CmoCh19G003090 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh19G003090
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Pentatricopeptide repeat (PPR) superfamily protein
Location	Cmo_Chr19 : 2301762 .. 2313897 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGAGCGTTTTGCCTCGTTACCAGTCGGGACTGTGGCGGTACGACATTTGAAATCAGGGTTTTGCTCTACCATGCTCATCCGGAGGTTTCATCGAGCAGCGACATGGGCGACGCCTCTGTTGCGAGACACAACTGTAAGTTTTCGAACTTGTTTTTCTCTTCGTTTGTCTTCTCGAATCTTTGAATGCTTGGATTTCCTGTTTTATGGTTTATCTGTTCGTTAATTGTCTTCATATGCATTACCATTTTCTGATTGAATCGGAAACGAAGTTCTTAGTTTCTCTTTATTTCTGCTTATATTATGATTATTTTTTATGTATTCAACAAACGGCTAATGGAAGGAAGAACTAGGTACCCTTTTTTTAACTTTCCGTATTGCGATTCTTGCATCAGAATTTTTTGGATTACAATCATCTGTTAGTTCTCCTTTGGTCCTGTTCTGCTTAATTCTCTGTTTTGTGTTATTTGTGAAATAATGAACTGTGGTTAAAAGCTCTCCCCATCACTTATTTCTTATTTTTCTATAGTAGGCAATCCAGGATTTACCCTGAACTATGCCTTTGTTGGTCTAGTTTGATTTTGGAACGTCAAGACATTGGTTGGATATGTTTATAGAAGAATTGCGCATTAACTTCCTGTATACTATATTAACGTACGTTAACTTGTTTCAAACTTCTTTTAAGGAATCTCAATTTATCAATATATGAGCACACAGGTAGGACAAATCATGGAGCTTGGAGTCAACAAGCTGCAAATTGGGAACTCTTGTTACTGCACAATGTTACAAAATCAAATGTCTAAACGTTTTGGTGATAAAGATATGACAGATAAGGTATCTGAGATTAAAAGAAAATTGTTCATGCATAGAAAGTATGACGTATTCTTTAGTTTTTTGATGCTGCAACAGAGTAAAATTAGTTTTGTTGATATTTTAAAGGTTAACCTTTTCTTTTCTTCTTTTGGTATAACTATCTTAGCTCTCTCTATTTATATTTCACTATTTGGCGGCAGAAATGATATTAAGGTTGATGAATTATATTTTATTGAAGGGTTTGAAAAAGGAAGAGAGTCCTATTATCTTTGTCACAATTAGGGTTTAGTGCTGGGTCCTTACTTCTCAAGTTTTTATGCTCTTGAATCTTGTAGTTGTCAGTTTCTTCTACCATTGTGCATTATATCTTGACTTACAAAATGTACTTTCTTTCTTTATTTTCGTTTGTTTCTGTTATCCTGTCAAACATTCCACATATTTGATATGCCTCGAGTACTAAAATAGAGTAATAATGATTATGGAAATTACCCTAAATGTATTTGCTGGTAATTTAGTTAACTCTTGAATTGTCTACCAATGGTCCAGGATGTTAACAATAGTAAACCTTTGTACCAGACTTCAGAGCGAAATATTGGAGACATTAGAAAGCACCAAATTGGGGAAAACGTTTCACGGAAGGACAAAATTGACTTTCTTGTAAATACTGTAAGTATCAATGGGAAAATATCTTCCCTCTTTCTTCTTTCTTTTTTTTGGGGGGTGGGGGTGGTTGGTAGTCAATTAAGTCTTCTCAAAATCAGGTATAGGTGTATTTTCATTTGATGGGTAGCTATTATATTTTCTGATTCCAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAGAAAAGAAAAAAGAAAGACACTTCAAATAATCAAATGCTAAAACTGATTGCTTTGATAATAGTTGCATAAACCAAACACTAATTGACGAGTCTTTTTGTTTCCTATCAAAAGTAATATCAAGATGCCTTTCGCAAGTCCTATTTCCTTCTGTCATTTAATTTATTTACTTCTATAATATATATTTCTTTTTATTCACATTGGGTAAGAAAGCATCAAGAAGTGGTAAACATGAATTTCAGCGAGCTATGATTGTATCTAGATTGTTTGCTCATAACAACTAGAGGGATATTAAAGGTGCTTTGGAAGATCATTTTGAAGTCTCTGTTTTGTTTAATTCTTTCATGGCTGACAAGACTTTACTCAAACTTGATGATGGTAACTCTCCATTGGTTTTAAATCCCGCCGGAAATTGGAAGCTCTGTTGTGATTTTCATTTGCTTATCAAGAAGTGGTCTAGAGATAAGCACGCTCATCTGAATTTCATTGAAAGGTATGGTGGGTGGATCAGAATCAAGAACTTACCTCAACTTATTGGGAACACAATATCTTTGATGCTGTTAAAAATTACTAACACTTAGTATATTGGATTTTACTAAGAGGGACATGGAAGTCAAAAGGCATTTGTGTGAGTTTTTCCTGACTGCTACTGGAATTAATGATAGGAACAGAGGAAATGTGTTTCTTAGATTAGGAGGTGCATTTTTTGATGTCCCAGGGAATGGAGTTTGTATGAGTCTCAATTTTTAGTCATAAAACTTTGAATAAGCTTAAGTGATATTGTAGTTTACCTCAGTGATGCTCAGGGTAACAAAATGGCCAAGGTACTCGGAGGTAGTAGGAACCCGAGATGAAGAGATAATTTTAGTGATAACTACATCATTCCCAATAGTTGGCAACATATTAAACGTTTCATTTCGAGCTTTAGGGCCATTTAAAGACATGGAGTTTCTGAGATATTCAGAAATGGATTTGTACATTCCTCAGATATGGAAGCTTGCTGATCTGTTGACTGAAATAGGGAGTTGAAGGCATTTGCATAAAAATCTTCGAACTATTAGATCATCCAATGTATAGTATAGTAATCGGGCTGAATATCTAATTCAAATTGACATCTGACTCATCATCTGAATCATCGAAAGGAACTGCATTGGAAGATGAATGATCATTCGATGACTTTAAAATATCATGAGAAAATTTGGAACTACCTAGACCATTGTCGTATTCAATCAATACTGATGGGGTATTTTTCTTCAATCTTCTTCCTGGGATAACCTCCTGCTTTTCTAAATGAATCAAAGGGATTGAAGATATTTTCAAAGAACATTTGGTCCGAAGGTACAATATCTTCATTGAATGTGAATGAGATGGGTCTGCAGAATACAAAGGGATTGAAGATTTTTTCCCTGCATAGAATTTTGAATAGGTTACATTAAAACAATCATTTACTTTCTTATTGCTCAAAATTTCTAAAGATTCAAAGACAGTAGGTACTCATCAGTTTGTGCATTGTTTGATAGACTTCCTCATTTTATGCCTTCGTTACATGGGAAGATTGGAGGATTGGTCAGGTTGATCTATTAAAAGTGGGCCCACAGGAATTTCCTCAAGAGGCGCGAGTAAAGGCTCCAAGGGATTCGATAAAGAGCAATTGAACGTATCCTTCTCATTTAGACCTTGATTATAAAATGCAACATCCCCCCGACTCATTTAAGACTATCTTCTAACTCATTGAAGGCAGCCTTCACATGAAGATCACTATCATTAAATGCAACATTCCCTGACTCATTTAAAACCGCATTTTCTGATCCAACTAACCTATGAACTGGTGAGTGTAAAATTTCTTCCTTGGTCATGGTGGTGACGGCTTTATCTTCCATAAATTGCTCTATCCTATTTAAATCCAATGAATTTGAAAAGTCATTTAAAGATAATTCACGGTTGATGATATTAGGAGATTCTAAAGAAGAAGCATCCGAAGGGAAATGCTTCCTTTTTTTCATATCCTTGATCACAATGGTTGCATGAAAGAAAACCACTTAGGGTTTTCTTAACTTCAATACAAGCTCGTTGAAATCAATCAAATTTAGAATATTAGAAGAAATGCGAATAAGGCCCCTGAAATACTCTCCAATTGCTTCAATCGTACTTCGTCTCCAGTTTATTCAAGGTAAGTTGTTGATAGAAATCCAACCTCCATACCCTTCAATAAGCTCCGGATGAGAGTGCTTCTTTTGTGACAGTTTTTCAATTTTCAATAGCAAGTTTCCATAAAATCTCCATTTTCCATCACTAATGTTTACTAATGTTTCCTTGGTTTCCTTCCATTTATTATGAACAAGCAATTTGGAGACAACAAAACGCTCACCGAAATTTTATGTATCACTTCTTTTGCTTCTCTCACCCAAAATGATGGTTCAATCAAGTTGTCAATACAAGAAATCCCTGCAAGCTGATTACTCTTTGGATTATTCCTCTGTTTCATCTCCACAAAGTGGTTATTCTTCAGATTATTCCTCTAATTTGACTTCACAACCTCTGCAGATCTTCTGGTAAATGACTTTTCATTGATCTCTATCTTCATATAATGATCTTCGGGCATTGCCATATTAGGTAGTTGCATTGCGGGCTCACTGTTTTTACTCATGTATCTTTAGGAAATCCCATAGCAATTCCCAGAAAATGACCCATCCATGTTTGGCAAAACCAGCAGACCTTGAGCAATTTCCTTCCTCTTGAAGGTGGCCAAACCACACATCCAATGTGCTAACCTTGGCTTTTCAGATTATTGCTAATGGAAAACCAAGAGGAGATTTATCTAGTTGTTATTCACGTCTTTTACAAAACACATTTTATCTTCAGACTAAATGAAAAAAACGTGTTATGAACACAACTCCTTACCTCCATAATTCAAAATCAACCTAATTATCATGGAGGAAGGTGATTATGAGTATTCATGGAAGATTTTCTTTAGAATCGCTTAAGGATGGTCGTCATGCTTCAAGCCTTAGAAGTCCTTGGTCTAATGTTTCTAAGATCTAGAAAAAGGTTGAATCTTATGTCTCTTTTAAACTTGGAAAAGGTAATCAAATCTTTTTTTGGCAGGACAAAGAGACTGGAGGTATTTCTTTGCAGCATTTTCTTCCTCAATTTTTTGTTCTCTCTTCACCTCCTGATGGTTCTGTTTTTTTAGTTTTGGGATTCTATTCATCTTTCTTGATCTTTAATCTTTCAAAGGTTACTGAAAGACGATGTGATATTGGCTTTTCAATCGTTATTGGGTCCCCTGGATACTTCAATGGTAGATTCTTCTGAGGATTCAAGATCATGGTTATTAGAGCTCTCTGGCTCTTTCTCGGTGAAGTATATCGAGAGAATTAGCTTATGCTACTCCTTTACAGCCAAACCTATTCAAAATAATATGGAAATCTCGTAGTCCAAAGCGTATTAATATTCTGTTGTGGACCATTCCTTTGTAGCAATCACTATTGATTGCCCAGGATGTCCTTGCTCTATATTCTGTTGTGGACCATTCCTTTGTAGCAATCACTATTGATTGCCTAGGATGTATCACCTTTATATTCTCTAAACTTCTCTGGGTATGTGTCACTTTCATACACAACGGTCATGCATATATCACTTTCATGCATATAGGACCCCAAAAAAGTATTGAAGAGGTGAGAAAATGTATAATGATCGCTCACAGGCATGAGATACCACATATATAAAACATTAGTTCTTAAACATGATGCAACATAGAGATTATTTCGTACATAAACGTTCTCATCAAATTTAGCTAGTATCCATAACATCAATCACATCATGACTTGTCATTTCAGGAAAATACATAGTTTAGCATACATCAATCAATCATCTGACCTAGCCTTAAAGCGGTTTAGCATACATCAATCAATCATCTGACCTAGCCTTAAAGCATTCCAAAAGGAAAATCACATTGGCTACACAACCAAAAACAAAAGAGAGGAATATTCCCTATTATGAAGATGTTTTGCCCAACCTAAAAGAAAATTTCGTAGGTAAATCAATAGCTCAAGGATATGAATATTAGACTTAAATCTTGAAAGCTACCATTTACCCAATTGGTTCTTTTCTCAAAGTCGCCCTTAAACCGTATTCAAACAGTCTAAATCTATTCCAACACTACAACAAAAGATGCTGATTGCCACGACTGGCTGTCTACGTGTGGGACGTGTGGGTTGATGCTGATGCCTATTCATTGGAGAAGAAAACGATCCCCCCGAGAGGGGGAAAAGAGATGGAGATAGAAAGAGCCTTTCTAATTTTTGTTTATGACGTCCTAAATGGCTCTTTTTCCTTTCCCATTATTTTTCCTTTTCTACAATCTAGTTAAAAAATTCTAATTAACCCCAAATGAACTTCAAATATAAGAAAAAATCTTTGGGAATACACTTGGGCTCTTAAAATTGAAATACAAAAATTCAATGGATGATTAAATCCTCAAAGTTATGAATTTGAGACGATTAAAAAAAATCTCTCATTCAGAAATTAAATAAATTGATTGTCTCAACTTAACCCACTAAATTTAACTTAACCAAATTAGATCCCAAGAATTCCAATATATCCAATCGAATTCAAACTAATAACCTAAAGATTAAAATAATCTTATCCAAAAATGTAGGCATTACGGATCATGTTTCTTATAATATCTTTATCTTCAATATTAAATCTTGATGTATTTTCTAAAATAATTATACGACCTTGGAGGTTAATGAGTTCTGTAAACGTTGCAGCTTATGGATCTGAGAGATAGTAAGGAGGCTGTTTATGGTGCTCTTGATGCCTGGGTTGCATGGGAACAAGACTTTCCAATAGCATCCCTTAAGCATGCATTGGCTGTCCTTGAGAAAGAAAACCAGTGGCATAGAGTTGTACAGGTATGAGTTGTACCAGCCATTCTTTATCTACTCTCTTTTCCTTTTACCCACTCTTCCCACTTTCATGTTGAATGGAAATTAGTCTTCTCACTAGCCAAAAGGTGTGAAGGACATTAAATTTTTGGGGCAGGTATGTGAGCATGCAATTAGATGCAAATCCACAATATTACTGCTATATTCCCTTCTCGTGTAAACTGCAGAATTTTAGAGCATTGGCTGTGTGATGCAGTATATAATGGGCTATTTTACCAATTCTGTTTTGTGTAAAGTAAAATCTAAGAGGATGCACAAATAAACCCTAGTTTAAGGAAGAGTAAATAGCAAAGACAGTAAGTAGTGGGCTTTGAATGGCTAAGAATCTGTAAGTTACACTATTTAACACTAATATACAGCCTAAGAAGCACCAACACTCCCATTTAGGTAATGCATTTGCTTCGAACACTCCGATACTTGTTGGACACAGACAGTTACCTTGTAACATATTAAGTGATAATTTTTGTACAAAATGAATTAGTCCGATAATTTTTGTTTTTTGTTTTTTTGATAAGAAACAATTTCACTGGTTAATGAAATTTACAAAAAGAATAGATAATCCATGAGGATTACAAAAAGCTTTTCCAATTGGTCAATAGGGAATTGTAACTAGGGAGCCAGCAAAGTGATTATACACTTTACACCAAGACATAGAATAATAAATGAAGAGATCGAAGAACACTTCAAATGGATGAATGTTCTTTATTTAGAAAAATCCTTTGGTTTCTCTCCTTCCATAGAACCCCAAGGGAAGCCTTGTTTATGTGCATCCACAGTAGAGCTCTTGCTTTTTTAAAGGGGTCACGCAACATAACATTGGTGAGAATATCCTTTGCATCTTTAGGAATTGTCATATACCATCCAAAAGCCTTGAGAATTCTGTTCCAAAATTTCAAAGCAAAAGGGCAGTGTATGAATAAATGGTTCTGTGTTTCATCTTGGCCTTGCCTAAAGGATACCAGCTTGGGGAAGTTTCCAAGTATGGCATTCCCGTTTGGAGGTTGTCTTTGGTAGTGATGGTTCTGTGAGATAATTCCCATAGGAAAATTTTGGGTAACTATCGTCTAGATAATTCTAGCCAATGCCGTCTCCAAAAGGTGAGTTGATTATCCTATATTTAATAACAAAGATCTTGTGCATAAGGGACCATTTGGATTAGGTAACCATCTCTATGAATCCTCCCTCTTTGAGAGAACAATAGGTGCAAGGTCAGGACTGAGAGAAGACTGAGATCAGCCACTCTCAGGCTTCCTCGTCCTTCTAATTTCTGCCAAGTTGCAAGTCCCAGAAGCTGTTATCAGTGTTCCATACCCATAACAATCCAAGTCCACTGCTAGCAGATTTGTCCTCTTTGGGCTTTCCTTTTTGGGCTTACCCATACGATTTTTAAAAGGCGTCTGCTTGGGAGAGGATTCCACACCCTTATAAAGGATGTTTCGTTCTCCTCCCCAACCGACGTGGGATCTTACAATCCACCCCCCCTTCAGGGTCCAGCGTCCTCGCTAGCACTCCTTCCTTTCTCCAATCATGTGGGACTCCCACCAAATCCACCCCCCTTTCAGGGCCCAGCGTCCTTACTGGCACACCATCTCGTGTTTACTCCCCTTTGGGGAACAACCTCTGATTTGATAAGGAAATCACTACAAGGGGAGTAAGATTCGGATTACCTTGTTGATCGAATATCTCAAGACAAGAACATTGTTTGAGATTCAAATCACTCCACAAGCAAGATCGATCATGTCTAGCTTGAATGATTCTTGTTGATCAAATATCTCAAATACTTGTTTGAGATTCGAATCACTCCACAAGCAAGATTGAACATGTCGAGCTTGAATGATTCTACATGCAACCTAAACTACATAGAATTGCCAAGAAACTTAGCCATTGGCTAAAGAAAAGCACAAATGCTTCTTTTAATATATTTTCCAAGTCTACCTACAAATACAACATACAAGGCTTTATATAGCCTAAAAAATGAAACTATTAAAGGCGTGTAACATTCATACTTAATGACCATAATTAGCCATTGTGTAAATGTAACCTAAAGTAAATAAAATGTCTTAAAATACAATAACTCTAAATTGTAACCCACCCAAAATTTACAACAATCAAACTTTATTCTTCTTCAATGTAGCATGAATTGAAACATCTTTTGATAATTTTGACAACCTTTTCTTTACATCTTCATTGAAGTATATTGTATGATTGATGTCTCTTGGTTCATATCACTCCTCGCTAGCACATCACCTGGTGTCTGGTTCTGATACCATTTGTAATAGCCCAAACCTACTGCTAGCAGATATTGTCCTCTTTGGGCTTTCCCTTTCGGGCTTACCCTCAAGTTTTTTAAAACGTGTCTGTTAGGGAGAGGTTTCCACACCCTTATAAAGAGTGTTTCGTTCTCCTCCCCAACCGATGTGGGATCTTACAATACCTCTCTAATGGTAGCCTTTTTGCAATGAGGAATTCTGTAAAGTTGGGGGGTAATGAAGGCCATTGAAGTGTTTCCACCCAAGGATCAGTCCAGAAAAGTGTTGTGGCTCCACCACCCACTTGGTAGCATATTCCGATGGTGATAAGATCTTGGTGCTTGATATTGAACATCCATTGGTAGAGAAGATACATACCTACGTAATGTTGTTTACCAAGCTATATCTTGGTGTAAACTGTCTAATATTTTTACTTTCTATAGTTATACCACCCTCATTGTAAATAGGGAAGGTCTTTTGTTAACCCTACGGATTATACATCCCTTTTGTGAGTTTCAATCATCAATGAAATTATCTCTTAAAAAAAAAAAAACTTCCAAGGACTTCCTTGGTTATCTTGACTGGAAAGGAATGGGCGTCTCTACAAAAAAAGACCTATGTTTTTCAAATCTTTTTTTGATAATTTATTTTTTACTGCCCTCTCTTGGTGTAAACTCTCCCCACTCTTCAAAAATCATAGTCTCACATCGGTTGTTCAAAATGTTTTTTTGAATTTCCATGGCTCACTGCCCTTTTGTAATTTTATTTCACAGTCCATGAAATGATTACCTCACTGTTTCTCACAAAAAAAAAAAAAGCTTATTGATGTAAATGCATAAATTTATTGATTTTAAATTCTCTGAATTCGTGGTTTCGTGTTTGTATCTTTGCTTCTTAGTATCCAACTCATAACATTTCTAAAGAATATATGTGAATCATGTTGAGTTTCTTGTTAGAACAATAGTCAAGTCCAACGGTACCTAGCTTGTTACTATTGAATTTAGACAATGAAATGGGTATATGTATAGGTTATAGAAACAAATGCTGTTAGATTCATGCAGATGTCTTGCAGGTAATCAAATGGATGTTAAGCAAGGGGCAAGGAACCACAATGAATGTCTATGGGCAGTTAATACGGGCTTTAGACATGGACCATCGAGCGGAAGAAGCACATAAGTTTTGGGTCATGAAAATTGGTTCGGATCTACATTCAGTTCCTTGGCAATTGTGCAGAAGCATGATATCAATATACTACCGAAACAAAATGCTAGAAGATCTTGTGAAGGTATAATTCTCTCTTTCATTTAGTTAATGTAATGCTAGTGCCTTCTGGAAATGGCTTTTTGTTTGGAATATTGTTTTTTTCTTTTCCCCATTTTCCCATTAAAGTATTTTGATGATTCTCTTCTTTTGGGTTTGTACCTAGAGTATACTTCTATACTTGATTTTGATATCTCCACATAGCCCACGTGATTAGAGCATATCAAGTGTAACGATTCAGGTTCACCGCTAGTAGATATTGTCTTCTTTGGGCTTTTCCTTTCGGGCTTCCCCCTAATGTTTTTAAAACGCGTCTGCTAGAGAGAGGTTCTACACCCTTATAAAGGGTGTTTCGTTCTCTTCCCCAACCGATGTGGGATCTCACAATCCACCCCCCTTCAGGGCCCAGCGTCCTCGTTGGCACTCGTTCCTTTCTCCAATCGAGGTGGGACCCCACCAAATCCATCCCCCTTCGGGGCCTAGTGTCCTTACTGCACACTGCCTCGTGTCTACCGGAGAGGTTTCCACACCTTATAAAGGGTGTTTTGTTCTCCCCAACATCAAGTTTATGTTTCTTTTTACTAGGCTCAGATATTTTGTTGGCCTTCTCAAACAAAACCTTAGTTTTGTTGTTAAGATCTGAACTAGAGTTCCCTTTCTCAAGTGGTGAATGCTAAATGATTATCATATATTCCTATGGCCAGCTGGATAAAAGCATTAAGAACATCGTAATGTAGATCAAATTTGGAAATAAACAAAGGGCCTTAATAGCATACGAGCATAACAATCTAATGGCTTGGCTACACTACATGGTTCCTCTGGTTGAGAGACATTTTGATCCCTTTTAATTATTTTTAGCTCCCCTTGTCCTCTTTTTGATGTTATTAAAGTTTTTGAATTGGCATCTGGTTTGAATATTAATTATGGCAAGAGTGAACTGTTGGGGATAAACATAAGTCATAACACCTGTGGCAAGAACAATGGATAGAATTCTTTAAGATTTTCTTTGGAAAGGCTCGGAAGGTGATGCTGGTTGGCCTAATGTCAATTGGGAGCAGATTCAACTTCCCAAACTCTTGGACGGCCTTTGTGTTGGAGATCCTTTTAGTAATCCTTTGTACTGGGTTCACTTATCAATGAAATTTGTTACACAGATTGATAATATTTATATATATTGATGCAAAATAGTCGATGTGTCGATGAATTTTAAATTTTTGCGGGTCGGATTGCGTTATCCCCGAGTCTCTGTTATGCTAACCTTGCCTTTTGCCTTGTGTAATGTAAAGCTTTTTAAGAATCTTGAAGCTTTTGGGCGTAAACCTCCAGAAAAATCAATAGTGCAAAGGGTAGCAGATGCTTGTGAGATGCTGGGCTTGGTTGAAGAGAAAGAGAGGGTGCTAGTGAAGTATAATTACCTTTTTACCGATGAGAAGAAAGGGTCCATCAAGAAATATAAGGGAAAAAGAAAATCGACCAAGGGCAATCAAGACAATAGCGACCTTATGAAGAAGGCTCAATGAGTGAAATTAAGAGTTTCTAAATTTATTTTTAATTTTATATCTAATAGTCATTGACAAGTTTGTATATAATTGACTGATC

