Lsi05G002660 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi05G002660
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionTranscription factor, putative
Locationchr05 : 3370938 .. 3371780 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCTTAGAAGGTATCTTTATTGAACCTTCTTCAACCCCACTTCCTGATCTCTCTCTTCAAATCAGCCCTCCAAATGTTTCTTCTTCTTCCTCTTCTTCTTCTTCTTCTTCATATTCTTCAATTAGAACCCTCAGCCATGGATTTTCAGAAAGAAAATTTGATCTTTTGATTCAAAGAAACTCCCAATTCCAAAATAATATTTCAAATGACTCCCGAACTCAAATCGAGCTCTCTCTAGGAACCAACAACAACAATAACAACCACAACAATTCCTTCGCTGGAGCAACACTGCATCCACCGCCACCGCTCCCGCATCTCCGGGGGCTTTCGACGTTTGATGTATCATCGGACGGTTTACGACCGATCAAAGGGATTCCGGTGTATCACAACCGTCCATTTCCATTTTTGGGTGTGGATCAAAAAGATCACCATTATTTTCACCAATTTCCATCAGCTTGTTTCTTCCCAAATTACTTGAACACAAACACAAACGGCAGCGGCGGAGGAGGAGTCGTTGAAATGGGTTATCATCATCATCCAGGCGGCGGAGTTGGAGGAAATAATAATAATAATAATTGTTCAGCGAGGTTCAACAATGGGGTTGTTTCTGTTGAAGCAATTAAATGTTTGAATAATAATATTAATAGTAATAATAGTAATGCAGCTTCTTCTTCTTCTGATGTTTGTTCTCATGGGATGATGATGATGAGATCCAGATTTTTGCAGAAGCTTCCTGCAAAACGAAGCATGAGAGCTCCTAGAATGAGATGGACTACCTCCTTACATGCTCGTTTCGTTCATGCTGTCGAACATCTCGGCGGCCATGAAAGTAAACAATGA

mRNA sequence

ATGCCCTTAGAAGGTATCTTTATTGAACCTTCTTCAACCCCACTTCCTGATCTCTCTCTTCAAATCAGCCCTCCAAATGTTTCTTCTTCTTCCTCTTCTTCTTCTTCTTCTTCATATTCTTCAATTAGAACCCTCAGCCATGGATTTTCAGAAAGAAAATTTGATCTTTTGATTCAAAGAAACTCCCAATTCCAAAATAATATTTCAAATGACTCCCGAACTCAAATCGAGCTCTCTCTAGGAACCAACAACAACAATAACAACCACAACAATTCCTTCGCTGGAGCAACACTGCATCCACCGCCACCGCTCCCGCATCTCCGGGGGCTTTCGACGTTTGATGTATCATCGGACGGTTTACGACCGATCAAAGGGATTCCGGTGTATCACAACCGTCCATTTCCATTTTTGGGTGTGGATCAAAAAGATCACCATTATTTTCACCAATTTCCATCAGCTTGTTTCTTCCCAAATTACTTGAACACAAACACAAACGGCAGCGGCGGAGGAGGAGTCGTTGAAATGGGTTATCATCATCATCCAGGCGGCGGAGTTGGAGGAAATAATAATAATAATAATTGTTCAGCGAGGTTCAACAATGGGGTTGTTTCTGTTGAAGCAATTAAATGTTTGAATAATAATATTAATAGTAATAATAGTAATGCAGCTTCTTCTTCTTCTGATGTTTGTTCTCATGGGATGATGATGATGAGATCCAGATTTTTGCAGAAGCTTCCTGCAAAACGAAGCATGAGAGCTCCTAGAATGAGATGGACTACCTCCTTACATGCTCGTTTCGTTCATGCTGTCGAACATCTCGGCGGCCATGAAAGTAAACAATGA

Coding sequence (CDS)

ATGCCCTTAGAAGGTATCTTTATTGAACCTTCTTCAACCCCACTTCCTGATCTCTCTCTTCAAATCAGCCCTCCAAATGTTTCTTCTTCTTCCTCTTCTTCTTCTTCTTCTTCATATTCTTCAATTAGAACCCTCAGCCATGGATTTTCAGAAAGAAAATTTGATCTTTTGATTCAAAGAAACTCCCAATTCCAAAATAATATTTCAAATGACTCCCGAACTCAAATCGAGCTCTCTCTAGGAACCAACAACAACAATAACAACCACAACAATTCCTTCGCTGGAGCAACACTGCATCCACCGCCACCGCTCCCGCATCTCCGGGGGCTTTCGACGTTTGATGTATCATCGGACGGTTTACGACCGATCAAAGGGATTCCGGTGTATCACAACCGTCCATTTCCATTTTTGGGTGTGGATCAAAAAGATCACCATTATTTTCACCAATTTCCATCAGCTTGTTTCTTCCCAAATTACTTGAACACAAACACAAACGGCAGCGGCGGAGGAGGAGTCGTTGAAATGGGTTATCATCATCATCCAGGCGGCGGAGTTGGAGGAAATAATAATAATAATAATTGTTCAGCGAGGTTCAACAATGGGGTTGTTTCTGTTGAAGCAATTAAATGTTTGAATAATAATATTAATAGTAATAATAGTAATGCAGCTTCTTCTTCTTCTGATGTTTGTTCTCATGGGATGATGATGATGAGATCCAGATTTTTGCAGAAGCTTCCTGCAAAACGAAGCATGAGAGCTCCTAGAATGAGATGGACTACCTCCTTACATGCTCGTTTCGTTCATGCTGTCGAACATCTCGGCGGCCATGAAAGTAAACAATGA

