Carg24245 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24245
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transcription repressor kan1
Location	Cucurbita_argyrosperma_scaffold_191 : 222306 .. 223154 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCTTAGAAGGTGTTTTTATTGAACCTTCTTCAACCCCACTTCCTGATCTCTCTCTTCAAATCAGCCCTCCAAATGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCCTCTTCAATTAGAACCCTCAGCCATGGATTTGCACAAACAAGTTTTGATCTTTTGATTCAAAGAAACGACCCTCGAGCTCACACCGAGCTCTCTCTAGGAACCAACAACAACAACAACAACAATTCCCTTAGCGGAGTGCCACTGAATAATCCAACACCGCCTCCTCGTCTTCGAGGGCTTTCGATGTTCGACATATCATCCGACGGGTTGCAACCGATCAAAGGGATTCCCGTGTATCACAATCGTCCATTTTCATTTTTGGGTGTGGATCAAAAAGATCATTATTTCCACCATCAATTTCCATCATCTTGCTTCTTCCCAAATTACTCGAACTCGAACGGAGTTGTTCAAATGGGTTATCATCATCATCGAGGAATCGGAGGAAATAACTCGTCTCCGAGGTTCAACAATGGAGTTGTTTCTATAGAAGCAGTTAAATCTTTGAACTATAATAATCATAGTAATTATAGTAATGCAGCTTCTTCTTCTTCTCATGTTTGTTCTCATGGAATGATGATGAGATCCAGATTTTTGCAGAAGCTTCCTGCAAAACGAAGCATGAGGGCTCCTAGAATGCGATGGACTACCTCCTTACACGCTCGCTTCGTTCACGCCGTCGAACATCTCGGCGGCCATGAAAGTAAACAACCAAAAAAATCACCTTTTTTCTTCTTTATTGTTCGATTTGATCTTCTCAACATGTTTCAATAA

mRNA sequence

ATGCCCTTAGAAGGTGTTTTTATTGAACCTTCTTCAACCCCACTTCCTGATCTCTCTCTTCAAATCAGCCCTCCAAATGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCCTCTTCAATTAGAACCCTCAGCCATGGATTTGCACAAACAAGTTTTGATCTTTTGATTCAAAGAAACGACCCTCGAGCTCACACCGAGCTCTCTCTAGGAACCAACAACAACAACAACAACAATTCCCTTAGCGGAGTGCCACTGAATAATCCAACACCGCCTCCTCGTCTTCGAGGGCTTTCGATGTTCGACATATCATCCGACGGGTTGCAACCGATCAAAGGGATTCCCGTGTATCACAATCGTCCATTTTCATTTTTGGGTGTGGATCAAAAAGATCATTATTTCCACCATCAATTTCCATCATCTTGCTTCTTCCCAAATTACTCGAACTCGAACGGAGTTGTTCAAATGGGTTATCATCATCATCGAGGAATCGGAGGAAATAACTCGTCTCCGAGGTTCAACAATGGAGTTGTTTCTATAGAAGCAGTTAAATCTTTGAACTATAATAATCATAGTAATTATAGTAATGCAGCTTCTTCTTCTTCTCATGTTTGTTCTCATGGAATGATGATGAGATCCAGATTTTTGCAGAAGCTTCCTGCAAAACGAAGCATGAGGGCTCCTAGAATGCGATGGACTACCTCCTTACACGCTCGCTTCGTTCACGCCGTCGAACATCTCGGCGGCCATGAAAGTAAACAACCAAAAAAATCACCTTTTTTCTTCTTTATTGTTCGATTTGATCTTCTCAACATGTTTCAATAA

Coding sequence (CDS)

ATGCCCTTAGAAGGTGTTTTTATTGAACCTTCTTCAACCCCACTTCCTGATCTCTCTCTTCAAATCAGCCCTCCAAATGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCCTCTTCAATTAGAACCCTCAGCCATGGATTTGCACAAACAAGTTTTGATCTTTTGATTCAAAGAAACGACCCTCGAGCTCACACCGAGCTCTCTCTAGGAACCAACAACAACAACAACAACAATTCCCTTAGCGGAGTGCCACTGAATAATCCAACACCGCCTCCTCGTCTTCGAGGGCTTTCGATGTTCGACATATCATCCGACGGGTTGCAACCGATCAAAGGGATTCCCGTGTATCACAATCGTCCATTTTCATTTTTGGGTGTGGATCAAAAAGATCATTATTTCCACCATCAATTTCCATCATCTTGCTTCTTCCCAAATTACTCGAACTCGAACGGAGTTGTTCAAATGGGTTATCATCATCATCGAGGAATCGGAGGAAATAACTCGTCTCCGAGGTTCAACAATGGAGTTGTTTCTATAGAAGCAGTTAAATCTTTGAACTATAATAATCATAGTAATTATAGTAATGCAGCTTCTTCTTCTTCTCATGTTTGTTCTCATGGAATGATGATGAGATCCAGATTTTTGCAGAAGCTTCCTGCAAAACGAAGCATGAGGGCTCCTAGAATGCGATGGACTACCTCCTTACACGCTCGCTTCGTTCACGCCGTCGAACATCTCGGCGGCCATGAAAGTAAACAACCAAAAAAATCACCTTTTTTCTTCTTTATTGTTCGATTTGATCTTCTCAACATGTTTCAATAA