mRNA sequence

TTGAGCGTTTTGCCTCGTTACCAGTCGGGACTGTGGCGGTACGACATTTGAAATCAGGGTTTTGCTCTACCATGCTCATCCGGAGGTTTCATCGAGCAGCGACATGGGCGACGCCTCTGTTGCGAGACACAACTGTAGGACAAATCATGGAGCTTGGAGTCAACAAGCTGCAAATTGGGAACTCTTGTTACTGCACAATGTTACAAAATCAAATGTCTAAACGTTTTGGTGATAAAGATATGACAGATAAGGATGTTAACAATAGTAAACCTTTGTACCAGACTTCAGAGCGAAATATTGGAGACATTAGAAAGCACCAAATTGGGGAAAACGTTTCACGGAAGGACAAAATTGACTTTCTTGTAAATACTCTTATGGATCTGAGAGATAGTAAGGAGGCTGTTTATGGTGCTCTTGATGCCTGGGTTGCATGGGAACAAGACTTTCCAATAGCATCCCTTAAGCATGCATTGGCTGTCCTTGAGAAAGAAAACCAGTGGCATAGAGTTGTACAGGTAATCAAATGGATGTTAAGCAAGGGGCAAGGAACCACAATGAATGTCTATGGGCAGTTAATACGGGCTTTAGACATGGACCATCGAGCGGAAGAAGCACATAAGTTTTGGGTCATGAAAATTGGTTCGGATCTACATTCAGTTCCTTGGCAATTGTGCAGAAGCATGATATCAATATACTACCGAAACAAAATGCTAGAAGATCTTGTGAAGCTTTTTAAGAATCTTGAAGCTTTTGGGCGTAAACCTCCAGAAAAATCAATAGTGCAAAGGGTAGCAGATGCTTGTGAGATGCTGGGCTTGGTTGAAGAGAAAGAGAGGGTGCTAGTGAAGTATAATTACCTTTTTACCGATGAGAAGAAAGGGTCCATCAAGAAATATAAGGGAAAAAGAAAATCGACCAAGGGCAATCAAGACAATAGCGACCTTATGAAGAAGGCTCAATGAGTGAAATTAAGAGTTTCTAAATTTATTTTTAATTTTATATCTAATAGTCATTGACAAGTTTGTATATAATTGACTGATC

Coding sequence (CDS)

ATGCTCATCCGGAGGTTTCATCGAGCAGCGACATGGGCGACGCCTCTGTTGCGAGACACAACTGTAGGACAAATCATGGAGCTTGGAGTCAACAAGCTGCAAATTGGGAACTCTTGTTACTGCACAATGTTACAAAATCAAATGTCTAAACGTTTTGGTGATAAAGATATGACAGATAAGGATGTTAACAATAGTAAACCTTTGTACCAGACTTCAGAGCGAAATATTGGAGACATTAGAAAGCACCAAATTGGGGAAAACGTTTCACGGAAGGACAAAATTGACTTTCTTGTAAATACTCTTATGGATCTGAGAGATAGTAAGGAGGCTGTTTATGGTGCTCTTGATGCCTGGGTTGCATGGGAACAAGACTTTCCAATAGCATCCCTTAAGCATGCATTGGCTGTCCTTGAGAAAGAAAACCAGTGGCATAGAGTTGTACAGGTAATCAAATGGATGTTAAGCAAGGGGCAAGGAACCACAATGAATGTCTATGGGCAGTTAATACGGGCTTTAGACATGGACCATCGAGCGGAAGAAGCACATAAGTTTTGGGTCATGAAAATTGGTTCGGATCTACATTCAGTTCCTTGGCAATTGTGCAGAAGCATGATATCAATATACTACCGAAACAAAATGCTAGAAGATCTTGTGAAGCTTTTTAAGAATCTTGAAGCTTTTGGGCGTAAACCTCCAGAAAAATCAATAGTGCAAAGGGTAGCAGATGCTTGTGAGATGCTGGGCTTGGTTGAAGAGAAAGAGAGGGTGCTAGTGAAGTATAATTACCTTTTTACCGATGAGAAGAAAGGGTCCATCAAGAAATATAAGGGAAAAAGAAAATCGACCAAGGGCAATCAAGACAATAGCGACCTTATGAAGAAGGCTCAATGA

Homology

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BLAST of CmoCh19G003090 vs. Swiss-Prot
Match: PP322_ARATH (Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidopsis thaliana GN=At4g18975 PE=2 SV=2)

HSP 1 Score: 146.0 bits (367), Expect = 6.6e-34
Identity = 76/183 (41.53%), Postives = 112/183 (61.20%), Query Frame = 1


Query: 97  LVNTLMDLRDSKEAVYGALDAWVAWEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSK 156
           LV  L  L + KEAVYGAL+ WVAWE +FPI +   AL +L K +QWHRV+Q+ KWMLSK
Sbjct: 101 LVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKRSQWHRVIQLAKWMLSK 160

Query: 157 GQGTTMNVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLED 216
           GQG TM  Y  L+ A DMD RA+EA   W M + +   S+P +L   MI++Y  + + + 
Sbjct: 161 GQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRLFARMIALYAHHDLHDK 220

Query: 217 LVKLFKNLEAFGRKPPEKSIVQRVADACEMLGLVEEKE----RVLVKYNYLFTDEKKGSI 276
           ++++F ++E     P E S  +RVA A   L   E ++    R L +Y Y++ + ++  +
Sbjct: 221 VIEVFADMEELKVSPDEDS-ARRVARAFRELNQEENRKLILRRYLSEYKYIYFNGERVRV 280

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BLAST of CmoCh19G003090 vs. Swiss-Prot
Match: PP332_ARATH (Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana GN=EMB1417 PE=2 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 6.4e-29
Identity = 71/192 (36.98%), Postives = 107/192 (55.73%), Query Frame = 1


