Carg24231 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24231
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Glutamyl-tRNA (Gln) amidotransferase subunit C
Location	Cucurbita_argyrosperma_scaffold_191 : 103192 .. 104019 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTTCTGCTATTTCATATATTATGCAGTATCAAGATCATATTCACGTGATGAGCGCAAACATTATGATCTTTTTGGAAAAGTCCGGCCTGGTGATAAGGAATTCAGGAAAGCCTGGGAAAAACAGATGAATGAAGAAGAATCTACTCTATGGACAGACAGCGACGATGAGAAAGACGATAAAGAAGCGAAAAAAAACCGCCTCGAAGATGAGATAAGAAAGGTAAGGCAGCAGGCAAAAGAACACTCAGACTTGATTGATGCCGATGATAGTGATGAATTATGGAGTGTTTGGTCAGGGAGCGACGAAGAGAAGACCTTGTGGACTGGTAGTGAAGACGACGACGACGACGATACTCCTACAGAGGCCTACCCGAATGAAAGTAGTGACAAATACATAGATAGACTATTTGAATTCGAGGAAACATCGAAATACCGAACGATTTCGGAGCTATTGAAATCTGAACAGAAACCAGAAGAGTTATCCCCTGGAAAACAAGCCAGGAAAGTAGCAGTGGAGAATGCATTGAAGAAGCTGAAGAAAGGACCGGATGGGCGATATACGAATGTGTGGGAGGTGATGAGTGATGTAGATATCTTAATAGGAGCATTCGAAAACATAGTGTCAGGGCCTGAATATGCAGAGCTGAGGCAGGGAGGGGAGAAGAAACTGAATATGCAATTTTTCAAGGACATACAAGCACGCATGAGAGATCCAAATTTCAAATTCTCACAAGAACTGAAGCTGAAACCAAAGAGCAAAATGGTTTCCCAGAAGAAGTGGCAGAAGGCTCAGTCTAGACGAAGGAAAGCACAGAAGCGATGA

mRNA sequence

ATGAGCTTCTGCTATTTCATATATTATGCAGTATCAAGATCATATTCACGTGATGAGCGCAAACATTATGATCTTTTTGGAAAAGTCCGGCCTGGTGATAAGGAATTCAGGAAAGCCTGGGAAAAACAGATGAATGAAGAAGAATCTACTCTATGGACAGACAGCGACGATGAGAAAGACGATAAAGAAGCGAAAAAAAACCGCCTCGAAGATGAGATAAGAAAGGTAAGGCAGCAGGCAAAAGAACACTCAGACTTGATTGATGCCGATGATAGTGATGAATTATGGAGTGTTTGGTCAGGGAGCGACGAAGAGAAGACCTTGTGGACTGGTAGTGAAGACGACGACGACGACGATACTCCTACAGAGGCCTACCCGAATGAAAGTAGTGACAAATACATAGATAGACTATTTGAATTCGAGGAAACATCGAAATACCGAACGATTTCGGAGCTATTGAAATCTGAACAGAAACCAGAAGAGTTATCCCCTGGAAAACAAGCCAGGAAAGTAGCAGTGGAGAATGCATTGAAGAAGCTGAAGAAAGGACCGGATGGGCGATATACGAATGTGTGGGAGGTGATGAGTGATGTAGATATCTTAATAGGAGCATTCGAAAACATAGTGTCAGGGCCTGAATATGCAGAGCTGAGGCAGGGAGGGGAGAAGAAACTGAATATGCAATTTTTCAAGGACATACAAGCACGCATGAGAGATCCAAATTTCAAATTCTCACAAGAACTGAAGCTGAAACCAAAGAGCAAAATGGTTTCCCAGAAGAAGTGGCAGAAGGCTCAGTCTAGACGAAGGAAAGCACAGAAGCGATGA

Coding sequence (CDS)

