Carg24526 (gene) Silver-seed gourd

Overview
NameCarg24526
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionRING-H2 finger protein
LocationCucurbita_argyrosperma_scaffold_121 : 370755 .. 371720 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTCACCTCCACCACCCTTGGAGTTTCCTGATGATGATTCATCCCCAAATTTTTCACCTCTTGTTATAGCAATTATTGGAATTCTAGCAAGTGCTTTCCTTCTTTTAAGCTATTACACCATCATTTCAAAGTATTGTGGCAACACAAATCGCTTGTTTGGAACTGGCAATCATGACCCAAATGAGGAATTTGAAGATAATCATAACCCAACACTTCATGAACCATGGCATGTTGCCACAAATGGCTTGGATGAGGCAATGGTTAAGTCCATTACGGTTTGCAAGTACAAGAGAGGAGATGGGTTGGTTGAAGGATCTGATTGCTCTGTTTGTCTTAATGAGTTTCAAGAAGATGATAGCCTTAGGTTGTTGCCTAAATGCAGCCATGCTTTTCATCTTCAATGTATTGATACTTGGCTCAAATCACACTCCAATTGCCCGTTATGTCGTGCTAATATCGTCTCTGTCGATGCTTCTCCTCCCGTTCACCTTCCTGCAAGCAATGCATATCCCATAACTAATGAGACCATGCCAGAGACTTCTCAGACACGTGACCCTGAGGCTGTTTCACAAGATTCAGAACGAAGTTTGAGAAGTGATTGTGGGAAGAACTCGGTTCGTGCCTTCAGTGACCTCGGAGTACCAGAGAAAAGAGACACTGTCATTGAGCTTAGAGACGGCGAATTGCAGCAAATTAGAAGGTCCATTTCAATGGATCATTGCAGCCAAAATCATATCATTATTGCGGATGTTCTACGTCTAAACGACGACGAGTATGAAGCAGGAAGTTCAGGTGATGTTGGATCATCCAAATGTTCAGTGGGAGAAGACAGCAGGTCCAGCCACAGAAAAACAATCCTGCATTGTGTTATGAGTCCTGTTTCGATTAAGAGATCGTTTTCAGGTGGAAGATTTTCTCTCATCAGGCATGGAAAAGAACAAAGAGAAATCGCCCGTGTCTGA

mRNA sequence

ATGTTGTCACCTCCACCACCCTTGGAGTTTCCTGATGATGATTCATCCCCAAATTTTTCACCTCTTGTTATAGCAATTATTGGAATTCTAGCAAGTGCTTTCCTTCTTTTAAGCTATTACACCATCATTTCAAAGTATTGTGGCAACACAAATCGCTTGTTTGGAACTGGCAATCATGACCCAAATGAGGAATTTGAAGATAATCATAACCCAACACTTCATGAACCATGGCATGTTGCCACAAATGGCTTGGATGAGGCAATGGTTAAGTCCATTACGGTTTGCAAGTACAAGAGAGGAGATGGGTTGGTTGAAGGATCTGATTGCTCTGTTTGTCTTAATGAGTTTCAAGAAGATGATAGCCTTAGGTTGTTGCCTAAATGCAGCCATGCTTTTCATCTTCAATGTATTGATACTTGGCTCAAATCACACTCCAATTGCCCGTTATGTCGTGCTAATATCGTCTCTGTCGATGCTTCTCCTCCCGTTCACCTTCCTGCAAGCAATGCATATCCCATAACTAATGAGACCATGCCAGAGACTTCTCAGACACGTGACCCTGAGGCTGTTTCACAAGATTCAGAACGAAGTTTGAGAAGTGATTGTGGGAAGAACTCGGTTCGTGCCTTCAGTGACCTCGGAGTACCAGAGAAAAGAGACACTGTCATTGAGCTTAGAGACGGCGAATTGCAGCAAATTAGAAGGTCCATTTCAATGGATCATTGCAGCCAAAATCATATCATTATTGCGGATGTTCTACGTCTAAACGACGACGAGTATGAAGCAGGAAGTTCAGGTGATGTTGGATCATCCAAATGTTCAGTGGGAGAAGACAGCAGGTCCAGCCACAGAAAAACAATCCTGCATTGTGTTATGAGTCCTGTTTCGATTAAGAGATCGTTTTCAGGTGGAAGATTTTCTCTCATCAGGCATGGAAAAGAACAAAGAGAAATCGCCCGTGTCTGA

Coding sequence (CDS)

ATGTTGTCACCTCCACCACCCTTGGAGTTTCCTGATGATGATTCATCCCCAAATTTTTCACCTCTTGTTATAGCAATTATTGGAATTCTAGCAAGTGCTTTCCTTCTTTTAAGCTATTACACCATCATTTCAAAGTATTGTGGCAACACAAATCGCTTGTTTGGAACTGGCAATCATGACCCAAATGAGGAATTTGAAGATAATCATAACCCAACACTTCATGAACCATGGCATGTTGCCACAAATGGCTTGGATGAGGCAATGGTTAAGTCCATTACGGTTTGCAAGTACAAGAGAGGAGATGGGTTGGTTGAAGGATCTGATTGCTCTGTTTGTCTTAATGAGTTTCAAGAAGATGATAGCCTTAGGTTGTTGCCTAAATGCAGCCATGCTTTTCATCTTCAATGTATTGATACTTGGCTCAAATCACACTCCAATTGCCCGTTATGTCGTGCTAATATCGTCTCTGTCGATGCTTCTCCTCCCGTTCACCTTCCTGCAAGCAATGCATATCCCATAACTAATGAGACCATGCCAGAGACTTCTCAGACACGTGACCCTGAGGCTGTTTCACAAGATTCAGAACGAAGTTTGAGAAGTGATTGTGGGAAGAACTCGGTTCGTGCCTTCAGTGACCTCGGAGTACCAGAGAAAAGAGACACTGTCATTGAGCTTAGAGACGGCGAATTGCAGCAAATTAGAAGGTCCATTTCAATGGATCATTGCAGCCAAAATCATATCATTATTGCGGATGTTCTACGTCTAAACGACGACGAGTATGAAGCAGGAAGTTCAGGTGATGTTGGATCATCCAAATGTTCAGTGGGAGAAGACAGCAGGTCCAGCCACAGAAAAACAATCCTGCATTGTGTTATGAGTCCTGTTTCGATTAAGAGATCGTTTTCAGGTGGAAGATTTTCTCTCATCAGGCATGGAAAAGAACAAAGAGAAATCGCCCGTGTCTGA

Protein sequence

MLSPPPPLEFPDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRLFGTGNHDPNEEFEDNHNPTLHEPWHVATNGLDEAMVKSITVCKYKRGDGLVEGSDCSVCLNEFQEDDSLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPASNAYPITNETMPETSQTRDPEAVSQDSERSLRSDCGKNSVRAFSDLGVPEKRDTVIELRDGELQQIRRSISMDHCSQNHIIIADVLRLNDDEYEAGSSGDVGSSKCSVGEDSRSSHRKTILHCVMSPVSIKRSFSGGRFSLIRHGKEQREIARV
Homology
[Close]
BLAST of Carg24526 vs. NCBI nr
Match: XP_023553748.1 (RING-H2 finger protein ATL52-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 632.5 bits (1630), Expect = 7.9e-178
Identity = 312/321 (97.20%), Postives = 316/321 (98.44%), Query Frame = 0 