Query: 97  LVNTLMDLRDSKEAVYGALDAWVAWEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSK 156
           ++  +  L + KE VYGALD+++AWE +FP+  +K AL +LE E +W +++QV KWMLSK
Sbjct: 61  MIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTKWMLSK 120

Query: 157 GQGTTMNVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLED 216
           GQG TM  Y  L+ AL  D+R +EA + W       L   P +    MISIYY+  M + 
Sbjct: 121 GQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRDMHQK 180

Query: 217 LVKLFKNLEAFGRKPPEKSIVQRVADACEMLGLVEEKERVLVKYNYLFTDEKKGSIKKYK 276
           L ++F ++E  G K P  +IV  V      L + ++ E+++ KY        +   +  K
Sbjct: 181 LFEVFADMEELGVK-PNVAIVSMVGKVFVKLEMKDKYEKLMKKY-----PPPQWEFRYIK 240

Query: 277 GKRKSTKGNQDN 289
           G+R   K  Q N
Sbjct: 241 GRRVKVKAKQLN 246

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BLAST of CmoCh19G003090 vs. TrEMBL
Match: A0A0A0K3W9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G057510 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 2.3e-102
Identity = 180/220 (81.82%), Postives = 198/220 (90.00%), Query Frame = 1


Query: 1   MLIRRFHRAATWATPLLRDTTVGQIMELGVNKLQIGNSCYCTMLQNQMSKRFGDKDMTDK 60
           MLIRR HRAA WATPLLR  TVGQ MELGV++LQ+G+SCYCT +Q+QM ++  DKD  DK
Sbjct: 1   MLIRRIHRAAAWATPLLRHPTVGQTMELGVSRLQVGSSCYCTTIQDQMCQQLADKDRKDK 60

Query: 61  DVNNSKPLYQTSERNIGDIRKHQIGENVSRKDKIDFLVNTLMDLRDSKEAVYGALDAWVA 120
           DVN+SK L   SE+NIGDIRKHQIG+N+SRKDKI FLVNTL+DLRDSKEAVYGALDAWVA
Sbjct: 61  DVNSSKALGHISEQNIGDIRKHQIGKNISRKDKIHFLVNTLLDLRDSKEAVYGALDAWVA 120

Query: 121 WEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE 180
           WEQDFPIA LKH LA LEKE QWHR+VQVIKWMLSKGQGTTMNVYGQLIRALDMDHR EE
Sbjct: 121 WEQDFPIAPLKHVLAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRGEE 180

Query: 181 AHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLEDLVKL 221
           AHKFWVMKIGSDLHSVPWQ+CRSM++IYYRNK LEDLVK+
Sbjct: 181 AHKFWVMKIGSDLHSVPWQVCRSMMAIYYRNKRLEDLVKV 220

[Close]

BLAST of CmoCh19G003090 vs. TrEMBL
Match: B9SJZ4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0577750 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 5.6e-88
Identity = 172/274 (62.77%), Postives = 207/274 (75.55%), Query Frame = 1


Query: 12  WATPLLRDTTVGQIMELGVNKLQIGNSCYC-TMLQNQMSKRFGDKDMTDKDVNNSKPLYQ 71
           W +P     T G++ ++GV +LQ  N  Y  TM+Q Q+S R        +D ++ K    
Sbjct: 2   WRSPAFSSLT-GRLSQVGVARLQCSNGRYSSTMVQAQISNR-NTPSPRPEDQDDYKTTCH 61

Query: 72  TSERNIGDIRKHQIGENVSRKDKIDFLVNTLMDLRDSKEAVYGALDAWVAWEQDFPIASL 131
            S ++ G ++K+QIG+NVSRK+KIDFL+ TL+DL+DSKEAVYGALDAWVAWE +FPIASL
Sbjct: 62  NSNQSAGGVQKNQIGKNVSRKEKIDFLLKTLLDLKDSKEAVYGALDAWVAWEHNFPIASL 121

Query: 132 KHALAVLEKENQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEEAHKFWVMKIG 191
           K  L +LEKE QWH+VVQVIKWMLSKGQG TM  YGQLIRALDMDHRA EAH FW+ KIG
Sbjct: 122 KRVLILLEKEQQWHKVVQVIKWMLSKGQGNTMGTYGQLIRALDMDHRANEAHMFWLKKIG 181

Query: 192 SDLHSVPWQLCRSMISIYYRNKMLEDLVKLFKNLEAFGRKPPEKSIVQRVADACEMLGLV 251
            DLHSVPWQLC  MIS+YYRN MLE LVKLFK LEAF RKPP+KSI+Q+VADA EMLG++
Sbjct: 182 LDLHSVPWQLCHRMISVYYRNNMLESLVKLFKGLEAFDRKPPDKSILQKVADAYEMLGML 241

Query: 252 EEKERVLVKYNYLFTDEKKGSIKKYK---GKRKS 282
           EEKERVL KY  LF + +KG  KK +    K+KS
Sbjct: 242 EEKERVLQKYKDLFKETEKGRPKKSRSTLAKKKS 273

[Close]

BLAST of CmoCh19G003090 vs. TrEMBL
Match: F6I4B4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0062g01340 PE=4 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 3.6e-87
Identity = 161/235 (68.51%), Postives = 188/235 (80.00%), Query Frame = 1


Query: 57  MTDKDVNNSKPLYQTSERNIGDIRKHQIGENVSRKDKIDFLVNTLMDLRDSKEAVYGALD 116
           + D+   N++P+Y  S ++   + KHQIGENVSRKDKI+FLV TL+DL+DSKEAVYGALD
Sbjct: 32  LVDEGQCNNQPMYHDSGKDAASVHKHQIGENVSRKDKINFLVTTLLDLKDSKEAVYGALD 91

Query: 117 AWVAWEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDH 176
           AWVAWEQ+FPIASLK  L  LEKE QWHRV+QV+KWMLSKGQGTTM  YGQLIRALDMDH
Sbjct: 92  AWVAWEQNFPIASLKRVLITLEKEQQWHRVIQVVKWMLSKGQGTTMGTYGQLIRALDMDH 151

Query: 177 RAEEAHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLEDLVKLFKNLEAFGRKPPEKSI 236
           RAEEAH+FWV KIG+DLHSVPW LC  MIS+YYRN MLE+LVKLFK LEAF RKP +K +
Sbjct: 152 RAEEAHEFWVKKIGTDLHSVPWHLCHRMISVYYRNNMLENLVKLFKGLEAFDRKPQDKLV 211

Query: 237 VQRVADACEMLGLVEEKERVLVKYNYLFTDEKKGSIKKYK---------GKRKST 283
           V++VADA EMLGL+EEKER+  KY+YLFT+   G  KK K         G+RK T
Sbjct: 212 VKKVADAYEMLGLLEEKERIFEKYDYLFTETVAGKPKKSKKFLSEKKKSGRRKPT 266

[Close]

BLAST of CmoCh19G003090 vs. TrEMBL
Match: A0A067LEC7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24025 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 1.9e-83
Identity = 162/280 (57.86%), Postives = 209/280 (74.64%), Query Frame = 1


Query: 12  WATPLLRDTTVGQIMELGVNKLQIGNSCYCTMLQNQMSKRFGDKD--MTDKDVNNSKPLY 71
           W +P +   +  ++  +G  ++Q  N  Y TMLQ+ + K    +   + +  V++     
Sbjct: 2   WRSPAMSSLS-SRLTGVGAARVQSPNCGYNTMLQDHIYKTNVTRSTFLLENRVDHKAAAC 61

