCACCCTCATTGTAAATAGGGAAGGTCTTTTGTTAACCCTACGGATTATACATCCCTTTTGTGAGTTTCAATCATCAATGAAATTATCTCTTAAAAAAAAAAAAACTTCCAAGGACTTCCTTGGTTATCTTGACTGGAAAGGAATGGGCGTCTCTACAAAAAAAGACCTATGTTTTTCAAATCTTTTTTTGATAATTTATTTTTTACTGCCCTCTCTTGGTGTAAACTCTCCCCACTCTTCAAAAATCATAGTCTCACATCGGTTGTTCAAAATGTTTTTTTGAATTTCCATGGCTCACTGCCCTTTTGTAATTTTATTTCACAGTCCATGAAATGATTACCTCACTGTTTCTCACAAAAAAAAAAAAAGCTTATTGATGTAAATGCATAAATTTATTGATTTTAAATTCTCTGAATTCGTGGTTTCGTGTTTGTATCTTTGCTTCTTAGTATCCAACTCATAACATTTCTAAAGAATATATGTGAATCATGTTGAGTTTCTTGTTAGAACAATAGTCAAGTCCAACGGTACCTAGCTTGTTACTATTGAATTTAGACAATGAAATGGGTATATGTATAGGTTATAGAAACAAATGCTGTTAGATTCATGCAGATGTCTTGCAGGTAATCAAATGGATGTTAAGCAAGGGGCAAGGAACCACAATGAATGTCTATGGGCAGTTAATACGGGCTTTAGACATGGACCATCGAGCGGAAGAAGCACATAAGTTTTGGGTCATGAAAATTGGTTCGGATCTACATTCAGTTCCTTGGCAATTGTGCAGAAGCATGATATCAATATACTACCGAAACAAAATGCTAGAAGATCTTGTGAAGGTATAATTCTCTCTTTCATTTAGTTAATGTAATGCTAGTGCCTTCTGGAAATGGCTTTTTGTTTGGAATATTGTTTTTTTCTTTTCCCCATTTTCCCATTAAAGTATTTTGATGATTCTCTTCTTTTGGGTTTGTACCTAGAGTATACTTCTATACTTGATTTTGATATCTCCACATAGCCCACGTGATTAGAGCATATCAAGTGTAACGATTCAGGTTCACCGCTAGTAGATATTGTCTTCTTTGGGCTTTTCCTTTCGGGCTTCCCCCTAATGTTTTTAAAACGCGTCTGCTAGAGAGAGGTTCTACACCCTTATAAAGGGTGTTTCGTTCTCTTCCCCAACCGATGTGGGATCTCACAATCCACCCCCCTTCAGGGCCCAGCGTCCTCGTTGGCACTCGTTCCTTTCTCCAATCGAGGTGGGACCCCACCAAATCCATCCCCCTTCGGGGCCTAGTGTCCTTACTGCACACTGCCTCGTGTCTACCGGAGAGGTTTCCACACCTTATAAAGGGTGTTTTGTTCTCCCCAACATCAAGTTTATGTTTCTTTTTACTAGGCTCAGATATTTTGTTGGCCTTCTCAAACAAAACCTTAGTTTTGTTGTTAAGATCTGAACTAGAGTTCCCTTTCTCAAGTGGTGAATGCTAAATGATTATCATATATTCCTATGGCCAGCTGGATAAAAGCATTAAGAACATCGTAATGTAGATCAAATTTGGAAATAAACAAAGGGCCTTAATAGCATACGAGCACAACAATCTAATGGCTTGGCTACACTACATGGTTCCTCTGGTTGAGAGACATTTTGATCCCTTTTAATTATTTTTAGCTCCCCTTGTCCTCTTTTTGATGTTATTAAAGTTTTTGAATTGGCATCTGGTTTGAATATTAATTATGGCAAGAGTGAACTGTTGGGGATAAACATAAGTCATAACACCTGTGGCAAGAACAATGGATAGAATTCTTTAAGATTTTCTTTGGAAAGGCTCGGAAGGTGATGCTGGTTGGCCTAATGTCAATTGGGAGCAGATTCAACTTCCCAAACTCTTGGACGGCCTTTGTGTTGGAGATCCTTTTAGTAATCCTTTGTACTGGGTTCACTTATCAATGAAATTTGTTACACAGATTGATAATATTTATATATATTGATGCAAAATAGTCGATGTGTCGATGAATTTTAAATTTTTGCGGGTCGGATTGCGTTATCCCCGAGTCTCTGTTATGCTAACCTTGCCTTTTGCCTTGTGTAATGTAAAGCTTTTTAAGAATCTTGAAGCTTTTGGGCGTAAACCTCCAGAAAAATCAATAGTGCAAAGGGTAGCAGATGCTTGTGAGATGCTGGGCTTGGTTGAAGAGAAAGAGAGGGTGCTAGTGAAGTATAATTACCTTTTTACCGATGAGAAGAAAGGGTCCATCAAGAAATATAAGGGAAAAAGAAAATCGACCAAGGGCAATCAAGACAATAGCGACCTTATGAAGAAGGCTCAATGAGTGAAATTAAGAGTTTCTAAATTTATTTTTAATTTTATATCTAATA