Protein sequence

MPLEGIFIEPSSTPLPDLSLQISPPNVSSSSSSSSSSSYSSIRTLSHGFSERKFDLLIQRNSQFQNNISNDSRTQIELSLGTNNNNNNHNNSFAGATLHPPPPLPHLRGLSTFDVSSDGLRPIKGIPVYHNRPFPFLGVDQKDHHYFHQFPSACFFPNYLNTNTNGSGGGGVVEMGYHHHPGGGVGGNNNNNNCSARFNNGVVSVEAIKCLNNNINSNNSNAASSSSDVCSHGMMMMRSRFLQKLPAKRSMRAPRMRWTTSLHARFVHAVEHLGGHESKQ
BLAST of Lsi05G002660 vs. Swiss-Prot
Match: KAN1_ARATH (Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.0e-19
Identity = 103/306 (33.66%), Postives = 141/306 (46.08%), Query Frame = 1

Query: 1   MPLEGIFIEPS----STPLPDLSLQISPPNVSSSSSSSSSSSYSSIRTLSHGFSERKFDL 60
           M +EG+F+E +    +T LPDLSL IS P++     + SS   S                
Sbjct: 1   MSMEGVFLEKTKTNTTTTLPDLSLHISLPDIHQYHHNESSKESS---------------- 60

Query: 61  LIQRNSQFQNNISNDSRTQIELSLGTNNNNNNHNNSFAGATLHPPPP----LPHLRGLST 120
             +R+SQ +NN   +  +  ELSL       +H+N       H P      LPH +  + 
Sbjct: 61  --RRSSQLENN---NRSSNFELSL-------SHHNHPTARIFHCPDRRTLNLPHQQHYNN 120

Query: 121 FDVS-----------SDGLRPIKGIPVYHNRPFPFLGVDQKDHHYFHQFPSACFFPNYLN 180
             ++           S+  RPI+GIPVYHNR FPF           HQ           N
Sbjct: 121 PIINGVHQRVDESEISNLHRPIRGIPVYHNRSFPF-----------HQ----------QN 180

Query: 181 TNTNGSGGGGVVEMGYHHHPGGGVGGNNNNNNCSARFNNGVVSVEAIKCLN----NNINS 240
           ++    GGG + ++                 N S+ +NN   S+++   L     ++ + 
Sbjct: 181 SSLPSLGGGDMDQISIL--------------NSSSGYNNAYRSLQSSPRLKGVPLHHHHH 240

Query: 241 NNSNAASSSSDVCS------HGMMMMRSRFLQKLPAKRSMRAPRMRWTTSLHARFVHAVE 278
           +N      SSD  S      H   M+RSRFL K+P KRSMRAPRMRWT+SLHARFVHAVE
Sbjct: 241 HNQYGVVGSSDSSSPHHHNHHHHGMIRSRFLPKMPTKRSMRAPRMRWTSSLHARFVHAVE 243

BLAST of Lsi05G002660 vs. Swiss-Prot
Match: ROLL9_ORYSJ (Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 5.2e-12
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 1

Query: 237 MRSRFLQKLPAKRSMRAPRMRWTTSLHARFVHAVEHLGGHE 278
           + SRF+ KLPAKRSMRAPRMRWT++LHARFVHAVE LGGHE
Sbjct: 308 LASRFMPKLPAKRSMRAPRMRWTSTLHARFVHAVELLGGHE 348

BLAST of Lsi05G002660 vs. Swiss-Prot
Match: KAN2_ARATH (Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.3e-10
Identity = 87/277 (31.41%), Postives = 119/277 (42.96%), Query Frame = 1

Query: 16  PDLSLQISPPNVSSSSSSSSSSSYSSIRTLSHGFSERKFDLLIQRNSQFQNNISNDSRTQ 75
           PDLSLQISPPN      S  SS++   R+ +      + DL   R +        DSRT 
Sbjct: 8   PDLSLQISPPN------SKPSSTWQRRRSTTDQEDHEELDLGFWRRAL-------DSRTS 67

Query: 76  IELSLGTNNNNNNHNNSFAGATL------------HPPPPLPHLRGLSTFDVSSDGLRPI 135
              SL +N+ +   N+ F   +L            H P  LP+    +            
Sbjct: 68  ---SLVSNSTSKTINHPFQDLSLSNISHHQQQQQHHHPQLLPNCNSSNILT--------- 127

Query: 136 KGIPVYHNRPFPFLGVDQKDHHYFHQFPSACFFPNYLNTNTNGSGGGGVVEMGY-HHHPG 195
                     F F    Q+ H          F  + LNT+     G  +      HHHP 
Sbjct: 128 ---------SFQFPTQQQQQH-------LQGFLAHDLNTHLRPIRGIPLYHNPPPHHHP- 187

Query: 196 GGVGGNNNNNNCSARFNNGVV--SVEAIKCLNNNINSNNSNAASSSSDVCSHGMMMMRSR 255
                +     C     + ++  S  +   L  N NS N+++ S+ +    H   + R+R
Sbjct: 188 -----HRPPPPCFPFDPSSLIPSSSTSSPALTGNNNSFNTSSVSNPNYHNHHHQTLNRAR 237

Query: 256 FLQKLPAKRSMRAPRMRWTTSLHARFVHAVEHLGGHE 278
           F+ + PAKRSMRAPRMRWTT+LHARFVHAVE LGGHE
Sbjct: 248 FMPRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHE 237

BLAST of Lsi05G002660 vs. Swiss-Prot
Match: KAN4_ARATH (Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.5e-06
Identity = 24/30 (80.00%), Postives = 28/30 (93.33%), Query Frame = 1

