Carg24185 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24185
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	UvrABC system protein C
Location	Cucurbita_argyrosperma_scaffold_221 : 230854 .. 231740 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACAAATAGTGTTCATAATTCTGTAGAATATCGAGAACAATGTTGCGTTGTTCTGTTCATTAAAAAGGAGTCTGTAAAAGACAAAAAGCGAAGGCCATCGGGCCGCGGGGCCATCGCCATCATCATCATCATCATCTCCTGGACTGCTCACTGCCCATATATGAGGATTCAGGAGGTATTGTTTATTTAGAAAGCAAAGGATTCTTGCGCTCTGTTCTTTTCCATCGAACATATTCCCTTCTTTTTCTTCTTCTTATGCCCATTTTAATTCTCTGTTGCTATGTTCTAGCTTGCGGGTATGGGAAATTGCGTGTTGAAAGTCGCCGGAGAAAGGGGGGATGTGGTGAAAGTGGTGACTGTCGACGGCGGAATTATGGAGCTTTATGCGCCGATTACGGCGGAGTGCATAACAGGGGAATATCCCGGCCACGCCATTTTTAAGAGCCGAAGTATATTCTCGGAGCCCCTTCTTCATAAGGATGAGCTTCACGCGGGTCAAGTGTATTACCTTCTCCCGCTTAACCCTTACAAGCCCTCTGCTAAAATCGAGGCGGACGCGCCCAGCGTTGTTTCCACGCCGTATCGGATGTCGACGTGCGAGTCGCAGAATGCGGTTGCGAAGAAGCGGGCGGCGGAGGGGGAGGCGGAGGTGTTTCCGAAGTATAGTAGTACGGGCGTTTGGAAGGTGAAGCTGGTGATTTGCCCGGAACAGCTGTCGGAGATTTTGAAGCAGGGTAATCGTACGGAGGAGTTGATTGAGAACGTGAGGACGGTGGCTAAGTGTGGAAACGGCGTCGGATCGGCTGCTAGCTCCGATCATTCCAGTGTGGCAGGGAGCTGGAAGGGATCCGCCATGGATAAGCTCCAGTATGGACTGAAATAA

mRNA sequence

ATGAAACAAATAGAGTCTGTAAAAGACAAAAAGCGAAGGCCATCGGGCCGCGGGGCCATCGCCATCATCATCATCATCATCTCCTGGACTGCTCACTGCCCATATATGAGGATTCAGGAGCTTGCGGGTATGGGAAATTGCGTGTTGAAAGTCGCCGGAGAAAGGGGGGATGTGGTGAAAGTGGTGACTGTCGACGGCGGAATTATGGAGCTTTATGCGCCGATTACGGCGGAGTGCATAACAGGGGAATATCCCGGCCACGCCATTTTTAAGAGCCGAAGTATATTCTCGGAGCCCCTTCTTCATAAGGATGAGCTTCACGCGGGTCAAGTGTATTACCTTCTCCCGCTTAACCCTTACAAGCCCTCTGCTAAAATCGAGGCGGACGCGCCCAGCGTTGTTTCCACGCCGTATCGGATGTCGACGTGCGAGTCGCAGAATGCGGTTGCGAAGAAGCGGGCGGCGGAGGGGGAGGCGGAGGTGTTTCCGAAGTATAGTAGTACGGGCGTTTGGAAGGTGAAGCTGGTGATTTGCCCGGAACAGCTGTCGGAGATTTTGAAGCAGGGTAATCGTACGGAGGAGTTGATTGAGAACGTGAGGACGGTGGCTAAGTGTGGAAACGGCGTCGGATCGGCTGCTAGCTCCGATCATTCCAGTGTGGCAGGGAGCTGGAAGGGATCCGCCATGGATAAGCTCCAGTATGGACTGAAATAA

Coding sequence (CDS)