Protein sequence

MPLEGVFIEPSSTPLPDLSLQISPPNVSSSSSSSSSSSSSSSSSSSSSIRTLSHGFAQTSFDLLIQRNDPRAHTELSLGTNNNNNNNSLSGVPLNNPTPPPRLRGLSMFDISSDGLQPIKGIPVYHNRPFSFLGVDQKDHYFHHQFPSSCFFPNYSNSNGVVQMGYHHHRGIGGNNSSPRFNNGVVSIEAVKSLNYNNHSNYSNAASSSSHVCSHGMMMRSRFLQKLPAKRSMRAPRMRWTTSLHARFVHAVEHLGGHESKQPKKSPFFFFIVRFDLLNMFQ

Homology

[Close]

BLAST of Carg24245 vs. NCBI nr
Match: XP_022934719.1 (transcription repressor KAN1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 414.8 bits (1065), Expect = 2.3e-112
Identity = 254/264 (96.21%), Postives = 254/264 (96.21%), Query Frame = 0


Query: 1   MPLEGVFIEPSSTPLPDLSLQISPPNVXXXXXXXXXXXXXXXXXXXXXXRTLSHGFAQTS 60
           MPLEGVFIEPSSTPLPDLSLQISPPNV       XXXXXXXXXXXXXXXRTLSHGFAQTS
Sbjct: 1   MPLEGVFIEPSSTPLPDLSLQISPPNV-------XXXXXXXXXXXXXXXRTLSHGFAQTS 60

Query: 61  FDLLIQRNDPRAHTELSLGXXXXXXXXXXXGVPLNNPTPPPRLRGLSMFDISSDGLQPIK 120
           FDLLIQRNDPRAHTELSLGXXXXXXXXXXXGVPLNNPTPPPRLRGLSMFDISSDGLQPIK
Sbjct: 61  FDLLIQRNDPRAHTELSLGXXXXXXXXXXXGVPLNNPTPPPRLRGLSMFDISSDGLQPIK 120

Query: 121 GIPVYHNRPFSFLGVDQKDHYFHHQFPSSCFFPNYSNSNGVVQMGYHHHRGIGGNNSSPR 180
           GIPVYHNRPFSFLGVDQKDHYFHHQFPSSCFFPNYSNSNGVVQMGYHHHRGIGGNNSSPR
Sbjct: 121 GIPVYHNRPFSFLGVDQKDHYFHHQFPSSCFFPNYSNSNGVVQMGYHHHRGIGGNNSSPR 180

Query: 181 FNNGVVSIEAVXXXXXXXXXXXXXXXXXXXHVCSHGMMMRSRFLQKLPAKRSMRAPRMRW 240
           FNNGVVSIEAVXXXXXXXXXXXXXXXXXXXHVCSHGMMMRSRFLQKLPAKRSMRAPRMRW
Sbjct: 181 FNNGVVSIEAVXXXXXXXXXXXXXXXXXXXHVCSHGMMMRSRFLQKLPAKRSMRAPRMRW 240

Query: 241 TTSLHARFVHAVEHLGGHESKQPK 265
           TTSLHARFVHAVEHLGGHE   PK
Sbjct: 241 TTSLHARFVHAVEHLGGHERATPK 257

[Close]

BLAST of Carg24245 vs. NCBI nr
Match: XP_022934718.1 (transcription repressor KAN1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 414.8 bits (1065), Expect = 2.3e-112
Identity = 254/264 (96.21%), Postives = 254/264 (96.21%), Query Frame = 0


Query: 1   MPLEGVFIEPSSTPLPDLSLQISPPNVXXXXXXXXXXXXXXXXXXXXXXRTLSHGFAQTS 60
           MPLEGVFIEPSSTPLPDLSLQISPPNV       XXXXXXXXXXXXXXXRTLSHGFAQTS
Sbjct: 1   MPLEGVFIEPSSTPLPDLSLQISPPNV-------XXXXXXXXXXXXXXXRTLSHGFAQTS 60

Query: 61  FDLLIQRNDPRAHTELSLGXXXXXXXXXXXGVPLNNPTPPPRLRGLSMFDISSDGLQPIK 120
           FDLLIQRNDPRAHTELSLGXXXXXXXXXXXGVPLNNPTPPPRLRGLSMFDISSDGLQPIK
Sbjct: 61  FDLLIQRNDPRAHTELSLGXXXXXXXXXXXGVPLNNPTPPPRLRGLSMFDISSDGLQPIK 120

Query: 121 GIPVYHNRPFSFLGVDQKDHYFHHQFPSSCFFPNYSNSNGVVQMGYHHHRGIGGNNSSPR 180
           GIPVYHNRPFSFLGVDQKDHYFHHQFPSSCFFPNYSNSNGVVQMGYHHHRGIGGNNSSPR
Sbjct: 121 GIPVYHNRPFSFLGVDQKDHYFHHQFPSSCFFPNYSNSNGVVQMGYHHHRGIGGNNSSPR 180

Query: 181 FNNGVVSIEAVXXXXXXXXXXXXXXXXXXXHVCSHGMMMRSRFLQKLPAKRSMRAPRMRW 240
           FNNGVVSIEAVXXXXXXXXXXXXXXXXXXXHVCSHGMMMRSRFLQKLPAKRSMRAPRMRW
Sbjct: 181 FNNGVVSIEAVXXXXXXXXXXXXXXXXXXXHVCSHGMMMRSRFLQKLPAKRSMRAPRMRW 240

