Carg24053 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24053
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Low-density receptor-like protein
Location	Cucurbita_argyrosperma_scaffold_166 : 259399 .. 264995 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTATCTCCAACACTCTCTCCTGTTCCTTCTTCTTCCTCTCTCTCTCTAGATCTCTACCCTTCTTCCAACCACATGGCTGCCTGCTTTTCTCCCTCGCTGTCCCTGTCTGGTAAATTTTTTCTTCTCTCTTTATCATAGTAGTTCGGTGATTTGTTTCCGCATGCATATTCACATGATTGTGTGTTTGTGTTGAGTGATTGAGTAGATCGAAATTTTTTTCCTAGTAATTATCGCCTGTTAGGTTGCATTGAAAAGCTCTGGAAACGGATGGTTTTTATGAAGCAAAATATTTCGTATTCAATCTCTTTGGAAACTTTGTTACGCATGCCCCCCGGTGATGACTTTTGCATTTAAATTAAAACGTTGAGTTCGATAACGGTTGCTGTGTAGACGTTTCGTAGTTTCGAGGTGGTTTGTTGAATGTTTGATTGTTGGTTTTTTATCGCTCGAGAAAATTGTGGTCTTTTCGGATTTGTTGTGTGAATTTCTGGACGAAAATTGGAGGTGGTTATCTCGATTGGTTTATGAAATTCGATCGTTTCAAATTTTAGCTCTTTGCTTAGCTCGTTTCTGTTCACAGAGTAATCAGTTGTATTTGGGCTTAGTTCTTTTTATCGTTTTTTCCTTCTGTGGTTAGGGGGATTGATCAAGGCCTCAGATCTCTCCTCTAAGTCCATTTCCTTTGGGCATGCACCAAAACTCTCAGTTCAGAAGTGCTTCAAAACCAACCACAAGTTATCAGTACGTGCTGAGTACAAGTACGTTATGTTGCTTTATGCAATGAACGAAATTATTAACATCATTTTGTTTAAATGCTTTTCTCTTATTGAAGTCTCACGTCGGATATATTTTATCATGAATTATAACTGAGGTAGATATGAAAGGAGTTGTTCTTATAATGTTGTACTTCTATTGTTACATGATTCTGAACTTGGTTAAGATATAGCTGACTTTTTGGAGCGATTTTATTTACTAAAAATTTAAGCTAGCAAAAGAATAGTATTATACAGTTGCAATACTAATCATGTATCCTTATCAGGAAAGGGGGTGCTGGGTGAGTATAGGATTGAGCGGGCAGGGAATATATAATATAGGAAAGGAAGGAAGATTCTGAAAACTTAAGTGAAAGAGAAAGTAGTATACTGAATAATCAAAAAAATCTAAATAAGTTTTATAGCAGAGATTTTCGTGGGTGGATTCATTGCTTGAGGACTTTTACTCTAATGCATTCATGGTAGTTTGTTATAAGTCATACCTATCCATAGTTCTAATGAGAATACAGTTTTCAAATTGAACTCTACTGCGTACCTTGAGGGATCCATCTCTAGTGAAGCATGCCTCATTTATTTCTGAGGCAAGAGCCACCTTTCTTTTCCATAGATACTCCAGCACAAGACCACCCATTTGCTTACTTTAAAGAAATTATGTTGCAGTTCTTATTAAAAATAAATAAATAAATAAAGAAATAAAGAAAGAAAAGAAATTATGTTGCAGTTGAAAATATAAACTCCTTCCTCCTTTCCCTTACCAGCGGCCCAAATTAGATGGTTGAAAAAGAGAAGTAAATTGGAAAGATTTTCTTTTTTATCCCCATCTACAAATCCTTTGTTTCAAACATGCACTATTTTATTATGTTTTAGGGAGAAAACTGTACTTTCCATTAAGAGATAGAAGGAGCAATATGGAAAGAACACAAGGCACCTTGAGATGTTAAAGGAGATTTCCAGAATCTACTCTGCATTTGAGATATTCCACTACATATATAGATGTACTTTATGTTTTCAATTGTCTAATACACATAGAAATAATGGTTCATTTTATTCATTTTTGCTCCTTGTAGTAGTTCTTCCCTCCGGATACTTGAAAGTTCAAGCTTTGGATGTTGTTTGACCTGGTTGCTCTTGCTACTAGTTTCTTAGTGTTTCACATGAATAGCAAAACTCTACTGATGAGAATAGCATCAAATTAAGAACCTAACAAGACATCCTCAAGCCATAAAGAAAATAATTTCATGAAATATCTCGATGTATATTGCGAGTTAACAAAGAGAGAAACGAGAATGGTAGTCCACTCCCAATATTTCAGGATTAACTGGAATGCCTATGGGTTAGCTTATATATATTGACTTTGACATCTCTCTTGGATTGGTATTCTGGGGAAAAAATGGTTAACACGTCCACTTTACTTTGTCATTCTAACAATACCAAACTTCTTTGTAAATCATTATTGTTTCTTTCCTATAGTTCTACTAGATTTTTGGACAGACAAATTCCATTCTTAAAATCTTAATTTGGTTACTTAGATGAAGATGCGTTTACTGACCCATTTGAAATATTATAAAAGCAGCACATTTCTATTTACTCCAGGAATGAATTTCCAATGGTTTCTTTATTTTTTTTCCATAAGGACAGTTGGACTAATAGCTACAAGTTTGTTTTTTTGTTACAGTGATGGTGGTAGAAGTGGAGGTGGGGATTTTGTTGCTGGGTTTCTTCTTGGGGGTGCTGTATTTGGAACATTAGCTTATGTTTTCGCACCGCAGGTGAAGTCAATATTTTGTAGTTTTGTTCTAATATCTTACATATCATCTCTGGCAAATAAGATTTTAACATTGAACATTTGGATTTCATATCACCATTGTTGTTCTGATTCAGCTAGGGTATATTTTAAATATTCACATAAACATGCATCTGTTTAGATGATTTCATGAAGTTAAAAAGAAAATGGATGAGGGGACAAATGCACTTATACTCTATAGTTCTTCTAATCTTTATATTCAAATGCAGAAGGCTTATTTTTTATTTGCCCCACATATGTCATCGTTACATACAAATTTCAGAATGTGTGTCAAGTGGTTTTAATAGTTTGGAAATTCTATTTATTGCCTTTCTGCTTGTATGCACGTAATGCAGATCAGGAGATCTCTTCTAAATGAAAATGAGTATGGTTTTAAGAGGGCAAAGCGTCCAATCTACTACGATGAAGGTTTAGAGGTAATTATAATGATATACTCTTATTGTAGATTATTTTTTTTTTAGTACAATTTGGTTTCCTTTATACAAGTTAAGTTATGGCTTGGAAATCCAATCCTTGAACTCTGATAGTTCTGTCTGTTCTATCTTTAGATTTCCAAAAATTTCAATTAGATCTCTACTTAACTTAGTTCATGGTCTGTAAAAGAGAGTATGACATAGTGTCATTTTATTATGTTCAGTGGCTTGCTTTTTGTTTCTTGATTTCAAATCAGCCTAGGTTTGTTGAATAGGAATAAGCATATCACAGTATCATTTAGATACAGTAGAGACTATAGACTTACCATTCAAAATTTAGGGATATAAAAAATTGAGAAGTGTATCGCCAAGGTGTTGACCAACAGATTGAGAAGGGTGCTTCCTTTGGCAATAGCATATTCTCAGGATGCTTTTATTGCTGGTACACAAATTTTAGGTCTGGCCCTTATTGCGAATGAGATTATTAACTACAGATTTCACAATTAGGAAGGGGTCATCTTCAAGATTGACTTTGAAGAGGCATATAGGTTAGAATTTCTTGTATGAAGTCATAGCCAAGAAGGTTTCTAGGTATAAATAGAAATCTTGGATTTGGAGTTGTGTTAGATCGGTTAAGTACTCAATCCTTACGAATGGGAGACTGAAGGGTAGGATTTGTGCTTCAAGAGGGTTTCAGCAGGAATCCTCTTTTGCCCTTTCATTTTCTCGTGGTGGATGTTTTGAGTAGGATCTTTTTGCGAGGGGTTGAGTATAATGCTATCGATGGTTTTAACGTCGGGAAGGATAAGTTGCCCCTCTCTCATCTCTAGTATGCTGATGATACTACCTTTTTTGGCTCAGGTAATGAAGAGTCGTTCTTCAATCTGAATAAGTTTTTAGCTTTCTTTGAACCCATTTATGGTTGAAGATTAATAGAGGTAAGTGTCAATGGTTGGGTTTGAATTGTGAGCCGCGGAAGATGAGTAGGTGGGCTGCCTTGGTTGGATGTGAAGTTGGTTCGTTTCCTTCCTCTTACCTTCGTCCCCCACTTGGGCATAATCCTAGACCTATCCGGTTCTGTGACCTTGTTGTGGGTAAGGTTCATAGGAGGCTTTCATCTTCGAATATGAGTTCCTTCTTGGAAGGTACTAGACTAACTCTAATTCAATTTGTCTCGAGGAAATTCCAATTTATTTCTTTTCTCTTTTTAGGGTCCTTGTGCATGTGACTGAGGGTCTCGAGAAGCATATAAGGGATTTCCTTTTGAGTGGACCTTGTATGGAGGTTGAGGCACATATAGAAACCCCTGGAAAGACATTGCTGAGGAGTACACCTTTTTCTGCTTTGTTCATTGTTCTGTGGGGATGGAAGAGAGTTTTTGGGTCGGAAGATAAGTGGTTCGGAGATAGATCCCACTGCTTTGTGTTTCCTCATCTTTATCATCTATTTATGATGAATAATCATTTGATAGCCGATTTTCTATCACATCCTAGGTATTTTCCCTCGCCTTTGTTGGGCTTCCAGCATCCTTTGTCCAATATGGGGGAAACGTTGGACATTGTCGACCTCCTTTCTTTGTTGGGGGAATTCTGTTGTTTTTGAGGAGGGATGCTTGTTGTTGGAGCCCTAACCCGACCGGAGGTTTTTCGTGTAGGTCCTTTTTTTTTTGCATGGTTAATCCCTCTTCCTCCTCTCCTTTGGGGATTTTGTTTTTGCGTCATTGTGGAAGGTGAAAATCTCAAAGAAGGTTAAGTATTTTGCTTGGTATGTTATTCACGGTAGAGTTAATACCTTAGATAGGGTGGTGAGGAAGTTTCCTACCTTGGTGGGACATTCCTTATAAGAGATTTTTTTTTTTTTTTCTTACATTTTCATTGATGAGTGAAATTTACAAGAGGGATGTATAATCCATGATGTTTACAAAAGACCTTCCCAATTTGCAACGAGGGAGGTATAACTATAGGACAAAGTAAGACCTATAGTTATTTGATGAGTGAAATTGTACTTTGTTTGATTAGAGGCCTTTCATGTAGGTTGCCTCCTTTTGTGGGCTCTCTTTTTGTATGCTCTTGTATTCTTTCATTTTTTCTTAATAAAAGCTCGGTTTCTTATTAAAAAGATAAGGAACATAACTGATTTTGGAACTTATCAATGTTTAATATCTTAACAAACCCTAATTTTTCTGAGAAGCAGAAAACCAGAGAGACGTTGAATGCAAAAATAGGCCAATTGAATTCTGCCATTGACAATGTATCTTCACGTCTGAGAGGTGGCAAGAACACTCCAGCTGTGCCAGTTGAAGCTGATCCTGAGGTTGAAGCTACCTTTTAAATTCTGCTTAAACATGGACTGCTCAAGGTTTGAAGTTTGTACATCTTAGACACCATTTCATCTCATGTGACAATTTGCCTCATTTCAAAGTTTTTTGGATTTGATCAAGATGAGAATTGGATATTGCAGCTTCATTGTTGGAATGATCTTTAAGGTTATTACCACTTTTAGAACTTTTTAAATCACCACTGAATTCCAATGTAGTTTTTGTTGTCCATATTAATATAAGAACATAGTCTAAATAGCCAAATTTTGGCATACATCTTGAAAAATGG