Query: 248 KRSMRAPRMRWTTSLHARFVHAVEHLGGHE 278
           KRS+RAPRMRWT++LHA FVHAV+ LGGHE
Sbjct: 100 KRSIRAPRMRWTSTLHAHFVHAVQLLGGHE 129

BLAST of Lsi05G002660 vs. Swiss-Prot
Match: KAN3_ARATH (Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.3e-06
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 1

Query: 213 NNINSNNSNAASSSSDVCSHGMMMMRSRFLQKLP----AKRSMRAPRMRWTTSLHARFVH 272
           + +N  +++    ++  CS  +     R  Q  P    AKR +RAPRMRWTT+LHA FVH
Sbjct: 120 SEVNGQHASRRLITNPNCSFNLHNRHRRQAQPQPPRFTAKRGVRAPRMRWTTTLHAHFVH 179

Query: 273 AVEHLGGHE 278
           AV+ LGGHE
Sbjct: 180 AVQLLGGHE 188

BLAST of Lsi05G002660 vs. TrEMBL
Match: A0A0A0LBR3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G194380 PE=4 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 1.0e-123
Identity = 250/287 (87.11%), Postives = 255/287 (88.85%), Query Frame = 1

Query: 1   MPLEGIFIEPSSTPLPDLSLQISPPNVSSSSSSSSSSS---YSSIRTLSHGFSERKFDLL 60
           MPLEGIFIEPSST LPDLSLQISPPNVSSSSSSSSSSS   YSSIRTLSHGFSE  FDLL
Sbjct: 1   MPLEGIFIEPSSTSLPDLSLQISPPNVSSSSSSSSSSSSSSYSSIRTLSHGFSETSFDLL 60

Query: 61  IQRNSQFQNNISNDSRTQIELSLGTNNNNNNHNNSFAGATLHPPPPLPHLRGLSTFDVSS 120
           IQRNSQFQNN SNDSRTQ ELSLGTNNNNNN  + F GATLHPPP LPHLRGLS FDVSS
Sbjct: 61  IQRNSQFQNNFSNDSRTQTELSLGTNNNNNN--SLFGGATLHPPPTLPHLRGLSMFDVSS 120

Query: 121 DGLRPIKGIPVYHNRPFPFLGVDQKDHHYFHQFPSACFFPNYLNTNTNGSGGGGVVEMGY 180
           DGLRPIKGIPVYHNRPFPFLGVDQKDHHYFHQFPSACFFPNY NTN N +GGGGV +MGY
Sbjct: 121 DGLRPIKGIPVYHNRPFPFLGVDQKDHHYFHQFPSACFFPNYSNTNGN-NGGGGVNQMGY 180

Query: 181 HHHPGGGVGGNNNNNNCSARFNNGVVSVEAI-KCLNNNINSNNSNAAS-----SSSDVCS 240
           HH  GGGVGGNNNN  CSARFNNGVV VEAI KCLNNN NSN++NAAS     SSSDVCS
Sbjct: 181 HHRGGGGVGGNNNN--CSARFNNGVVCVEAINKCLNNNSNSNSNNAASCCCSSSSSDVCS 240

Query: 241 -HGMMMMRSRFLQKLPAKRSMRAPRMRWTTSLHARFVHAVEHLGGHE 278
            HGMMMMRSRFLQKLP KRSMRAPRMRWTTSLHARFVHAVEHLGGHE
Sbjct: 241 SHGMMMMRSRFLQKLPPKRSMRAPRMRWTTSLHARFVHAVEHLGGHE 282

BLAST of Lsi05G002660 vs. TrEMBL
Match: A0A067KLA9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10525 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.5e-31
Identity = 124/307 (40.39%), Postives = 167/307 (54.40%), Query Frame = 1

Query: 1   MPLEGIFIEPSSTPLPDLSLQISPPNVSSSSSSSSSSSYSSIRTLSHGFSERKFDLLIQR 60
           MPLEG+FIEPS+ P+PDLSL ISPPN+S SS S++  +  +    S  F   K +     
Sbjct: 1   MPLEGVFIEPSTNPVPDLSLHISPPNISPSSLSNTIINNKTGADTSFNFLVSKSNNTSTV 60

Query: 61  NSQFQNNISNDSRTQIELSLGTNNNNNNHNNS-------------FAGATLHPPPPLPHL 120
            +  +N+ S DS+   ELSL   +N+ +   S              +  T      L HL
Sbjct: 61  ITSMRNSTS-DSQAYTELSLAHPSNSRSDQESPHIPYHYQQNSLNTSTCTTATTSHLSHL 120

Query: 121 R-GLSTFDVSSDGLRPIKGIPVYHNRPFPFLGVDQKDHHYFHQFPSACFFPNYLNTNTNG 180
             G+S  DVS DGLRPIKGIPVYHNR FPFL  +Q   +   + P  CF+P     +++ 
Sbjct: 121 NHGVSRLDVS-DGLRPIKGIPVYHNRSFPFLPSEQSRDN---KDPKMCFYPMLSYPSSSS 180

Query: 181 S------GGGGVVEMGY---------HHHPGGGVGGNNNNN-NCSARFNNGVVSVEAIKC 240
           S      GGG  ++  Y         HHH    +   + N    + RF+   +S++A K 
Sbjct: 181 SSVPYYIGGGASLDPMYSSTANHHHHHHHQQQSLPAYSTNRLTPTTRFSG--LSIDAFKS 240