Query: 1   MLSPPPPLEFPDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRLFGTGNHD 60
           MLSPPPPLEFPDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRLFGTGNHD
Sbjct: 35  MLSPPPPLEFPDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRLFGTGNHD 94

Query: 61  PNEEFEDNHNPTLHEPWHVATNGLDEAMVKSITVCKYKRGDGLVEGSDCSVCLNEFQEDD 120
           PNEEFEDNHNPTLHEPWHVATNGLDEAMVKSIT+CKYKRGDGLVEGSDCSVCL+EFQEDD
Sbjct: 95  PNEEFEDNHNPTLHEPWHVATNGLDEAMVKSITICKYKRGDGLVEGSDCSVCLSEFQEDD 154

Query: 121 SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPASNAYPITNETMPE 180
           SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPASNAYPITNETMPE
Sbjct: 155 SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPASNAYPITNETMPE 214

Query: 181 TSQTRDPEAVSQDSERSLRSDCGKNSVRAFSDLGVPEKRDTVIELRDGELQQIRRSISMD 240
           TSQT DPEAVSQDSERS RS+CGKNSVRAFSDLGV EKRDTVIELRDGELQQIRRSISMD
Sbjct: 215 TSQTHDPEAVSQDSERSFRSNCGKNSVRAFSDLGVLEKRDTVIELRDGELQQIRRSISMD 274

Query: 241 HCSQNHIIIADVLRLNDDEYEAGSSGDVGSSKCSVGEDSRSSHRKTILHCVMSPVSIKRS 300
           HCSQNHIIIADVLRLNDDEYEAGSSGDVGSSKCSVGEDS+SSHRKTILHCVMSPVSIKRS
Sbjct: 275 HCSQNHIIIADVLRLNDDEYEAGSSGDVGSSKCSVGEDSKSSHRKTILHCVMSPVSIKRS 334

Query: 301 FSGGRFSLIRHGKEQREIARV 322
           FS GRFSLIRHGKE REIARV
Sbjct: 335 FSSGRFSLIRHGKEHREIARV 355

[Close]
BLAST of Carg24526 vs. NCBI nr
Match: XP_022967441.1 (RING-H2 finger protein ATL52-like [Cucurbita maxima])

HSP 1 Score: 631.7 bits (1628), Expect = 1.3e-177
Identity = 312/321 (97.20%), Postives = 315/321 (98.13%), Query Frame = 0 

Query: 1   MLSPPPPLEFPDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRLFGTGNHD 60
           MLSPPPPLEFPDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRLFGTGNHD
Sbjct: 35  MLSPPPPLEFPDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRLFGTGNHD 94

Query: 61  PNEEFEDNHNPTLHEPWHVATNGLDEAMVKSITVCKYKRGDGLVEGSDCSVCLNEFQEDD 120
           PNEEFEDNHNPTLHEPWHVATNGLDEAMVKSITVCKYKRGDGLVEGSDCSVCL+EFQEDD
Sbjct: 95  PNEEFEDNHNPTLHEPWHVATNGLDEAMVKSITVCKYKRGDGLVEGSDCSVCLSEFQEDD 154

Query: 121 SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPASNAYPITNETMPE 180
           SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPASNAYPITNETMPE
Sbjct: 155 SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPASNAYPITNETMPE 214

Query: 181 TSQTRDPEAVSQDSERSLRSDCGKNSVRAFSDLGVPEKRDTVIELRDGELQQIRRSISMD 240
           TSQT DPEAVSQDSERSLRSDCGK +VRAFSDLGVPEKRDTVIELRDGELQQIRRSISMD
Sbjct: 215 TSQTHDPEAVSQDSERSLRSDCGKTTVRAFSDLGVPEKRDTVIELRDGELQQIRRSISMD 274

Query: 241 HCSQNHIIIADVLRLNDDEYEAGSSGDVGSSKCSVGEDSRSSHRKTILHCVMSPVSIKRS 300
           HCSQNHIIIADVL LNDDEYEAGSSGDVGSSKCSVGEDS+SSHRKTILHCVMSPVSIKRS
Sbjct: 275 HCSQNHIIIADVLHLNDDEYEAGSSGDVGSSKCSVGEDSKSSHRKTILHCVMSPVSIKRS 334

Query: 301 FSGGRFSLIRHGKEQREIARV 322
           FS GRFSLIRHGKE  EIARV
Sbjct: 335 FSSGRFSLIRHGKEHWEIARV 355

[Close]
BLAST of Carg24526 vs. NCBI nr
Match: XP_016903486.1 (PREDICTED: E3 ubiquitin-protein ligase Os04g0590900-like [Cucumis melo])

HSP 1 Score: 533.1 bits (1372), Expect = 6.5e-148
Identity = 266/325 (81.85%), Postives = 290/325 (89.23%), Query Frame = 0 

Query: 1   MLSPPPPLEFPDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRLFGTGNHD 60
           M SPPPPLEFPDD+S PNFSPLVIAIIGILASA LL++YYTIISKYCGNTNRL GTGN+D
Sbjct: 37  MFSPPPPLEFPDDNSGPNFSPLVIAIIGILASALLLVTYYTIISKYCGNTNRLSGTGNYD 96

Query: 61  PNEEFEDNHNPTLHEPWHVATNGLDEAMVKSITVCKYKRGDGLVEGSDCSVCLNEFQEDD 120
           P+EE+EDNHNPTLHEPWHVAT GLDEA++KSITVCKYKRGDGLVEGSDCSVCL+EFQED+
Sbjct: 97  PSEEYEDNHNPTLHEPWHVATTGLDEALIKSITVCKYKRGDGLVEGSDCSVCLSEFQEDE 156

Query: 121 SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPASNAYPITNETMPE 180
           SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANI+S++A  PV LPAS AYPITNET+PE
Sbjct: 157 SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIISINAGSPVQLPASTAYPITNETVPE 216

Query: 181 TSQTRDPEAVSQDSERSLRSDCGKNSVRAFSDLGVPEKRDTVIELRDGELQQIRRSISMD 240
           +SQ  D EAVS DS +S  ++  KNSVRAFSDLG  EKRDT IELRDG LQQIRRSISMD
Sbjct: 217 SSQDNDHEAVSLDSGQSFSNEDAKNSVRAFSDLGNLEKRDTTIELRDGRLQQIRRSISMD 276

Query: 241 HCSQNHIIIADVLRLNDDEY----EAGSSGDVGSSKCSVGEDSRSSHRKTILHCVMSPVS 300
           HCSQN +IIADVLRLN+DE+    EAGSSGDVGSSK SVGEDSRSSHRK ILHCVMSPVS
Sbjct: 277 HCSQNRLIIADVLRLNEDEFGGIDEAGSSGDVGSSKHSVGEDSRSSHRKRILHCVMSPVS 336