Query: 241 TTSLHARFVHAVEHLGGHESKQPK 265
           TTSLHARFVHAVEHLGGHE   PK
Sbjct: 241 TTSLHARFVHAVEHLGGHERATPK 257

[Close]

BLAST of Carg24245 vs. NCBI nr
Match: XP_022934720.1 (transcription repressor KAN1-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 371.3 bits (952), Expect = 2.9e-99
Identity = 219/264 (82.95%), Postives = 219/264 (82.95%), Query Frame = 0


Query: 1   MPLEGVFIEPSSTPLPDLSLQISPPNVXXXXXXXXXXXXXXXXXXXXXXRTLSHGFAQTS 60
           MPLEGVFIEPSSTPLPDLSLQISPPNV       XXXXXXXXXXXXXXXRTLSHGFAQTS
Sbjct: 1   MPLEGVFIEPSSTPLPDLSLQISPPNV-------XXXXXXXXXXXXXXXRTLSHGFAQTS 60

Query: 61  FDLLIQRNDPRAHTELSLGXXXXXXXXXXXGVPLNNPTPPPRLRGLSMFDISSDGLQPIK 120
           FDLLIQRNDPRAHTELSLGXXXXXXXXXXXGVPLNNPTPPPRLRGLSMFDISSDGLQPIK
Sbjct: 61  FDLLIQRNDPRAHTELSLGXXXXXXXXXXXGVPLNNPTPPPRLRGLSMFDISSDGLQPIK 120

Query: 121 GIPVYHNRPFSFLGVDQKDHYFHHQFPSSCFFPNYSNSNGVVQMGYHHHRGIGGNNSSPR 180
           GIPVYHNRPFSFLGVDQKDHYFHHQFPSSCFFPNYSNSNGVVQMGYHHHRGIGGNNSSPR
Sbjct: 121 GIPVYHNRPFSFLGVDQKDHYFHHQFPSSCFFPNYSNSNGVVQMGYHHHRGIGGNNSSPR 180

Query: 181 FNNGVVSIEAVXXXXXXXXXXXXXXXXXXXHVCSHGMMMRSRFLQKLPAKRSMRAPRMRW 240
           FNNGVVSIEA                                   KLPAKRSMRAPRMRW
Sbjct: 181 FNNGVVSIEA-----------------------------------KLPAKRSMRAPRMRW 222

Query: 241 TTSLHARFVHAVEHLGGHESKQPK 265
           TTSLHARFVHAVEHLGGHE   PK
Sbjct: 241 TTSLHARFVHAVEHLGGHERATPK 222

[Close]

BLAST of Carg24245 vs. NCBI nr
Match: XP_022983637.1 (transcription repressor KAN1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 368.6 bits (945), Expect = 1.9e-98
Identity = 222/264 (84.09%), Postives = 227/264 (85.98%), Query Frame = 0


Query: 1   MPLEGVFIEPSSTPLPDLSLQISPPNVXXXXXXXXXXXXXXXXXXXXXXRTLSHGFAQTS 60
           MPLEGVFIEPSSTPLPDLSLQISPPNV          XXXXXXXXXXX RTLSHGF QTS
Sbjct: 1   MPLEGVFIEPSSTPLPDLSLQISPPNV----------XXXXXXXXXXXIRTLSHGFPQTS 60

Query: 61  FDLLIQRNDPRAHTELSLGXXXXXXXXXXXGVPLNNPTPPPRLRGLSMFDISSDGLQPIK 120
           FDLLIQRNDPRA TELSLG           GVPL+ PT PP LRGLSMFD+SSDGLQPIK
Sbjct: 61  FDLLIQRNDPRARTELSLG---SNNSNSLSGVPLDTPTRPPHLRGLSMFDVSSDGLQPIK 120

Query: 121 GIPVYHNRPFSFLGVDQKDHYFHHQFPSSCFFPNYSNSNGVVQMGYHHHRGIGGNNSSPR 180
           GIPVY+NRPF FLGVDQKD YFHHQFPS CFFPNYSNSNG+VQMGY HHRGIGGNNSS R
Sbjct: 121 GIPVYYNRPFPFLGVDQKDQYFHHQFPSPCFFPNYSNSNGIVQMGY-HHRGIGGNNSSSR 180

Query: 181 FNNGVVSIEAVXXXXXXXXXXXXXXXXXXXHVCSHGMMMRSRFLQKLPAKRSMRAPRMRW 240
           FNNGVVSIEA XXXXXXXXXXXXXXXXXXX VCSHGMMMRSRFLQKLPAKRSMR+PRMRW
Sbjct: 181 FNNGVVSIEAXXXXXXXXXXXXXXXXXXXXDVCSHGMMMRSRFLQKLPAKRSMRSPRMRW 240

Query: 241 TTSLHARFVHAVEHLGGHESKQPK 265
           TTSLHARFVHAVEHLGGHE   PK
Sbjct: 241 TTSLHARFVHAVEHLGGHERATPK 250

[Close]

BLAST of Carg24245 vs. NCBI nr
Match: XP_022983635.1 (transcription repressor KAN1-like isoform X1 [Cucurbita maxima] >XP_022983636.1 transcription repressor KAN1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 368.6 bits (945), Expect = 1.9e-98
Identity = 222/264 (84.09%), Postives = 227/264 (85.98%), Query Frame = 0