Query: 241 LNNNINSNNSNAASSSSDVCSHGMMMMRSRFLQKLPAKRSMRAPRMRWTTSLHARFVHAV 278
            ++ ++ +     S  +   SHG++  RSRFL KLP KRSMRAPRMRWTT+LH RFVHAV
Sbjct: 241 -HHQLHHHQYGVGSGEA---SHGLI--RSRFLPKLPTKRSMRAPRMRWTTTLHNRFVHAV 294

BLAST of Lsi05G002660 vs. TrEMBL
Match: A0A0B2QWZ3_GLYSO (Transcription repressor KAN1 OS=Glycine soja GN=glysoja_034815 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 5.5e-29
Identity = 130/342 (38.01%), Postives = 175/342 (51.17%), Query Frame = 1

Query: 1   MPLEGIFIEPSSTPLPDLSLQISPPNVSSSSSSSSSSSYSSIRTLSHGF----------- 60
           MPLEGIFIEP+ST +PDLSL ISPP+ SSSSS   S++ ++  T   G            
Sbjct: 1   MPLEGIFIEPTSTSIPDLSLHISPPSTSSSSSLICSNNNNNNNTSGGGGGINYEAHNSRS 60

Query: 61  ----SERKFDLLIQRNSQF----------------QNNISNDS--RTQIELSLGTNNNNN 120
               S+   +L + RN                    NNI+N+   +TQ       + +++
Sbjct: 61  TNFPSQAHTELSLGRNFSVGGGGRGGGALEEPPPHNNNINNNPYYQTQKAHLQHLHQHHS 120

Query: 121 NHNNSFAGATLHPPPPLPHLR-GLSTFDVSSDGLRPIKGIPVYHNRPFPFLGVDQ----K 180
           N + +    T      + H+  G+S  DVSS+G+RPIKGIPVYHNR FPFL ++     K
Sbjct: 121 NASRATTSTTTSSSNHMSHINYGVSLLDVSSEGMRPIKGIPVYHNRSFPFLPLEHSRSDK 180

Query: 181 DHH----YFHQFP------SAC--FFPNYLNTN-------TNGSGGGGVVEMGYHHHPGG 240
           DHH     +H  P      S+C    P+  +++          +  GG+  M Y    GG
Sbjct: 181 DHHAKMCLYHHMPTYPSLSSSCSPLCPSSSSSSPAAPYFVATAATAGGLDPMSYLSCSGG 240

Query: 241 GVGGNNNNNNCSARFNNGVVSVEAIKCLNNNINSNNSNAASSSSDVC-----SH---GMM 278
                      + RFN    S EA K  +   + ++S+++SSS         SH      
Sbjct: 241 TTNPAAYRAATATRFNG--FSGEAFKSHHPLHHHHHSSSSSSSPQYGVGPGPSHLEVSSG 300

BLAST of Lsi05G002660 vs. TrEMBL
Match: K7LRG8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G213700 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 9.5e-29
Identity = 129/342 (37.72%), Postives = 176/342 (51.46%), Query Frame = 1

Query: 1   MPLEGIFIEPSSTPLPDLSLQISPPNVSSSSSSSSSSSYSSIRTLSHGF----------- 60
           MPLEGIFIEP+ST +PDLSL ISPP+ SS SS   S++ ++  T   G            
Sbjct: 1   MPLEGIFIEPTSTSIPDLSLHISPPSTSSFSSLICSNNNNNNNTSGGGGGINYEAHNSRS 60

Query: 61  ----SERKFDLLIQRNSQF----------------QNNISNDS--RTQIELSLGTNNNNN 120
               S+   +L + RN                    NNI+N+   +TQ       + +++
Sbjct: 61  TNFPSQAHTELSLGRNFSVGGGGRGGGALEEPPPHNNNINNNPYYQTQKAHLQHLHQHHS 120

Query: 121 NHNNSFAGATLHPPPPLPHLR-GLSTFDVSSDGLRPIKGIPVYHNRPFPFLGVDQ----K 180
           N + +    T      + H+  G+S  DVSS+G+RPIKGIPVYHNR FPFL ++     K
Sbjct: 121 NASRATTSTTTSSSNHMSHINYGVSLLDVSSEGMRPIKGIPVYHNRSFPFLPLEHSRSDK 180

Query: 181 DHH----YFHQFP------SAC--FFPNYLNTN-------TNGSGGGGVVEMGYHHHPGG 240
           DHH     +H  P      S+C    P+  +++          +  GG+  M Y    GG
Sbjct: 181 DHHAKMCLYHHMPTYPSLSSSCSPLCPSSSSSSPAAPYFVATAATAGGLDPMSYLSCSGG 240

Query: 241 GVGGNNNNNNCSARFNNGVVSVEAIKCLNNNINSNNSNAASSSSDVC-----SHGMM--- 278
                 +    + RFN    S EA K  +   + ++S+++SSS         SH  +   
Sbjct: 241 TTNPAAHRAATATRFNG--FSGEAFKSHHPLHHHHHSSSSSSSPQYGVGPGPSHHEVSSG 300

BLAST of Lsi05G002660 vs. TrEMBL
Match: K7LRG7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G213700 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 9.5e-29
Identity = 129/342 (37.72%), Postives = 176/342 (51.46%), Query Frame = 1

Query: 1   MPLEGIFIEPSSTPLPDLSLQISPPNVSSSSSSSSSSSYSSIRTLSHGF----------- 60
           MPLEGIFIEP+ST +PDLSL ISPP+ SS SS   S++ ++  T   G            
Sbjct: 1   MPLEGIFIEPTSTSIPDLSLHISPPSTSSFSSLICSNNNNNNNTSGGGGGINYEAHNSRS 60