ATGAAACAAATAGAGTCTGTAAAAGACAAAAAGCGAAGGCCATCGGGCCGCGGGGCCATCGCCATCATCATCATCATCATCTCCTGGACTGCTCACTGCCCATATATGAGGATTCAGGAGCTTGCGGGTATGGGAAATTGCGTGTTGAAAGTCGCCGGAGAAAGGGGGGATGTGGTGAAAGTGGTGACTGTCGACGGCGGAATTATGGAGCTTTATGCGCCGATTACGGCGGAGTGCATAACAGGGGAATATCCCGGCCACGCCATTTTTAAGAGCCGAAGTATATTCTCGGAGCCCCTTCTTCATAAGGATGAGCTTCACGCGGGTCAAGTGTATTACCTTCTCCCGCTTAACCCTTACAAGCCCTCTGCTAAAATCGAGGCGGACGCGCCCAGCGTTGTTTCCACGCCGTATCGGATGTCGACGTGCGAGTCGCAGAATGCGGTTGCGAAGAAGCGGGCGGCGGAGGGGGAGGCGGAGGTGTTTCCGAAGTATAGTAGTACGGGCGTTTGGAAGGTGAAGCTGGTGATTTGCCCGGAACAGCTGTCGGAGATTTTGAAGCAGGGTAATCGTACGGAGGAGTTGATTGAGAACGTGAGGACGGTGGCTAAGTGTGGAAACGGCGTCGGATCGGCTGCTAGCTCCGATCATTCCAGTGTGGCAGGGAGCTGGAAGGGATCCGCCATGGATAAGCTCCAGTATGGACTGAAATAA

Protein sequence

MKQIESVKDKKRRPSGRGAIAIIIIIISWTAHCPYMRIQELAGMGNCVLKVAGERGDVVKVVTVDGGIMELYAPITAECITGEYPGHAIFKSRSIFSEPLLHKDELHAGQVYYLLPLNPYKPSAKIEADAPSVVSTPYRMSTCESQNAVAKKRAAEGEAEVFPKYSSTGVWKVKLVICPEQLSEILKQGNRTEELIENVRTVAKCGNGVGSAASSDHSSVAGSWKGSAMDKLQYGLK

Homology

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BLAST of Carg24185 vs. NCBI nr
Match: XP_022962561.1 (uncharacterized protein LOC111462928 [Cucurbita moschata])

HSP 1 Score: 399.8 bits (1026), Expect = 6.4e-108
Identity = 200/202 (99.01%), Postives = 201/202 (99.50%), Query Frame = 0


Query: 36  MRIQELAGMGNCVLKVAGERGDVVKVVTVDGGIMELYAPITAECITGEYPGHAIFKSRSI 95
           MRIQELAGMGNCVLKVAGERGD+VKVVTVDGGIMELYAPITAECITGEYPGHAIFKSRSI
Sbjct: 1   MRIQELAGMGNCVLKVAGERGDMVKVVTVDGGIMELYAPITAECITGEYPGHAIFKSRSI 60

Query: 96  FSEPLLHKDELHAGQVYYLLPLNPYKPSAKIEADAPSVVSTPYRMSTCESQNAVAKKRAA 155
           FSEPLLHKDELHAGQVYYLLPLNPYKPSAKIEADAPSVVSTPYRMSTCESQNAVAKKRAA
Sbjct: 61  FSEPLLHKDELHAGQVYYLLPLNPYKPSAKIEADAPSVVSTPYRMSTCESQNAVAKKRAA 120

Query: 156 EGEAEVFPKYSSTGVWKVKLVICPEQLSEILKQGNRTEELIENVRTVAKCGNGVGSAASS 215
           EGEAEVFPKYSSTGVWKVKLVICPEQLSEILKQGNRTEELIENVRTVAKCGNGVGSAASS
Sbjct: 121 EGEAEVFPKYSSTGVWKVKLVICPEQLSEILKQGNRTEELIENVRTVAKCGNGVGSAASS 180

Query: 216 DHSSVAGSWKGSAMDKLQYGLK 238
           DHSSVAGSWKGSAMDKL YGLK
Sbjct: 181 DHSSVAGSWKGSAMDKLPYGLK 202

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BLAST of Carg24185 vs. NCBI nr
Match: XP_022975258.1 (uncharacterized protein LOC111474379 [Cucurbita maxima])

HSP 1 Score: 393.3 bits (1009), Expect = 5.9e-106
Identity = 198/202 (98.02%), Postives = 198/202 (98.02%), Query Frame = 0


Query: 36  MRIQELAGMGNCVLKVAGERGDVVKVVTVDGGIMELYAPITAECITGEYPGHAIFKSRSI 95
           MRIQEL  MGNCVLKVAGER DVVKVVTVDGGIMELYAPITAECITGEYPGHAIFKSRSI
Sbjct: 1   MRIQELPDMGNCVLKVAGERVDVVKVVTVDGGIMELYAPITAECITGEYPGHAIFKSRSI 60