mRNA sequence

ATTATCTCCAACACTCTCTCCTGTTCCTTCTTCTTCCTCTCTCTCTCTAGATCTCTACCCTTCTTCCAACCACATGGCTGCCTGCTTTTCTCCCTCGCTGTCCCTGTCTGGGGGATTGATCAAGGCCTCAGATCTCTCCTCTAAGTCCATTTCCTTTGGGCATGCACCAAAACTCTCAGTTCAGAAGTGCTTCAAAACCAACCACAAGTTATCAGTACGTGCTGAGTACAATGATGGTGGTAGAAGTGGAGGTGGGGATTTTGTTGCTGGGTTTCTTCTTGGGGGTGCTGTATTTGGAACATTAGCTTATGTTTTCGCACCGCAGATCAGGAGATCTCTTCTAAATGAAAATGAGTATGGTTTTAAGAGGGCAAAGCGTCCAATCTACTACGATGAAGGTTTAGAGAAAACCAGAGAGACGTTGAATGCAAAAATAGGCCAATTGAATTCTGCCATTGACAATGTATCTTCACGTCTGAGAGGTGGCAAGAACACTCCAGCTGTGCCAGTTGAAGCTGATCCTGAGGTTGAAGCTACCTTTTAAATTCTGCTTAAACATGGACTGCTCAAGGTTTGAAGTTTGTACATCTTAGACACCATTTCATCTCATGTGACAATTTGCCTCATTTCAAAGTTTTTTGGATTTGATCAAGATGAGAATTGGATATTGCAGCTTCATTGTTGGAATGATCTTTAAGGTTATTACCACTTTTAGAACTTTTTAAATCACCACTGAATTCCAATGTAGTTTTTGTTGTCCATATTAATATAAGAACATAGTCTAAATAGCCAAATTTTGGCATACATCTTGAAAAATGG

Coding sequence (CDS)

ATGGCTGCCTGCTTTTCTCCCTCGCTGTCCCTGTCTGGGGGATTGATCAAGGCCTCAGATCTCTCCTCTAAGTCCATTTCCTTTGGGCATGCACCAAAACTCTCAGTTCAGAAGTGCTTCAAAACCAACCACAAGTTATCAGTACGTGCTGAGTACAATGATGGTGGTAGAAGTGGAGGTGGGGATTTTGTTGCTGGGTTTCTTCTTGGGGGTGCTGTATTTGGAACATTAGCTTATGTTTTCGCACCGCAGATCAGGAGATCTCTTCTAAATGAAAATGAGTATGGTTTTAAGAGGGCAAAGCGTCCAATCTACTACGATGAAGGTTTAGAGAAAACCAGAGAGACGTTGAATGCAAAAATAGGCCAATTGAATTCTGCCATTGACAATGTATCTTCACGTCTGAGAGGTGGCAAGAACACTCCAGCTGTGCCAGTTGAAGCTGATCCTGAGGTTGAAGCTACCTTTTAA