Query: 61  ----SERKFDLLIQRNSQF----------------QNNISNDS--RTQIELSLGTNNNNN 120
               S+   +L + RN                    NNI+N+   +TQ       + +++
Sbjct: 61  TNFPSQAHTELSLGRNFSVGGGGRGGGALEEPPPHNNNINNNPYYQTQKAHLQHLHQHHS 120

Query: 121 NHNNSFAGATLHPPPPLPHLR-GLSTFDVSSDGLRPIKGIPVYHNRPFPFLGVDQ----K 180
           N + +    T      + H+  G+S  DVSS+G+RPIKGIPVYHNR FPFL ++     K
Sbjct: 121 NASRATTSTTTSSSNHMSHINYGVSLLDVSSEGMRPIKGIPVYHNRSFPFLPLEHSRSDK 180

Query: 181 DHH----YFHQFP------SAC--FFPNYLNTN-------TNGSGGGGVVEMGYHHHPGG 240
           DHH     +H  P      S+C    P+  +++          +  GG+  M Y    GG
Sbjct: 181 DHHAKMCLYHHMPTYPSLSSSCSPLCPSSSSSSPAAPYFVATAATAGGLDPMSYLSCSGG 240

Query: 241 GVGGNNNNNNCSARFNNGVVSVEAIKCLNNNINSNNSNAASSSSDVC-----SHGMM--- 278
                 +    + RFN    S EA K  +   + ++S+++SSS         SH  +   
Sbjct: 241 TTNPAAHRAATATRFNG--FSGEAFKSHHPLHHHHHSSSSSSSPQYGVGPGPSHHEVSSG 300

BLAST of Lsi05G002660 vs. TAIR10
Match: AT5G16560.1 (AT5G16560.1 Homeodomain-like superfamily protein)

HSP 1 Score: 97.8 bits (242), Expect = 1.1e-20
Identity = 103/306 (33.66%), Postives = 141/306 (46.08%), Query Frame = 1

Query: 1   MPLEGIFIEPS----STPLPDLSLQISPPNVSSSSSSSSSSSYSSIRTLSHGFSERKFDL 60
           M +EG+F+E +    +T LPDLSL IS P++     + SS   S                
Sbjct: 1   MSMEGVFLEKTKTNTTTTLPDLSLHISLPDIHQYHHNESSKESS---------------- 60

Query: 61  LIQRNSQFQNNISNDSRTQIELSLGTNNNNNNHNNSFAGATLHPPPP----LPHLRGLST 120
             +R+SQ +NN   +  +  ELSL       +H+N       H P      LPH +  + 
Sbjct: 61  --RRSSQLENN---NRSSNFELSL-------SHHNHPTARIFHCPDRRTLNLPHQQHYNN 120

Query: 121 FDVS-----------SDGLRPIKGIPVYHNRPFPFLGVDQKDHHYFHQFPSACFFPNYLN 180
             ++           S+  RPI+GIPVYHNR FPF           HQ           N
Sbjct: 121 PIINGVHQRVDESEISNLHRPIRGIPVYHNRSFPF-----------HQ----------QN 180

Query: 181 TNTNGSGGGGVVEMGYHHHPGGGVGGNNNNNNCSARFNNGVVSVEAIKCLN----NNINS 240
           ++    GGG + ++                 N S+ +NN   S+++   L     ++ + 
Sbjct: 181 SSLPSLGGGDMDQISIL--------------NSSSGYNNAYRSLQSSPRLKGVPLHHHHH 240

Query: 241 NNSNAASSSSDVCS------HGMMMMRSRFLQKLPAKRSMRAPRMRWTTSLHARFVHAVE 278
           +N      SSD  S      H   M+RSRFL K+P KRSMRAPRMRWT+SLHARFVHAVE
Sbjct: 241 HNQYGVVGSSDSSSPHHHNHHHHGMIRSRFLPKMPTKRSMRAPRMRWTSSLHARFVHAVE 243

BLAST of Lsi05G002660 vs. TAIR10
Match: AT1G32240.1 (AT1G32240.1 Homeodomain-like superfamily protein)

HSP 1 Score: 66.2 bits (160), Expect = 3.6e-11
Identity = 87/277 (31.41%), Postives = 119/277 (42.96%), Query Frame = 1

Query: 16  PDLSLQISPPNVSSSSSSSSSSSYSSIRTLSHGFSERKFDLLIQRNSQFQNNISNDSRTQ 75
           PDLSLQISPPN      S  SS++   R+ +      + DL   R +        DSRT 
Sbjct: 8   PDLSLQISPPN------SKPSSTWQRRRSTTDQEDHEELDLGFWRRAL-------DSRTS 67

Query: 76  IELSLGTNNNNNNHNNSFAGATL------------HPPPPLPHLRGLSTFDVSSDGLRPI 135
              SL +N+ +   N+ F   +L            H P  LP+    +            
Sbjct: 68  ---SLVSNSTSKTINHPFQDLSLSNISHHQQQQQHHHPQLLPNCNSSNILT--------- 127

Query: 136 KGIPVYHNRPFPFLGVDQKDHHYFHQFPSACFFPNYLNTNTNGSGGGGVVEMGY-HHHPG 195
                     F F    Q+ H          F  + LNT+     G  +      HHHP 
Sbjct: 128 ---------SFQFPTQQQQQH-------LQGFLAHDLNTHLRPIRGIPLYHNPPPHHHP- 187

Query: 196 GGVGGNNNNNNCSARFNNGVV--SVEAIKCLNNNINSNNSNAASSSSDVCSHGMMMMRSR 255
                +     C     + ++  S  +   L  N NS N+++ S+ +    H   + R+R
Sbjct: 188 -----HRPPPPCFPFDPSSLIPSSSTSSPALTGNNNSFNTSSVSNPNYHNHHHQTLNRAR 237