Query: 96  FSEPLLHKDELHAGQVYYLLPLNPYKPSAKIEADAPSVVSTPYRMSTCESQNAVAKKRAA 155
           FSEPLLHKDELH GQVYYLLPLNPYKPSAKIEADAPSVVSTPYRMSTCESQNAVAKKRAA
Sbjct: 61  FSEPLLHKDELHEGQVYYLLPLNPYKPSAKIEADAPSVVSTPYRMSTCESQNAVAKKRAA 120

Query: 156 EGEAEVFPKYSSTGVWKVKLVICPEQLSEILKQGNRTEELIENVRTVAKCGNGVGSAASS 215
           EGEAEVFPKYSSTGVWKVKLVICPEQLSEILKQGNRTEELIENVRTVAKCGNGVGSAASS
Sbjct: 121 EGEAEVFPKYSSTGVWKVKLVICPEQLSEILKQGNRTEELIENVRTVAKCGNGVGSAASS 180

Query: 216 DHSSVAGSWKGSAMDKLQYGLK 238
           DHSSVAGSWKGSAMDKLQYGLK
Sbjct: 181 DHSSVAGSWKGSAMDKLQYGLK 202

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BLAST of Carg24185 vs. NCBI nr
Match: XP_023540170.1 (uncharacterized protein LOC111800623 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 392.9 bits (1008), Expect = 7.8e-106
Identity = 198/202 (98.02%), Postives = 198/202 (98.02%), Query Frame = 0


Query: 36  MRIQELAGMGNCVLKVAGERGDVVKVVTVDGGIMELYAPITAECITGEYPGHAIFKSRSI 95
           MRIQEL GMGNCVLKVAGER DVVKVVTVDGGIMELYAPITAECITGEYPGHAIF SRSI
Sbjct: 1   MRIQELPGMGNCVLKVAGERVDVVKVVTVDGGIMELYAPITAECITGEYPGHAIFTSRSI 60

Query: 96  FSEPLLHKDELHAGQVYYLLPLNPYKPSAKIEADAPSVVSTPYRMSTCESQNAVAKKRAA 155
           FSEPLLHKDELHAGQVYYLLPLNPYKPSAKIEADAPSVVSTPYRMSTCESQNAVAKKRAA
Sbjct: 61  FSEPLLHKDELHAGQVYYLLPLNPYKPSAKIEADAPSVVSTPYRMSTCESQNAVAKKRAA 120

Query: 156 EGEAEVFPKYSSTGVWKVKLVICPEQLSEILKQGNRTEELIENVRTVAKCGNGVGSAASS 215
           EGEAEVFPKYSSTGVWKVKLVICPEQLSEILKQGNRTEELIENVRTVAKCGNGVGSAASS
Sbjct: 121 EGEAEVFPKYSSTGVWKVKLVICPEQLSEILKQGNRTEELIENVRTVAKCGNGVGSAASS 180

Query: 216 DHSSVAGSWKGSAMDKLQYGLK 238
           DHSSVAGSWKGSAMDK QYGLK
Sbjct: 181 DHSSVAGSWKGSAMDKPQYGLK 202

[Close]

BLAST of Carg24185 vs. NCBI nr
Match: XP_022974256.1 (uncharacterized protein LOC111472889 [Cucurbita maxima])

HSP 1 Score: 391.0 bits (1003), Expect = 3.0e-105
Identity = 197/202 (97.52%), Postives = 197/202 (97.52%), Query Frame = 0


Query: 36  MRIQELAGMGNCVLKVAGERGDVVKVVTVDGGIMELYAPITAECITGEYPGHAIFKSRSI 95
           MRIQEL  MGNCVLKVAGER DVVKVVTVDGGIMELYAPITAECITGEYPGHAIFKSRSI
Sbjct: 1   MRIQELPDMGNCVLKVAGERVDVVKVVTVDGGIMELYAPITAECITGEYPGHAIFKSRSI 60

Query: 96  FSEPLLHKDELHAGQVYYLLPLNPYKPSAKIEADAPSVVSTPYRMSTCESQNAVAKKRAA 155
           FSEPLLHKDELH GQVYYLLPLNPYKPSAKIEADAPSVVSTPYRMSTCESQNAVAKKRAA
Sbjct: 61  FSEPLLHKDELHEGQVYYLLPLNPYKPSAKIEADAPSVVSTPYRMSTCESQNAVAKKRAA 120