mRNA sequence

AAAAAACAACGTTGTTTGAGCGTTTTGCCTCGTTACCAGTCGGGACTGTGGCGGTACGACATTTGAAATCAGGGTTTTGCTCTACCATGCTCATCCGGAGGTTTCATCGAGCAGCGACATGGGCGACGCCTCTGTTGCGAGACACAACTGTAGGACAAATCATGGAGCTTGGAGTCAACAAGCTGCAAATTGGGAACTCTTGTTACTGCACAATGTTACAAAATCAAATGTCTAAACGTTTTGGTGATAAAGATATGACAGATAAGGATGTTAACAATAGTAAACCTTTGTACCAGACTTCAGAGCGAAATATTGGAGACATTAGAAAGCACCAAATTGGGGAAAACGTTTCACGGAAGGACAAAATTGACTTTCTTGTAAATACTCTTATGGATCTGAGAGATAGTAAGGAGGCTGTTTATGGTGCTCTTGATGCCTGGGTTGCATGGGAACAAGACTTTCCAATAGCATCCCTTAAGCATGCATTGGCTGTCCTTGAGAAAGAAAACCAGTGGCATAGAGTTGTACAGGTAATCAAATGGATGTTAAGCAAGGGGCAAGGAACCACAATGAATGTCTATGGGCAGTTAATACGGGCTTTAGACATGGACCATCGAGCGGAAGAAGCACATAAGTTTTGGGTCATGAAAATTGGTTCGGATCTACATTCAGTTCCTTGGCAATTGTGCAGAAGCATGATATCAATATACTACCGAAACAAAATGCTAGAAGATCTTGTGAAGCTTTTTAAGAATCTTGAAGCTTTTGGGCGTAAACCTCCAGAAAAATCAATAGTGCAAAGGGTAGCAGATGCTTGTGAGATGCTGGGCTTGGTTGAAGAGAAAGAGAGGGTGCTAGTGAAGTATAATTACCTTTTTACCGATGAGAAGAAAGGGTCCATCAAGAAATATAAGGGAAAAAGAAAATCGACCAAGGGCAATCAAGACAATAGCGACCTTATGAAGAAGGCTCAATGAGTGAAATTAAGAGTTTCTAAATTTATTTTTAATTTTATATCTAATA

Coding sequence (CDS)

ATGCTCATCCGGAGGTTTCATCGAGCAGCGACATGGGCGACGCCTCTGTTGCGAGACACAACTGTAGGACAAATCATGGAGCTTGGAGTCAACAAGCTGCAAATTGGGAACTCTTGTTACTGCACAATGTTACAAAATCAAATGTCTAAACGTTTTGGTGATAAAGATATGACAGATAAGGATGTTAACAATAGTAAACCTTTGTACCAGACTTCAGAGCGAAATATTGGAGACATTAGAAAGCACCAAATTGGGGAAAACGTTTCACGGAAGGACAAAATTGACTTTCTTGTAAATACTCTTATGGATCTGAGAGATAGTAAGGAGGCTGTTTATGGTGCTCTTGATGCCTGGGTTGCATGGGAACAAGACTTTCCAATAGCATCCCTTAAGCATGCATTGGCTGTCCTTGAGAAAGAAAACCAGTGGCATAGAGTTGTACAGGTAATCAAATGGATGTTAAGCAAGGGGCAAGGAACCACAATGAATGTCTATGGGCAGTTAATACGGGCTTTAGACATGGACCATCGAGCGGAAGAAGCACATAAGTTTTGGGTCATGAAAATTGGTTCGGATCTACATTCAGTTCCTTGGCAATTGTGCAGAAGCATGATATCAATATACTACCGAAACAAAATGCTAGAAGATCTTGTGAAGCTTTTTAAGAATCTTGAAGCTTTTGGGCGTAAACCTCCAGAAAAATCAATAGTGCAAAGGGTAGCAGATGCTTGTGAGATGCTGGGCTTGGTTGAAGAGAAAGAGAGGGTGCTAGTGAAGTATAATTACCTTTTTACCGATGAGAAGAAAGGGTCCATCAAGAAATATAAGGGAAAAAGAAAATCGACCAAGGGCAATCAAGACAATAGCGACCTTATGAAGAAGGCTCAATGA

Protein sequence

MLIRRFHRAATWATPLLRDTTVGQIMELGVNKLQIGNSCYCTMLQNQMSKRFGDKDMTDKDVNNSKPLYQTSERNIGDIRKHQIGENVSRKDKIDFLVNTLMDLRDSKEAVYGALDAWVAWEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLEDLVKLFKNLEAFGRKPPEKSIVQRVADACEMLGLVEEKERVLVKYNYLFTDEKKGSIKKYKGKRKSTKGNQDNSDLMKKAQ

Homology

[Close]

BLAST of Carg24583 vs. NCBI nr
Match: XP_022963531.1 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 596.3 bits (1536), Expect = 5.8e-167
Identity = 296/296 (100.00%), Postives = 296/296 (100.00%), Query Frame = 0


Query: 1   MLIRRFHRAATWATPLLRDTTVGQIMELGVNKLQIGNSCYCTMLQNQMSKRFGDKDMTDK 60
           MLIRRFHRAATWATPLLRDTTVGQIMELGVNKLQIGNSCYCTMLQNQMSKRFGDKDMTDK
Sbjct: 1   MLIRRFHRAATWATPLLRDTTVGQIMELGVNKLQIGNSCYCTMLQNQMSKRFGDKDMTDK 60