Query: 256 FLQKLPAKRSMRAPRMRWTTSLHARFVHAVEHLGGHE 278
           F+ + PAKRSMRAPRMRWTT+LHARFVHAVE LGGHE
Sbjct: 248 FMPRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHE 237

BLAST of Lsi05G002660 vs. TAIR10
Match: AT5G42630.1 (AT5G42630.1 Homeodomain-like superfamily protein)

HSP 1 Score: 55.1 bits (131), Expect = 8.2e-08
Identity = 24/30 (80.00%), Postives = 28/30 (93.33%), Query Frame = 1

Query: 248 KRSMRAPRMRWTTSLHARFVHAVEHLGGHE 278
           KRS+RAPRMRWT++LHA FVHAV+ LGGHE
Sbjct: 100 KRSIRAPRMRWTSTLHAHFVHAVQLLGGHE 129

BLAST of Lsi05G002660 vs. TAIR10
Match: AT4G17695.1 (AT4G17695.1 Homeodomain-like superfamily protein)

HSP 1 Score: 53.9 bits (128), Expect = 1.8e-07
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 1

Query: 213 NNINSNNSNAASSSSDVCSHGMMMMRSRFLQKLP----AKRSMRAPRMRWTTSLHARFVH 272
           + +N  +++    ++  CS  +     R  Q  P    AKR +RAPRMRWTT+LHA FVH
Sbjct: 120 SEVNGQHASRRLITNPNCSFNLHNRHRRQAQPQPPRFTAKRGVRAPRMRWTTTLHAHFVH 179

Query: 273 AVEHLGGHE 278
           AV+ LGGHE
Sbjct: 180 AVQLLGGHE 188

BLAST of Lsi05G002660 vs. NCBI nr
Match: gi|449445939|ref|XP_004140729.1| (PREDICTED: transcription repressor KAN1-like isoform X1 [Cucumis sativus])

HSP 1 Score: 451.1 bits (1159), Expect = 1.5e-123
Identity = 250/287 (87.11%), Postives = 255/287 (88.85%), Query Frame = 1

Query: 1   MPLEGIFIEPSSTPLPDLSLQISPPNVSSSSSSSSSSS---YSSIRTLSHGFSERKFDLL 60
           MPLEGIFIEPSST LPDLSLQISPPNVSSSSSSSSSSS   YSSIRTLSHGFSE  FDLL
Sbjct: 1   MPLEGIFIEPSSTSLPDLSLQISPPNVSSSSSSSSSSSSSSYSSIRTLSHGFSETSFDLL 60

Query: 61  IQRNSQFQNNISNDSRTQIELSLGTNNNNNNHNNSFAGATLHPPPPLPHLRGLSTFDVSS 120
           IQRNSQFQNN SNDSRTQ ELSLGTNNNNNN  + F GATLHPPP LPHLRGLS FDVSS
Sbjct: 61  IQRNSQFQNNFSNDSRTQTELSLGTNNNNNN--SLFGGATLHPPPTLPHLRGLSMFDVSS 120

Query: 121 DGLRPIKGIPVYHNRPFPFLGVDQKDHHYFHQFPSACFFPNYLNTNTNGSGGGGVVEMGY 180
           DGLRPIKGIPVYHNRPFPFLGVDQKDHHYFHQFPSACFFPNY NTN N +GGGGV +MGY
Sbjct: 121 DGLRPIKGIPVYHNRPFPFLGVDQKDHHYFHQFPSACFFPNYSNTNGN-NGGGGVNQMGY 180

Query: 181 HHHPGGGVGGNNNNNNCSARFNNGVVSVEAI-KCLNNNINSNNSNAAS-----SSSDVCS 240
           HH  GGGVGGNNNN  CSARFNNGVV VEAI KCLNNN NSN++NAAS     SSSDVCS
Sbjct: 181 HHRGGGGVGGNNNN--CSARFNNGVVCVEAINKCLNNNSNSNSNNAASCCCSSSSSDVCS 240

Query: 241 -HGMMMMRSRFLQKLPAKRSMRAPRMRWTTSLHARFVHAVEHLGGHE 278
            HGMMMMRSRFLQKLP KRSMRAPRMRWTTSLHARFVHAVEHLGGHE
Sbjct: 241 SHGMMMMRSRFLQKLPPKRSMRAPRMRWTTSLHARFVHAVEHLGGHE 282

BLAST of Lsi05G002660 vs. NCBI nr
Match: gi|778679931|ref|XP_011651216.1| (PREDICTED: transcription repressor KAN1-like isoform X2 [Cucumis sativus])

HSP 1 Score: 451.1 bits (1159), Expect = 1.5e-123
Identity = 250/287 (87.11%), Postives = 255/287 (88.85%), Query Frame = 1

Query: 1   MPLEGIFIEPSSTPLPDLSLQISPPNVSSSSSSSSSSS---YSSIRTLSHGFSERKFDLL 60
           MPLEGIFIEPSST LPDLSLQISPPNVSSSSSSSSSSS   YSSIRTLSHGFSE  FDLL
Sbjct: 1   MPLEGIFIEPSSTSLPDLSLQISPPNVSSSSSSSSSSSSSSYSSIRTLSHGFSETSFDLL 60

Query: 61  IQRNSQFQNNISNDSRTQIELSLGTNNNNNNHNNSFAGATLHPPPPLPHLRGLSTFDVSS 120
           IQRNSQFQNN SNDSRTQ ELSLGTNNNNNN  + F GATLHPPP LPHLRGLS FDVSS
Sbjct: 61  IQRNSQFQNNFSNDSRTQTELSLGTNNNNNN--SLFGGATLHPPPTLPHLRGLSMFDVSS 120