Query: 301 IKRSFSGGRFSLIRHGKEQREIARV 322
           +KRSFS GR SL +HG+E R IA V
Sbjct: 337 MKRSFSSGRLSLTKHGREHRGIAPV 361

[Close]
BLAST of Carg24526 vs. NCBI nr
Match: XP_011652647.1 (PREDICTED: E3 ubiquitin-protein ligase Os04g0590900-like [Cucumis sativus] >KGN60374.1 hypothetical protein Csa_3G901190 [Cucumis sativus])

HSP 1 Score: 531.6 bits (1368), Expect = 1.9e-147
Identity = 267/325 (82.15%), Postives = 291/325 (89.54%), Query Frame = 0 

Query: 1   MLSPPPPLEFPDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRLFGTGNHD 60
           M SPPPPLEFP D+S P+FSPLVIAIIGILASAFLL++YYTIISKYCGNTNRL GTGNHD
Sbjct: 37  MFSPPPPLEFP-DNSGPHFSPLVIAIIGILASAFLLVTYYTIISKYCGNTNRLSGTGNHD 96

Query: 61  PNEEFEDNHNPTLHEPWHVATNGLDEAMVKSITVCKYKRGDGLVEGSDCSVCLNEFQEDD 120
           P+EE+EDNHNPT HEPWHVAT GLDEA++KSITVCKYKR DGLVEGSDCSVCL+EFQED+
Sbjct: 97  PSEEYEDNHNPTFHEPWHVATTGLDEALIKSITVCKYKREDGLVEGSDCSVCLSEFQEDE 156

Query: 121 SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPASNAYPITNETMPE 180
           SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANI+S++A  PV LPAS AYPITNET+PE
Sbjct: 157 SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIISINAGSPVQLPASTAYPITNETVPE 216

Query: 181 TSQTRDPEAVSQDSERSLRSDCGKNSVRAFSDLGVPEKRDTVIELRDGELQQIRRSISMD 240
           TSQ  D EAVS DS +S  ++ GKNSVRAFSDLG  EKRDT+IELRDG LQQIRRSISMD
Sbjct: 217 TSQDNDYEAVSLDSGQSFSNEDGKNSVRAFSDLGNLEKRDTIIELRDGRLQQIRRSISMD 276

Query: 241 HCSQNHIIIADVLRLNDDEY----EAGSSGDVGSSKCSVGEDSRSSHRKTILHCVMSPVS 300
           HCSQNHIIIADVLRLN+D++    EAGSSGDVGSSK SVGEDSRSSHRK ILHCVMSPVS
Sbjct: 277 HCSQNHIIIADVLRLNEDDFGGIDEAGSSGDVGSSKHSVGEDSRSSHRKRILHCVMSPVS 336

Query: 301 IKRSFSGGRFSLIRHGKEQREIARV 322
           +KRSFS GR SL +HG+E R IA V
Sbjct: 337 MKRSFSSGRLSLTKHGREHRGIAPV 360

[Close]
BLAST of Carg24526 vs. NCBI nr
Match: XP_022159853.1 (RING-H2 finger protein ATL52-like isoform X1 [Momordica charantia])

HSP 1 Score: 521.2 bits (1341), Expect = 2.6e-144
Identity = 264/332 (79.52%), Postives = 282/332 (84.94%), Query Frame = 0 

Query: 1   MLSPPPPLEFPDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRLFGTGNHD 60
           M SPPPPLEFPDDDS PNFSPLVIAIIGILASAFLL+SYYTIISKYCGNTNRL  TGNHD
Sbjct: 126 MFSPPPPLEFPDDDSGPNFSPLVIAIIGILASAFLLVSYYTIISKYCGNTNRLSRTGNHD 185

Query: 61  PNEEFEDNHNPTLHEPWHVATNGLDEAMVKSITVCKYKRGDGLVEGSDCSVCLNEFQEDD 120
           PNEEFEDNHNPTLHEPWH+AT GLDEA++KSITVCKYKRGDGLVEGSDC+VCL+EFQED+
Sbjct: 186 PNEEFEDNHNPTLHEPWHIATTGLDEALIKSITVCKYKRGDGLVEGSDCAVCLSEFQEDE 245

Query: 121 SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPASNAYPITNETMPE 180
           SLRLLPKCSHAFHLQCIDTW KSHSNCPLCRA IVS  AS P  LP S A PIT+E MPE
Sbjct: 246 SLRLLPKCSHAFHLQCIDTWFKSHSNCPLCRAYIVSFSASSPFQLPPSTAVPITSEAMPE 305

Query: 181 TSQTRDPEAVSQDSERSLRSD-------CGKNSVRAFSDLGVPEKRDTVIELRDGELQQI 240
           TS T D +AVSQDS RS  +D       C KNS RA SDLG  EKRDTVIELRDG LQQI
Sbjct: 306 TSHTTDHDAVSQDSGRSFGNDDLMQAHNCAKNSFRALSDLGNLEKRDTVIELRDGRLQQI 365

Query: 241 RRSISMDHCSQNHIIIADVLRLNDDEY----EAGSSGDVGSSKCSVGEDSRSSHRKTILH 300
           RRSISMDHC QNH IIAD+L+LN+D +    E+GSSGDVGSSK SVGEDS+SSHRK ILH
Sbjct: 366 RRSISMDHCCQNHTIIADILQLNEDGFGAIDESGSSGDVGSSKHSVGEDSKSSHRKRILH 425

Query: 301 CVMSPVSIKRSFSGGRFSLIRHGKEQREIARV 322
           CVMSPVS+KRSFS GRFSL RHG+E R I  V
Sbjct: 426 CVMSPVSMKRSFSSGRFSLTRHGREHRGIGPV 457

[Close]
BLAST of Carg24526 vs. TAIR10
Match: AT5G17600.1 (RING/U-box superfamily protein)

HSP 1 Score: 163.7 bits (413), Expect = 1.9e-40
Identity = 121/302 (40.07%), Postives = 166/302 (54.97%), Query Frame = 0 

Query: 38  SYYTIISKYCGNTNRLFGTGNHDPNEEFEDNHNPT--LHEPWHVATN--GLDEAMVKSIT 97
           SYYT+ISKYC   ++         +E    NHN          ++TN  GL+E+M+KSIT
Sbjct: 73  SYYTLISKYCHRHHQT------SSSETLNLNHNGEGFFSSTQRISTNGDGLNESMIKSIT 132

Query: 98  VCKYKRGDGLVEGSDCSVCLNEFQEDDSLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRAN 157
           V KYK GDG V+GSDCSVCL+EF+E++SLRLLPKC+HAFHL CIDTWLKSHSNCPLCRA 
Sbjct: 133 VYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAF 192

Query: 158 IVSVDASPPVHLPASNAYPITNETMPE----------------TSQTRDPEAVSQDSERS 217
           +  V+ +P   +  + +  + N++                    SQT D ++V    +  
Sbjct: 193 VTGVN-NPTASVGQNVSVVVANQSNSAHQTGSVSEINLNLAGYESQTGDFDSVVVIEDLE 252