Protein sequence

MAACFSPSLSLSGGLIKASDLSSKSISFGHAPKLSVQKCFKTNHKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAYVFAPQIRRSLLNENEYGFKRAKRPIYYDEGLEKTRETLNAKIGQLNSAIDNVSSRLRGGKNTPAVPVEADPEVEATF

Homology

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BLAST of Carg24053 vs. NCBI nr
Match: XP_022948116.1 (uncharacterized protein LOC111451792 [Cucurbita moschata])

HSP 1 Score: 307.4 bits (786), Expect = 2.8e-80
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MAACFSPSLSLSGGLIKASDLSSKSISFGHAPKLSVQKCFKTNHKLSVRAEYNDGGRSGG 60
           MAACFSPSLSLSGGLIKASDLSSKSISFGHAPKLSVQKCFKTNHKLSVRAEYNDGGRSGG
Sbjct: 1   MAACFSPSLSLSGGLIKASDLSSKSISFGHAPKLSVQKCFKTNHKLSVRAEYNDGGRSGG 60

Query: 61  GDFVAGFLLGGAVFGTLAYVFAPQIRRSLLNENEYGFKRAKRPIYYDEGLEKTRETLNAK 120
           GDFVAGFLLGGAVFGTLAYVFAPQIRRSLLNENEYGFKRAKRPIYYDEGLEKTRETLNAK
Sbjct: 61  GDFVAGFLLGGAVFGTLAYVFAPQIRRSLLNENEYGFKRAKRPIYYDEGLEKTRETLNAK 120

Query: 121 IGQLNSAIDNVSSRLRGGKNTPAVPVEADPEVEATF 157
           IGQLNSAIDNVSSRLRGGKNTPAVPVEADPEVEATF
Sbjct: 121 IGQLNSAIDNVSSRLRGGKNTPAVPVEADPEVEATF 156

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BLAST of Carg24053 vs. NCBI nr
Match: XP_023534610.1 (uncharacterized protein LOC111796133 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 303.9 bits (777), Expect = 3.1e-79
Identity = 154/156 (98.72%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 1   MAACFSPSLSLSGGLIKASDLSSKSISFGHAPKLSVQKCFKTNHKLSVRAEYNDGGRSGG 60
           MAACF+PSLSLSGGLIKASDLSSKSISFGHAPKLSVQKCFKTNHKLSVRAEYNDGGRSGG
Sbjct: 1   MAACFAPSLSLSGGLIKASDLSSKSISFGHAPKLSVQKCFKTNHKLSVRAEYNDGGRSGG 60

Query: 61  GDFVAGFLLGGAVFGTLAYVFAPQIRRSLLNENEYGFKRAKRPIYYDEGLEKTRETLNAK 120
           GDFVAGFLLGGAVFGTLAYVFAPQIRRSLLNENEYGFKRAKRPIYYDEGLEKTRETLNAK
Sbjct: 61  GDFVAGFLLGGAVFGTLAYVFAPQIRRSLLNENEYGFKRAKRPIYYDEGLEKTRETLNAK 120

Query: 121 IGQLNSAIDNVSSRLRGGKNTPAVPVEADPEVEATF 157
           IGQLNSAIDNVSSRLRGGKNTP VPVEADPEVEATF
Sbjct: 121 IGQLNSAIDNVSSRLRGGKNTPNVPVEADPEVEATF 156

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BLAST of Carg24053 vs. NCBI nr
Match: XP_023007535.1 (uncharacterized protein LOC111499995 [Cucurbita maxima])

HSP 1 Score: 301.6 bits (771), Expect = 1.5e-78
Identity = 154/156 (98.72%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 1   MAACFSPSLSLSGGLIKASDLSSKSISFGHAPKLSVQKCFKTNHKLSVRAEYNDGGRSGG 60
           MAA FSPSLS+SGGLIKASDLSSKSISFGHAPKLSVQKCFKTNHKLSVRAEYNDGGRSGG
Sbjct: 1   MAARFSPSLSVSGGLIKASDLSSKSISFGHAPKLSVQKCFKTNHKLSVRAEYNDGGRSGG 60

Query: 61  GDFVAGFLLGGAVFGTLAYVFAPQIRRSLLNENEYGFKRAKRPIYYDEGLEKTRETLNAK 120
           GDFVAGFLLGGAVFGTLAYVFAPQIRRSLLNENEYGFKRAKRPIYYDEGLEKTRETLNAK
Sbjct: 61  GDFVAGFLLGGAVFGTLAYVFAPQIRRSLLNENEYGFKRAKRPIYYDEGLEKTRETLNAK 120