ATGAGCTTCTGCTATTTCATATATTATGCAGTATCAAGATCATATTCACGTGATGAGCGCAAACATTATGATCTTTTTGGAAAAGTCCGGCCTGGTGATAAGGAATTCAGGAAAGCCTGGGAAAAACAGATGAATGAAGAAGAATCTACTCTATGGACAGACAGCGACGATGAGAAAGACGATAAAGAAGCGAAAAAAAACCGCCTCGAAGATGAGATAAGAAAGGTAAGGCAGCAGGCAAAAGAACACTCAGACTTGATTGATGCCGATGATAGTGATGAATTATGGAGTGTTTGGTCAGGGAGCGACGAAGAGAAGACCTTGTGGACTGGTAGTGAAGACGACGACGACGACGATACTCCTACAGAGGCCTACCCGAATGAAAGTAGTGACAAATACATAGATAGACTATTTGAATTCGAGGAAACATCGAAATACCGAACGATTTCGGAGCTATTGAAATCTGAACAGAAACCAGAAGAGTTATCCCCTGGAAAACAAGCCAGGAAAGTAGCAGTGGAGAATGCATTGAAGAAGCTGAAGAAAGGACCGGATGGGCGATATACGAATGTGTGGGAGGTGATGAGTGATGTAGATATCTTAATAGGAGCATTCGAAAACATAGTGTCAGGGCCTGAATATGCAGAGCTGAGGCAGGGAGGGGAGAAGAAACTGAATATGCAATTTTTCAAGGACATACAAGCACGCATGAGAGATCCAAATTTCAAATTCTCACAAGAACTGAAGCTGAAACCAAAGAGCAAAATGGTTTCCCAGAAGAAGTGGCAGAAGGCTCAGTCTAGACGAAGGAAAGCACAGAAGCGATGA

Protein sequence

MSFCYFIYYAVSRSYSRDERKHYDLFGKVRPGDKEFRKAWEKQMNEEESTLWTDSDDEKDDKEAKKNRLEDEIRKVRQQAKEHSDLIDADDSDELWSVWSGSDEEKTLWTGSEDDDDDDTPTEAYPNESSDKYIDRLFEFEETSKYRTISELLKSEQKPEELSPGKQARKVAVENALKKLKKGPDGRYTNVWEVMSDVDILIGAFENIVSGPEYAELRQGGEKKLNMQFFKDIQARMRDPNFKFSQELKLKPKSKMVSQKKWQKAQSRRRKAQKR

Homology

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BLAST of Carg24231 vs. NCBI nr
Match: XP_022935143.1 (uncharacterized protein LOC111442102 [Cucurbita moschata])

HSP 1 Score: 371.7 bits (953), Expect = 2.1e-99
Identity = 212/267 (79.40%), Postives = 213/267 (79.78%), Query Frame = 0


Query: 9   YAVSRSYSRDERKHYDLFGKVRPGDKEFRKAWEKQMNEEESTLWTDSDXXXXXXXXXXXX 68
           + VSRSYSRDERKHYDLFGKVRPGDKEFRKAWEKQMNEEESTLWTDSD            
Sbjct: 48  FQVSRSYSRDERKHYDLFGKVRPGDKEFRKAWEKQMNEEESTLWTDSDNEKDDKEAKKNR 107

Query: 69  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSXXXXXXXXXXXXXXXXXXPTEAYPNE 128
                                           GS         XXXXXXXXXPTEAYPNE
Sbjct: 108 LEDEIRKVRQQAKEHSDLIDADDSDELWSVWSGSDQEKTLWTGXXXXXXXXXPTEAYPNE 167

Query: 129 SSDKYIDRLFEFEETSKYRTISELLKSEQKPEELSPGKQARKVAVENALKKLKKGPDGRY 188
           SSDKYIDRLFEFEETSKYRTISELLKSEQKPEELSPGKQARKVAVENALKKLKKGPDGRY
Sbjct: 168 SSDKYIDRLFEFEETSKYRTISELLKSEQKPEELSPGKQARKVAVENALKKLKKGPDGRY 227

Query: 189 TNVWEVMSDVDILIGAFENIVSGPEYAELRQGGEKKLNMQFFKDIQARMRDPNFKFSQEL 248
           TNVWEVMSDVDILIGAFENIVSGPEYAELRQGGEKKLNMQFFKDIQARMRDPNFKFSQEL
Sbjct: 228 TNVWEVMSDVDILIGAFENIVSGPEYAELRQGGEKKLNMQFFKDIQARMRDPNFKFSQEL 287

Query: 249 KLKPKSKMVSQKKWQKAQSRRRKAQKR 276
           KLKPKSKMVSQKKWQKAQSRRRKAQKR
Sbjct: 288 KLKPKSKMVSQKKWQKAQSRRRKAQKR 314

[Close]

BLAST of Carg24231 vs. NCBI nr
Match: XP_022983260.1 (uncharacterized protein LOC111481894 [Cucurbita maxima])

HSP 1 Score: 366.3 bits (939), Expect = 9.0e-98
Identity = 260/267 (97.38%), Postives = 266/267 (99.63%), Query Frame = 0