Query: 121 DGLRPIKGIPVYHNRPFPFLGVDQKDHHYFHQFPSACFFPNYLNTNTNGSGGGGVVEMGY 180
           DGLRPIKGIPVYHNRPFPFLGVDQKDHHYFHQFPSACFFPNY NTN N +GGGGV +MGY
Sbjct: 121 DGLRPIKGIPVYHNRPFPFLGVDQKDHHYFHQFPSACFFPNYSNTNGN-NGGGGVNQMGY 180

Query: 181 HHHPGGGVGGNNNNNNCSARFNNGVVSVEAI-KCLNNNINSNNSNAAS-----SSSDVCS 240
           HH  GGGVGGNNNN  CSARFNNGVV VEAI KCLNNN NSN++NAAS     SSSDVCS
Sbjct: 181 HHRGGGGVGGNNNN--CSARFNNGVVCVEAINKCLNNNSNSNSNNAASCCCSSSSSDVCS 240

Query: 241 -HGMMMMRSRFLQKLPAKRSMRAPRMRWTTSLHARFVHAVEHLGGHE 278
            HGMMMMRSRFLQKLP KRSMRAPRMRWTTSLHARFVHAVEHLGGHE
Sbjct: 241 SHGMMMMRSRFLQKLPPKRSMRAPRMRWTTSLHARFVHAVEHLGGHE 282

BLAST of Lsi05G002660 vs. NCBI nr
Match: gi|778679933|ref|XP_011651217.1| (PREDICTED: transcription repressor KAN1-like isoform X3 [Cucumis sativus])

HSP 1 Score: 357.8 bits (917), Expect = 1.7e-95
Identity = 204/280 (72.86%), Postives = 210/280 (75.00%), Query Frame = 1

Query: 1   MPLEGIFIEPSSTPLPDLSLQISPPNVSSSSSSSSSSS---YSSIRTLSHGFSERKFDLL 60
           MPLEGIFIEPSST LPDLSLQISPPNVSSSSSSSSSSS   YSSIRTLSHGFSE  FDLL
Sbjct: 1   MPLEGIFIEPSSTSLPDLSLQISPPNVSSSSSSSSSSSSSSYSSIRTLSHGFSETSFDLL 60

Query: 61  IQRNSQFQNNISNDSRTQIELSLGTNNNNNNHNNSFAGATLHPPPPLPHLRGLSTFDVSS 120
           IQRNSQFQNN SNDSRTQ ELSLGTNNNNNN  + F GATLHPPP LPHLRGLS FDVSS
Sbjct: 61  IQRNSQFQNNFSNDSRTQTELSLGTNNNNNN--SLFGGATLHPPPTLPHLRGLSMFDVSS 120

Query: 121 DGLRPIKGIPVYHNRPFPFLGVDQKDHHYFHQFPSACFFPNYLNTNTNGSGGGGVVEMGY 180
           DGLRPIKGIPVYHNRPFPFLGVDQKDHHYFHQFPSACFFPNY NTN N +GGGGV +MGY
Sbjct: 121 DGLRPIKGIPVYHNRPFPFLGVDQKDHHYFHQFPSACFFPNYSNTNGN-NGGGGVNQMGY 180

Query: 181 HHHPGGGVGGNNNNNNCSARFNNGVVSVEAIKCLNNNINSNNSNAASSSSDVCSHGMMMM 240
           HH  GGGVGG                        NNN ++  +N                
Sbjct: 181 HHRGGGGVGG-----------------------NNNNCSARFNNGV-------------- 234

Query: 241 RSRFLQKLPAKRSMRAPRMRWTTSLHARFVHAVEHLGGHE 278
                 KLP KRSMRAPRMRWTTSLHARFVHAVEHLGGHE
Sbjct: 241 ------KLPPKRSMRAPRMRWTTSLHARFVHAVEHLGGHE 234

BLAST of Lsi05G002660 vs. NCBI nr
Match: gi|778679936|ref|XP_011651218.1| (PREDICTED: transcription repressor KAN1-like isoform X4 [Cucumis sativus])

HSP 1 Score: 355.5 bits (911), Expect = 8.3e-95
Identity = 203/280 (72.50%), Postives = 210/280 (75.00%), Query Frame = 1

Query: 1   MPLEGIFIEPSSTPLPDLSLQISPPNVSSSSSSSSSSS---YSSIRTLSHGFSERKFDLL 60
           MPLEGIFIEPSST LPDLSLQISPPNVSSSSSSSSSSS   YSSIRTLSHGFSE  FDLL
Sbjct: 1   MPLEGIFIEPSSTSLPDLSLQISPPNVSSSSSSSSSSSSSSYSSIRTLSHGFSETSFDLL 60

Query: 61  IQRNSQFQNNISNDSRTQIELSLGTNNNNNNHNNSFAGATLHPPPPLPHLRGLSTFDVSS 120
           IQRNSQFQNN SNDSRTQ ELSLGTNNNNNN  + F GATLHPPP LPHLRGLS FDVSS
Sbjct: 61  IQRNSQFQNNFSNDSRTQTELSLGTNNNNNN--SLFGGATLHPPPTLPHLRGLSMFDVSS 120

Query: 121 DGLRPIKGIPVYHNRPFPFLGVDQKDHHYFHQFPSACFFPNYLNTNTNGSGGGGVVEMGY 180
           DGLRPIKGIPVYHNRPFPFLGVDQKDHHYFHQFPSACFFPNY NTN N +GGGGV +MGY
Sbjct: 121 DGLRPIKGIPVYHNRPFPFLGVDQKDHHYFHQFPSACFFPNYSNTNGN-NGGGGVNQMGY 180