Query: 61  DVNNSKPLYQTSERNIGDIRKHQIGENVSRKDKIDFLVNTLMDLRDSKEAVYGALDAWVA 120
           DVNNSKPLYQTSERNIGDIRKHQIGENVSRKDKIDFLVNTLMDLRDSKEAVYGALDAWVA
Sbjct: 61  DVNNSKPLYQTSERNIGDIRKHQIGENVSRKDKIDFLVNTLMDLRDSKEAVYGALDAWVA 120

Query: 121 WEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE 180
           WEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE
Sbjct: 121 WEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE 180

Query: 181 AHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLEDLVKLFKNLEAFGRKPPEKSIVQRV 240
           AHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLEDLVKLFKNLEAFGRKPPEKSIVQRV
Sbjct: 181 AHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLEDLVKLFKNLEAFGRKPPEKSIVQRV 240

Query: 241 ADACEMLGLVEEKERVLVKYNYLFTDEKKGSIKKYKGKRKSTKGNQDNSDLMKKAQ 297
           ADACEMLGLVEEKERVLVKYNYLFTDEKKGSIKKYKGKRKSTKGNQDNSDLMKKAQ
Sbjct: 241 ADACEMLGLVEEKERVLVKYNYLFTDEKKGSIKKYKGKRKSTKGNQDNSDLMKKAQ 296

[Close]

BLAST of Carg24583 vs. NCBI nr
Match: XP_022967610.1 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 587.8 bits (1514), Expect = 2.1e-164
Identity = 291/296 (98.31%), Postives = 294/296 (99.32%), Query Frame = 0


Query: 1   MLIRRFHRAATWATPLLRDTTVGQIMELGVNKLQIGNSCYCTMLQNQMSKRFGDKDMTDK 60
           MLIRRFHRAATWATPLLRDTTVGQ+MELGVNKLQIGNSCYCTMLQNQM KRF DKDMTDK
Sbjct: 1   MLIRRFHRAATWATPLLRDTTVGQVMELGVNKLQIGNSCYCTMLQNQMPKRFADKDMTDK 60

Query: 61  DVNNSKPLYQTSERNIGDIRKHQIGENVSRKDKIDFLVNTLMDLRDSKEAVYGALDAWVA 120
           DVNNSKPLYQTSERNIGDIRKHQIGENVSRKDKI+FLVNTLMDLRDSKEAVYGALDAWVA
Sbjct: 61  DVNNSKPLYQTSERNIGDIRKHQIGENVSRKDKINFLVNTLMDLRDSKEAVYGALDAWVA 120

Query: 121 WEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE 180
           WEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE
Sbjct: 121 WEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE 180

Query: 181 AHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLEDLVKLFKNLEAFGRKPPEKSIVQRV 240
           AHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLEDLVKLFK+LEAFGRKPPEKSIVQRV
Sbjct: 181 AHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLEDLVKLFKDLEAFGRKPPEKSIVQRV 240

Query: 241 ADACEMLGLVEEKERVLVKYNYLFTDEKKGSIKKYKGKRKSTKGNQDNSDLMKKAQ 297
           ADACEMLGLVEEKERVLVKYNYLFTDEKKGSIKKYKGKRKSTKGNQDNSDLMKKAQ
Sbjct: 241 ADACEMLGLVEEKERVLVKYNYLFTDEKKGSIKKYKGKRKSTKGNQDNSDLMKKAQ 296

[Close]

BLAST of Carg24583 vs. NCBI nr
Match: XP_023511579.1 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 582.4 bits (1500), Expect = 8.6e-163
Identity = 290/296 (97.97%), Postives = 292/296 (98.65%), Query Frame = 0


Query: 1   MLIRRFHRAATWATPLLRDTTVGQIMELGVNKLQIGNSCYCTMLQNQMSKRFGDKDMTDK 60
           MLIRRFHRAATWATPLLRD TVGQIMELGVNKLQIGNS YCTMLQNQMSKRF DKDMTDK
Sbjct: 1   MLIRRFHRAATWATPLLRDKTVGQIMELGVNKLQIGNSSYCTMLQNQMSKRFADKDMTDK 60

Query: 61  DVNNSKPLYQTSERNIGDIRKHQIGENVSRKDKIDFLVNTLMDLRDSKEAVYGALDAWVA 120
           DVNNSKPLYQTSERNIGDIRKHQIGENVSRKDKI+FLVNTLMDLRDSKEAVYGALDAWVA
Sbjct: 61  DVNNSKPLYQTSERNIGDIRKHQIGENVSRKDKINFLVNTLMDLRDSKEAVYGALDAWVA 120

Query: 121 WEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE 180
           WEQDFPIASLKHAL VLEKENQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE
Sbjct: 121 WEQDFPIASLKHALTVLEKENQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE 180

Query: 181 AHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLEDLVKLFKNLEAFGRKPPEKSIVQRV 240
           AHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLEDLVKLFK+LEAFGRKPPEKSIVQRV
Sbjct: 181 AHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLEDLVKLFKDLEAFGRKPPEKSIVQRV 240