Query: 9   YAVSRSYSRDERKHYDLFGKVRPGDKEFRKAWEKQMNEEESTLWTDSDXXXXXXXXXXXX 68
           + VSRSYSRDERKHYDLFGKVRPGDKEFRKAWEKQMN+E+STLWTDSDXXXXXXXXXXXX
Sbjct: 48  FQVSRSYSRDERKHYDLFGKVRPGDKEFRKAWEKQMNKEQSTLWTDSDXXXXXXXXXXXX 107

Query: 69  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSXXXXXXXXXXXXXXXXXXPTEAYPNE 128
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSXXXXXXXXXXXXXXXXXXPTEAYPNE
Sbjct: 108 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSXXXXXXXXXXXXXXXXXXPTEAYPNE 167

Query: 129 SSDKYIDRLFEFEETSKYRTISELLKSEQKPEELSPGKQARKVAVENALKKLKKGPDGRY 188
           SSDKYIDR+FEFEETSKYRTISELLKSEQ+PEELSPGKQARKVAVENALKKLKKGPDGRY
Sbjct: 168 SSDKYIDRIFEFEETSKYRTISELLKSEQEPEELSPGKQARKVAVENALKKLKKGPDGRY 227

Query: 189 TNVWEVMSDVDILIGAFENIVSGPEYAELRQGGEKKLNMQFFKDIQARMRDPNFKFSQEL 248
           TNVWEVMSD+DILIGAFENIVSGPEYAELRQGGEKKLNMQFFKDIQARMRDPNFKFSQEL
Sbjct: 228 TNVWEVMSDIDILIGAFENIVSGPEYAELRQGGEKKLNMQFFKDIQARMRDPNFKFSQEL 287

Query: 249 KLKPKSKMVSQKKWQKAQSRRRKAQKR 276
           KLKPKSKMVSQKKWQKAQSRRRKAQKR
Sbjct: 288 KLKPKSKMVSQKKWQKAQSRRRKAQKR 314

[Close]

BLAST of Carg24231 vs. NCBI nr
Match: XP_023528329.1 (uncharacterized protein LOC111791283 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 364.8 bits (935), Expect = 2.6e-97
Identity = 216/267 (80.90%), Postives = 217/267 (81.27%), Query Frame = 0


Query: 9   YAVSRSYSRDERKHYDLFGKVRPGDKEFRKAWEKQMNEEESTLWTDSDXXXXXXXXXXXX 68
           +  SRSYSRDERKHYDLFGKVRPGDKEFRKAWEKQM EEESTLWTDSD   XXXX     
Sbjct: 48  FQASRSYSRDERKHYDLFGKVRPGDKEFRKAWEKQMKEEESTLWTDSDDEKXXXXAKKNR 107

Query: 69  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSXXXXXXXXXXXXXXXXXXPTEAYPNE 128
                                           GS      XXXXXXXXXXXX TEAYPNE
Sbjct: 108 LEDEIRKVRQQAKEHSDLIDADDSDELWSVLSGSDEEKTLXXXXXXXXXXXXXTEAYPNE 167

Query: 129 SSDKYIDRLFEFEETSKYRTISELLKSEQKPEELSPGKQARKVAVENALKKLKKGPDGRY 188
           SSDKYIDRLFEFEETSKYRTISELLKSEQKPEELSPGKQARKVAVENALKKLKKGPDGRY
Sbjct: 168 SSDKYIDRLFEFEETSKYRTISELLKSEQKPEELSPGKQARKVAVENALKKLKKGPDGRY 227

Query: 189 TNVWEVMSDVDILIGAFENIVSGPEYAELRQGGEKKLNMQFFKDIQARMRDPNFKFSQEL 248
           TNVWEVMSDVDILIGAFENIVSGPEYAELRQGGEKKLNMQFFKDIQARMRDPNFKFSQEL
Sbjct: 228 TNVWEVMSDVDILIGAFENIVSGPEYAELRQGGEKKLNMQFFKDIQARMRDPNFKFSQEL 287

Query: 249 KLKPKSKMVSQKKWQKAQSRRRKAQKR 276
           KLKPKSKMVSQKKWQKAQSRRRKAQKR
Sbjct: 288 KLKPKSKMVSQKKWQKAQSRRRKAQKR 314

[Close]

BLAST of Carg24231 vs. NCBI nr
Match: XP_022143293.1 (uncharacterized protein LOC111013198 [Momordica charantia])