Query: 72  QTSERNIGDIRKHQIGENVSRKDKIDFLVNTLMDLRDSKEAVYGALDAWVAWEQDFPIAS 131
           + S +N+  ++K+QIGENVSRKDKI FL+N  ++L+DSKEAVYGALDAWVAWE+ FPI S
Sbjct: 62  ENSIQNVRGVQKYQIGENVSRKDKISFLMNMFLNLKDSKEAVYGALDAWVAWERQFPIGS 121

Query: 132 LKHALAVLEKENQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEEAHKFWVMKI 191
           ++ AL  LEKE QWHRVVQVIKWMLSKGQG TM  YGQLIRALDMDHRA+EAH FW  KI
Sbjct: 122 IRRALLTLEKEQQWHRVVQVIKWMLSKGQGNTMGTYGQLIRALDMDHRADEAHLFWSKKI 181

Query: 192 GSDLHSVPWQLCRSMISIYYRNKMLEDLVKLFKNLEAFGRKPPEKSIVQRVADACEMLGL 251
           G+DLHSVPW+LC+ M+SIYYRN MLE LVKLFK LEAF RKPPEKSIVQ+VA+A EMLG+
Sbjct: 182 GTDLHSVPWELCKLMLSIYYRNNMLECLVKLFKGLEAFDRKPPEKSIVQKVANAYEMLGM 241

Query: 252 VEEKERVLVKYNYLFTDEKKGSIKKYK-GKRKSTKGNQDN 289
           +EEK+RV  KY +LF++  KG  KK++   +K ++G + N
Sbjct: 242 LEEKDRVEQKYIHLFSETHKGDNKKFRTTSKKKSQGLRQN 280

[Close]

BLAST of CmoCh19G003090 vs. TrEMBL
Match: V4VTA3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021498mg PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 3.2e-83
Identity = 167/253 (66.01%), Postives = 193/253 (76.28%), Query Frame = 1


Query: 37  NSCYCTMLQNQMSKRFGDKDMTDKDVNNSKP---LYQTSERNIGDIRKHQIGENVSRKDK 96
           NS Y +  + Q+S +   K M+   +   +    + Q  ERN    R  +IGENV RKDK
Sbjct: 16  NSIYKSAEKIQISNQIIGKAMSMSSLEGQRTNQSVDQYPERNAASTRNFRIGENVPRKDK 75

Query: 97  IDFLVNTLMDLRDSKEAVYGALDAWVAWEQDFPIASLKHALAVLEKENQWHRVVQVIKWM 156
           I+FLVNTL+DL++SKE VYG LDAWVAWEQ+FP+ SLK AL  LEKE QWHRVVQVIKWM
Sbjct: 76  INFLVNTLLDLKNSKEDVYGTLDAWVAWEQNFPVGSLKKALLALEKEQQWHRVVQVIKWM 135

Query: 157 LSKGQGTTMNVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKM 216
           LSKGQG+TM   GQLIRALDMDHRAEEAHKFW  +IG DLHSVPWQLC+SMI+IYYRN M
Sbjct: 136 LSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNM 195

Query: 217 LEDLVKLFKNLEAFGRKPPEKSIVQRVADACEMLGLVEEKERVLVKYNYLFTDEKKGSIK 276
           LE L+KLFK LEAF RKPPEKSIVQRVADA E+LGL+EEKERVL KY  LFT+++K S K
Sbjct: 196 LERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLEKYKDLFTEKEKRSNK 255

Query: 277 KYKGKRKSTKGNQ 287
             K K  S KG +
Sbjct: 256 --KSKSSSMKGKK 266

[Close]

BLAST of CmoCh19G003090 vs. TAIR10
Match: AT1G04590.2 (AT1G04590.2 BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G18975.4))

HSP 1 Score: 282.7 bits (722), Expect = 2.6e-76
Identity = 148/264 (56.06%), Postives = 194/264 (73.48%), Query Frame = 1


Query: 28  LGVNK------LQIGNSCYCTMLQNQMSKRFGDKDMTDKDVNNSKPLYQTSERNIGDIRK 87
           LGVN+      L++ +  Y  +  +  S +   K+  ++D ++S     + + N  + RK
Sbjct: 79  LGVNQTNKPAFLRVQSMSYQFVADSHSSPKRIVKNEDEEDFSDS-----SKKGNAENPRK 138

Query: 88  HQIGENVSRKDKIDFLVNTLMDLRDSKEAVYGALDAWVAWEQDFPIASLKHALAVLEKEN 147
           HQIGEN+ +KDKI FLVNTL+D+ D+KEAVYGALDAWVAWE++FPIASLK  +A LEKE+
Sbjct: 139 HQIGENIPKKDKIKFLVNTLLDIEDNKEAVYGALDAWVAWERNFPIASLKIVIASLEKEH 198

Query: 148 QWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQLC 207
           QWHR+VQVIKW+LSKGQG TM  YGQLIRALDMD RAEEAH  W  K+G+DLHSVPWQLC
Sbjct: 199 QWHRMVQVIKWILSKGQGNTMGTYGQLIRALDMDRRAEEAHVIWRKKVGNDLHSVPWQLC 258

Query: 208 RSMISIYYRNKMLEDLV---KLFKNLEAFGRKPPEKSIVQRVADACEMLGLVEEKERVLV 267
             M+ IY+RN ML++LV   KLFK+LE++ RKPP+K IVQ VADA E+LG+++EKERV+ 
Sbjct: 259 LQMMRIYFRNNMLQELVKVMKLFKDLESYDRKPPDKHIVQTVADAYELLGMLDEKERVVT 318

Query: 268 KYNYLF----TDEKKGSIKKYKGK 279
           KY++L     +D+K     + K K
Sbjct: 319 KYSHLLLGTPSDDKPSRSSRKKKK 337

[Close]

BLAST of CmoCh19G003090 vs. TAIR10
Match: AT4G18975.1 (AT4G18975.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 146.0 bits (367), Expect = 3.7e-35
Identity = 76/183 (41.53%), Postives = 112/183 (61.20%), Query Frame = 1


Query: 97  LVNTLMDLRDSKEAVYGALDAWVAWEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSK 156
           LV  L  L + KEAVYGAL+ WVAWE +FPI +   AL +L K +QWHRV+Q+ KWMLSK
Sbjct: 101 LVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKRSQWHRVIQLAKWMLSK 160

Query: 157 GQGTTMNVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLED 216
           GQG TM  Y  L+ A DMD RA+EA   W M + +   S+P +L   MI++Y  + + + 
Sbjct: 161 GQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRLFARMIALYAHHDLHDK 220

Query: 217 LVKLFKNLEAFGRKPPEKSIVQRVADACEMLGLVEEKE----RVLVKYNYLFTDEKKGSI 276
           ++++F ++E     P E S  +RVA A   L   E ++    R L +Y Y++ + ++  +
Sbjct: 221 VIEVFADMEELKVSPDEDS-ARRVARAFRELNQEENRKLILRRYLSEYKYIYFNGERVRV 280

[Close]

BLAST of CmoCh19G003090 vs. TAIR10
Match: AT4G21190.1 (AT4G21190.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 129.4 bits (324), Expect = 3.6e-30
Identity = 71/192 (36.98%), Postives = 107/192 (55.73%), Query Frame = 1


Query: 97  LVNTLMDLRDSKEAVYGALDAWVAWEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSK 156
           ++  +  L + KE VYGALD+++AWE +FP+  +K AL +LE E +W +++QV KWMLSK
Sbjct: 61  MIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTKWMLSK 120

Query: 157 GQGTTMNVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLED 216
           GQG TM  Y  L+ AL  D+R +EA + W       L   P +    MISIYY+  M + 
Sbjct: 121 GQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRDMHQK 180

