Csa7G056510 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G056510
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 3337093 .. 3338382 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATCTCGAAGCCTTCGGACGTAAACCCCCAGACAAATCAATAGTTCAGAGGGTTGCAGATGCTTGTGAGATGCTAGGCTTGCTTGAAGAGAAAGAGAGGGTACTCGTAAAGTACAAATACCTTTTTGATGAGAAGGAAGGACCCATGAAGAAATATAAGAGGATTTCGTTTGAAAAATCAAAGAGAAAACGAAAATCAACAAAGGGCACTGAAGACAATAGCAACCTTGTGAAGTCTGAATGAACGAAAGAAACAGGTAAAAATATAAAAGAAATTATGTGTTAGTTAACTTGTTCATTTGTCTCGGCAACCCAGATTATTGTGTTGACGTCTTGTGGGTATAGATATTTTGCTTATCCATATTAATTCAAAAGTATTTGTAGTAAATGATAAAATTAGCTAATTTCGGGCATACCAAGTTGGTTTTCTTTTACATCAATTTTTTCTTTAATCTCAATTTTACACCCATCAAAGTCTATTGATAGTAACTTAAGCGGATATTAATGTTAGATATGTCCTCCTTTCTGTATGTAAGGATATCATTCCAACATTGATAAACTTTAATCCACATACTAGACTATTTAGGCTACTCAAGATTACATCTAACAACCGGTTGGATTTTTAATGTAATGGAGACCTTTAGTATTACAAATTTAGCAATTAAACCTAGATACATAACTAATTAACTACAAGATTTTAAAGCACAAATGACCCAACAAGACATATTGTAGATAGATTTTATCTTAGACTTCCAGTGGTTTGTCCCCATTCTTGCTACTGTTACTGTCTAGTAGTAAAAGTTATTGATTGGTATGTTATAAATGTATTTGATTGTAAAGACCCTCGACAAGTTTTTGCAACCATTATCATCTTCCTCAAGTCATGGGTTCGTAGTAGCCCTCTGATTTATTTTTGGATTTTCGTTTGAAGGTTTAATTTAAAATTTTGTTCTGCACAGATGACGCCTGCTGCTATTGCTGTCAAAATTCAAATAGAAGAAATCATCTGACTGGTAAAACAAAAAGAATCTGGCACCACTCTTGTACTAGTCACAATGCATTAGGTCAGTACAAAACTTTAGTTATAGCAAGAGTTCCATGGATGAGAATGAGTTTCTTTTGTTCTCATTCTTCACATGGAAAGGCAAATCAAGTTGCTTTTTGTTTTTCTCCTATTTTACTAAGCCCAAATGTTTTAGGGAATGCATTAATTATGGTTTATTCTTTAAAGGAAGAGTCTCCAGGTGGATGAATTGACAAAATATGAAGAGCCGGTTGAAATTATAGCGAA

mRNA sequence

ATGCTAGGCTTGCTTGAAGAGAAAGAGAGGGTACTCGTAAAGTACAAATACCTTTTTGATGAGAAGGAAGGACCCATGAAGAAATATAAGAGGATTTCGTTTGAAAAATCAAAGAGAAAACGAAAATCAACAAAGGGCACTGAAGACAATAGCAACCTTGTGAAGTCTGAATGA

Coding sequence (CDS)

ATGCTAGGCTTGCTTGAAGAGAAAGAGAGGGTACTCGTAAAGTACAAATACCTTTTTGATGAGAAGGAAGGACCCATGAAGAAATATAAGAGGATTTCGTTTGAAAAATCAAAGAGAAAACGAAAATCAACAAAGGGCACTGAAGACAATAGCAACCTTGTGAAGTCTGAATGA

Protein sequence

MLGLLEEKERVLVKYKYLFDEKEGPMKKYKRISFEKSKRKRKSTKGTEDNSNLVKSE*

Homology

[Close]

BLAST of Csa7G056510 vs. TrEMBL
Match: A0A0A0K5V0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G056510 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.7e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1


Query: 1  MLGLLEEKERVLVKYKYLFDEKEGPMKKYKRISFEKSKRKRKSTKGTEDNSNLVKSE 58
          MLGLLEEKERVLVKYKYLFDEKEGPMKKYKRISFEKSKRKRKSTKGTEDNSNLVKSE
Sbjct: 1  MLGLLEEKERVLVKYKYLFDEKEGPMKKYKRISFEKSKRKRKSTKGTEDNSNLVKSE 57

[Close]

BLAST of Csa7G056510 vs. NCBI nr
Match: gi|778724238|ref|XP_011658763.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 3.9e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1


Query: 1   MLGLLEEKERVLVKYKYLFDEKEGPMKKYKRISFEKSKRKRKSTKGTEDNSNLVKSE 58
           MLGLLEEKERVLVKYKYLFDEKEGPMKKYKRISFEKSKRKRKSTKGTEDNSNLVKSE
Sbjct: 246 MLGLLEEKERVLVKYKYLFDEKEGPMKKYKRISFEKSKRKRKSTKGTEDNSNLVKSE 302