HSP 1 Score: 351.3 bits (900), Expect = 3.0e-93
Identity = 209/267 (78.28%), Postives = 220/267 (82.40%), Query Frame = 0


Query: 9   YAVSRSYSRDERKHYDLFGKVRPGDKEFRKAWEKQMNEEESTLWTDSDXXXXXXXXXXXX 68
           + VSRSYSR ERK YDLFGKV+PGDKEFRKAWEKQMNEEESTLWTDS+            
Sbjct: 47  FRVSRSYSRGERKPYDLFGKVKPGDKEFRKAWEKQMNEEESTLWTDSEDEADNKEGKKSR 106

Query: 69  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSXXXXXXXXXXXXXXXXXXPTEAYPNE 128
                                XXXXX    X GSXXXXXXXXXXXXX     PTEAYPNE
Sbjct: 107 LEHEIKKVRQQAKEHSDLIDAXXXXXLWSVXSGSXXXXXXXXXXXXXDDDDIPTEAYPNE 166

Query: 129 SSDKYIDRLFEFEETSKYRTISELLKSEQKPEELSPGKQARKVAVENALKKLKKGPDGRY 188
           SSDKYID+LFEFEETSKYRTISELLK+EQ+PEELSPGKQARK+AVENALKKLKKGPDGRY
Sbjct: 167 SSDKYIDKLFEFEETSKYRTISELLKAEQEPEELSPGKQARKLAVENALKKLKKGPDGRY 226

Query: 189 TNVWEVMSDVDILIGAFENIVSGPEYAELRQGGEKKLNMQFFKDIQARMRDPNFKFSQEL 248
           TNVWEVMSD+DILIGAFENIVSGPEYAELRQGG+KKLNMQFFKDIQARMRDPNFKFS EL
Sbjct: 227 TNVWEVMSDIDILIGAFENIVSGPEYAELRQGGQKKLNMQFFKDIQARMRDPNFKFSPEL 286

Query: 249 KLKPKSKMVSQKKWQKAQSRRRKAQKR 276
           KLKPKSK+V+QKKWQKAQSRRRKAQKR
Sbjct: 287 KLKPKSKLVAQKKWQKAQSRRRKAQKR 313

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BLAST of Carg24231 vs. NCBI nr
Match: XP_008457085.1 (PREDICTED: uncharacterized protein LOC103496851 [Cucumis melo] >XP_008457086.1 PREDICTED: uncharacterized protein LOC103496851 [Cucumis melo])

HSP 1 Score: 345.1 bits (884), Expect = 2.2e-91
Identity = 213/267 (79.78%), Postives = 221/267 (82.77%), Query Frame = 0


Query: 9   YAVSRSYSRDERKHYDLFGKVRPGDKEFRKAWEKQMNEEESTLWTDSDXXXXXXXXXXXX 68
           +  SRSYSR ERKHYDLFG VRPGDKEFRKAWEKQMNEEESTLWT   XXXXXXXXXXX 
Sbjct: 48  FQASRSYSRGERKHYDLFGNVRPGDKEFRKAWEKQMNEEESTLWTXXXXXXXXXXXXXXH 107

Query: 69  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSXXXXXXXXXXXXXXXXXXPTEAYPNE 128
                                           G XXXXXXXXXXXXXXX   PTEAYPNE
Sbjct: 108 LEDEIRKTRQQAKEHSDLIDADDSDELWSVWSGXXXXXXXXXXXXXXXXDDSPTEAYPNE 167

Query: 129 SSDKYIDRLFEFEETSKYRTISELLKSEQKPEELSPGKQARKVAVENALKKLKKGPDGRY 188
            SDKYIDRLFEFEETSKYRTISELLKSEQ+PEELSPGKQARK+AVENALKKLKKGPDGRY
Sbjct: 168 RSDKYIDRLFEFEETSKYRTISELLKSEQEPEELSPGKQARKLAVENALKKLKKGPDGRY 227

Query: 189 TNVWEVMSDVDILIGAFENIVSGPEYAELRQGGEKKLNMQFFKDIQARMRDPNFKFSQEL 248
           TNVWEVMSDVDILIGAFEN+VSGPEYAELRQGG+KKLNMQFFKDIQARMRDPNFKFS EL
Sbjct: 228 TNVWEVMSDVDILIGAFENVVSGPEYAELRQGGQKKLNMQFFKDIQARMRDPNFKFSPEL 287