Query: 218 LRSDCGKNSVRAFSDLGVPEKRDTVIELRDGELQQIRRSISMDHCSQNHIIIADVLRLND 277
           +    G  +  A S+L +PE+R    E +D +   IRRS+S++  S   + IADVLR  +
Sbjct: 253 I----GSRNSDARSELQLPEERR---ETKDEDSLPIRRSVSLN--SGVVVSIADVLREIE 312

Query: 278 DEYEAGSSGDVGSSKCSVGEDSRSSHRKTILHCVMSPVS------IKRSFSGGRFSLIRH 314
           D  E G SG VG+S+    E+      KTI     +  S        RS S GRF   R+
Sbjct: 313 D--EEGESGGVGTSQRR--EEGEDGDGKTIPPTEANQRSGGVSGFFVRSLSTGRFIFSRY 354

[Close]
BLAST of Carg24526 vs. TAIR10
Match: AT4G17905.1 (RING/U-box superfamily protein)

HSP 1 Score: 149.4 bits (376), Expect = 3.7e-36
Identity = 83/172 (48.26%), Postives = 108/172 (62.79%), Query Frame = 0 

Query: 5   PPPL---EFPDDD--SSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGN--TNRLFG-T 64
           PPP+   +F +D   S+PN SPLVIAI GI A+AFLL +YYT++SKYC N  TN     +
Sbjct: 39  PPPISYEQFLNDGVASNPNLSPLVIAIFGIFATAFLLAAYYTLVSKYCANDTTNEAASES 98

Query: 65  GNHDPNEEFEDNHNPTLHEPWHV--ATNGLDEAMVKSITVCKYKRGDG--LVEGSDCSVC 124
           G  D   +          +P+ +  +T GLD+ ++K I   K K+      + G+DCS+C
Sbjct: 99  GRSDIILDVNSPERGDQDDPFALESSTAGLDDTLIKKIGFFKLKKHQNGFKINGTDCSIC 158

Query: 125 LNEFQEDDSLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVH 165
           L EF ED+SLRLLPKC+H FH+ CID WLKSHSNCPLCRA I+      P H
Sbjct: 159 LGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKIIVPTTQQPEH 210

[Close]
BLAST of Carg24526 vs. TAIR10
Match: AT1G72220.1 (RING/U-box superfamily protein)

HSP 1 Score: 146.7 bits (369), Expect = 2.4e-35
Identity = 79/201 (39.30%), Postives = 112/201 (55.72%), Query Frame = 0 

Query: 11  PDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRL----FGTGNHDPN---- 70
           P  DSS +   + I  I     A LL  ++ +   +  + NR+    + + N D +    
Sbjct: 72  PSQDSSSSLDAISIITITGAVLAILLTGFFLVAKFFSDSVNRVNQGTYQSDNEDNDTVME 131

Query: 71  EEFEDNHNPTLHEPWHVATNGLDEAMVKSITVCKYKRGDGLVEGSDCSVCLNEFQEDDSL 130
           EEF+D      H  W + T GL ++++ SIT+C YKRGDGL+E +DC VCLNEF+ED+SL
Sbjct: 132 EEFQDREQVD-HPIWLIRTTGLQQSIINSITICNYKRGDGLIERTDCPVCLNEFEEDESL 191

Query: 131 RLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVH------LPASNAYPITNE 190
           RLLPKC+HAFH+ CIDTWL SH+NCPLCRA I  +  + P +       P  +   + N+
Sbjct: 192 RLLPKCNHAFHISCIDTWLSSHTNCPLCRAGIAMISVTTPRYSGPVEVTPGGSGSHLEND 251

Query: 191 TMPETSQTRDPEAVSQDSERS 198
            + E         V  D + S
Sbjct: 252 GVDEEDHGEIENRVDSDFKES 271

[Close]
BLAST of Carg24526 vs. TAIR10
Match: AT3G03550.1 (RING/U-box superfamily protein)

HSP 1 Score: 140.2 bits (352), Expect = 2.2e-33
Identity = 93/191 (48.69%), Postives = 118/191 (61.78%), Query Frame = 0 

Query: 83  GLDEAMVKSITVCKYKRGDGLVEGSDCSVCLNEFQEDDSLRLLPKCSHAFHLQCIDTWLK 142
           GLDE+++KSITV KY++ DG VE SDCSVCL+EFQE++SLRLLPKC+HAFH+ CIDTWLK
Sbjct: 133 GLDESLIKSITVYKYRKMDGFVESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLK 192

Query: 143 SHSNCPLCRANIVSVDASPPVHLPASNAYPITNETMPETSQTRDPEAVSQDSERSLRSDC 202
           SHSNCPLCRA IV+  A   V L  +N   +T      T        V+ D E S   + 
Sbjct: 193 SHSNCPLCRAFIVTSSAVEIVDL--TNQQIVTENNSISTGDD-SVVVVNLDLENSRSRN- 252

Query: 203 GKNSVRAFSDLGVPEKRDTVIELRDGELQQIRRSISMDHCSQNHIIIADVLR-LNDDEYE 262
              +V   S    PE +D+    RDGE    RRS S+ +     + IAD+LR + DDE  
Sbjct: 253 --ETVNEGSTPKPPEMQDS----RDGE---ERRSASL-NSGGGVVSIADILREIEDDEES 305

Query: 263 AGSSGDVGSSK 273
           AG    VG+S+
Sbjct: 313 AG----VGTSR 305

[Close]
BLAST of Carg24526 vs. TAIR10
Match: AT4G33565.1 (RING/U-box superfamily protein)

HSP 1 Score: 131.3 bits (329), Expect = 1.0e-30
Identity = 74/202 (36.63%), Postives = 116/202 (57.43%), Query Frame = 0 

Query: 74  HEPWHVATNGLDEAMVKSITVCKYKRGDGLVEGSDCSVCLNEFQEDDSLRLLPKCSHAFH 133
           H  WH+ T GL+  ++ SI VC+Y + DG+VEG+DCSVCL+EF+E+++LRLLPKC HAFH
Sbjct: 182 HPIWHIRTIGLNPTVISSIKVCQYSKKDGVVEGTDCSVCLSEFEEEETLRLLPKCKHAFH 241

Query: 134 LQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPASNAYPITNETMPETSQTRDPEAVSQD 193
           L CIDTWL+SH+NCPLCRA IV  +     H          +E + E S    PE    D
Sbjct: 242 LYCIDTWLRSHTNCPLCRAPIVEANTMIDDH----------SEGLEEIS-VMIPEENGDD 301

Query: 194 SERSLRSDCGKNSVRAFSDLGVPEKRDTVIELRDGELQQIRRSISMDHCSQNHIIIADVL 253
           ++  +  +          D G            + + Q++RRS+S+D  S + + +++V+
Sbjct: 302 TDEEIEEERDGFVSNISRDHG------------ESQQQRVRRSVSLD--SLSGLRVSEVV 357

Query: 254 RLNDDEYEAGSSGDVGSSKCSV 276
            +  ++ +     ++GS + S+
Sbjct: 362 -VGREKEKLKRGNNIGSGRSSL 357

[Close]
BLAST of Carg24526 vs. Swiss-Prot
Match: sp|Q7XLY8|ATL41_ORYSJ (E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2)