Query: 241 ADACEMLGLVEEKERVLVKYNYLFTDEKKGSIKKYKGKRKSTKGNQDNSDLMKKAQ 297
           ADACEMLGLVEEKERVLVKYNYLFTDEKKGSIKKYKGKRKSTKGNQDNSDLMKKAQ
Sbjct: 241 ADACEMLGLVEEKERVLVKYNYLFTDEKKGSIKKYKGKRKSTKGNQDNSDLMKKAQ 296

[Close]

BLAST of Carg24583 vs. NCBI nr
Match: XP_022963532.1 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X2 [Cucurbita moschata])

HSP 1 Score: 567.8 bits (1462), Expect = 2.2e-158
Identity = 286/296 (96.62%), Postives = 286/296 (96.62%), Query Frame = 0


Query: 1   MLIRRFHRAATWATPLLRDTTVGQIMELGVNKLQIGNSCYCTMLQNQMSKRFGDKDMTDK 60
           MLIRRFHRAATWATPLLRDTTVGQIMELGVNKLQIGNSCYCTMLQNQMSKRFGDKDMTDK
Sbjct: 1   MLIRRFHRAATWATPLLRDTTVGQIMELGVNKLQIGNSCYCTMLQNQMSKRFGDKDMTDK 60

Query: 61  DVNNSKPLYQTSERNIGDIRKHQIGENVSRKDKIDFLVNTLMDLRDSKEAVYGALDAWVA 120
                     TSERNIGDIRKHQIGENVSRKDKIDFLVNTLMDLRDSKEAVYGALDAWVA
Sbjct: 61  ----------TSERNIGDIRKHQIGENVSRKDKIDFLVNTLMDLRDSKEAVYGALDAWVA 120

Query: 121 WEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE 180
           WEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE
Sbjct: 121 WEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE 180

Query: 181 AHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLEDLVKLFKNLEAFGRKPPEKSIVQRV 240
           AHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLEDLVKLFKNLEAFGRKPPEKSIVQRV
Sbjct: 181 AHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLEDLVKLFKNLEAFGRKPPEKSIVQRV 240

Query: 241 ADACEMLGLVEEKERVLVKYNYLFTDEKKGSIKKYKGKRKSTKGNQDNSDLMKKAQ 297
           ADACEMLGLVEEKERVLVKYNYLFTDEKKGSIKKYKGKRKSTKGNQDNSDLMKKAQ
Sbjct: 241 ADACEMLGLVEEKERVLVKYNYLFTDEKKGSIKKYKGKRKSTKGNQDNSDLMKKAQ 286

[Close]

BLAST of Carg24583 vs. NCBI nr
Match: XP_022967611.1 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X2 [Cucurbita maxima])

HSP 1 Score: 559.3 bits (1440), Expect = 7.8e-156
Identity = 281/296 (94.93%), Postives = 284/296 (95.95%), Query Frame = 0


Query: 1   MLIRRFHRAATWATPLLRDTTVGQIMELGVNKLQIGNSCYCTMLQNQMSKRFGDKDMTDK 60
           MLIRRFHRAATWATPLLRDTTVGQ+MELGVNKLQIGNSCYCTMLQNQM KRF DKDMTDK
Sbjct: 1   MLIRRFHRAATWATPLLRDTTVGQVMELGVNKLQIGNSCYCTMLQNQMPKRFADKDMTDK 60

Query: 61  DVNNSKPLYQTSERNIGDIRKHQIGENVSRKDKIDFLVNTLMDLRDSKEAVYGALDAWVA 120
                     TSERNIGDIRKHQIGENVSRKDKI+FLVNTLMDLRDSKEAVYGALDAWVA
Sbjct: 61  ----------TSERNIGDIRKHQIGENVSRKDKINFLVNTLMDLRDSKEAVYGALDAWVA 120

Query: 121 WEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE 180
           WEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE
Sbjct: 121 WEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE 180

Query: 181 AHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLEDLVKLFKNLEAFGRKPPEKSIVQRV 240
           AHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLEDLVKLFK+LEAFGRKPPEKSIVQRV
Sbjct: 181 AHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLEDLVKLFKDLEAFGRKPPEKSIVQRV 240

Query: 241 ADACEMLGLVEEKERVLVKYNYLFTDEKKGSIKKYKGKRKSTKGNQDNSDLMKKAQ 297
           ADACEMLGLVEEKERVLVKYNYLFTDEKKGSIKKYKGKRKSTKGNQDNSDLMKKAQ
Sbjct: 241 ADACEMLGLVEEKERVLVKYNYLFTDEKKGSIKKYKGKRKSTKGNQDNSDLMKKAQ 286

[Close]

BLAST of Carg24583 vs. TAIR10
Match: AT1G04590.2 (BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G18975.4))

HSP 1 Score: 282.7 bits (722), Expect = 2.6e-76
Identity = 148/264 (56.06%), Postives = 194/264 (73.48%), Query Frame = 0


Query: 28  LGVNK------LQIGNSCYCTMLQNQMSKRFGDKDMTDKDVNNSKPLYQTSERNIGDIRK 87
           LGVN+      L++ +  Y  +  +  S +   K+  ++D ++S     + + N  + RK
Sbjct: 79  LGVNQTNKPAFLRVQSMSYQFVADSHSSPKRIVKNEDEEDFSDS-----SKKGNAENPRK 138