Query: 249 KLKPKSKMVSQKKWQKAQSRRRKAQKR 276
           KLKPKSK++SQK+WQKAQSRRRKAQKR
Sbjct: 288 KLKPKSKLISQKRWQKAQSRRRKAQKR 314

[Close]

BLAST of Carg24231 vs. TAIR10
Match: AT5G17460.2 (unknown protein)

HSP 1 Score: 248.1 bits (632), Expect = 6.5e-66
Identity = 143/267 (53.56%), Postives = 163/267 (61.05%), Query Frame = 0


Query: 12  SRSYSRDERKHYDLFGKVRPGDKEFRKAWEKQMNEEESTLWT---DSDXXXXXXXXXXXX 71
           +R Y+    K Y+LFG V+PGD +FRK WEK+M E++ TLW+   D              
Sbjct: 64  TRFYASGRGKDYNLFGNVKPGDDDFRKTWEKEM-EDDDTLWSGSEDESNDKTKQESGRNR 123

Query: 72  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSXXXXXXXXXXXXXXXXXXPTEAYPNE 131
                                           GS                  PTE  PNE
Sbjct: 124 LEKEIKKARQQAKDSTDQIDGDDSDELYSVWSGSDEEKTLWTGDEGDDDDDIPTEPRPNE 183

Query: 132 SSDKYIDRLFEFEETSKYRTISELLKSEQKPEELSPGKQARKVAVENALKKLKKGPDGRY 191
           +SDKY+D+LFEFEE  KYRTISELLKSE +PEELSPGK+ARK+AVENALKKL KGPDGRY
Sbjct: 184 ASDKYLDKLFEFEEKPKYRTISELLKSENEPEELSPGKKARKLAVENALKKLNKGPDGRY 243

Query: 192 TNVWEVMSDVDILIGAFENIVSGPEYAELRQGGEKKLNMQFFKDIQARMRDPNFKFSQEL 251
           TNVWEVMSDVDILIGAFENI+SGPEY ELR+GG K+LNMQFFKDIQ RMRDPNFKF+   
Sbjct: 244 TNVWEVMSDVDILIGAFENIISGPEYEELRKGGPKRLNMQFFKDIQTRMRDPNFKFTXXX 303

Query: 252 KLKPKSKMVSQKKWQKAQSRRRKAQKR 276
                        WQKAQSR RKA+KR
Sbjct: 304 XXXXXXXXXXXXXWQKAQSRIRKAKKR 329

[Close]

BLAST of Carg24231 vs. TrEMBL
Match: tr|A0A1S3C5E2|A0A1S3C5E2_CUCME (uncharacterized protein LOC103496851 OS=Cucumis melo OX=3656 GN=LOC103496851 PE=4 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 1.4e-91
Identity = 213/267 (79.78%), Postives = 221/267 (82.77%), Query Frame = 0


Query: 9   YAVSRSYSRDERKHYDLFGKVRPGDKEFRKAWEKQMNEEESTLWTDSDXXXXXXXXXXXX 68
           +  SRSYSR ERKHYDLFG VRPGDKEFRKAWEKQMNEEESTLWT   XXXXXXXXXXX 
Sbjct: 48  FQASRSYSRGERKHYDLFGNVRPGDKEFRKAWEKQMNEEESTLWTXXXXXXXXXXXXXXH 107

Query: 69  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSXXXXXXXXXXXXXXXXXXPTEAYPNE 128
                                           G XXXXXXXXXXXXXXX   PTEAYPNE
Sbjct: 108 LEDEIRKTRQQAKEHSDLIDADDSDELWSVWSGXXXXXXXXXXXXXXXXDDSPTEAYPNE 167

Query: 129 SSDKYIDRLFEFEETSKYRTISELLKSEQKPEELSPGKQARKVAVENALKKLKKGPDGRY 188
            SDKYIDRLFEFEETSKYRTISELLKSEQ+PEELSPGKQARK+AVENALKKLKKGPDGRY
Sbjct: 168 RSDKYIDRLFEFEETSKYRTISELLKSEQEPEELSPGKQARKLAVENALKKLKKGPDGRY 227

Query: 189 TNVWEVMSDVDILIGAFENIVSGPEYAELRQGGEKKLNMQFFKDIQARMRDPNFKFSQEL 248
           TNVWEVMSDVDILIGAFEN+VSGPEYAELRQGG+KKLNMQFFKDIQARMRDPNFKFS EL
Sbjct: 228 TNVWEVMSDVDILIGAFENVVSGPEYAELRQGGQKKLNMQFFKDIQARMRDPNFKFSPEL 287