Query: 121 IGQLNSAIDNVSSRLRGGKNTPAVPVEADPEVEATF 157
           IGQLNSAIDNVSSRLRGGKNTPAVPVEADPEVEATF
Sbjct: 121 IGQLNSAIDNVSSRLRGGKNTPAVPVEADPEVEATF 156

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BLAST of Carg24053 vs. NCBI nr
Match: XP_023512433.1 (uncharacterized protein LOC111777191 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 271.6 bits (693), Expect = 1.7e-69
Identity = 135/156 (86.54%), Postives = 149/156 (95.51%), Query Frame = 0


Query: 1   MAACFSPSLSLSGGLIKASDLSSKSISFGHAPKLSVQ-KCFKTNHKLSVRAEYNDGGRSG 60
           MAACF+PSLS+SGGLIKASDLSSKSISFG  PKL++Q KC +TNHKLSVRAEYNDGGRSG
Sbjct: 1   MAACFAPSLSVSGGLIKASDLSSKSISFGQTPKLAIQRKCSRTNHKLSVRAEYNDGGRSG 60

Query: 61  GGDFVAGFLLGGAVFGTLAYVFAPQIRRSLLNENEYGFKRAKRPIYYDEGLEKTRETLNA 120
           GG+FVAGFLLGGAVFGTLAY+FAPQIRRS+LNE+EYGF+RA+RPIYYD+GLEKTR+TLN 
Sbjct: 61  GGEFVAGFLLGGAVFGTLAYIFAPQIRRSILNEDEYGFRRARRPIYYDDGLEKTRQTLNE 120

Query: 121 KIGQLNSAIDNVSSRLRGGKNTPAVPVEADPEVEAT 156
           KIGQLNSAIDNVSSRLRGG  TPAVPVEADPE+EAT
Sbjct: 121 KIGQLNSAIDNVSSRLRGGNKTPAVPVEADPEIEAT 156

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BLAST of Carg24053 vs. NCBI nr
Match: XP_022944447.1 (uncharacterized protein LOC111448897 [Cucurbita moschata])

HSP 1 Score: 270.0 bits (689), Expect = 5.0e-69
Identity = 134/156 (85.90%), Postives = 150/156 (96.15%), Query Frame = 0


Query: 1   MAACFSPSLSLSGGLIKASDLSSKSISFGHAPKLSVQ-KCFKTNHKLSVRAEYNDGGRSG 60
           MAACF+PSLS+SGGLIKASDLSSKSISFG APKL++Q KC +T+HKLSVRAEYNDGGR+G
Sbjct: 1   MAACFAPSLSVSGGLIKASDLSSKSISFGQAPKLAIQRKCSRTSHKLSVRAEYNDGGRNG 60

Query: 61  GGDFVAGFLLGGAVFGTLAYVFAPQIRRSLLNENEYGFKRAKRPIYYDEGLEKTRETLNA 120
           GG+FVAGFLLGGAVFGTLAY+FAPQIRRS+LNE+EYGF+RA+RPIYYD+GLEKTR+TLN 
Sbjct: 61  GGEFVAGFLLGGAVFGTLAYIFAPQIRRSILNEDEYGFRRARRPIYYDDGLEKTRQTLNE 120

Query: 121 KIGQLNSAIDNVSSRLRGGKNTPAVPVEADPEVEAT 156
           KIGQLNSAIDNVSSRLRGG  TPAVPVEADPE+EAT
Sbjct: 121 KIGQLNSAIDNVSSRLRGGNKTPAVPVEADPEIEAT 156

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BLAST of Carg24053 vs. TAIR10
Match: AT5G16660.1 (unknown protein)

HSP 1 Score: 170.2 bits (430), Expect = 9.8e-43
Identity = 105/167 (62.87%), Postives = 122/167 (73.05%), Query Frame = 0


Query: 1   MAACFSPS-LSLSG----GLIKASDLS--SKSISFGHAPKLSVQKCFKTNHKLSVRAEYN 60
           MA+C + + LSLSG      +KA+ LS  +K  S      L++ K      K SV A Y 
Sbjct: 1   MASCIATAPLSLSGVSQSHYVKANGLSTTTKLSSICKTSDLTIHKKSNRTRKFSVSAGYR 60

Query: 61  DGGRSG-GGDFVAGFLLGGAVFGTLAYVFAPQIRRSLLN-ENEYGFKRAKRPIYYDEGLE 120
           DG RSG  GDF+AGFLLGGAVFG +AY+FAPQIRRS+LN E+EYGF++ K+P YYDEGLE
Sbjct: 61  DGSRSGSSGDFIAGFLLGGAVFGAVAYIFAPQIRRSVLNEEDEYGFEKPKQPTYYDEGLE 120