Query: 156 EGEAEVFPKYSSTGVWKVKLVICPEQLSEILKQGNRTEELIENVRTVAKCGNGVGSAASS 215
           E EAEVFPKYSSTGVWKVKLVICPEQLSEILKQGNRTEELIENVRTVAKCGNGVGSAASS
Sbjct: 121 EAEAEVFPKYSSTGVWKVKLVICPEQLSEILKQGNRTEELIENVRTVAKCGNGVGSAASS 180

Query: 216 DHSSVAGSWKGSAMDKLQYGLK 238
           DHSSVAGSWKGSAMDKLQYGLK
Sbjct: 181 DHSSVAGSWKGSAMDKLQYGLK 202

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BLAST of Carg24185 vs. NCBI nr
Match: XP_022144608.1 (uncharacterized protein LOC111014247 [Momordica charantia])

HSP 1 Score: 265.8 bits (678), Expect = 1.4e-67
Identity = 144/199 (72.36%), Postives = 155/199 (77.89%), Query Frame = 0


Query: 44  MGNCVLKVAGE--RGDVVKVVTVDGGIMELYAPITAECITGEYPGHAIFKSRSIFSEPLL 103
           MGNCVLK      R DVVKVVT DGGIMEL+AP+TAECITGEYPGHAIFKSRSIFSEPLL
Sbjct: 1   MGNCVLKGLHPEIRDDVVKVVTADGGIMELFAPVTAECITGEYPGHAIFKSRSIFSEPLL 60

Query: 104 HKDELHAGQVYYLLPLNPYKPSAKIEADAPSVVSTPYRMSTCESQNAVAKKRAAEGEAEV 163
           HK+ELHAG+VYYLLPLNPYKPSA   ADA SV+STPYRMST                  V
Sbjct: 61  HKEELHAGEVYYLLPLNPYKPSA-ANADAGSVLSTPYRMST----KRAGXXXXXXXXXXV 120

Query: 164 FPKYSSTGVWKVKLVICPEQLSEILKQGNRTEELIENVRTVAKCGNGVGSAASSDHSSVA 223
           FPKYSS+GVWKVKLVI PEQLS+IL   +RTEELIENVRTVAKCGNGVGSA +SDHSSVA
Sbjct: 121 FPKYSSSGVWKVKLVISPEQLSQILSHDSRTEELIENVRTVAKCGNGVGSAPNSDHSSVA 180

Query: 224 GSWKGS---AMDKLQYGLK 238
            SWKGS   +  +  YG K
Sbjct: 181 SSWKGSVSASTVEFDYGFK 194

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BLAST of Carg24185 vs. TAIR10
Match: AT3G61920.1 (unknown protein)

HSP 1 Score: 142.9 bits (359), Expect = 2.5e-34
Identity = 92/199 (46.23%), Postives = 116/199 (58.29%), Query Frame = 0


Query: 44  MGNCVLKVAG-------ERGDVVKVVTVDGGIMELYAPITAECITGEYPGHAIFKSRSI- 103
           MGNCV K  G       +   ++KVVT +GG+MEL+ PI AE IT E+PGH I  S S+ 
Sbjct: 1   MGNCVFKGNGGSRKLYDKDDSLIKVVTPNGGVMELHPPIFAEFITNEFPGHVIHDSLSLR 60

Query: 104 -FSEPLLHKDELHAGQVYYLLPLNPYKPSAKIEADAPSVVSTPYRMSTCESQNAVAKKRA 163
             S PLLH +EL  G +YYLLPL+    +A  + D+   +STPYRMS             
Sbjct: 61  HSSPPLLHGEELFPGNIYYLLPLSS-SAAATAQLDSSDQLSTPYRMSF------------ 120

Query: 164 AEGEAEVFPKYS--STGVWKVKLVICPEQLSEILKQGNRTEELIENVRTVAK-----CGN 223
             G+  +    S    GVWKV+LVI PEQL+EIL +   TE L+E+VRTVAK     CG 
Sbjct: 121 --GKTPIMAALSGGGCGVWKVRLVISPEQLAEILAEDVETEALVESVRTVAKCGGYGCGG 180

Query: 224 GVGSAASSDHSSVAGSWKG 227
           GV S A+SD  SV  S+KG
Sbjct: 181 GVHSRANSDQLSVTSSFKG 184

[Close]