Query: 1   MPLEGVFIEPSSTPLPDLSLQISPPNVXXXXXXXXXXXXXXXXXXXXXXRTLSHGFAQTS 60
           MPLEGVFIEPSSTPLPDLSLQISPPNV          XXXXXXXXXXX RTLSHGF QTS
Sbjct: 1   MPLEGVFIEPSSTPLPDLSLQISPPNV----------XXXXXXXXXXXIRTLSHGFPQTS 60

Query: 61  FDLLIQRNDPRAHTELSLGXXXXXXXXXXXGVPLNNPTPPPRLRGLSMFDISSDGLQPIK 120
           FDLLIQRNDPRA TELSLG           GVPL+ PT PP LRGLSMFD+SSDGLQPIK
Sbjct: 61  FDLLIQRNDPRARTELSLG---SNNSNSLSGVPLDTPTRPPHLRGLSMFDVSSDGLQPIK 120

Query: 121 GIPVYHNRPFSFLGVDQKDHYFHHQFPSSCFFPNYSNSNGVVQMGYHHHRGIGGNNSSPR 180
           GIPVY+NRPF FLGVDQKD YFHHQFPS CFFPNYSNSNG+VQMGY HHRGIGGNNSS R
Sbjct: 121 GIPVYYNRPFPFLGVDQKDQYFHHQFPSPCFFPNYSNSNGIVQMGY-HHRGIGGNNSSSR 180

Query: 181 FNNGVVSIEAVXXXXXXXXXXXXXXXXXXXHVCSHGMMMRSRFLQKLPAKRSMRAPRMRW 240
           FNNGVVSIEA XXXXXXXXXXXXXXXXXXX VCSHGMMMRSRFLQKLPAKRSMR+PRMRW
Sbjct: 181 FNNGVVSIEAXXXXXXXXXXXXXXXXXXXXDVCSHGMMMRSRFLQKLPAKRSMRSPRMRW 240

Query: 241 TTSLHARFVHAVEHLGGHESKQPK 265
           TTSLHARFVHAVEHLGGHE   PK
Sbjct: 241 TTSLHARFVHAVEHLGGHERATPK 250

[Close]

BLAST of Carg24245 vs. TAIR10
Match: AT5G16560.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 91.7 bits (226), Expect = 8.0e-19
Identity = 120/276 (43.48%), Postives = 144/276 (52.17%), Query Frame = 0


Query: 1   MPLEGVFIEP----SSTPLPDLSLQISPPNVXXXXXXXXXXXXXXXXXXXXXXRTLSHGF 60
           M +EGVF+E     ++T LPDLSL IS P++         XXXXXXXXXXXXX       
Sbjct: 1   MSMEGVFLEKTKTNTTTTLPDLSLHISLPDI------HQYXXXXXXXXXXXXXXXXXXXX 60

Query: 61  AQTSFDL-LIQRNDPRAHTELSLGXXXXXXXXXXXGVPLNNPTPPPRLRGL-SMFDIS-- 120
              +F+L L   N P A                   +P       P + G+    D S  
Sbjct: 61  XXXNFELSLSHHNHPTAR-------IFHCPDRRTLNLPHQQHYNNPIINGVHQRVDESEI 120

Query: 121 SDGLQPIKGIPVYHNRPFSFLGVDQKDHYFHHQFPSSCFFPNYSNSN----GVVQMGYHH 180
           S+  +PI+GIPVYHNR F F           HQ  SS   P+    +     ++     +
Sbjct: 121 SNLHRPIRGIPVYHNRSFPF-----------HQQNSS--LPSLGGGDMDQISILNSSSGY 180

Query: 181 HRGIGGNNSSPRFNNGVVSIEAVXXXXXXXXXXXXXXXXXXXHVCSHGMMMRSRFLQKLP 240
           +       SSPR     V +   XXXXXXXXXXXXXXXXXXX       M+RSRFL K+P
Sbjct: 181 NNAYRSLQSSPRLKG--VPLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXMIRSRFLPKMP 240

Query: 241 AKRSMRAPRMRWTTSLHARFVHAVEHLGGHESKQPK 265
            KRSMRAPRMRWT+SLHARFVHAVE LGGHE   PK
Sbjct: 241 TKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPK 248

[Close]

BLAST of Carg24245 vs. TAIR10
Match: AT1G32240.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-14
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 220 RSRFLQKLPAKRSMRAPRMRWTTSLHARFVHAVEHLGGHESKQPK 265
           R+RF+ + PAKRSMRAPRMRWTT+LHARFVHAVE LGGHE   PK
Sbjct: 198 RARFMPRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPK 242

[Close]

BLAST of Carg24245 vs. TAIR10
Match: AT4G17695.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 61.6 bits (148), Expect = 8.9e-10
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 226 KLPAKRSMRAPRMRWTTSLHARFVHAVEHLGGHESKQPK 265
           +  AKR +RAPRMRWTT+LHA FVHAV+ LGGHE   PK
Sbjct: 155 RFTAKRGVRAPRMRWTTTLHAHFVHAVQLLGGHERATPK 193

[Close]