Query: 88  HQIGENVSRKDKIDFLVNTLMDLRDSKEAVYGALDAWVAWEQDFPIASLKHALAVLEKEN 147
           HQIGEN+ +KDKI FLVNTL+D+ D+KEAVYGALDAWVAWE++FPIASLK  +A LEKE+
Sbjct: 139 HQIGENIPKKDKIKFLVNTLLDIEDNKEAVYGALDAWVAWERNFPIASLKIVIASLEKEH 198

Query: 148 QWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQLC 207
           QWHR+VQVIKW+LSKGQG TM  YGQLIRALDMD RAEEAH  W  K+G+DLHSVPWQLC
Sbjct: 199 QWHRMVQVIKWILSKGQGNTMGTYGQLIRALDMDRRAEEAHVIWRKKVGNDLHSVPWQLC 258

Query: 208 RSMISIYYRNKMLEDLV---KLFKNLEAFGRKPPEKSIVQRVADACEMLGLVEEKERVLV 267
             M+ IY+RN ML++LV   KLFK+LE++ RKPP+K IVQ VADA E+LG+++EKERV+ 
Sbjct: 259 LQMMRIYFRNNMLQELVKVMKLFKDLESYDRKPPDKHIVQTVADAYELLGMLDEKERVVT 318

Query: 268 KYNYLF----TDEKKGSIKKYKGK 279
           KY++L     +D+K     + K K
Sbjct: 319 KYSHLLLGTPSDDKPSRSSRKKKK 337

[Close]

BLAST of Carg24583 vs. TAIR10
Match: AT4G18975.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 146.0 bits (367), Expect = 3.7e-35
Identity = 76/183 (41.53%), Postives = 112/183 (61.20%), Query Frame = 0


Query: 97  LVNTLMDLRDSKEAVYGALDAWVAWEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSK 156
           LV  L  L + KEAVYGAL+ WVAWE +FPI +   AL +L K +QWHRV+Q+ KWMLSK
Sbjct: 101 LVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKRSQWHRVIQLAKWMLSK 160

Query: 157 GQGTTMNVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLED 216
           GQG TM  Y  L+ A DMD RA+EA   W M + +   S+P +L   MI++Y  + + + 
Sbjct: 161 GQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRLFARMIALYAHHDLHDK 220

Query: 217 LVKLFKNLEAFGRKPPEKSIVQRVADACEMLGLVEEKE----RVLVKYNYLFTDEKKGSI 276
           ++++F ++E     P E S  +RVA A   L   E ++    R L +Y Y++ + ++  +
Sbjct: 221 VIEVFADMEELKVSPDEDS-ARRVARAFRELNQEENRKLILRRYLSEYKYIYFNGERVRV 280

[Close]

BLAST of Carg24583 vs. TAIR10
Match: AT4G21190.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 129.4 bits (324), Expect = 3.6e-30
Identity = 71/192 (36.98%), Postives = 107/192 (55.73%), Query Frame = 0


Query: 97  LVNTLMDLRDSKEAVYGALDAWVAWEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSK 156
           ++  +  L + KE VYGALD+++AWE +FP+  +K AL +LE E +W +++QV KWMLSK
Sbjct: 61  MIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTKWMLSK 120

Query: 157 GQGTTMNVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLED 216
           GQG TM  Y  L+ AL  D+R +EA + W       L   P +    MISIYY+  M + 
Sbjct: 121 GQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRDMHQK 180

Query: 217 LVKLFKNLEAFGRKPPEKSIVQRVADACEMLGLVEEKERVLVKYNYLFTDEKKGSIKKYK 276
           L ++F ++E  G K P  +IV  V      L + ++ E+++ KY        +   +  K
Sbjct: 181 LFEVFADMEELGVK-PNVAIVSMVGKVFVKLEMKDKYEKLMKKY-----PPPQWEFRYIK 240

Query: 277 GKRKSTKGNQDN 289
           G+R   K  Q N
Sbjct: 241 GRRVKVKAKQLN 246

[Close]

BLAST of Carg24583 vs. Swiss-Prot
Match: sp|Q2V3H0|PP322_ARATH (Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g18975 PE=2 SV=2)

HSP 1 Score: 146.0 bits (367), Expect = 6.8e-34
Identity = 76/183 (41.53%), Postives = 112/183 (61.20%), Query Frame = 0


Query: 97  LVNTLMDLRDSKEAVYGALDAWVAWEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSK 156
           LV  L  L + KEAVYGAL+ WVAWE +FPI +   AL +L K +QWHRV+Q+ KWMLSK
Sbjct: 101 LVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKRSQWHRVIQLAKWMLSK 160

Query: 157 GQGTTMNVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLED 216
           GQG TM  Y  L+ A DMD RA+EA   W M + +   S+P +L   MI++Y  + + + 
Sbjct: 161 GQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRLFARMIALYAHHDLHDK 220

Query: 217 LVKLFKNLEAFGRKPPEKSIVQRVADACEMLGLVEEKE----RVLVKYNYLFTDEKKGSI 276
           ++++F ++E     P E S  +RVA A   L   E ++    R L +Y Y++ + ++  +
Sbjct: 221 VIEVFADMEELKVSPDEDS-ARRVARAFRELNQEENRKLILRRYLSEYKYIYFNGERVRV 280

[Close]

BLAST of Carg24583 vs. Swiss-Prot
Match: sp|Q8LG95|PP332_ARATH (Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana OX=3702 GN=EMB1417 PE=2 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 6.5e-29
Identity = 71/192 (36.98%), Postives = 107/192 (55.73%), Query Frame = 0