BLAST of Carg24185 vs. TAIR10
Match: AT1G64700.1 (unknown protein)

HSP 1 Score: 100.1 bits (248), Expect = 1.9e-21
Identity = 65/196 (33.16%), Postives = 104/196 (53.06%), Query Frame = 0


Query: 44  MGNCVLKVAGERGD--VVKVVTVDGGIMELYAPITAECITGEYPGHAIFKSRSIFSEPLL 103
           MGNC+    G+  +  ++KV+  DGG++E Y+P+TA  ++  + GHA+F +  +  +PL 
Sbjct: 1   MGNCLFGGLGDEEEDLLIKVIKSDGGVLEFYSPVTAGFVSHGFSGHALFSAVDLLWKPLA 60

Query: 104 HKDELHAGQVYYLLP------LNPYKPSAKIEADAPSVVS-TPYRMS------------- 163
           H   L  GQ YYL P      L  +  S  + +++ S+ + TPYRMS             
Sbjct: 61  HDHLLVPGQSYYLFPNIVSDELKTFVGSCHVRSNSESLSAITPYRMSLDYNHRVLKRSYT 120

Query: 164 TCESQNAVAKKRAAEGEAEVFPKYSSTGVWKVKLVICPEQLSEILKQGNRTEELIENVRT 218
              S+N+  + R  E +       S   +WKV L+I  E+L +IL +  RT ELIE+VR 
Sbjct: 121 DVFSRNSHIRTRQKEKKTRRRRTSSKGAIWKVNLIINTEELLQILSEDGRTNELIESVRA 180

[Close]

BLAST of Carg24185 vs. TAIR10
Match: AT5G37840.1 (BEST Arabidopsis thaliana protein match is: plastid movement impaired 2 (TAIR:AT1G66480.1))

HSP 1 Score: 45.4 bits (106), Expect = 5.5e-05
Identity = 40/174 (22.99%), Postives = 72/174 (41.38%), Query Frame = 0


Query: 44  MGNCVLKVAGERGDVVKVVTVDGGIMELYAPITAECITGEYPGHAIFKSRS-----IFSE 103
           MGN ++     R + VKV+ +DG I  L  P+TA   T EYPG  +  S +     + ++
Sbjct: 1   MGNTIM----VRRNKVKVMKIDGDIFRLKTPVTASDATKEYPGFVLLDSETVKRLGVRAK 60

Query: 104 PLLHKDELHAGQVYYLLPLNPYKPSAKIEADAPSVVSTPYRMSTCESQNAVAKKR----- 163
           PL     L     Y+L+ L P     K+          PYR     + +  AK+R     
Sbjct: 61  PLEPNQILKPNHTYFLVDLPPVDKRNKL----------PYRRVMSGNIHVGAKERLEMLM 120

Query: 164 --------AAEGEAEVFPKYSSTGVWKVKLVICPEQLSEILKQGNRTEELIENV 200
                        ++V       G  +V+L +   Q+++++++ +   E+   +
Sbjct: 121 LSRRTVSDVGAARSDVVGDGPELGHTRVRLRLPRSQITKLMEESHDASEVAAKI 160

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BLAST of Carg24185 vs. TAIR10
Match: AT2G01340.1 (Encodes a protein whose expression is responsive to nematode infection.)

HSP 1 Score: 43.5 bits (101), Expect = 2.1e-04
Identity = 33/152 (21.71%), Postives = 67/152 (44.08%), Query Frame = 0


Query: 60  KVVTVDGGIMELYAPITAECITGEYPGHAIFKSRSI-----FSEPLLHKDELHAGQVYYL 119
           KV+ +DG   +L  P+TAE +  ++PGH +  S S+      ++PL  K  L A ++Y++
Sbjct: 12  KVMKIDGETFKLKTPVTAEEVLKDFPGHVLLDSESVKHYGARAKPLEAKQRLEAKRLYFV 71

Query: 120 LPLNPYKPSAKIEADAPSVVSTPYRMSTCESQNAVAKKRAAEGEAEVF-------PKYSS 179
           +          ++   P  V +   +S  E   ++   R +  +  +             
Sbjct: 72  V--------EPVKECPPRRVRSGIHVSAKERLESLMLARRSSSDLSILKPXXXXXXXXXE 131