BLAST of Carg24245 vs. TAIR10
Match: AT5G42630.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 59.7 bits (143), Expect = 3.4e-09
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 230 KRSMRAPRMRWTTSLHARFVHAVEHLGGHESKQPK 265
           KRS+RAPRMRWT++LHA FVHAV+ LGGHE   PK
Sbjct: 100 KRSIRAPRMRWTSTLHAHFVHAVQLLGGHERATPK 134

[Close]

BLAST of Carg24245 vs. TAIR10
Match: AT3G12730.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 47.4 bits (111), Expect = 1.7e-05
Identity = 20/29 (68.97%), Postives = 21/29 (72.41%), Query Frame = 0


Query: 236 PRMRWTTSLHARFVHAVEHLGGHESKQPK 265
           PR+RWTT LH RFV AV HLGG E   PK
Sbjct: 24  PRLRWTTELHERFVDAVTHLGGPEKATPK 52

[Close]

BLAST of Carg24245 vs. Swiss-Prot
Match: sp|Q93WJ9|KAN1_ARATH (Transcription repressor KAN1 OS=Arabidopsis thaliana OX=3702 GN=KAN1 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.4e-17
Identity = 120/276 (43.48%), Postives = 144/276 (52.17%), Query Frame = 0


Query: 1   MPLEGVFIEP----SSTPLPDLSLQISPPNVXXXXXXXXXXXXXXXXXXXXXXRTLSHGF 60
           M +EGVF+E     ++T LPDLSL IS P++         XXXXXXXXXXXXX       
Sbjct: 1   MSMEGVFLEKTKTNTTTTLPDLSLHISLPDI------HQYXXXXXXXXXXXXXXXXXXXX 60

Query: 61  AQTSFDL-LIQRNDPRAHTELSLGXXXXXXXXXXXGVPLNNPTPPPRLRGL-SMFDIS-- 120
              +F+L L   N P A                   +P       P + G+    D S  
Sbjct: 61  XXXNFELSLSHHNHPTAR-------IFHCPDRRTLNLPHQQHYNNPIINGVHQRVDESEI 120

Query: 121 SDGLQPIKGIPVYHNRPFSFLGVDQKDHYFHHQFPSSCFFPNYSNSN----GVVQMGYHH 180
           S+  +PI+GIPVYHNR F F           HQ  SS   P+    +     ++     +
Sbjct: 121 SNLHRPIRGIPVYHNRSFPF-----------HQQNSS--LPSLGGGDMDQISILNSSSGY 180

Query: 181 HRGIGGNNSSPRFNNGVVSIEAVXXXXXXXXXXXXXXXXXXXHVCSHGMMMRSRFLQKLP 240
           +       SSPR     V +   XXXXXXXXXXXXXXXXXXX       M+RSRFL K+P
Sbjct: 181 NNAYRSLQSSPRLKG--VPLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXMIRSRFLPKMP 240

Query: 241 AKRSMRAPRMRWTTSLHARFVHAVEHLGGHESKQPK 265
            KRSMRAPRMRWT+SLHARFVHAVE LGGHE   PK
Sbjct: 241 TKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPK 248

[Close]

BLAST of Carg24245 vs. Swiss-Prot
Match: sp|Q0J235|ROLL9_ORYSJ (Probable transcription factor RL9 OS=Oryza sativa subsp. japonica OX=39947 GN=RL9 PE=2 SV=2)

HSP 1 Score: 78.2 bits (191), Expect = 1.6e-13
Identity = 36/46 (78.26%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 219 MRSRFLQKLPAKRSMRAPRMRWTTSLHARFVHAVEHLGGHESKQPK 265
           + SRF+ KLPAKRSMRAPRMRWT++LHARFVHAVE LGGHE   PK
Sbjct: 308 LASRFMPKLPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPK 353

[Close]

BLAST of Carg24245 vs. Swiss-Prot
Match: sp|Q9C616|KAN2_ARATH (Probable transcription factor KAN2 OS=Arabidopsis thaliana OX=3702 GN=KAN2 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.2e-13
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 220 RSRFLQKLPAKRSMRAPRMRWTTSLHARFVHAVEHLGGHESKQPK 265
           R+RF+ + PAKRSMRAPRMRWTT+LHARFVHAVE LGGHE   PK
Sbjct: 198 RARFMPRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPK 242

[Close]

BLAST of Carg24245 vs. Swiss-Prot
Match: sp|Q941I2|KAN3_ARATH (Probable transcription factor KAN3 OS=Arabidopsis thaliana OX=3702 GN=KAN3 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.6e-08
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 226 KLPAKRSMRAPRMRWTTSLHARFVHAVEHLGGHESKQPK 265
           +  AKR +RAPRMRWTT+LHA FVHAV+ LGGHE   PK
Sbjct: 155 RFTAKRGVRAPRMRWTTTLHAHFVHAVQLLGGHERATPK 193

[Close]

BLAST of Carg24245 vs. Swiss-Prot
Match: sp|Q9FJV5|KAN4_ARATH (Probable transcription factor KAN4 OS=Arabidopsis thaliana OX=3702 GN=KAN4 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.1e-08
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 230 KRSMRAPRMRWTTSLHARFVHAVEHLGGHESKQPK 265
           KRS+RAPRMRWT++LHA FVHAV+ LGGHE   PK
Sbjct: 100 KRSIRAPRMRWTSTLHAHFVHAVQLLGGHERATPK 134

[Close]