Query: 181 HHHPGGGVGGNNNNNNCSARFNNGVVSVEAIKCLNNNINSNNSNAASSSSDVCSHGMMMM 240
           HH  GGGVG                             N+NN +A  ++           
Sbjct: 181 HHRGGGGVG----------------------------GNNNNCSARFNNG---------- 233

Query: 241 RSRFLQKLPAKRSMRAPRMRWTTSLHARFVHAVEHLGGHE 278
                 KLP KRSMRAPRMRWTTSLHARFVHAVEHLGGHE
Sbjct: 241 ------KLPPKRSMRAPRMRWTTSLHARFVHAVEHLGGHE 233

BLAST of Lsi05G002660 vs. NCBI nr
Match: gi|659112399|ref|XP_008456200.1| (PREDICTED: transcription repressor KAN1-like isoform X2 [Cucumis melo])

HSP 1 Score: 280.0 bits (715), Expect = 4.5e-72
Identity = 150/173 (86.71%), Postives = 153/173 (88.44%), Query Frame = 1

Query: 113 FDVSSDGLRPIKGIPVYHNRPFPFLGVDQKDHHYFHQFPSACFFPNYLNTNTNGSGGGGV 172
           FDVSSDGLRPIKGIPVYHNRPFPFLGVDQKDHHYFHQFPSACFFPNY NTN N SGGGGV
Sbjct: 2   FDVSSDGLRPIKGIPVYHNRPFPFLGVDQKDHHYFHQFPSACFFPNYSNTNGN-SGGGGV 61

Query: 173 VEMGYHHHPGGGVGGNNNNNNCSARFNNGVVSVEAI-KCLNN--NINSNNSNAA----SS 232
            +MGY+H  GGGVGG  NNNNCSARFNNGVV  EAI KCLNN  N NSNN+NAA    SS
Sbjct: 62  AQMGYYHRGGGGVGG--NNNNCSARFNNGVVCAEAINKCLNNNSNSNSNNNNAASCCCSS 121

Query: 233 SSDVC-SHGMMMMRSRFLQKLPAKRSMRAPRMRWTTSLHARFVHAVEHLGGHE 278
           SSDVC SHGMMMMRSRFLQKLP KRSMRAPRMRWTTSLHARFVHAVEHLGGHE
Sbjct: 122 SSDVCSSHGMMMMRSRFLQKLPPKRSMRAPRMRWTTSLHARFVHAVEHLGGHE 171

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAN1_ARATH2.0e-1933.66Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1[more]
ROLL9_ORYSJ5.2e-1282.93Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV... [more]
KAN2_ARATH6.3e-1031.41Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1[more]
KAN4_ARATH1.5e-0680.00Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1[more]
KAN3_ARATH3.3e-0644.93Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LBR3_CUCSA1.0e-12387.11Uncharacterized protein OS=Cucumis sativus GN=Csa_3G194380 PE=4 SV=1[more]
A0A067KLA9_JATCU3.5e-3140.39Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10525 PE=4 SV=1[more]
A0A0B2QWZ3_GLYSO5.5e-2938.01Transcription repressor KAN1 OS=Glycine soja GN=glysoja_034815 PE=4 SV=1[more]
K7LRG8_SOYBN9.5e-2937.72Uncharacterized protein OS=Glycine max GN=GLYMA_11G213700 PE=4 SV=1[more]
K7LRG7_SOYBN9.5e-2937.72Uncharacterized protein OS=Glycine max GN=GLYMA_11G213700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G16560.11.1e-2033.66 Homeodomain-like superfamily protein[more]
AT1G32240.13.6e-1131.41 Homeodomain-like superfamily protein[more]
AT5G42630.18.2e-0880.00 Homeodomain-like superfamily protein[more]
AT4G17695.11.8e-0744.93 Homeodomain-like superfamily protein[more]
Match NameE-valueIdentityDescription
gi|449445939|ref|XP_004140729.1|1.5e-12387.11PREDICTED: transcription repressor KAN1-like isoform X1 [Cucumis sativus][more]
gi|778679931|ref|XP_011651216.1|1.5e-12387.11PREDICTED: transcription repressor KAN1-like isoform X2 [Cucumis sativus][more]
gi|778679933|ref|XP_011651217.1|1.7e-9572.86PREDICTED: transcription repressor KAN1-like isoform X3 [Cucumis sativus][more]
gi|778679936|ref|XP_011651218.1|8.3e-9572.50PREDICTED: transcription repressor KAN1-like isoform X4 [Cucumis sativus][more]
gi|659112399|ref|XP_008456200.1|4.5e-7286.71PREDICTED: transcription repressor KAN1-like isoform X2 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeobox-like_sf
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0010158 abaxial cell fate specification
biological_process GO:0009887 animal organ morphogenesis
biological_process GO:0048481 plant ovule development
biological_process GO:0009944 polarity specification of adaxial/abaxial axis
biological_process GO:0009956 radial pattern formation
biological_process GO:0010051 xylem and phloem pattern formation
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G002660.1Lsi05G002660.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009057Homeodomain-likeGENE3DG3DSA:1.10.10.60coord: 252..277
score: 1.
NoneNo IPR availablePANTHERPTHR31496FAMILY NOT NAMEDcoord: 238..277
score: 4.0E-51coord: 1..185
score: 4.0
NoneNo IPR availablePANTHERPTHR31496:SF3SUBFAMILY NOT NAMEDcoord: 238..277
score: 4.0E-51coord: 1..185
score: 4.0

The following gene(s) are paralogous to this gene:

None