Query: 180 TGVWKVKLVICPEQLSEILKQGNRTEELIENV 200
             V +VK+ I   +L +++K+G    E  + +
Sbjct: 132 GAVRRVKVRIPKAELEKLVKEGATEAEATQKI 155

[Close]

BLAST of Carg24185 vs. TrEMBL
Match: tr|A0A1S4DSH2|A0A1S4DSH2_CUCME (uncharacterized protein LOC107990386 OS=Cucumis melo OX=3656 GN=LOC107990386 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.5e-60
Identity = 131/200 (65.50%), Postives = 148/200 (74.00%), Query Frame = 0


Query: 44  MGNCVLKVAGERG------DVVKVVTVDGGIMELYAPITAECITGEYPGHAIFKSRSIFS 103
           MGNC+LK AG  G       +VKVVTV GGIMELY PITAECITGEYPGHAIFKSRSIFS
Sbjct: 1   MGNCILKGAGAGGREAEVNKMVKVVTVGGGIMELYTPITAECITGEYPGHAIFKSRSIFS 60

Query: 104 EPLLHKDELHAGQVYYLLPLNPYKPSAKIEADAPSVVSTPYRMSTCESQNAVAKKRAAEG 163
           E L HK+EL  GQVYYLLPLN Y P+        SV+STPYRMST ESQ         + 
Sbjct: 61  EALHHKEELEGGQVYYLLPLNQYMPNHN-----HSVLSTPYRMSTAESQ--------TKP 120

Query: 164 EAEVFPKYSSTGVWKVKLVICPEQLSEILKQGNRTEELIENVRTVAKCGNGVGSAASSDH 223
           +  +FPKY++ GVWKV LVICP+QLS+IL Q NRT+ELI+NVRTVAKCGN + SA++SDH
Sbjct: 121 DHVLFPKYNNAGVWKVNLVICPQQLSQILSQHNRTQELIDNVRTVAKCGNALESASNSDH 180

Query: 224 SSVAGSWKGSAMDKLQYGLK 238
           SSVAGSWK    DK  YG K
Sbjct: 181 SSVAGSWK----DKPHYGFK 183

[Close]

BLAST of Carg24185 vs. TrEMBL
Match: tr|A0A0A0L3K9|A0A0A0L3K9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G116850 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 9.5e-60
Identity = 129/200 (64.50%), Postives = 148/200 (74.00%), Query Frame = 0


Query: 44  MGNCVLKVAG------ERGDVVKVVTVDGGIMELYAPITAECITGEYPGHAIFKSRSIFS 103
           MGNC+LK AG      E   +VKVVTV GGIMELY PITAECITGEYPGHAIFK+RSIFS
Sbjct: 1   MGNCMLKGAGAGAREEEVNKIVKVVTVGGGIMELYTPITAECITGEYPGHAIFKTRSIFS 60

Query: 104 EPLLHKDELHAGQVYYLLPLNPYKPSAKIEADAPSVVSTPYRMSTCESQNAVAKKRAAEG 163
           + L HK+EL  GQVYYLLPLN Y P+        SV+STPYRMST ESQ         + 
Sbjct: 61  DALHHKEELEGGQVYYLLPLNQYIPNHN-----HSVLSTPYRMSTAESQ--------TKP 120

Query: 164 EAEVFPKYSSTGVWKVKLVICPEQLSEILKQGNRTEELIENVRTVAKCGNGVGSAASSDH 223
           +  +FPKY++ GVWKV LVICP+QLS+IL Q NRT+ELI+NVRTVAKCGN + SA++SDH
Sbjct: 121 DHVMFPKYNNAGVWKVNLVICPQQLSQILSQNNRTQELIDNVRTVAKCGNALESASNSDH 180

Query: 224 SSVAGSWKGSAMDKLQYGLK 238
           SSVAGSWK    DK  YG K
Sbjct: 181 SSVAGSWK----DKPHYGFK 183

[Close]

BLAST of Carg24185 vs. TrEMBL
Match: tr|A0A2N9I3N5|A0A2N9I3N5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS46515 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.9e-55
Identity = 116/195 (59.49%), Postives = 147/195 (75.38%), Query Frame = 0


Query: 44  MGNCVLKVAGERGDVVKVVTVDGGIMELYAPITAECITGEYPGHAIFKSRSIFSEPLLHK 103
           MGNCV K  G   + VKVVT +GGIMELYAPITAECIT E+PGH IF SR +F++PLLH 
Sbjct: 1   MGNCVFKGFGGMEERVKVVTSNGGIMELYAPITAECITNEFPGHGIFLSRDLFAQPLLHN 60