Query: 217 LVKLFKNLEAFGRKPPEKSIVQRVADACEMLGLVEEKERVLVKYNYLFTDEKKGSIKKYK 276
           L ++F ++E  G K P  +IV  V      L + ++ E+++ KY        +   +  K
Sbjct: 181 LFEVFADMEELGVK-PNVAIVSMVGKVFVKLEMKDKYEKLMKKY-----PPPQWEFRYIK 240

Query: 277 GKRKSTKGNQDN 289
           G+R   K  Q N
Sbjct: 241 GRRVKVKAKQLN 246

[Close]

BLAST of CmoCh19G003090 vs. NCBI nr
Match: gi|659110487|ref|XP_008455250.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic [Cucumis melo])

HSP 1 Score: 487.6 bits (1254), Expect = 1.5e-134
Identity = 246/301 (81.73%), Postives = 270/301 (89.70%), Query Frame = 1


Query: 1   MLIRRFHRAATWATPLLRDTTVGQIMELGVNKLQIGNSCYCTMLQNQMSKRFGDKDMTDK 60
           MLIRRF+RAA WATPLLR  TVG+ MELGV++LQ+G S YCTM+Q+QM K+  DKD  +K
Sbjct: 1   MLIRRFYRAAAWATPLLRHPTVGKTMELGVSRLQVGCSWYCTMIQDQMYKQLADKDRKNK 60

Query: 61  DVNNSKPLYQTSERNIGDIRKHQIGENVSRKDKIDFLVNTLMDLRDSKEAVYGALDAWVA 120
           DV+NSK L   SE+NIGDIRKH+IGENVSRKDKI FLVNTL+DLRDSKEAVYGALDAWVA
Sbjct: 61  DVDNSKALGHISEQNIGDIRKHKIGENVSRKDKISFLVNTLLDLRDSKEAVYGALDAWVA 120

Query: 121 WEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE 180
           WEQDFPIASLKH LA LEKE QWHR+VQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE
Sbjct: 121 WEQDFPIASLKHVLAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE 180

Query: 181 AHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLEDLVKLFKNLEAFGRKPPEKSIVQRV 240
           AHKFWVMKIGSDLHSVPWQLCRSMI+IYYRNKMLEDLVKLFK+LEAFGRKPP+KSIVQRV
Sbjct: 181 AHKFWVMKIGSDLHSVPWQLCRSMIAIYYRNKMLEDLVKLFKDLEAFGRKPPDKSIVQRV 240

Query: 241 ADACEMLGLVEEKERVLVKYNYLFTDEKKGSIKKY--------KGKRKSTKGNQDNSDLM 294
           ADACEMLGL+EEKERVLVKY YLF DEK+ S+KKY        K KRKSTKG++DNS+L+
Sbjct: 241 ADACEMLGLLEEKERVLVKYKYLF-DEKQESMKKYKRVSFEKPKRKRKSTKGSEDNSNLV 300

[Close]

BLAST of CmoCh19G003090 vs. NCBI nr
Match: gi|778724238|ref|XP_011658763.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 485.3 bits (1248), Expect = 7.4e-134
Identity = 241/301 (80.07%), Postives = 266/301 (88.37%), Query Frame = 1


Query: 1   MLIRRFHRAATWATPLLRDTTVGQIMELGVNKLQIGNSCYCTMLQNQMSKRFGDKDMTDK 60
           MLIRR HRAA WATPLLR  TVGQ MELGV++LQ+G+SCYCT +Q+QM ++  DKD  DK
Sbjct: 1   MLIRRIHRAAAWATPLLRHPTVGQTMELGVSRLQVGSSCYCTTIQDQMCQQLADKDRKDK 60

Query: 61  DVNNSKPLYQTSERNIGDIRKHQIGENVSRKDKIDFLVNTLMDLRDSKEAVYGALDAWVA 120
           DVN+SK L   SE+NIGDIRKHQIG+N+SRKDKI FLVNTL+DLRDSKEAVYGALDAWVA
Sbjct: 61  DVNSSKALGHISEQNIGDIRKHQIGKNISRKDKIHFLVNTLLDLRDSKEAVYGALDAWVA 120

Query: 121 WEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE 180
           WEQDFPIA LKH LA LEKE QWHR+VQVIKWMLSKGQGTTMNVYGQLIRALDMDHR EE
Sbjct: 121 WEQDFPIAPLKHVLAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRGEE 180

Query: 181 AHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLEDLVKLFKNLEAFGRKPPEKSIVQRV 240
           AHKFWVMKIGSDLHSVPWQ+CRSM++IYYRNK LEDLVKLFK+LEAFGRKPP+KSIVQRV
Sbjct: 181 AHKFWVMKIGSDLHSVPWQVCRSMMAIYYRNKRLEDLVKLFKDLEAFGRKPPDKSIVQRV 240

Query: 241 ADACEMLGLVEEKERVLVKYNYLFTDEKKGSIKKY--------KGKRKSTKGNQDNSDLM 294
           ADACEMLGL+EEKERVLVKY YLF DEK+G +KKY        K KRKSTKG +DNS+L+
Sbjct: 241 ADACEMLGLLEEKERVLVKYKYLF-DEKEGPMKKYKRISFEKSKRKRKSTKGTEDNSNLV 300

[Close]

BLAST of CmoCh19G003090 vs. NCBI nr
Match: gi|700188441|gb|KGN43674.1| (hypothetical protein Csa_7G057510 [Cucumis sativus])

HSP 1 Score: 380.2 bits (975), Expect = 3.3e-102
Identity = 180/220 (81.82%), Postives = 198/220 (90.00%), Query Frame = 1


Query: 1   MLIRRFHRAATWATPLLRDTTVGQIMELGVNKLQIGNSCYCTMLQNQMSKRFGDKDMTDK 60
           MLIRR HRAA WATPLLR  TVGQ MELGV++LQ+G+SCYCT +Q+QM ++  DKD  DK
Sbjct: 1   MLIRRIHRAAAWATPLLRHPTVGQTMELGVSRLQVGSSCYCTTIQDQMCQQLADKDRKDK 60

Query: 61  DVNNSKPLYQTSERNIGDIRKHQIGENVSRKDKIDFLVNTLMDLRDSKEAVYGALDAWVA 120
           DVN+SK L   SE+NIGDIRKHQIG+N+SRKDKI FLVNTL+DLRDSKEAVYGALDAWVA
Sbjct: 61  DVNSSKALGHISEQNIGDIRKHQIGKNISRKDKIHFLVNTLLDLRDSKEAVYGALDAWVA 120

Query: 121 WEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE 180
           WEQDFPIA LKH LA LEKE QWHR+VQVIKWMLSKGQGTTMNVYGQLIRALDMDHR EE
Sbjct: 121 WEQDFPIAPLKHVLAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRGEE 180

Query: 181 AHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLEDLVKL 221
           AHKFWVMKIGSDLHSVPWQ+CRSM++IYYRNK LEDLVK+
Sbjct: 181 AHKFWVMKIGSDLHSVPWQVCRSMMAIYYRNKRLEDLVKV 220

[Close]

BLAST of CmoCh19G003090 vs. NCBI nr
Match: gi|225433730|ref|XP_002269673.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Vitis vinifera])

HSP 1 Score: 339.7 bits (870), Expect = 5.0e-90
Identity = 174/272 (63.97%), Postives = 202/272 (74.26%), Query Frame = 1


Query: 22  VGQIMELGVNKLQIGNSCYCTMLQNQMS--KRFGDKDMTDKDVNNSKPLYQTSERNIGDI 81
           V Q  +LG  ++Q   S Y T  Q QMS     G+        NN +P+Y  S ++   +
Sbjct: 15  VRQFTQLGATRVQTLASSYSTFTQTQMSDTSNVGEVAFLGGQCNN-QPMYHDSGKDAASV 74