HSP 1 Score: 194.1 bits (492), Expect = 2.3e-48
Identity = 143/338 (42.31%), Postives = 179/338 (52.96%), Query Frame = 0 

Query: 4   PPPPLEF----PDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTN----RLFG 63
           PPPP +      DD S P FSPLVIAIIG+LASAFLL+SYYT ISKYCG  +    R+FG
Sbjct: 36  PPPPFDVAGTSADDSSGPVFSPLVIAIIGVLASAFLLVSYYTFISKYCGTVSSLRGRVFG 95

Query: 64  TGN-------HDPNEEFEDNHNPTLHEPWHVA-TNGLDEAMVKSITVCKYKRGDGLVEGS 123
           + +                      HE W+V+  +GLDE ++  ITVCKY+RGDG V  +
Sbjct: 96  SSSGGAXXXXXXXXXXXXXXXXXXXHESWNVSPPSGLDETLINKITVCKYRRGDGFVHTT 155

Query: 124 DCSVCLNEFQEDDSLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVD---ASPPVH 183
           DCSVCL EF + +SLRLLP+CSHAFH QCIDTWLKSHSNCPLCRANI  V    ASP   
Sbjct: 156 DCSVCLGEFSDGESLRLLPRCSHAFHQQCIDTWLKSHSNCPLCRANITFVTVGLASPEPE 215

Query: 184 --LPASNAYPITNETMP-----ETSQTRDPEAVSQDSERSLRSDCGKNSVRAFSDLGVPE 243
              P       T+E +      E       EAVS+ S      D  K+           E
Sbjct: 216 GCAPGETGGDNTHEVVVVMDGLENLCEEQQEAVSRASTADDDHD-AKDVAEGM------E 275

Query: 244 KRDTVIELRDGELQQIRRSISMDHCSQNHIIIADVLRLN-DDEYEAGS-----SGDVGSS 303
           + +   E+R+      R + S D    N + IADVL+ + +DE  A       +G  G+S
Sbjct: 276 EANGAAEIREEGSPPKRGASSFDLHRDNRMCIADVLQESMEDELTAARESGLLAGGAGTS 335

Query: 304 KCSVGEDSRS----SHRKTILHCVMSPVSIKRSFSGGR 306
           +   GE+S+     S R   L   M  +  KR  SGGR
Sbjct: 336 RRCHGENSKGRGGRSRRALQLQDAMEALPGKRLPSGGR 366

[Close]
BLAST of Carg24526 vs. Swiss-Prot
Match: sp|Q9LF64|ATL52_ARATH (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.4e-39
Identity = 121/302 (40.07%), Postives = 166/302 (54.97%), Query Frame = 0 

Query: 38  SYYTIISKYCGNTNRLFGTGNHDPNEEFEDNHNPT--LHEPWHVATN--GLDEAMVKSIT 97
           SYYT+ISKYC   ++         +E    NHN          ++TN  GL+E+M+KSIT
Sbjct: 73  SYYTLISKYCHRHHQT------SSSETLNLNHNGEGFFSSTQRISTNGDGLNESMIKSIT 132

Query: 98  VCKYKRGDGLVEGSDCSVCLNEFQEDDSLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRAN 157
           V KYK GDG V+GSDCSVCL+EF+E++SLRLLPKC+HAFHL CIDTWLKSHSNCPLCRA 
Sbjct: 133 VYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAF 192

Query: 158 IVSVDASPPVHLPASNAYPITNETMPE----------------TSQTRDPEAVSQDSERS 217
           +  V+ +P   +  + +  + N++                    SQT D ++V    +  
Sbjct: 193 VTGVN-NPTASVGQNVSVVVANQSNSAHQTGSVSEINLNLAGYESQTGDFDSVVVIEDLE 252

Query: 218 LRSDCGKNSVRAFSDLGVPEKRDTVIELRDGELQQIRRSISMDHCSQNHIIIADVLRLND 277
           +    G  +  A S+L +PE+R    E +D +   IRRS+S++  S   + IADVLR  +
Sbjct: 253 I----GSRNSDARSELQLPEERR---ETKDEDSLPIRRSVSLN--SGVVVSIADVLREIE 312

Query: 278 DEYEAGSSGDVGSSKCSVGEDSRSSHRKTILHCVMSPVS------IKRSFSGGRFSLIRH 314
           D  E G SG VG+S+    E+      KTI     +  S        RS S GRF   R+
Sbjct: 313 D--EEGESGGVGTSQRR--EEGEDGDGKTIPPTEANQRSGGVSGFFVRSLSTGRFIFSRY 354

[Close]
BLAST of Carg24526 vs. Swiss-Prot
Match: sp|P0C041|ATL53_ARATH (Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 PE=3 SV=2)

HSP 1 Score: 149.4 bits (376), Expect = 6.6e-35
Identity = 83/172 (48.26%), Postives = 108/172 (62.79%), Query Frame = 0 

Query: 5   PPPL---EFPDDD--SSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGN--TNRLFG-T 64
           PPP+   +F +D   S+PN SPLVIAI GI A+AFLL +YYT++SKYC N  TN     +
Sbjct: 39  PPPISYEQFLNDGVASNPNLSPLVIAIFGIFATAFLLAAYYTLVSKYCANDTTNEAASES 98

Query: 65  GNHDPNEEFEDNHNPTLHEPWHV--ATNGLDEAMVKSITVCKYKRGDG--LVEGSDCSVC 124
           G  D   +          +P+ +  +T GLD+ ++K I   K K+      + G+DCS+C
Sbjct: 99  GRSDIILDVNSPERGDQDDPFALESSTAGLDDTLIKKIGFFKLKKHQNGFKINGTDCSIC 158

Query: 125 LNEFQEDDSLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVH 165
           L EF ED+SLRLLPKC+H FH+ CID WLKSHSNCPLCRA I+      P H
Sbjct: 159 LGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKIIVPTTQQPEH 210

[Close]
BLAST of Carg24526 vs. Swiss-Prot
Match: sp|Q8LFY8|ATL54_ARATH (RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2)

HSP 1 Score: 146.7 bits (369), Expect = 4.3e-34
Identity = 79/201 (39.30%), Postives = 112/201 (55.72%), Query Frame = 0 

Query: 11  PDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRL----FGTGNHDPN---- 70
           P  DSS +   + I  I     A LL  ++ +   +  + NR+    + + N D +    
Sbjct: 72  PSQDSSSSLDAISIITITGAVLAILLTGFFLVAKFFSDSVNRVNQGTYQSDNEDNDTVME 131

Query: 71  EEFEDNHNPTLHEPWHVATNGLDEAMVKSITVCKYKRGDGLVEGSDCSVCLNEFQEDDSL 130
           EEF+D      H  W + T GL ++++ SIT+C YKRGDGL+E +DC VCLNEF+ED+SL
Sbjct: 132 EEFQDREQVD-HPIWLIRTTGLQQSIINSITICNYKRGDGLIERTDCPVCLNEFEEDESL 191