Query: 104 DELHAGQVYYLLPLNPYKPSAKIE----------ADAPSVVSTPYRMSTCESQNAVAKKR 163
           +ELH GQ+YYLLPLNPYKP++  +          + + ++V+TPYRMS C++Q  + +  
Sbjct: 61  EELHVGQLYYLLPLNPYKPNSTTKQSDTAINSNMSSSSAIVATPYRMS-CDNQGIMKR-- 120

Query: 164 AAEGEAEVFPKYSSTGVWKVKLVICPEQLSEILKQGNRTEELIENVRTVAKCGNGVGSAA 223
               + EV P+Y+++GVWKVKLVI PEQLSEIL Q +RTE LIE+VRTVAKCGNG+ SAA
Sbjct: 121 --FSDPEVVPRYNNSGVWKVKLVISPEQLSEILSQESRTEALIESVRTVAKCGNGIPSAA 180

Query: 224 SSDHSSVAGSWKGSA 229
           +SD  SV+ SWKGS+
Sbjct: 181 NSDQWSVSSSWKGSS 190

[Close]

BLAST of Carg24185 vs. TrEMBL
Match: tr|A0A2I4ETN5|A0A2I4ETN5_9ROSI (uncharacterized protein LOC108992617 OS=Juglans regia OX=51240 GN=LOC108992617 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 4.1e-55
Identity = 118/207 (57.00%), Postives = 144/207 (69.57%), Query Frame = 0


Query: 44  MGNCVLKVAGERGDVVKVVTVDGGIMELYAPITAECITGEYPGHAIFKSRSIFSEPLLHK 103
           MGNCV K  G   ++VKVVT +GGIMELYAPITAECIT E+PGHAIF+SRS+F+ PLLH 
Sbjct: 1   MGNCVFKGFGGMEEMVKVVTSNGGIMELYAPITAECITNEFPGHAIFRSRSLFAPPLLHN 60

Query: 104 DELHAGQVYYLLPLNPYKPSA------------------------KIEADAPSVVSTPYR 163
           +ELH+G++YYLLPLNPYKP+                                +V++TPYR
Sbjct: 61  EELHSGKLYYLLPLNPYKPNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVLATPYR 120

Query: 164 MSTCESQNAVAKKRAAEGEAEVFPKYSSTGVWKVKLVICPEQLSEILKQGNRTEELIENV 223
           MS+C++Q  + +      E EV P+Y+STGVWKVKLVI PEQLSEIL Q  RTE LIE+V
Sbjct: 121 MSSCDNQGIMKR----FSEPEVVPRYNSTGVWKVKLVISPEQLSEILSQDARTEALIESV 180

Query: 224 RTVAKCGNGVGSAASSDHSSVAGSWKG 227
           RTVAKCGNGV SA +SD  S++ SWKG
Sbjct: 181 RTVAKCGNGVPSATNSDQWSLSSSWKG 203

[Close]

BLAST of Carg24185 vs. TrEMBL
Match: tr|M5XDU0|M5XDU0_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G196900 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.0e-53
Identity = 120/190 (63.16%), Postives = 140/190 (73.68%), Query Frame = 0


Query: 44  MGNCVLKVAGERGDVVKVVTVDGGIMELYAPITAECITGEYPGHAIFKSRSIFSEPLLHK 103
           MGNCV K  GE  ++VKVVT  GGIMELYAPITA  IT E+PGHAIFKSR +F++PLLH 
Sbjct: 1   MGNCVFKGFGEAEEMVKVVTSSGGIMELYAPITANAITTEFPGHAIFKSRDLFAQPLLHN 60

Query: 104 DELHAGQVYYLLPLNPYKPSAK----IEADAPSVVSTPYRMSTCESQNAVAKKRAAEGEA 163
           +ELH  ++YYLLPLNPYK + K    I  +    VSTPYRMS C+SQ  + K+     + 
Sbjct: 61  EELHPKELYYLLPLNPYKSTPKDHENINVNPNGAVSTPYRMS-CDSQGLLRKR----ADP 120