[Close]

BLAST of Csa7G056510 vs. NCBI nr
Match: gi|700188439|gb|KGN43672.1| (hypothetical protein Csa_7G056510 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 3.9e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1


Query: 1  MLGLLEEKERVLVKYKYLFDEKEGPMKKYKRISFEKSKRKRKSTKGTEDNSNLVKSE 58
          MLGLLEEKERVLVKYKYLFDEKEGPMKKYKRISFEKSKRKRKSTKGTEDNSNLVKSE
Sbjct: 1  MLGLLEEKERVLVKYKYLFDEKEGPMKKYKRISFEKSKRKRKSTKGTEDNSNLVKSE 57

[Close]

BLAST of Csa7G056510 vs. NCBI nr
Match: gi|778724244|ref|XP_011658764.1| (PREDICTED: uncharacterized protein LOC101214939 isoform X2 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 3.9e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1


Query: 1   MLGLLEEKERVLVKYKYLFDEKEGPMKKYKRISFEKSKRKRKSTKGTEDNSNLVKSE 58
           MLGLLEEKERVLVKYKYLFDEKEGPMKKYKRISFEKSKRKRKSTKGTEDNSNLVKSE
Sbjct: 175 MLGLLEEKERVLVKYKYLFDEKEGPMKKYKRISFEKSKRKRKSTKGTEDNSNLVKSE 231

[Close]

BLAST of Csa7G056510 vs. NCBI nr
Match: gi|659110487|ref|XP_008455250.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic [Cucumis melo])

HSP 1 Score: 104.0 bits (258), Expect = 9.1e-20
Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 1


Query: 1   MLGLLEEKERVLVKYKYLFDEKEGPMKKYKRISFEKSKRKRKSTKGTEDNSNLVKSE 58
           MLGLLEEKERVLVKYKYLFDEK+  MKKYKR+SFEK KRKRKSTKG+EDNSNLVKSE
Sbjct: 246 MLGLLEEKERVLVKYKYLFDEKQESMKKYKRVSFEKPKRKRKSTKGSEDNSNLVKSE 302

The following BLAST results are available for this feature:

BLAST of Csa7G056510 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5V0_CUCSA	2.7e-23	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G056510 PE=4 SV=1	[more]

BLAST of Csa7G056510 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778724238\|ref\|XP_011658763.1\|	3.9e-23	100.00	PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic ...	[more]
gi\|700188439\|gb\|KGN43672.1\|	3.9e-23	100.00	hypothetical protein Csa_7G056510 [Cucumis sativus]	[more]
gi\|778724244\|ref\|XP_011658764.1\|	3.9e-23	100.00	PREDICTED: uncharacterized protein LOC101214939 isoform X2 [Cucumis sativus]	[more]
gi\|659110487\|ref\|XP_008455250.1\|	9.1e-20	89.47	PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU144665	cucumber EST collection version 3.0	transcribed_cluster
CU151382	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G056510.1	Csa7G056510.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU144665	CU144665	transcribed_cluster
CU151382	CU151382	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa7G056510	MELO3C028588.2	Melon (DHL92) v3.6.1	cumedB509
Csa7G056510	CSPI07G05170	Wild cucumber (PI 183967)	cpicuB354
Csa7G056510	Cucsa.345850	Cucumber (Gy14) v1	cgycuB486
Csa7G056510	Carg24583	Silver-seed gourd	carcuB0666

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G056510	Wax gourd	cuwgoB661
Csa7G056510	Cucurbita maxima (Rimu)	cmacuB146
Csa7G056510	Cucurbita maxima (Rimu)	cmacuB532
Csa7G056510	Cucurbita maxima (Rimu)	cmacuB527
Csa7G056510	Cucurbita moschata (Rifu)	cmocuB138
Csa7G056510	Cucurbita moschata (Rifu)	cmocuB518
Csa7G056510	Cucurbita moschata (Rifu)	cmocuB523
Csa7G056510	Melon (DHL92) v3.5.1	cumeB530
Csa7G056510	Watermelon (Charleston Gray)	cuwcgB528
Csa7G056510	Watermelon (97103) v1	cuwmB562
Csa7G056510	Cucurbita pepo (Zucchini)	cpecuB261
Csa7G056510	Cucurbita pepo (Zucchini)	cpecuB695
Csa7G056510	Bottle gourd (USVL1VR-Ls)	culsiB500
Csa7G056510	Bottle gourd (USVL1VR-Ls)	culsiB522
Csa7G056510	Cucumber (Gy14) v2	cgybcuB324
Csa7G056510	Silver-seed gourd	carcuB0753
Csa7G056510	Watermelon (97103) v2	cuwmbB574