Query: 121 KTRETLNAKIGQLNSAIDNVSSRLRG-GKNTPA--VPVEADPEVEAT 156
           KTRETLN KIGQLNSAIDNVSSRLRG  KNT +  VPVE DPEVEAT
Sbjct: 121 KTRETLNEKIGQLNSAIDNVSSRLRGREKNTSSLNVPVETDPEVEAT 167

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BLAST of Carg24053 vs. TAIR10
Match: AT3G02900.1 (unknown protein)

HSP 1 Score: 161.0 bits (406), Expect = 5.9e-40
Identity = 87/130 (66.92%), Postives = 100/130 (76.92%), Query Frame = 0


Query: 34  LSVQKCFKTNHKLSVRAEYNDGGRSGG-GDFVAGFLLGGAVFGTLAYVFAPQIRRSLLNE 93
           L+VQ     +HKLSV A Y  G + GG  DFV GFLLG AVFGTLAY+FAPQIRRS+L+E
Sbjct: 32  LTVQTKSNRSHKLSVSAGYRGGSKGGGSSDFVTGFLLGSAVFGTLAYIFAPQIRRSVLSE 91

Query: 94  NEYGFKRAKRPIYYDEGLEKTRETLNAKIGQLNSAIDNVSSRLRGG-----KNT--PAVP 153
           NEYGFK+ ++P+YYDEGLE+ RE LN KIGQLNSAID VSSRL+GG     KNT  P+VP
Sbjct: 92  NEYGFKKPEQPMYYDEGLEERREILNEKIGQLNSAIDKVSSRLKGGRSGSSKNTSSPSVP 151

Query: 154 VEADPEVEAT 156
           VE D E EAT
Sbjct: 152 VETDAEAEAT 161

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BLAST of Carg24053 vs. TAIR10
Match: AT1G42960.1 (expressed protein localized to the inner membrane of the chloroplast.)

HSP 1 Score: 77.4 bits (189), Expect = 8.6e-15
Identity = 64/169 (37.87%), Postives = 88/169 (52.07%), Query Frame = 0


Query: 1   MAACFSPSLSL---------SGGLIKASDLSSKSISFG--HAPKLSVQKCFKTNHKLSVR 60
           MA+  S SLSL         S G     +    S+SFG  H+ KL +    +T   L+++
Sbjct: 1   MASLSSTSLSLPKNSHQLHPSSGFSLNPNARCVSVSFGLNHSNKLHI-SAPRTKRILTIQ 60

Query: 61  AEYNDGGRSGG-GDFVAGFLLGGAVFGTLAYVFAPQIRRSLLNENEYGFKRAKRPIYYDE 120
           + Y D   SG  G FV GF+L     G L  V+APQI +++   +     R      YDE
Sbjct: 61  SAYRDDDGSGSTGLFVGGFILXXXXVGALGCVYAPQISKAIAGADRKDLMRKLPKFIYDE 120

Query: 121 --GLEKTRETLNAKIGQLNSAIDNVSSRLRGGKNTPAVPVEADPEVEAT 156
              LEKTR+ L  KI QLNSAID+VSS+L+  ++TP     +  E+EAT
Sbjct: 121 EKALEKTRKVLAEKIAQLNSAIDDVSSQLK-SEDTPNGAALSTDEIEAT 167

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BLAST of Carg24053 vs. TrEMBL
Match: tr|A0A1S3C9M4|A0A1S3C9M4_CUCME (uncharacterized protein LOC103498395 OS=Cucumis melo OX=3656 GN=LOC103498395 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 3.7e-68
Identity = 135/157 (85.99%), Postives = 150/157 (95.54%), Query Frame = 0


Query: 1   MAACFSPSLSLSGGLIKASDLSSKSISFGHAPKLSV-QKCFKTNHKLSVRAEYNDGGRSG 60
           MAACF+PSLS+SGGLIKASDLSSKS+SFG  PKL++ +KC KTNHKLSVRAEYNDGGRSG
Sbjct: 1   MAACFAPSLSVSGGLIKASDLSSKSVSFGQTPKLAIRRKCSKTNHKLSVRAEYNDGGRSG 60

Query: 61  GGDFVAGFLLGGAVFGTLAYVFAPQIRRSLLNENEYGFKRAKRPIYYDEGLEKTRETLNA 120
           GGDFVAGFLLGGAVFGTLAY+FAPQIRRS+LNE+E+GF+RAKRP+YYDEGLEKTR+TLNA
Sbjct: 61  GGDFVAGFLLGGAVFGTLAYLFAPQIRRSILNEDEHGFRRAKRPMYYDEGLEKTRQTLNA 120

Query: 121 KIGQLNSAIDNVSSRLRGGKNTPAVPV-EADPEVEAT 156
           KI QLNSAIDNVSSRLRGG NTPAVPV EA+PE+EAT
Sbjct: 121 KISQLNSAIDNVSSRLRGGNNTPAVPVEEAEPEIEAT 157

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BLAST of Carg24053 vs. TrEMBL
Match: tr|A0A0A0LNE4|A0A0A0LNE4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G445770 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 5.0e-57
Identity = 122/153 (79.74%), Postives = 134/153 (87.58%), Query Frame = 0