BLAST of Carg24245 vs. TrEMBL
Match: tr|A0A0A0LBR3|A0A0A0LBR3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G194380 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 2.1e-58
Identity = 187/291 (64.26%), Postives = 196/291 (67.35%), Query Frame = 0


Query: 1   MPLEGVFIEPSSTPLPDLSLQISPPNVXXXXXXXXXXXXXXXXXXXXXXRTLSHGFAQTS 60
           MPLEG+FIEPSST LPDLSLQISPPNV    XXXXXXXXXXXXXXXXX RTLSHGF++TS
Sbjct: 1   MPLEGIFIEPSSTSLPDLSLQISPPNV----XXXXXXXXXXXXXXXXXIRTLSHGFSETS 60

Query: 61  FDLLIQR---------NDPRAHTELSLGXXXXXXXXXXXGVPLNNPTPPPRLRGLSMFDI 120
           FDLLIQR         ND R  TELSLG XXXXXXXXXX   L+ P   P LRGLSMFD+
Sbjct: 61  FDLLIQRNSQFQNNFSNDSRTQTELSLGTXXXXXXXXXXXXTLHPPPTLPHLRGLSMFDV 120

Query: 121 SSDGLQPIKGIPVYHNRPFSFLGVDQKDHYFHHQFPSSCFFPNYSN-------------- 180
           SSDGL+PIKGIPVYHNRPF FLGVDQKDH++ HQFPS+CFFPNYSN              
Sbjct: 121 SSDGLRPIKGIPVYHNRPFPFLGVDQKDHHYFHQFPSACFFPNYSNXXXXXXXXXXXXXX 180

Query: 181 ----SNGVVQMGYHHHRGIGGNNSSPRFNNGVVSIEAVXXXXXXXXXXXXXXXXXXXHVC 240
                                                 XXXXXXXXXXXXXXXXXXX   
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 SHGMMMRSRFLQKLPAKRSMRAPRMRWTTSLHARFVHAVEHLGGHESKQPK 265
                  SRFLQKLP KRSMRAPRMRWTTSLHARFVHAVEHLGGHE   PK
Sbjct: 241 XXXXXXXSRFLQKLPPKRSMRAPRMRWTTSLHARFVHAVEHLGGHERATPK 287

[Close]

BLAST of Carg24245 vs. TrEMBL
Match: tr|A0A2I4GT68|A0A2I4GT68_9ROSI (transcription repressor KAN1-like isoform X1 OS=Juglans regia OX=51240 GN=LOC109010652 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 2.5e-35
Identity = 125/299 (41.81%), Postives = 144/299 (48.16%), Query Frame = 0


Query: 1   MPLEGVFIEPSSTPLPDLSLQISPPNVXXXXXXXXXXXXXXXXXXXXXXRTLSHGFAQTS 60
           MPLEG+FIEPSSTPLPDLSL ISPPN                         LS   A  S
Sbjct: 3   MPLEGIFIEPSSTPLPDLSLHISPPN------SSSSSICTISNELDTRFDLLSQREAHNS 62

Query: 61  FDLLIQRNDPRAHTELSLGXXXXXXXXXXXGVPL---------NNPTPPPRLRGLSMFDI 120
              + +R + +AHTELSLG             P          +N        G+S+ D+
Sbjct: 63  NSNISERTESQAHTELSLGRNSRCGAEEAPHKPYQQQRHLLYQSNNHLNHINHGVSLLDV 122

Query: 121 SSDGLQPIKGIPVYHNRPFSFLGVDQKDHYFHHQFPSSCFFPNYS--------NSNGVVQ 180
           SSDGL PIKGIP+YH+R F FL +D        + P  CF+ N S        +S     
Sbjct: 123 SSDGLTPIKGIPIYHSRSFPFLPMDPT----RDKDPKMCFYQNPSYPSLSSSCSSLCTPS 182

Query: 181 MGYHHHRGIGG------------NNSSPRFNNGVV------SIEAVXXXXXXXXXXXXXX 240
           + +      GG            N SS  F  G        S +A       XXXXXXX 
Sbjct: 183 VSHSPSSYYGGGLDPMSILNSVPNASSAAFRLGATTRFNGFSADAFKSQQLHXXXXXXXQ 242

Query: 241 XXXXXHVCSHGMMMRSRFLQKLPAKRSMRAPRMRWTTSLHARFVHAVEHLGGHESKQPK 265
                   SHG MMRSRFL KLP KRSMRAPRMRWTT+LHARFVHAVE LGGHE   PK
Sbjct: 243 YGIGPSEASHG-MMRSRFLPKLPTKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPK 290

[Close]

BLAST of Carg24245 vs. TrEMBL
Match: tr|A0A2I4GT78|A0A2I4GT78_9ROSI (transcription repressor KAN1-like isoform X2 OS=Juglans regia OX=51240 GN=LOC109010652 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 2.5e-35
Identity = 125/299 (41.81%), Postives = 144/299 (48.16%), Query Frame = 0


Query: 1   MPLEGVFIEPSSTPLPDLSLQISPPNVXXXXXXXXXXXXXXXXXXXXXXRTLSHGFAQTS 60
           MPLEG+FIEPSSTPLPDLSL ISPPN                         LS   A  S
Sbjct: 3   MPLEGIFIEPSSTPLPDLSLHISPPN------SSSSSICTISNELDTRFDLLSQREAHNS 62