Query: 249 KLKPKSKMVSQKKWQKAQSRRRKAQKR 276
           KLKPKSK++SQK+WQKAQSRRRKAQKR
Sbjct: 288 KLKPKSKLISQKRWQKAQSRRRKAQKR 314

[Close]

BLAST of Carg24231 vs. TrEMBL
Match: tr|A0A0A0L8W2|A0A0A0L8W2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G185140 PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 9.3e-83
Identity = 210/264 (79.55%), Postives = 217/264 (82.20%), Query Frame = 0


Query: 12  SRSYSRDERKHYDLFGKVRPGDKEFRKAWEKQMNEEESTLWTDSDXXXXXXXXXXXXXXX 71
           SRSYSR E KHYDLFG VRPGDKEFRKAWEKQMNEEESTLWT+SD   XXXXXXX     
Sbjct: 43  SRSYSRGECKHYDLFGTVRPGDKEFRKAWEKQMNEEESTLWTESDDEAXXXXXXXNRLED 102

Query: 72  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSXXXXXXXXXXXXXXXXXXPTEAYPNESSD 131
                            XXXXXXXXXXXX  XXXXXXXXXXXXXXXX  PTEAYPNE SD
Sbjct: 103 EIRKTRQQAKEHSDLIDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIPTEAYPNERSD 162

Query: 132 KYIDRLFEFEETSKYRTISELLKSEQKPEELSPGKQARKVAVENALKKLKKGPDGRYTNV 191
           KYID+LFEFEETSKYRTISELLKSEQ+PEELSPGKQARK+AVENALKKLKKGPDGRYTNV
Sbjct: 163 KYIDKLFEFEETSKYRTISELLKSEQEPEELSPGKQARKLAVENALKKLKKGPDGRYTNV 222

Query: 192 WEVMSDVDILIGAFENIVSGPEYAELRQGGEKKLNMQFFKDIQARMRDPNFKFSQELKLK 251
           WEVMSDVDILIGAFEN+VSGPEYAELRQGG+KKLNMQFFKDIQARMRDPNFKFS      
Sbjct: 223 WEVMSDVDILIGAFENVVSGPEYAELRQGGQKKLNMQFFKDIQARMRDPNFKFSXXXXXX 282

Query: 252 PKSKMVSQKKWQKAQSRRRKAQKR 276
                   K+WQKAQSRRRKAQKR
Sbjct: 283 XXXXXXXXKRWQKAQSRRRKAQKR 306

[Close]

BLAST of Carg24231 vs. TrEMBL
Match: tr|A0A2P5DVW3|A0A2P5DVW3_PARAD (Glutamyl-tRNA (Gln) amidotransferase subunit C OS=Parasponia andersonii OX=3476 GN=PanWU01x14_025970 PE=4 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 1.7e-81
Identity = 183/267 (68.54%), Postives = 206/267 (77.15%), Query Frame = 0


Query: 9   YAVSRSYSRDERKHYDLFGKVRPGDKEFRKAWEKQMNEEESTLWTDSDXXXXXXXXXXXX 68
           +AVSRSY+R  RKHYDLFGK RPGD++FRKAW K+M +EE++LWT S+            
Sbjct: 5   FAVSRSYARGGRKHYDLFGKGRPGDEDFRKAWNKEM-DEETSLWTGSE-DESDEEGGKDN 64

Query: 69  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSXXXXXXXXXXXXXXXXXXPTEAYPNE 128
                                             XXXXXXXXXXX       PTEAYPNE
Sbjct: 65  LEEEIRKVRQQAKEHSELIDGDDSDELRSVWSXXXXXXXXXXXXXGDDDDDIPTEAYPNE 124

Query: 129 SSDKYIDRLFEFEETSKYRTISELLKSEQKPEELSPGKQARKVAVENALKKLKKGPDGRY 188
           +SDK+ID+LFEFEETSKYRTISELLK+EQ+PEELSPGKQARK+AVENALKKLKKGPDGRY
Sbjct: 125 ASDKHIDKLFEFEETSKYRTISELLKAEQEPEELSPGKQARKLAVENALKKLKKGPDGRY 184