Query: 131 RLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVH------LPASNAYPITNE 190
           RLLPKC+HAFH+ CIDTWL SH+NCPLCRA I  +  + P +       P  +   + N+
Sbjct: 192 RLLPKCNHAFHISCIDTWLSSHTNCPLCRAGIAMISVTTPRYSGPVEVTPGGSGSHLEND 251

Query: 191 TMPETSQTRDPEAVSQDSERS 198
            + E         V  D + S
Sbjct: 252 GVDEEDHGEIENRVDSDFKES 271

[Close]
BLAST of Carg24526 vs. Swiss-Prot
Match: sp|Q9SRQ8|ATL51_ARATH (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2)

HSP 1 Score: 140.2 bits (352), Expect = 4.0e-32
Identity = 93/191 (48.69%), Postives = 118/191 (61.78%), Query Frame = 0 

Query: 83  GLDEAMVKSITVCKYKRGDGLVEGSDCSVCLNEFQEDDSLRLLPKCSHAFHLQCIDTWLK 142
           GLDE+++KSITV KY++ DG VE SDCSVCL+EFQE++SLRLLPKC+HAFH+ CIDTWLK
Sbjct: 133 GLDESLIKSITVYKYRKMDGFVESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLK 192

Query: 143 SHSNCPLCRANIVSVDASPPVHLPASNAYPITNETMPETSQTRDPEAVSQDSERSLRSDC 202
           SHSNCPLCRA IV+  A   V L  +N   +T      T        V+ D E S   + 
Sbjct: 193 SHSNCPLCRAFIVTSSAVEIVDL--TNQQIVTENNSISTGDD-SVVVVNLDLENSRSRN- 252

Query: 203 GKNSVRAFSDLGVPEKRDTVIELRDGELQQIRRSISMDHCSQNHIIIADVLR-LNDDEYE 262
              +V   S    PE +D+    RDGE    RRS S+ +     + IAD+LR + DDE  
Sbjct: 253 --ETVNEGSTPKPPEMQDS----RDGE---ERRSASL-NSGGGVVSIADILREIEDDEES 305

Query: 263 AGSSGDVGSSK 273
           AG    VG+S+
Sbjct: 313 AG----VGTSR 305

[Close]
BLAST of Carg24526 vs. TrEMBL
Match: tr|A0A1S4E5H2|A0A1S4E5H2_CUCME (E3 ubiquitin-protein ligase Os04g0590900-like OS=Cucumis melo OX=3656 GN=LOC103503554 PE=4 SV=1)

HSP 1 Score: 533.1 bits (1372), Expect = 4.3e-148
Identity = 266/325 (81.85%), Postives = 290/325 (89.23%), Query Frame = 0 

Query: 1   MLSPPPPLEFPDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRLFGTGNHD 60
           M SPPPPLEFPDD+S PNFSPLVIAIIGILASA LL++YYTIISKYCGNTNRL GTGN+D
Sbjct: 37  MFSPPPPLEFPDDNSGPNFSPLVIAIIGILASALLLVTYYTIISKYCGNTNRLSGTGNYD 96

Query: 61  PNEEFEDNHNPTLHEPWHVATNGLDEAMVKSITVCKYKRGDGLVEGSDCSVCLNEFQEDD 120
           P+EE+EDNHNPTLHEPWHVAT GLDEA++KSITVCKYKRGDGLVEGSDCSVCL+EFQED+
Sbjct: 97  PSEEYEDNHNPTLHEPWHVATTGLDEALIKSITVCKYKRGDGLVEGSDCSVCLSEFQEDE 156

Query: 121 SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPASNAYPITNETMPE 180
           SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANI+S++A  PV LPAS AYPITNET+PE
Sbjct: 157 SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIISINAGSPVQLPASTAYPITNETVPE 216

Query: 181 TSQTRDPEAVSQDSERSLRSDCGKNSVRAFSDLGVPEKRDTVIELRDGELQQIRRSISMD 240
           +SQ  D EAVS DS +S  ++  KNSVRAFSDLG  EKRDT IELRDG LQQIRRSISMD
Sbjct: 217 SSQDNDHEAVSLDSGQSFSNEDAKNSVRAFSDLGNLEKRDTTIELRDGRLQQIRRSISMD 276

Query: 241 HCSQNHIIIADVLRLNDDEY----EAGSSGDVGSSKCSVGEDSRSSHRKTILHCVMSPVS 300
           HCSQN +IIADVLRLN+DE+    EAGSSGDVGSSK SVGEDSRSSHRK ILHCVMSPVS
Sbjct: 277 HCSQNRLIIADVLRLNEDEFGGIDEAGSSGDVGSSKHSVGEDSRSSHRKRILHCVMSPVS 336

Query: 301 IKRSFSGGRFSLIRHGKEQREIARV 322
           +KRSFS GR SL +HG+E R IA V
Sbjct: 337 MKRSFSSGRLSLTKHGREHRGIAPV 361

[Close]
BLAST of Carg24526 vs. TrEMBL
Match: tr|A0A0A0LH71|A0A0A0LH71_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G901190 PE=4 SV=1)

HSP 1 Score: 531.6 bits (1368), Expect = 1.3e-147
Identity = 267/325 (82.15%), Postives = 291/325 (89.54%), Query Frame = 0 

Query: 1   MLSPPPPLEFPDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRLFGTGNHD 60
           M SPPPPLEFP D+S P+FSPLVIAIIGILASAFLL++YYTIISKYCGNTNRL GTGNHD
Sbjct: 37  MFSPPPPLEFP-DNSGPHFSPLVIAIIGILASAFLLVTYYTIISKYCGNTNRLSGTGNHD 96

Query: 61  PNEEFEDNHNPTLHEPWHVATNGLDEAMVKSITVCKYKRGDGLVEGSDCSVCLNEFQEDD 120
           P+EE+EDNHNPT HEPWHVAT GLDEA++KSITVCKYKR DGLVEGSDCSVCL+EFQED+
Sbjct: 97  PSEEYEDNHNPTFHEPWHVATTGLDEALIKSITVCKYKREDGLVEGSDCSVCLSEFQEDE 156

Query: 121 SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPASNAYPITNETMPE 180
           SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANI+S++A  PV LPAS AYPITNET+PE
Sbjct: 157 SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIISINAGSPVQLPASTAYPITNETVPE 216

Query: 181 TSQTRDPEAVSQDSERSLRSDCGKNSVRAFSDLGVPEKRDTVIELRDGELQQIRRSISMD 240
           TSQ  D EAVS DS +S  ++ GKNSVRAFSDLG  EKRDT+IELRDG LQQIRRSISMD
Sbjct: 217 TSQDNDYEAVSLDSGQSFSNEDGKNSVRAFSDLGNLEKRDTIIELRDGRLQQIRRSISMD 276

Query: 241 HCSQNHIIIADVLRLNDDEY----EAGSSGDVGSSKCSVGEDSRSSHRKTILHCVMSPVS 300
           HCSQNHIIIADVLRLN+D++    EAGSSGDVGSSK SVGEDSRSSHRK ILHCVMSPVS
Sbjct: 277 HCSQNHIIIADVLRLNEDDFGGIDEAGSSGDVGSSKHSVGEDSRSSHRKRILHCVMSPVS 336

Query: 301 IKRSFSGGRFSLIRHGKEQREIARV 322
           +KRSFS GR SL +HG+E R IA V
Sbjct: 337 MKRSFSSGRLSLTKHGREHRGIAPV 360

[Close]
BLAST of Carg24526 vs. TrEMBL
Match: tr|A0A2P4N544|A0A2P4N544_QUESU (E3 ubiquitin-protein ligase OS=Quercus suber OX=58331 GN=CFP56_26229 PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 8.8e-101
Identity = 196/328 (59.76%), Postives = 240/328 (73.17%), Query Frame = 0 

Query: 1   MLSPPPPLEFPDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRLFGTGNHD 60
           ML PPPP EFPDD+SSPNFSPLVIAIIGILASAFLL+SYYTIISKYCGN +      +H+
Sbjct: 1   MLPPPPPFEFPDDNSSPNFSPLVIAIIGILASAFLLVSYYTIISKYCGNPDSARSREDHE 60

Query: 61  PNEEFEDNHNPTLHEPWHVATNGLDEAMVKSITVCKYKRGDGLVEGSDCSVCLNEFQEDD 120
            NEE E+N NP+LHEPWH+ T GLDEA++KSI V KYK+G+GLVEG+DCSVCL+EF+ED+
Sbjct: 61  SNEELEENQNPSLHEPWHIVTTGLDEALIKSIAVYKYKKGEGLVEGTDCSVCLSEFEEDE 120

Query: 121 SLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPAS-NAYPITNETMP 180
           S+RLLPKCSHAFHL CIDTWLKSH+NCPLCRANIVS +A+ P+ LPA     P TNET+P
Sbjct: 121 SIRLLPKCSHAFHLPCIDTWLKSHANCPLCRANIVSFNAT-PIPLPAPVTELPSTNETLP 180

Query: 181 ETSQTRDPEAVSQD------SERSLRSD-CGKNSVRAFSDLGVPEKRDTVIELRDGELQQ 240
            +    +   ++QD       E S+R D   K+  RAFSDLG  E+RDT+IE+RDG    
Sbjct: 181 ISQPENENITLAQDIAGGVTEEESVRGDIVPKSPFRAFSDLGNSEERDTIIEIRDGGYHH 240

Query: 241 IRRSISMDHCSQNHIIIADVLRLN--DDEYEAGSSGDVGSSKCSVGEDSRSSHRKTILHC 300
           IRRS SMD   Q+ + +AD+L +N  +D      S +  SSK   GE  +SSHR  +LH 
Sbjct: 241 IRRSFSMDLSCQSRVSVADILCMNQGEDVQVEECSAEASSSKQLAGEVGKSSHRNRVLHF 300

Query: 301 VMSPVSIKRSFSGGRFSLIRHGKEQREI 319
           VMSP+++KR FS GRF L RHG+    I
Sbjct: 301 VMSPIAMKRQFSSGRFFLTRHGRRPHAI 327

[Close]
BLAST of Carg24526 vs. TrEMBL
Match: tr|A0A061GAA2|A0A061GAA2_THECC (RING/U-box superfamily protein, putative OS=Theobroma cacao OX=3641 GN=TCM_015695 PE=4 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 2.4e-98
Identity = 194/326 (59.51%), Postives = 238/326 (73.01%), Query Frame = 0 

Query: 4   PPPPLEFPDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRLFGTGNHDPNE 63
           PPPP+EFPDDDS PNFSPLVIAIIGILASAFLL+SYYTIISKYCGN +      NHDP E
Sbjct: 38  PPPPIEFPDDDSGPNFSPLVIAIIGILASAFLLVSYYTIISKYCGNVDPSRRRENHDPGE 97

Query: 64  EFEDNHNPTLHEPWHVATNGLDEAMVKSITVCKYKRGDGLVEGSDCSVCLNEFQEDDSLR 123
             EDNH+P++HEPW  +T GLDEA++KSITVCKYK+GDGL+EG+DCSVCL+EFQED+SLR
Sbjct: 98  VLEDNHSPSVHEPWQTSTTGLDEALIKSITVCKYKKGDGLIEGTDCSVCLSEFQEDESLR 157

Query: 124 LLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPASNAYPITNETMPETSQ 183
           LLPKCSHAFH+ CIDTWL+SHSNCPLCRANI+ + ASP    PA    P  NE++ +   
Sbjct: 158 LLPKCSHAFHVHCIDTWLRSHSNCPLCRANIIFISASPLPLPPALTESPPGNESLQDRQP 217

Query: 184 -TRDPEAVSQDSER-------SLRSDCG---KNSVRAFSDLGVPEKRDTVIELRDGELQQ 243
            T +  A +QDS R         +SD     K   RAFSDLG  + RD+VIE+R+   QQ
Sbjct: 218 VTNEYAAAAQDSGRRSMQEVDRFQSDLSRLPKTPSRAFSDLGNAQGRDSVIEIREESYQQ 277

Query: 244 IRRSISMDHCSQNHIIIADVLRLNDDEYEA-----GSSGDVGSSKCSVGEDSRSSHRKTI 303
           +RRS+SMDH  Q+ + +AD+L +N +E         SSG  GSSK S  E S+ S++  +
Sbjct: 278 MRRSVSMDHPCQSQLSVADILHMNQEEDSRVEECHFSSGIAGSSKQS-AEGSKLSNKMRV 337

Query: 304 LHCVMSPVSIKRSFSGGRFSLIRHGK 314
           LHCVM+PV++KRSFS GRF L R G+
Sbjct: 338 LHCVMNPVAMKRSFSSGRFFLTRQGR 362

[Close]
BLAST of Carg24526 vs. TrEMBL
Match: tr|A0A2N9G0W8|A0A2N9G0W8_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24289 PE=4 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 9.1e-98
Identity = 198/334 (59.28%), Postives = 239/334 (71.56%), Query Frame = 0 

Query: 4   PPPPLEFPDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRLFGTGNHDPNE 63
           PPPP EFPDD+SSPNFSPLVIAIIGILASAFLL+SYYTIISKYCGN +      NHD NE
Sbjct: 25  PPPPFEFPDDNSSPNFSPLVIAIIGILASAFLLVSYYTIISKYCGNRDS-SRRENHDSNE 84

Query: 64  EFEDNHNPTLHEPWHVATNGLDEAMVKSITVCKYKRGDGLVEGSDCSVCLNEFQEDDSLR 123
           + EDNHNP+LHEPWHVAT GLDEA++KSITVCKYK G+GLVEG+DCSVCL+EF+E++SLR
Sbjct: 85  DLEDNHNPSLHEPWHVATTGLDEALIKSITVCKYKMGEGLVEGTDCSVCLSEFEENESLR 144

Query: 124 LLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASP-PVHLPASNAYPITNETMPETS 183
           LLPKCSHAFHL CIDTWLKSHSNCPLCRANIVS +A+P P+  P     P +NET+P + 
Sbjct: 145 LLPKCSHAFHLPCIDTWLKSHSNCPLCRANIVSFNATPLPLPAPVIE-LPSSNETLPASE 204