Query: 97  LVNTLMDLRDSKEAVYGALDAWVAWEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSK 156
           ++  +  L + KE VYGALD+++AWE +FP+  +K AL +LE E +W +++QV KWMLSK
Sbjct: 61  MIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTKWMLSK 120

Query: 157 GQGTTMNVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLED 216
           GQG TM  Y  L+ AL  D+R +EA + W       L   P +    MISIYY+  M + 
Sbjct: 121 GQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRDMHQK 180

Query: 217 LVKLFKNLEAFGRKPPEKSIVQRVADACEMLGLVEEKERVLVKYNYLFTDEKKGSIKKYK 276
           L ++F ++E  G K P  +IV  V      L + ++ E+++ KY        +   +  K
Sbjct: 181 LFEVFADMEELGVK-PNVAIVSMVGKVFVKLEMKDKYEKLMKKY-----PPPQWEFRYIK 240

Query: 277 GKRKSTKGNQDN 289
           G+R   K  Q N
Sbjct: 241 GRRVKVKAKQLN 246

[Close]

BLAST of Carg24583 vs. TrEMBL
Match: tr|A0A1S3C174|A0A1S3C174_CUCME (pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495459 PE=4 SV=1)

HSP 1 Score: 458.8 bits (1179), Expect = 9.5e-126
Identity = 232/300 (77.33%), Postives = 254/300 (84.67%), Query Frame = 0


Query: 1   MLIRRFHRAATWATPLLRDTTVGQIMELGVNKLQIGNSCYCTMLQNQMSKRFGDKDMTDK 60
           MLIRRF+RAA WATPLLR  TVG+ MELGV++LQ+G S YCTM+Q+QM K+  DKD  +K
Sbjct: 1   MLIRRFYRAAAWATPLLRHPTVGKTMELGVSRLQVGCSWYCTMIQDQMYKQLADKDRKNK 60

Query: 61  DVNNSKPLYQTSERNIGDIRKHQIGENVSRKDKIDFLVNTLMDLRDSKEAVYGALDAWVA 120
           DV+NSK L   SE+NIGDIRKH+IGENVSRKDKI FLVNTL+DLRDSKEAVYGALDAWVA
Sbjct: 61  DVDNSKALGHISEQNIGDIRKHKIGENVSRKDKISFLVNTLLDLRDSKEAVYGALDAWVA 120

Query: 121 WEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE 180
           WEQDFPIASLKH LA LEKE QWHR+VQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE
Sbjct: 121 WEQDFPIASLKHVLAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE 180

Query: 181 AHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLEDLVKLFKNLEAFGRKPPEKSIVQRV 240
           AHKFWVMKIGSDLHSVPWQLCRSMI+IYYRNKMLEDLVKLFK+LEAFGRKPP+KSIVQRV
Sbjct: 181 AHKFWVMKIGSDLHSVPWQLCRSMIAIYYRNKMLEDLVKLFKDLEAFGRKPPDKSIVQRV 240

Query: 241 ADACEMLGLVEEKERVLVKYNY-------LFTDEKKGSIKKYKGKRKSTKGNQDNSDLMK 294
           ADACEMLGL+EEKERVLVKY Y                          TKG++DNS+L+K
Sbjct: 241 ADACEMLGLLEEKERVLVKYKYXXXXXXXXXXXXXXXXXXXXXXXXXXTKGSEDNSNLVK 300

[Close]

BLAST of Carg24583 vs. TrEMBL
Match: tr|A0A0A0K3W9|A0A0A0K3W9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G057510 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 4.3e-102
Identity = 180/220 (81.82%), Postives = 198/220 (90.00%), Query Frame = 0


Query: 1   MLIRRFHRAATWATPLLRDTTVGQIMELGVNKLQIGNSCYCTMLQNQMSKRFGDKDMTDK 60
           MLIRR HRAA WATPLLR  TVGQ MELGV++LQ+G+SCYCT +Q+QM ++  DKD  DK
Sbjct: 1   MLIRRIHRAAAWATPLLRHPTVGQTMELGVSRLQVGSSCYCTTIQDQMCQQLADKDRKDK 60

Query: 61  DVNNSKPLYQTSERNIGDIRKHQIGENVSRKDKIDFLVNTLMDLRDSKEAVYGALDAWVA 120
           DVN+SK L   SE+NIGDIRKHQIG+N+SRKDKI FLVNTL+DLRDSKEAVYGALDAWVA
Sbjct: 61  DVNSSKALGHISEQNIGDIRKHQIGKNISRKDKIHFLVNTLLDLRDSKEAVYGALDAWVA 120

Query: 121 WEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE 180
           WEQDFPIA LKH LA LEKE QWHR+VQVIKWMLSKGQGTTMNVYGQLIRALDMDHR EE
Sbjct: 121 WEQDFPIAPLKHVLAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRGEE 180

Query: 181 AHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLEDLVKL 221
           AHKFWVMKIGSDLHSVPWQ+CRSM++IYYRNK LEDLVK+
Sbjct: 181 AHKFWVMKIGSDLHSVPWQVCRSMMAIYYRNKRLEDLVKV 220

[Close]

BLAST of Carg24583 vs. TrEMBL
Match: tr|A0A200R354|A0A200R354_9MAGN (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_9045g36 PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 3.2e-89
Identity = 175/274 (63.87%), Postives = 210/274 (76.64%), Query Frame = 0