Query: 189 TNVWEVMSDVDILIGAFENIVSGPEYAELRQGGEKKLNMQFFKDIQARMRDPNFKFSQEL 248
           TNVWEVMSD+DILIGAFENIVSGPEYAELRQGG K+LN+QFFKDIQARMRDPN+KFS EL
Sbjct: 185 TNVWEVMSDLDILIGAFENIVSGPEYAELRQGGPKRLNIQFFKDIQARMRDPNYKFSPEL 244

Query: 249 KLKPKSKMVSQKKWQKAQSRRRKAQKR 276
           KLKPKSK+VS+KKWQKA+SRRRKA+KR
Sbjct: 245 KLKPKSKLVSRKKWQKAESRRRKARKR 269

[Close]

BLAST of Carg24231 vs. TrEMBL
Match: tr|A0A2P5E752|A0A2P5E752_9ROSA (Glutamyl-tRNA (Gln) amidotransferase subunit C OS=Trema orientalis OX=63057 GN=TorRG33x02_228060 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 1.9e-80
Identity = 181/267 (67.79%), Postives = 205/267 (76.78%), Query Frame = 0


Query: 9   YAVSRSYSRDERKHYDLFGKVRPGDKEFRKAWEKQMNEEESTLWTDSDXXXXXXXXXXXX 68
           +AVSRSY+   RKHYDLFGK RPGD++FRKAW K+M +EE++LWT S+            
Sbjct: 5   FAVSRSYACGGRKHYDLFGKGRPGDEDFRKAWNKEM-DEETSLWTGSE-DESEDEGGKDN 64

Query: 69  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSXXXXXXXXXXXXXXXXXXPTEAYPNE 128
                                             XXXXXXXXXXX       PTEAYPNE
Sbjct: 65  LEEEIRKVRQQAKEHSELIDGDDSDELRSVWSXXXXXXXXXXXXXGDDDDDIPTEAYPNE 124

Query: 129 SSDKYIDRLFEFEETSKYRTISELLKSEQKPEELSPGKQARKVAVENALKKLKKGPDGRY 188
           +SDK+ID+LFEFEETSKYRT+SELLK+EQ+PEELSPGKQARK+AVENALKKLKKGPDGRY
Sbjct: 125 ASDKHIDKLFEFEETSKYRTVSELLKAEQEPEELSPGKQARKLAVENALKKLKKGPDGRY 184

Query: 189 TNVWEVMSDVDILIGAFENIVSGPEYAELRQGGEKKLNMQFFKDIQARMRDPNFKFSQEL 248
           TNVWEVMSD+DILIGAFENIVSGPEYAELRQGG K+LN+QFFKDIQARMRDPN+KFS EL
Sbjct: 185 TNVWEVMSDLDILIGAFENIVSGPEYAELRQGGPKRLNIQFFKDIQARMRDPNYKFSPEL 244

Query: 249 KLKPKSKMVSQKKWQKAQSRRRKAQKR 276
           KLKPKSK+VS+KKWQKA+SRRRKA+KR
Sbjct: 245 KLKPKSKLVSRKKWQKAESRRRKARKR 269

[Close]

BLAST of Carg24231 vs. TrEMBL
Match: tr|A0A2N9IJQ7|A0A2N9IJQ7_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS52252 PE=4 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 1.6e-79
Identity = 179/275 (65.09%), Postives = 205/275 (74.55%), Query Frame = 0


Query: 1   MSFCYFIYYAVSRSYSRDERKHYDLFGKVRPGDKEFRKAWEKQMNEEESTLWTDSDXXXX 60
           ++F +   +  SR+Y+R  RKHYDLFGK + GD++FR AW+K+M +E+++LWT S+    
Sbjct: 520 INFRFCPTFQASRAYARGGRKHYDLFGKGKLGDEDFRTAWKKEM-DEDTSLWTGSEDESD 579

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSXXXXXXXXXXXXXXXXXX 120
                                                   G XXXXXXXXXXXX      
Sbjct: 580 DKKDPKSQLEDEIRRVRQQAKEHSDLIDADDSDELRSVWSGXXXXXXXXXXXXXDDDNDI 639

Query: 121 PTEAYPNESSDKYIDRLFEFEETSKYRTISELLKSEQKPEELSPGKQARKVAVENALKKL 180
           PTEAYPNESSDKYID+LFEFE+  KYRT+SELLK+E +PEELSPGKQARK+AVENALKKL
Sbjct: 640 PTEAYPNESSDKYIDKLFEFEDMPKYRTLSELLKAEDEPEELSPGKQARKIAVENALKKL 699