Query: 184 QTRDPEAVSQDSERSLR-----------SDCGKNSVRAFSDLGVPEKRDTVIELRDGEL- 243
              +   ++QD ER +                K+ +RAFSDLG  E+RD +IE+RDG   
Sbjct: 205 SENNNITLAQDFERGVSVTLTDEELNHGDIVPKSPLRAFSDLGNLEERDNIIEIRDGGYH 264

Query: 244 QQIRRSISMDHCSQNHIIIADVLRLN---DDEYEAGSSGDVGSSKCSVGEDSRSSHRKTI 303
           Q IRRS SMD   Q H+ +AD+L +N   D + E  S+   GSSK    E  +SS+R  +
Sbjct: 265 QHIRRSFSMDLSCQTHLSVADILCMNQAEDVQVEECSADHAGSSKQLPPEIGKSSNRNKV 324

Query: 304 LHCVMSPVSIKRSFSGGRFSLIRHGKEQREIARV 322
           LH VMSP+++KR FS GR  L  HG+    I  V
Sbjct: 325 LHFVMSPIAMKRQFSSGRLFLTSHGRRSHTIIPV 356

The following BLAST results are available for this feature:
BLAST of Carg24526 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023553748.17.9e-17897.20RING-H2 finger protein ATL52-like [Cucurbita pepo subsp. pepo][more]
XP_022967441.11.3e-17797.20RING-H2 finger protein ATL52-like [Cucurbita maxima][more]
XP_016903486.16.5e-14881.85PREDICTED: E3 ubiquitin-protein ligase Os04g0590900-like [Cucumis melo][more]
XP_011652647.11.9e-14782.15PREDICTED: E3 ubiquitin-protein ligase Os04g0590900-like [Cucumis sativus] >KGN6... [more]
XP_022159853.12.6e-14479.52RING-H2 finger protein ATL52-like isoform X1 [Momordica charantia][more]
BLAST of Carg24526 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G17600.11.9e-4040.07RING/U-box superfamily protein[more]
AT4G17905.13.7e-3648.26RING/U-box superfamily protein[more]
AT1G72220.12.4e-3539.30RING/U-box superfamily protein[more]
AT3G03550.12.2e-3348.69RING/U-box superfamily protein[more]
AT4G33565.11.0e-3036.63RING/U-box superfamily protein[more]
BLAST of Carg24526 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q7XLY8|ATL41_ORYSJ2.3e-4842.31E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=3994... [more]
sp|Q9LF64|ATL52_ARATH3.4e-3940.07RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1[more]
sp|P0C041|ATL53_ARATH6.6e-3548.26Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 P... [more]
sp|Q8LFY8|ATL54_ARATH4.3e-3439.30RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2[more]
sp|Q9SRQ8|ATL51_ARATH4.0e-3248.69RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2[more]
BLAST of Carg24526 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4E5H2|A0A1S4E5H2_CUCME4.3e-14881.85E3 ubiquitin-protein ligase Os04g0590900-like OS=Cucumis melo OX=3656 GN=LOC1035... [more]
tr|A0A0A0LH71|A0A0A0LH71_CUCSA1.3e-14782.15Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G901190 PE=4 SV=1[more]
tr|A0A2P4N544|A0A2P4N544_QUESU8.8e-10159.76E3 ubiquitin-protein ligase OS=Quercus suber OX=58331 GN=CFP56_26229 PE=4 SV=1[more]
tr|A0A061GAA2|A0A061GAA2_THECC2.4e-9859.51RING/U-box superfamily protein, putative OS=Theobroma cacao OX=3641 GN=TCM_01569... [more]
tr|A0A2N9G0W8|A0A2N9G0W8_FAGSY9.1e-9859.28Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24289 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24526-RACarg24526-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 109..150
e-value: 6.2E-8
score: 42.4
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 108..151
e-value: 3.1E-14
score: 52.9
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 109..151
score: 13.05
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 83..160
e-value: 4.5E-22
score: 79.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 172..202
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 172..188
NoneNo IPR availablePANTHERPTHR14155:SF101SUBFAMILY NOT NAMEDcoord: 2..181
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 2..181
NoneNo IPR availableCDDcd16461RING-H2_EL5_likecoord: 108..151
e-value: 1.56843E-16
score: 71.1871
NoneNo IPR availableSUPERFAMILYSSF57850RING/U-boxcoord: 103..159

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg24526Csa3G901190Cucumber (Chinese Long) v2carcuB0983
Carg24526MELO3C003420Melon (DHL92) v3.5.1carmeB0949
Carg24526CSPI03G46600Wild cucumber (PI 183967)carcpiB1006
Carg24526Cucsa.313020Cucumber (Gy14) v1carcgyB1087
Carg24526CmaCh02G016170Cucurbita maxima (Rimu)carcmaB1340
Carg24526CmaCh19G002310Cucurbita maxima (Rimu)carcmaB1339
Carg24526CmoCh11G014770Cucurbita moschata (Rifu)carcmoB1299
Carg24526CmoCh19G002460Cucurbita moschata (Rifu)carcmoB1301
Carg24526CmoCh02G016620Cucurbita moschata (Rifu)carcmoB1302
Carg24526LsiUNG000310Bottle gourd (USVL1VR-Ls)carlsiB887
Carg24526Lsi03G007300Bottle gourd (USVL1VR-Ls)carlsiB888
Carg24526Cp4.1LG15g02080Cucurbita pepo (Zucchini)carcpeB1344
Carg24526Cp4.1LG05g00050Cucurbita pepo (Zucchini)carcpeB1346
Carg24526CsGy3G044050Cucumber (Gy14) v2carcgybB0956
Carg24526MELO3C003420.2Melon (DHL92) v3.6.1carmedB0955
Carg24526CsaV3_3G049060Cucumber (Chinese Long) v3carcucB1011
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg24526Carg26463Silver-seed gourdcarcarB400
Carg24526Carg08844Silver-seed gourdcarcarB612
The following block(s) are covering this gene:
GeneOrganismBlock
Carg24526Wax gourdcarwgoB1139
Carg24526Silver-seed gourdcarcarB487
Carg24526Cucumber (Gy14) v2carcgybB0957
Carg24526Cucumber (Gy14) v1carcgyB1088
Carg24526Cucurbita maxima (Rimu)carcmaB1338
Carg24526Cucurbita moschata (Rifu)carcmoB1300
Carg24526Cucurbita pepo (Zucchini)carcpeB1343
Carg24526Wild cucumber (PI 183967)carcpiB1007
Carg24526Cucumber (Chinese Long) v2carcuB0984
Carg24526Cucumber (Chinese Long) v3carcucB1012
Carg24526Bottle gourd (USVL1VR-Ls)carlsiB889
Carg24526Melon (DHL92) v3.5.1carmeB0950
Carg24526Melon (DHL92) v3.6.1carmedB0956
Carg24526Watermelon (Charleston Gray)carwcgB0948
Carg24526Watermelon (Charleston Gray)carwcgB0949
Carg24526Watermelon (97103) v1carwmB0974
Carg24526Watermelon (97103) v1carwmB0976
Carg24526Watermelon (97103) v2carwmbB1023
Carg24526Watermelon (97103) v2carwmbB1025