Query: 34  QIGNSCYCTMLQNQMSKRFGDKDMTDKDV-NNSKPLYQTSERNIGDIRKHQIGENVSRKD 93
           Q  NSCY TM+Q +M  +   + M   +V  +++ +YQ S  ++G IRKHQ+GENVSRKD
Sbjct: 8   QCCNSCYSTMVQTRMQNQQSQQAMIPSEVQTDNQAMYQPSRSDVGGIRKHQVGENVSRKD 67

Query: 94  KIDFLVNTLMDLRDSKEAVYGALDAWVAWEQDFPIASLKHALAVLEKENQWHRVVQVIKW 153
           K+ FLVNTL+DL+DSKEA+YGALDAWVAWEQ FP  SLK AL  LEKE QWHR   VIKW
Sbjct: 68  KVKFLVNTLLDLKDSKEAIYGALDAWVAWEQSFPTVSLKRALVTLEKEQQWHR---VIKW 127

Query: 154 MLSKGQGTTMNVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQLCRSMISIYYRNK 213
           MLSKGQGTTM  YGQLIRAL+MDHRAEEAH  WVMKIG+DLHSVPWQLC+ MISIYYRN 
Sbjct: 128 MLSKGQGTTMGSYGQLIRALEMDHRAEEAHNIWVMKIGNDLHSVPWQLCKLMISIYYRNN 187

Query: 214 MLEDLVKLFKNLEAFGRKPPEKSIVQRVADACEMLGLVEEKERVLVKYNYLFTDE----- 273
           MLE LVKLFK LEAF RKPP+KS+VQ+VADA E+LGL EE++RVL KYN+LF ++     
Sbjct: 188 MLERLVKLFKGLEAFDRKPPDKSVVQKVADAYEILGLPEEQKRVLEKYNHLFIEQSKVNP 247

Query: 274 ---KKGSIKKYK--GKRKSTKGNQDNSDLMKKAQ 297
              +K S KK +  G+RKST+ + D+   +  AQ
Sbjct: 248 WKSRKASRKKVEKSGERKSTETSNDHMSTIDDAQ 278

[Close]

BLAST of Carg24583 vs. TrEMBL
Match: tr|A0A1Q3B4Q5|A0A1Q3B4Q5_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_06441 PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 3.2e-89
Identity = 176/272 (64.71%), Postives = 205/272 (75.37%), Query Frame = 0


Query: 12  WATPLLRDTTVGQIMELGVNKLQIGNSCYCTMLQNQMSKRFGDKDMTDKDVNNSKPLYQT 71
           W +  +    V +  +LGV +++I N+ Y TM+Q Q+ K+   K  T +D  NS    Q 
Sbjct: 2   WRSSSVMSYLVRRSTQLGVFRVKILNASYGTMVQAQIYKQSTTK-TTPEDRYNSPATCQH 61

Query: 72  SERNIGDIRKHQIGENVSRKDKIDFLVNTLMDLRDSKEAVYGALDAWVAWEQDFPIASLK 131
            E+N+G  +K+  G NVS KDKI FL NTL++L DSKEAVYGALDAWVAWEQ+FPIA LK
Sbjct: 62  EEKNVGGTQKNHTGANVSGKDKITFLTNTLLELNDSKEAVYGALDAWVAWEQNFPIARLK 121

Query: 132 HALAVLEKENQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEEAHKFWVMKIGS 191
           + L  LEKE QWHRV+QVIKWMLSKGQGTTM  YGQLI+ALDMDHR EEAHK W  KIGS
Sbjct: 122 NVLLALEKEQQWHRVIQVIKWMLSKGQGTTMGTYGQLIKALDMDHRTEEAHKLWEKKIGS 181

Query: 192 DLHSVPWQLCRSMISIYYRNKMLEDLVKLFKNLEAFGRKPPEKSIVQRVADACEMLGLVE 251
           DLHSVPWQLC  MISIYYRN MLE LVKLFK LEAF RKPPEKSIVQ+VA+A EMLGL+E
Sbjct: 182 DLHSVPWQLCNRMISIYYRNNMLEKLVKLFKGLEAFDRKPPEKSIVQKVANAYEMLGLLE 241

Query: 252 EKERVLVKYNYLFTDEKKGSIKKYKGKRKSTK 284
           EK+RVL KY  LFT   KG++KK+ GK  S K
Sbjct: 242 EKDRVLEKYKDLFTQTGKGNLKKF-GKSSSKK 271

[Close]

BLAST of Carg24583 vs. TrEMBL
Match: tr|B9SJZ4|B9SJZ4_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0577750 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 1.0e-87
Identity = 172/274 (62.77%), Postives = 207/274 (75.55%), Query Frame = 0


Query: 12  WATPLLRDTTVGQIMELGVNKLQIGNSCY-CTMLQNQMSKRFGDKDMTDKDVNNSKPLYQ 71
           W +P     T G++ ++GV +LQ  N  Y  TM+Q Q+S R        +D ++ K    
Sbjct: 2   WRSPAFSSLT-GRLSQVGVARLQCSNGRYSSTMVQAQISNR-NTPSPRPEDQDDYKTTCH 61