Query: 1   MAACFSPSLSLSGGLIKASDLSSKSISFGHAPKLSV-QKCFKTNHKLSVRAEYNDGGR-- 60
           MAAC +PSLS+SGGLIKASDLSSKSISFG  PKL++ +KC KTNHKLSV AEYNDGGR  
Sbjct: 1   MAACLAPSLSVSGGLIKASDLSSKSISFGQIPKLAIRRKCSKTNHKLSVLAEYNDGGRSG 60

Query: 61  SGGGDFVAGFLLGGAVFGTLAYVFAPQIRRSLLNENEYGFKRAKRPIYYDE---GLEKTR 120
           SGGGDFVAGF LGGAVFGTLA+VFAPQ+RR LLNENE+GF+RAKRP+YYDE   GLE TR
Sbjct: 61  SGGGDFVAGFFLGGAVFGTLAFVFAPQMRRFLLNENEHGFRRAKRPVYYDEGQDGLEATR 120

Query: 121 ETLNAKIGQLNSAIDNVSSRLRGGKNTPAVPVE 148
           ETLNAKI QL SAIDNVSSRL+GGK  P +PVE
Sbjct: 121 ETLNAKIKQLGSAIDNVSSRLKGGKKKPPLPVE 153

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BLAST of Carg24053 vs. TrEMBL
Match: tr|A0A0A0LNY8|A0A0A0LNY8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G233000 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.1e-56
Identity = 121/153 (79.08%), Postives = 134/153 (87.58%), Query Frame = 0


Query: 1   MAACFSPSLSLSGGLIKASDLSSKSISFGHAPKLSV-QKCFKTNHKLSVRAEYNDGGR-- 60
           MAACF+PSLS+SGGLIK SDLSSKSISFG   KL++ +KC KTNHKLSVRA+Y+DGGR  
Sbjct: 1   MAACFAPSLSVSGGLIKPSDLSSKSISFGQTSKLAIRRKCSKTNHKLSVRADYDDGGRSG 60

Query: 61  SGGGDFVAGFLLGGAVFGTLAYVFAPQIRRSLLNENEYGFKRAKRPIYYDE---GLEKTR 120
           SGGGDFVAGF LGGAVFGTL+YVFAPQIRR LLNENE+GF+RAKRP+YYDE   GLE TR
Sbjct: 61  SGGGDFVAGFFLGGAVFGTLSYVFAPQIRRFLLNENEHGFRRAKRPVYYDEGQDGLEATR 120

Query: 121 ETLNAKIGQLNSAIDNVSSRLRGGKNTPAVPVE 148
           ETLNAKI QL SAIDNVSSRL+GGK  P +PVE
Sbjct: 121 ETLNAKIKQLGSAIDNVSSRLKGGKKKPPLPVE 153

[Close]

BLAST of Carg24053 vs. TrEMBL
Match: tr|A0A061EYQ8|A0A061EYQ8_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_025556 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 3.3e-53
Identity = 116/158 (73.42%), Postives = 134/158 (84.81%), Query Frame = 0


Query: 1   MAACFSPSLSLSGGL-IKASDL-SSKSISFGHAPKLSV-QKCFKTNHKLSVRAEYNDGGR 60
           MA+CF+P +S+SGG  +KA ++  +KS +FG  P L+V +K   +N + SV AEY DG R
Sbjct: 1   MASCFAP-VSISGGSHLKAREVWFTKSSTFGKTPSLAVRRKPMPSNRQFSVCAEYRDGSR 60

Query: 61  SGGGDFVAGFLLGGAVFGTLAYVFAPQIRRSLLNENEYGFKRAKRPIYYDEGLEKTRETL 120
            GGGDFVAGFLLGGAVFGTLAY+FAPQIRRSLLNE+EYGF+RAKRPIYYDEGLEKTR+TL
Sbjct: 61  GGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLEKTRQTL 120

Query: 121 NAKIGQLNSAIDNVSSRLRGGKNTPAVPVEADPEVEAT 156
           NAKI QLNSAIDNVSSRLRGG N+P VPVE DPEVEAT
Sbjct: 121 NAKISQLNSAIDNVSSRLRGGNNSPTVPVETDPEVEAT 157

[Close]

BLAST of Carg24053 vs. TrEMBL
Match: tr|A0A067L4W1|A0A067L4W1_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_02565 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 5.7e-53
Identity = 118/160 (73.75%), Postives = 132/160 (82.50%), Query Frame = 0


Query: 1   MAACFSPSLSLSGGL-IKASDL-SSKSISFGHAPKLSVQKCFK---TNHKLSVRAEYNDG 60
           MA  F+P +S+SGG  +K  +L SSKS S G  PKL+  +       N KLSVRAEY+DG
Sbjct: 1   MATSFAP-VSISGGSHLKTHELCSSKSYSLGKIPKLAALRKSNQAGMNRKLSVRAEYHDG 60