Query: 164 EVFPKYSSTGVWKVKLVICPEQLSEILKQGNRTEELIENVRTVAKCG-NGVGSAASSDHS 223
           EVFP+Y+S+GVWKVKLVI PEQLSEIL Q  RTE LIE+VRTVAKCG  G  SAA SD  
Sbjct: 121 EVFPRYNSSGVWKVKLVISPEQLSEILSQEARTEALIESVRTVAKCGTGGNSSAAGSDQW 180

Query: 224 SVAGSWKGSA 229
           SV+ SWK SA
Sbjct: 181 SVSSSWKESA 185

The following BLAST results are available for this feature:

BLAST of Carg24185 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022962561.1	6.4e-108	99.01	uncharacterized protein LOC111462928 [Cucurbita moschata]	[more]
XP_022975258.1	5.9e-106	98.02	uncharacterized protein LOC111474379 [Cucurbita maxima]	[more]
XP_023540170.1	7.8e-106	98.02	uncharacterized protein LOC111800623 [Cucurbita pepo subsp. pepo]	[more]
XP_022974256.1	3.0e-105	97.52	uncharacterized protein LOC111472889 [Cucurbita maxima]	[more]
XP_022144608.1	1.4e-67	72.36	uncharacterized protein LOC111014247 [Momordica charantia]	[more]

BLAST of Carg24185 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G61920.1	2.5e-34	46.23	unknown protein	[more]
AT1G64700.1	1.9e-21	33.16	unknown protein	[more]
AT5G37840.1	5.5e-05	22.99	BEST Arabidopsis thaliana protein match is: plastid movement impaired 2 (TAIR:AT...	[more]
AT2G01340.1	2.1e-04	21.71	Encodes a protein whose expression is responsive to nematode infection.	[more]

BLAST of Carg24185 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg24185 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DSH2\|A0A1S4DSH2_CUCME	1.5e-60	65.50	uncharacterized protein LOC107990386 OS=Cucumis melo OX=3656 GN=LOC107990386 PE=...	[more]
tr\|A0A0A0L3K9\|A0A0A0L3K9_CUCSA	9.5e-60	64.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G116850 PE=4 SV=1	[more]
tr\|A0A2N9I3N5\|A0A2N9I3N5_FAGSY	1.9e-55	59.49	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS46515 PE=4 SV=1	[more]
tr\|A0A2I4ETN5\|A0A2I4ETN5_9ROSI	4.1e-55	57.00	uncharacterized protein LOC108992617 OS=Juglans regia OX=51240 GN=LOC108992617 P...	[more]
tr\|M5XDU0\|M5XDU0_PRUPE	1.0e-53	63.16	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G196900 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025322	DUF4228_plant

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24185-RA	Carg24185-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 229..237
None	No IPR available	PANTHER	PTHR33148	FAMILY NOT NAMED	coord: 44..232
None	No IPR available	PANTHER	PTHR33148:SF9	SUBFAMILY NOT NAMED	coord: 44..232
IPR025322	Protein of unknown function DUF4228, plant	PFAM	PF14009	DUF4228	coord: 44..213 e-value: 3.8E-25 score: 89.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24185	Cla021083	Watermelon (97103) v1	carwmB0094
Carg24185	Csa3G116850	Cucumber (Chinese Long) v2	carcuB0105
Carg24185	MELO3C005951	Melon (DHL92) v3.5.1	carmeB0099
Carg24185	CSPI03G07190	Wild cucumber (PI 183967)	carcpiB0110
Carg24185	Cucsa.259920	Cucumber (Gy14) v1	carcgyB0117
Carg24185	CmaCh06G009480	Cucurbita maxima (Rimu)	carcmaB0128
Carg24185	CmoCh06G009710	Cucurbita moschata (Rifu)	carcmoB0137
Carg24185	Lsi05G022180	Bottle gourd (USVL1VR-Ls)	carlsiB088
Carg24185	Cp4.1LG08g00320	Cucurbita pepo (Zucchini)	carcpeB0145
Carg24185	CsGy3G007330	Cucumber (Gy14) v2	carcgybB0105
Carg24185	MELO3C005951.2	Melon (DHL92) v3.6.1	carmedB0101
Carg24185	CsaV3_3G007320	Cucumber (Chinese Long) v3	carcucB0114
Carg24185	Bhi01G000444	Wax gourd	carwgoB0111

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24185	Watermelon (Charleston Gray)	carwcgB0096
Carg24185	Watermelon (97103) v2	carwmbB0098