Query: 181 KKGPDGRYTNVWEVMSDVDILIGAFENIVSGPEYAELRQGGEKKLNMQFFKDIQARMRDP 240
           KKGPDGRYTNVWEVMSD+DILIGAFENIVSGPEY ELRQGG KKLNMQFFKDIQARMRDP
Sbjct: 700 KKGPDGRYTNVWEVMSDIDILIGAFENIVSGPEYVELRQGGPKKLNMQFFKDIQARMRDP 759

Query: 241 NFKFSQELKLKPKSKMVSQKKWQKAQSRRRKAQKR 276
           N+KFS ELKLKPKSK+VS+KKWQKAQSRRRKAQKR
Sbjct: 760 NYKFSPELKLKPKSKLVSRKKWQKAQSRRRKAQKR 793

The following BLAST results are available for this feature:

BLAST of Carg24231 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022935143.1	2.1e-99	79.40	uncharacterized protein LOC111442102 [Cucurbita moschata]	[more]
XP_022983260.1	9.0e-98	97.38	uncharacterized protein LOC111481894 [Cucurbita maxima]	[more]
XP_023528329.1	2.6e-97	80.90	uncharacterized protein LOC111791283 [Cucurbita pepo subsp. pepo]	[more]
XP_022143293.1	3.0e-93	78.28	uncharacterized protein LOC111013198 [Momordica charantia]	[more]
XP_008457085.1	2.2e-91	79.78	PREDICTED: uncharacterized protein LOC103496851 [Cucumis melo] >XP_008457086.1 P...	[more]

BLAST of Carg24231 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G17460.2	6.5e-66	53.56	unknown protein	[more]

BLAST of Carg24231 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg24231 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C5E2\|A0A1S3C5E2_CUCME	1.4e-91	79.78	uncharacterized protein LOC103496851 OS=Cucumis melo OX=3656 GN=LOC103496851 PE=...	[more]
tr\|A0A0A0L8W2\|A0A0A0L8W2_CUCSA	9.3e-83	79.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G185140 PE=4 SV=1	[more]
tr\|A0A2P5DVW3\|A0A2P5DVW3_PARAD	1.7e-81	68.54	Glutamyl-tRNA (Gln) amidotransferase subunit C OS=Parasponia andersonii OX=3476 ...	[more]
tr\|A0A2P5E752\|A0A2P5E752_9ROSA	1.9e-80	67.79	Glutamyl-tRNA (Gln) amidotransferase subunit C OS=Trema orientalis OX=63057 GN=T...	[more]
tr\|A0A2N9IJQ7\|A0A2N9IJQ7_FAGSY	1.6e-79	65.09	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS52252 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24231-RA	Carg24231-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 59..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 255..275
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 244..275
None	No IPR available	PANTHER	PTHR38393	FAMILY NOT NAMED	coord: 10..275

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24231	Cla013161	Watermelon (97103) v1	carwmB0166
Carg24231	Csa3G185140	Cucumber (Chinese Long) v2	carcuB0196
Carg24231	MELO3C020303	Melon (DHL92) v3.5.1	carmeB0181
Carg24231	ClCG05G010840	Watermelon (Charleston Gray)	carwcgB0168
Carg24231	CSPI03G17500	Wild cucumber (PI 183967)	carcpiB0203
Carg24231	Cucsa.108350	Cucumber (Gy14) v1	carcgyB0216
Carg24231	CmaCh14G008580	Cucurbita maxima (Rimu)	carcmaB0240
Carg24231	CmoCh14G008720	Cucurbita moschata (Rifu)	carcmoB0248
Carg24231	Lsi05G002920	Bottle gourd (USVL1VR-Ls)	carlsiB158
Carg24231	Cp4.1LG03g05720	Cucurbita pepo (Zucchini)	carcpeB0257
Carg24231	CsGy3G017530	Cucumber (Gy14) v2	carcgybB0190
Carg24231	MELO3C020303.2	Melon (DHL92) v3.6.1	carmedB0185
Carg24231	CsaV3_3G017670	Cucumber (Chinese Long) v3	carcucB0203
Carg24231	Cla97C05G093150	Watermelon (97103) v2	carwmbB0181
Carg24231	Bhi01G001337	Wax gourd	carwgoB0227

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24231	Silver-seed gourd	carcarB213
Carg24231	Cucurbita maxima (Rimu)	carcmaB0241
Carg24231	Cucurbita moschata (Rifu)	carcmoB0249
Carg24231	Cucurbita pepo (Zucchini)	carcpeB0256