Query: 82  RKHQIGENVSRKDKIDFLVNTLMDLRDSKEAVYGALDAWVAWEQDFPIASLKHALAVLEK 141
            KHQIGENVSRKDKI+FLV TL+DL+DSKEAVYGALDAWVAWEQ+FPIASLK  L  LEK
Sbjct: 75  HKHQIGENVSRKDKINFLVTTLLDLKDSKEAVYGALDAWVAWEQNFPIASLKRVLITLEK 134

Query: 142 ENQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQ 201
           E QWHRV+QV+KWMLSKGQGTTM  YGQLIRALDMDHRAEEAH+FWV KIG+DLHSVPW 
Sbjct: 135 EQQWHRVIQVVKWMLSKGQGTTMGTYGQLIRALDMDHRAEEAHEFWVKKIGTDLHSVPWH 194

Query: 202 LCRSMISIYYRNKMLEDLVKLFKNLEAFGRKPPEKSIVQRVADACEMLGLVEEKERVLVK 261
           LC  MIS+YYRN MLE+LVKLFK LEAF RKP +K +V++VADA EMLGL+EEKER+  K
Sbjct: 195 LCHRMISVYYRNNMLENLVKLFKGLEAFDRKPQDKLVVKKVADAYEMLGLLEEKERIFEK 254

Query: 262 YNYLFTDEKKGSIKKYK---------GKRKST 283
           Y+YLFT+   G  KK K         G+RK T
Sbjct: 255 YDYLFTETVAGKPKKSKKFLSEKKKSGRRKPT 285

[Close]

BLAST of CmoCh19G003090 vs. NCBI nr
Match: gi|296089642|emb|CBI39461.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 339.7 bits (870), Expect = 5.0e-90
Identity = 174/272 (63.97%), Postives = 202/272 (74.26%), Query Frame = 1


Query: 22  VGQIMELGVNKLQIGNSCYCTMLQNQMS--KRFGDKDMTDKDVNNSKPLYQTSERNIGDI 81
           V Q  +LG  ++Q   S Y T  Q QMS     G+        NN +P+Y  S ++   +
Sbjct: 11  VRQFTQLGATRVQTLASSYSTFTQTQMSDTSNVGEVAFLGGQCNN-QPMYHDSGKDAASV 70

Query: 82  RKHQIGENVSRKDKIDFLVNTLMDLRDSKEAVYGALDAWVAWEQDFPIASLKHALAVLEK 141
            KHQIGENVSRKDKI+FLV TL+DL+DSKEAVYGALDAWVAWEQ+FPIASLK  L  LEK
Sbjct: 71  HKHQIGENVSRKDKINFLVTTLLDLKDSKEAVYGALDAWVAWEQNFPIASLKRVLITLEK 130

Query: 142 ENQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEEAHKFWVMKIGSDLHSVPWQ 201
           E QWHRV+QV+KWMLSKGQGTTM  YGQLIRALDMDHRAEEAH+FWV KIG+DLHSVPW 
Sbjct: 131 EQQWHRVIQVVKWMLSKGQGTTMGTYGQLIRALDMDHRAEEAHEFWVKKIGTDLHSVPWH 190

Query: 202 LCRSMISIYYRNKMLEDLVKLFKNLEAFGRKPPEKSIVQRVADACEMLGLVEEKERVLVK 261
           LC  MIS+YYRN MLE+LVKLFK LEAF RKP +K +V++VADA EMLGL+EEKER+  K
Sbjct: 191 LCHRMISVYYRNNMLENLVKLFKGLEAFDRKPQDKLVVKKVADAYEMLGLLEEKERIFEK 250

Query: 262 YNYLFTDEKKGSIKKYK---------GKRKST 283
           Y+YLFT+   G  KK K         G+RK T
Sbjct: 251 YDYLFTETVAGKPKKSKKFLSEKKKSGRRKPT 281

The following BLAST results are available for this feature:

BLAST of CmoCh19G003090 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP322_ARATH	6.6e-34	41.53	Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidop...	[more]
PP332_ARATH	6.4e-29	36.98	Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana GN...	[more]

BLAST of CmoCh19G003090 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3W9_CUCSA	2.3e-102	81.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G057510 PE=4 SV=1	[more]
B9SJZ4_RICCO	5.6e-88	62.77	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0577750 PE=4 SV=1	[more]
F6I4B4_VITVI	3.6e-87	68.51	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0062g01340 PE=4 SV=...	[more]
A0A067LEC7_JATCU	1.9e-83	57.86	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24025 PE=4 SV=1	[more]
V4VTA3_9ROSI	3.2e-83	66.01	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021498mg PE=4 SV=1	[more]

BLAST of CmoCh19G003090 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G04590.2	2.6e-76	56.06	BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat...	[more]
AT4G18975.1	3.7e-35	41.53	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G21190.1	3.6e-30	36.98	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of CmoCh19G003090 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110487\|ref\|XP_008455250.1\|	1.5e-134	81.73	PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic ...	[more]
gi\|778724238\|ref\|XP_011658763.1\|	7.4e-134	80.07	PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic ...	[more]
gi\|700188441\|gb\|KGN43674.1\|	3.3e-102	81.82	hypothetical protein Csa_7G057510 [Cucumis sativus]	[more]
gi\|225433730\|ref\|XP_002269673.1\|	5.0e-90	63.97	PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic ...	[more]
gi\|296089642\|emb\|CBI39461.3\|	5.0e-90	63.97	unnamed protein product [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G003090.1	CmoCh19G003090.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 84..283 score: 7.6
None	No IPR available	PANTHER	PTHR24015:SF716	SUBFAMILY NOT NAMED	coord: 84..283 score: 7.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh19G003090	Cucsa.345850	Cucumber (Gy14) v1	cgycmoB0948
CmoCh19G003090	Csa7G057510	Cucumber (Chinese Long) v2	cmocuB523
CmoCh19G003090	ClCG09G013520	Watermelon (Charleston Gray)	cmowcgB442
CmoCh19G003090	CSPI07G05170	Wild cucumber (PI 183967)	cmocpiB529
CmoCh19G003090	Lsi03G008070	Bottle gourd (USVL1VR-Ls)	cmolsiB466
CmoCh19G003090	Cp4.1LG15g02540	Cucurbita pepo (Zucchini)	cmocpeB481
CmoCh19G003090	MELO3C028588.2	Melon (DHL92) v3.6.1	cmomedB515
CmoCh19G003090	CsaV3_7G006130	Cucumber (Chinese Long) v3	cmocucB0627
CmoCh19G003090	Cla97C09G176130	Watermelon (97103) v2	cmowmbB532
CmoCh19G003090	Bhi05G000643	Wax gourd	cmowgoB0656
CmoCh19G003090	CsGy7G004740	Cucumber (Gy14) v2	cgybcmoB931
CmoCh19G003090	Carg24583	Silver-seed gourd	carcmoB0890

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh19G003090	Cucurbita pepo (Zucchini)	cmocpeB493
CmoCh19G003090	Cucumber (Gy14) v2	cgybcmoB764
CmoCh19G003090	Silver-seed gourd	carcmoB1001
CmoCh19G003090	Cucumber (Chinese Long) v3	cmocucB0619
CmoCh19G003090	Cucurbita moschata (Rifu)	cmocmoB109
CmoCh19G003090	Cucumber (Gy14) v1	cgycmoB0528
CmoCh19G003090	Cucurbita maxima (Rimu)	cmacmoB147
CmoCh19G003090	Cucurbita maxima (Rimu)	cmacmoB508
CmoCh19G003090	Wild cucumber (PI 183967)	cmocpiB522
CmoCh19G003090	Cucumber (Chinese Long) v2	cmocuB515
CmoCh19G003090	Melon (DHL92) v3.5.1	cmomeB446
CmoCh19G003090	Watermelon (97103) v1	cmowmB475