Query: 72  TSERNIGDIRKHQIGENVSRKDKIDFLVNTLMDLRDSKEAVYGALDAWVAWEQDFPIASL 131
            S ++ G ++K+QIG+NVSRK+KIDFL+ TL+DL+DSKEAVYGALDAWVAWE +FPIASL
Sbjct: 62  NSNQSAGGVQKNQIGKNVSRKEKIDFLLKTLLDLKDSKEAVYGALDAWVAWEHNFPIASL 121

Query: 132 KHALAVLEKENQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEEAHKFWVMKIG 191
           K  L +LEKE QWH+VVQVIKWMLSKGQG TM  YGQLIRALDMDHRA EAH FW+ KIG
Sbjct: 122 KRVLILLEKEQQWHKVVQVIKWMLSKGQGNTMGTYGQLIRALDMDHRANEAHMFWLKKIG 181

Query: 192 SDLHSVPWQLCRSMISIYYRNKMLEDLVKLFKNLEAFGRKPPEKSIVQRVADACEMLGLV 251
            DLHSVPWQLC  MIS+YYRN MLE LVKLFK LEAF RKPP+KSI+Q+VADA EMLG++
Sbjct: 182 LDLHSVPWQLCHRMISVYYRNNMLESLVKLFKGLEAFDRKPPDKSILQKVADAYEMLGML 241

Query: 252 EEKERVLVKYNYLFTDEKKGSIKKYK---GKRKS 282
           EEKERVL KY  LF + +KG  KK +    K+KS
Sbjct: 242 EEKERVLQKYKDLFKETEKGRPKKSRSTLAKKKS 273

The following BLAST results are available for this feature:

BLAST of Carg24583 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022963531.1	5.8e-167	100.00	pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 ...	[more]
XP_022967610.1	2.1e-164	98.31	pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 ...	[more]
XP_023511579.1	8.6e-163	97.97	pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 ...	[more]
XP_022963532.1	2.2e-158	96.62	pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X2 ...	[more]
XP_022967611.1	7.8e-156	94.93	pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X2 ...	[more]

BLAST of Carg24583 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G04590.2	2.6e-76	56.06	BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) super...	[more]
AT4G18975.1	3.7e-35	41.53	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G21190.1	3.6e-30	36.98	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of Carg24583 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q2V3H0\|PP322_ARATH	6.8e-34	41.53	Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidop...	[more]
sp\|Q8LG95\|PP332_ARATH	6.5e-29	36.98	Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana OX...	[more]

BLAST of Carg24583 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C174\|A0A1S3C174_CUCME	9.5e-126	77.33	pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Cucumis ...	[more]
tr\|A0A0A0K3W9\|A0A0A0K3W9_CUCSA	4.3e-102	81.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G057510 PE=4 SV=1	[more]
tr\|A0A200R354\|A0A200R354_9MAGN	3.2e-89	63.87	Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_9045g36 PE=4 SV=1	[more]
tr\|A0A1Q3B4Q5\|A0A1Q3B4Q5_CEPFO	3.2e-89	64.71	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_06441 PE=4...	[more]
tr\|B9SJZ4\|B9SJZ4_RICCO	1.0e-87	62.77	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0577750 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24583-RA	Carg24583-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 123..296 e-value: 5.9E-9 score: 37.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 274..296
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 281..296
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 39..288
None	No IPR available	PANTHER	PTHR24015:SF716	SUBFAMILY NOT NAMED	coord: 39..288

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24583	Csa7G056510	Cucumber (Chinese Long) v2	carcuB0666
Carg24583	ClCG09G013520	Watermelon (Charleston Gray)	carwcgB0627
Carg24583	CSPI07G05170	Wild cucumber (PI 183967)	carcpiB0675
Carg24583	Cucsa.345850	Cucumber (Gy14) v1	carcgyB0721
Carg24583	CmoCh19G003090	Cucurbita moschata (Rifu)	carcmoB0890
Carg24583	Lsi03G008070	Bottle gourd (USVL1VR-Ls)	carlsiB590
Carg24583	Cp4.1LG15g02540	Cucurbita pepo (Zucchini)	carcpeB0919
Carg24583	CsGy7G004740	Cucumber (Gy14) v2	carcgybB0643
Carg24583	MELO3C028588.2	Melon (DHL92) v3.6.1	carmedB0654
Carg24583	CsaV3_7G006130	Cucumber (Chinese Long) v3	carcucB0677
Carg24583	Cla97C09G176130	Watermelon (97103) v2	carwmbB0673
Carg24583	Bhi05G000643	Wax gourd	carwgoB0761

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24583	Silver-seed gourd	carcarB566
Carg24583	Cucumber (Gy14) v2	carcgybB0642
Carg24583	Cucumber (Gy14) v1	carcgyB0719
Carg24583	Cucurbita maxima (Rimu)	carcmaB0915
Carg24583	Cucurbita maxima (Rimu)	carcmaB0916
Carg24583	Cucurbita moschata (Rifu)	carcmoB0889
Carg24583	Cucurbita pepo (Zucchini)	carcpeB0920
Carg24583	Wild cucumber (PI 183967)	carcpiB0674
Carg24583	Cucumber (Chinese Long) v2	carcuB0665
Carg24583	Cucumber (Chinese Long) v3	carcucB0676
Carg24583	Melon (DHL92) v3.5.1	carmeB0644
Carg24583	Watermelon (97103) v1	carwmB0645