Query: 61  FDLLIQRNDPRAHTELSLGXXXXXXXXXXXGVPL---------NNPTPPPRLRGLSMFDI 120
              + +R + +AHTELSLG             P          +N        G+S+ D+
Sbjct: 63  NSNISERTESQAHTELSLGRNSRCGAEEAPHKPYQQQRHLLYQSNNHLNHINHGVSLLDV 122

Query: 121 SSDGLQPIKGIPVYHNRPFSFLGVDQKDHYFHHQFPSSCFFPNYS--------NSNGVVQ 180
           SSDGL PIKGIP+YH+R F FL +D        + P  CF+ N S        +S     
Sbjct: 123 SSDGLTPIKGIPIYHSRSFPFLPMDPT----RDKDPKMCFYQNPSYPSLSSSCSSLCTPS 182

Query: 181 MGYHHHRGIGG------------NNSSPRFNNGVV------SIEAVXXXXXXXXXXXXXX 240
           + +      GG            N SS  F  G        S +A       XXXXXXX 
Sbjct: 183 VSHSPSSYYGGGLDPMSILNSVPNASSAAFRLGATTRFNGFSADAFKSQQLHXXXXXXXQ 242

Query: 241 XXXXXHVCSHGMMMRSRFLQKLPAKRSMRAPRMRWTTSLHARFVHAVEHLGGHESKQPK 265
                   SHG MMRSRFL KLP KRSMRAPRMRWTT+LHARFVHAVE LGGHE   PK
Sbjct: 243 YGIGPSEASHG-MMRSRFLPKLPTKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPK 290

[Close]

BLAST of Carg24245 vs. TrEMBL
Match: tr|A0A2N9EQ88|A0A2N9EQ88_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4870 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.8e-34
Identity = 122/303 (40.26%), Postives = 142/303 (46.86%), Query Frame = 0


Query: 1   MPLEGVFIEPSSTPLPDLSLQISPPNVXXXXXXXXXXXXXXXXXXXXXXRTLSHGFAQTS 60
           MPL+G+FIEPSSTPLPDLSL ISPPN                        + S     TS
Sbjct: 3   MPLDGIFIEPSSTPLPDLSLHISPPNT-----------------------SASSSICNTS 62

Query: 61  FDLLIQRNDPRAHTELSLGXXXXXXXXXXXGVPLNNPTPPPRL----------------R 120
            +   +     AHTELSLG     XXXXXX                              
Sbjct: 63  -NSTTRTESQAAHTELSLGRNFTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNHINH 122

Query: 121 GLSMFDISSDGLQPIKGIPVYHNRPFSFLGVD---QKD-HYFHHQFPS-------SCFFP 180
           G+S  D+SSDGL+PIKGIPVY +R F FL ++   +KD     +Q PS       S   P
Sbjct: 123 GVSQLDVSSDGLRPIKGIPVYQHRSFPFLPMEHTREKDAKMCFYQMPSNNPSLSHSPSLP 182

Query: 181 NY------------SNSNGVVQMGYHHHRGIGGNNSSPRFNNGVVSIEAVXXXXXXXXXX 240
            Y            S  NG +   YHH  G     ++ RFN   +S +A           
Sbjct: 183 YYGGGGLDSMSILNSGPNGSLANAYHHRLG-----TTTRFNG--LSTDAFKSHQLHHLNH 242

Query: 241 XXXXXXXXXHVCSHGMMMRSRFLQKLPAKRSMRAPRMRWTTSLHARFVHAVEHLGGHESK 265
                       SHG MMRSRFL KLP KRSMRAPRMRWT++LHARFVHAVE LGGHE  
Sbjct: 243 HHNQYGVGTSEASHGTMMRSRFLPKLPTKRSMRAPRMRWTSTLHARFVHAVELLGGHERA 274

[Close]

BLAST of Carg24245 vs. TrEMBL
Match: tr|A0A1S3C3Y9|A0A1S3C3Y9_CUCME (transcription repressor KAN1-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103496208 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 5.3e-33
Identity = 84/167 (50.30%), Postives = 90/167 (53.89%), Query Frame = 0


Query: 108 MFDISSDGLQPIKGIPVYHNRPFSFLGVDQKDHYFHHQFPSSCFFPNYSNS--------- 167
           MFD+SSDGL+PIKGIPVYHNRPF FLGVDQKDH++ HQFPS+CFFPNYSN+         
Sbjct: 1   MFDVSSDGLRPIKGIPVYHNRPFPFLGVDQKDHHYFHQFPSACFFPNYSNTXXXXXXXXX 60

Query: 168 -NGVVQMGYHHHRGIGGNNSSPRFNNGVVSIEAVXXXXXXXXXXXXXXXXXXXHVCSHGM 227
                                 RFNNGV                                
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXARFNNGV-------------------------------- 120

Query: 228 MMRSRFLQKLPAKRSMRAPRMRWTTSLHARFVHAVEHLGGHESKQPK 265
                   KLP KRSMRAPRMRWTTSLHARFVHAVEHLGGHE   PK
Sbjct: 121 --------KLPPKRSMRAPRMRWTTSLHARFVHAVEHLGGHERATPK 127

The following BLAST results are available for this feature:

BLAST of Carg24245 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022934719.1	2.3e-112	96.21	transcription repressor KAN1-like isoform X2 [Cucurbita moschata]	[more]
XP_022934718.1	2.3e-112	96.21	transcription repressor KAN1-like isoform X1 [Cucurbita moschata]	[more]
XP_022934720.1	2.9e-99	82.95	transcription repressor KAN1-like isoform X3 [Cucurbita moschata]	[more]
XP_022983637.1	1.9e-98	84.09	transcription repressor KAN1-like isoform X2 [Cucurbita maxima]	[more]
XP_022983635.1	1.9e-98	84.09	transcription repressor KAN1-like isoform X1 [Cucurbita maxima] >XP_022983636.1 ...	[more]

BLAST of Carg24245 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G16560.1	8.0e-19	43.48	Homeodomain-like superfamily protein	[more]
AT1G32240.1	1.2e-14	77.78	Homeodomain-like superfamily protein	[more]
AT4G17695.1	8.9e-10	69.23	Homeodomain-like superfamily protein	[more]
AT5G42630.1	3.4e-09	74.29	Homeodomain-like superfamily protein	[more]
AT3G12730.1	1.7e-05	68.97	Homeodomain-like superfamily protein	[more]

BLAST of Carg24245 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q93WJ9\|KAN1_ARATH	1.4e-17	43.48	Transcription repressor KAN1 OS=Arabidopsis thaliana OX=3702 GN=KAN1 PE=1 SV=1	[more]
sp\|Q0J235\|ROLL9_ORYSJ	1.6e-13	78.26	Probable transcription factor RL9 OS=Oryza sativa subsp. japonica OX=39947 GN=RL...	[more]
sp\|Q9C616\|KAN2_ARATH	2.2e-13	77.78	Probable transcription factor KAN2 OS=Arabidopsis thaliana OX=3702 GN=KAN2 PE=2 ...	[more]
sp\|Q941I2\|KAN3_ARATH	1.6e-08	69.23	Probable transcription factor KAN3 OS=Arabidopsis thaliana OX=3702 GN=KAN3 PE=2 ...	[more]
sp\|Q9FJV5\|KAN4_ARATH	6.1e-08	74.29	Probable transcription factor KAN4 OS=Arabidopsis thaliana OX=3702 GN=KAN4 PE=1 ...	[more]

BLAST of Carg24245 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LBR3\|A0A0A0LBR3_CUCSA	2.1e-58	64.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G194380 PE=4 SV=1	[more]
tr\|A0A2I4GT68\|A0A2I4GT68_9ROSI	2.5e-35	41.81	transcription repressor KAN1-like isoform X1 OS=Juglans regia OX=51240 GN=LOC109...	[more]
tr\|A0A2I4GT78\|A0A2I4GT78_9ROSI	2.5e-35	41.81	transcription repressor KAN1-like isoform X2 OS=Juglans regia OX=51240 GN=LOC109...	[more]
tr\|A0A2N9EQ88\|A0A2N9EQ88_FAGSY	2.8e-34	40.26	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4870 PE=4 SV=1	[more]
tr\|A0A1S3C3Y9\|A0A1S3C3Y9_CUCME	5.3e-33	50.30	transcription repressor KAN1-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006447	Myb_dom_plants

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24245-RA	Carg24245-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 232..267 e-value: 8.9E-8 score: 34.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..102
None	No IPR available	PANTHER	PTHR31496:SF3	TRANSCRIPTION REPRESSOR KAN1	coord: 1..264
None	No IPR available	PANTHER	PTHR31496	FAMILY NOT NAMED	coord: 1..264
IPR006447	Myb domain, plants	TIGRFAM	TIGR01557	TIGR01557	coord: 236..265 e-value: 1.1E-7 score: 30.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24245	Csa3G194380	Cucumber (Chinese Long) v2	carcuB0196
Carg24245	MELO3C019573	Melon (DHL92) v3.5.1	carmeB0181
Carg24245	ClCG05G010540	Watermelon (Charleston Gray)	carwcgB0168
Carg24245	CSPI03G17880	Wild cucumber (PI 183967)	carcpiB0203
Carg24245	Cucsa.108670	Cucumber (Gy14) v1	carcgyB0216
Carg24245	CmaCh01G003330	Cucurbita maxima (Rimu)	carcmaB0241
Carg24245	CmaCh14G008750	Cucurbita maxima (Rimu)	carcmaB0240
Carg24245	CmoCh14G008930	Cucurbita moschata (Rifu)	carcmoB0248
Carg24245	Lsi05G002660	Bottle gourd (USVL1VR-Ls)	carlsiB158
Carg24245	Cp4.1LG03g05650	Cucurbita pepo (Zucchini)	carcpeB0257
Carg24245	Cp4.1LG02g16670	Cucurbita pepo (Zucchini)	carcpeB0256
Carg24245	CsGy3G017820	Cucumber (Gy14) v2	carcgybB0190
Carg24245	MELO3C019573.2	Melon (DHL92) v3.6.1	carmedB0185
Carg24245	CsaV3_3G017970	Cucumber (Chinese Long) v3	carcucB0203
Carg24245	Cla97C05G092910	Watermelon (97103) v2	carwmbB0181
Carg24245	Bhi01G001305	Wax gourd	carwgoB0227

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg24245	Carg07424	Silver-seed gourd	carcarB213

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24245	Cucurbita moschata (Rifu)	carcmoB0249
Carg24245	Watermelon (97103) v1	carwmB0166