Query: 61  GRSGGGDFVAGFLLGGAVFGTLAYVFAPQIRRSLLNENEYGFKRAKRPIYYDEGLEKTRE 120
            R GGGDFVAGFLLGGA+FGTLAYVFAPQIR+SLLNE+EYGF+RAKRPIYYDEGLEKTR+
Sbjct: 61  SRGGGGDFVAGFLLGGAIFGTLAYVFAPQIRKSLLNEDEYGFRRAKRPIYYDEGLEKTRQ 120

Query: 121 TLNAKIGQLNSAIDNVSSRLRGGKNTPAVPVEADPEVEAT 156
           TLNAKI QLNSAIDNVSSRLRGG N+P VPVE DPEVEAT
Sbjct: 121 TLNAKISQLNSAIDNVSSRLRGGNNSPTVPVETDPEVEAT 159

The following BLAST results are available for this feature:

BLAST of Carg24053 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948116.1	2.8e-80	100.00	uncharacterized protein LOC111451792 [Cucurbita moschata]	[more]
XP_023534610.1	3.1e-79	98.72	uncharacterized protein LOC111796133 [Cucurbita pepo subsp. pepo]	[more]
XP_023007535.1	1.5e-78	98.72	uncharacterized protein LOC111499995 [Cucurbita maxima]	[more]
XP_023512433.1	1.7e-69	86.54	uncharacterized protein LOC111777191 [Cucurbita pepo subsp. pepo]	[more]
XP_022944447.1	5.0e-69	85.90	uncharacterized protein LOC111448897 [Cucurbita moschata]	[more]

BLAST of Carg24053 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G16660.1	9.8e-43	62.87	unknown protein	[more]
AT3G02900.1	5.9e-40	66.92	unknown protein	[more]
AT1G42960.1	8.6e-15	37.87	expressed protein localized to the inner membrane of the chloroplast.	[more]

BLAST of Carg24053 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg24053 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C9M4\|A0A1S3C9M4_CUCME	3.7e-68	85.99	uncharacterized protein LOC103498395 OS=Cucumis melo OX=3656 GN=LOC103498395 PE=...	[more]
tr\|A0A0A0LNE4\|A0A0A0LNE4_CUCSA	5.0e-57	79.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G445770 PE=4 SV=1	[more]
tr\|A0A0A0LNY8\|A0A0A0LNY8_CUCSA	1.1e-56	79.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G233000 PE=4 SV=1	[more]
tr\|A0A061EYQ8\|A0A061EYQ8_THECC	3.3e-53	73.42	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_025556 PE=4 SV=1	[more]
tr\|A0A067L4W1\|A0A067L4W1_JATCU	5.7e-53	73.75	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_02565 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24053-RA	Carg24053-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..156
None	No IPR available	PANTHER	PTHR34048:SF3	SUBFAMILY NOT NAMED	coord: 1..155
None	No IPR available	PANTHER	PTHR34048	FAMILY NOT NAMED	coord: 1..155

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24053	Cla010245	Watermelon (97103) v1	carwmB1053
Carg24053	Csa2G233000	Cucumber (Chinese Long) v2	carcuB1068
Carg24053	Csa2G445770	Cucumber (Chinese Long) v2	carcuB1067
Carg24053	MELO3C021897	Melon (DHL92) v3.5.1	carmeB1022
Carg24053	ClCG09G017260	Watermelon (Charleston Gray)	carwcgB1025
Carg24053	CSPI02G27970	Wild cucumber (PI 183967)	carcpiB1089
Carg24053	CSPI02G11540	Wild cucumber (PI 183967)	carcpiB1090
Carg24053	CmaCh20G008980	Cucurbita maxima (Rimu)	carcmaB1459
Carg24053	CmaCh02G004480	Cucurbita maxima (Rimu)	carcmaB1460
Carg24053	CmoCh20G009060	Cucurbita moschata (Rifu)	carcmoB1414
Carg24053	CmoCh02G004570	Cucurbita moschata (Rifu)	carcmoB1415
Carg24053	Lsi10G002870	Bottle gourd (USVL1VR-Ls)	carlsiB961
Carg24053	Cp4.1LG16g02000	Cucurbita pepo (Zucchini)	carcpeB1468
Carg24053	Cp4.1LG05g12150	Cucurbita pepo (Zucchini)	carcpeB1469
Carg24053	CsGy2G011550	Cucumber (Gy14) v2	carcgybB1037
Carg24053	MELO3C021897.2	Melon (DHL92) v3.6.1	carmedB1035
Carg24053	CsaV3_2G014040	Cucumber (Chinese Long) v3	carcucB1101
Carg24053	CsaV3_2G036670	Cucumber (Chinese Long) v3	carcucB1100
Carg24053	Cla97C09G178780	Watermelon (97103) v2	carwmbB1112
Carg24053	Bhi10G001745	Wax gourd	carwgoB1240

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg24053	Carg23610	Silver-seed gourd	carcarB620

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24053	Wax gourd	carwgoB1239