Carg23968 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23968
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Far upstream element-binding protein like
Location	Cucurbita_argyrosperma_scaffold_253 : 195594 .. 199113 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAAGAAAACCCATCCTCTTTATCACCTCTCGTTTTCTCTTTCTAGGGTTTTCTCTCTGAAGCTAAACAATGGCTGACGAAGCGCAGTATTCATCTGGTACTGATGTTGCGTCCAATAAGCGCAAGTACGATGACCATCCTCCACCTATGGTTTCCCGCCGGCCGACTGGTTTTTCCGGCCCCATCACTTCCCCCTCCTCCGATACGGCCAATCCTCCGCCTCCCTCCTACAACAACGTCCCGCCCCCTATGGATGAGATCCAGCTTGCTAAGCAGCGTGCTCAGGAAATTGCCTCTCGGTTGATTATCTCCAGTGGTGGCGTCGGGGCCGGCGCTGGACCTGGCGTTGGGGCTGATGCCAAGCGCCCAAGGGTTGAGAATGGCGGCGGGTTTGATTCATACGAAAAGGGTTTTAGTTCTGGCTCAGGTGACTATAATCTTGCTGTCTCTTTCTTGCATCTTTCATGTTTCTGTATGCATGTCGAACATGTATTGCCTTGTTTTTAAATTTTTTTTATTATAGTGAAGTAGTTTGCACTTTTTATTGCATTTTTGTGGCACATCCCTGTGAGCTATATTTTAAATCTCAGTATTCACGGGGACATGGGTGATTAAACGTTTCAGGATGTCAGTATTAGTGGTATAGAGAAAGCTTTCTGTCAGTTCTATGGATGCCTATAAATGTCATATAGTTGATTTATTTTCCACCGTCTTTTACCCATGTTTCGATCAGAATTGTTGCTGAATGCTTTTATTTATCTATTTTTTTAAATGTATTTTAAAAATAAGTATCGTTTGCATGATTGGATGCCTATTTGTGACATTCATCTGCGTGGATGCAGACTTAAAGTCTCACTTGTCTAATTCAGCTCCTTCAGCAACACCTGTTTCCTATGGGTTTCAAGGGACAAGCAAGAAAATCGACATTCCAAATGGTAGAGTGGGTGTAATTATTGGTAAAGGTGGTGAGACCATCAAGTACCTTCAGCTCCAGTCTGGGGCAAAAATACAAGTTACTCGTGACATGGATGCAGATCCCAATTCTGCTACCCGGACGGTTGATCTAATGGGTACTCCTGATCAAATTGCTAAGGCCGAGCAGTTGATTAATGATGTTCTTTCCGAGGTTTGTTTTAGTTTTCAAACTGCATGTGTACTCTTGATCAAATTGCTTTGTCAACTACTGTGTGTTGTCTCACCTCTTAAAAACATTGACATGCCGTGTAGCAATGGATTTGTTTGGAAAGGCCTTACCAATTTTTCCACTGCCAACATAATATTATTGGCAATATTTTCTTTATAAATTGCATACAAAATCTGATTGAATTGACGTTGTTGGAAGGGTTAGGCATTTAACTTGGCTTGATAATGTGCTTGTCTAATAAATTTAACATTTGATTCAGGCTGAATCTGGAGGTTCTGGCATAGTATCTCAAAGATTGACTGGTTCATCGGGATCTGAGCAGTTTGTTATGAAAATTCCCAATAATAAGGTTCTTTAAATATTTTTTTGGAATTTACCAAGTTCTGTCATCTACTTTGAGAACATTTAAATCTTTTTTTTAATTTATTTATTGGTGATACTTATGATTGTTATGATTTTAATTTTCTAGGTTGGCTTGGTTATTGGTAAAGGTGGTGAAACAATCAAAAGTATGCAAGCCAGGACTGGAGCTCGTATTCAGGTTTGTTTACATATATGTATATACATTTTTCATGTGTCTTGGAAGTCCTCCCCTTTCCTACCATTTTCTTTAATTTCAATTTTGCAACTTGTTTTCACTTTTTGTTTACGTAACATTAATTATTGTATTTAATTTGGATAACATGGGATTTTGTATTCTTCATTTTCACAGGTGATACCTTTGCACTTACCCCCTGGGGATACATCTACAGAAAGAACCTTACAGATTGATGGTTCAAGCGAACAGATTGAGTCAGCAAAACAGTTGGTTAATGAAGTTACCAGTGAGGTGCGTTTGCAGATTTTGGTTCCATTAAGATTGTTATGCCCTTTTGTAGTAGGAACTAATGCATAGTTGAAATCTAATTCCATGAATTTTTTGTGTGAATTTTTTATTTTTGAGGTGTTTGTAATGATTTTTCCTGATTGTACTTGGTTATTTTTGTAATTGTTGATGCAAGGTTGCCATACTATTCTAGAACTCCTTTAGCTCTTTCTATGAATTCTTTTAGTATTTAGTGTTATACCTCAACACCAAGGTGAGCATTAAGGACTCAGTGTTGATGGACGTTGAATTGTTTCATTGCTTTTACATGTTTATTCAGCTTCTTACTGTGATATAGCTGGGATTTGGTATTCATTTACTTCATATAGATTACACTGTTTTGTGAAGATTATGAAATGTTCTGTTTTCTGATTGTGTTCCTTATTATAAATTGAAATGTTTTCTTTTTAAGACACATTCTTGTTACAGTCACGTTTTTTATTTGTTATAATTTTGTACACTAATCATTCTTCAATACAATGCTTCTGTTTTTCTTTCTGGAAGGAAATAGTTGATACTTCTCTCATTGTCTCTATGTTGTCTTGTTGGATAGCTGGAGTCAACAAGAATTTGGTTTCTTCGTCGTTCATTGAAAATACTTCTTTTCCCTTCTAAAGTTTACCCTGCTTAATGAACTGGAGCTTCTATGAAATTTGTCAAACACTGTTATATACTCAGCATTTGGATATGTTGTTCATTTGACTATAATGAATATGTTTCTGTGTTGCAAATCTGAAAAATCATTTTATTGCCGATGCTGTTAGTATGCCCGAGCAGTTTTACTATTTTAATTGTCTTAAACAGTAACTATTGAAGAGCCGTAAGGAGGTTTGTTCCCTCACTATGCTTACTTTCAACTTTGGGGTGAGCTCTGTTTGGATTGTATGTCGACCGTATCAATGCTGGTTTGTAGTTACACTCAAGGAATTAGAAGCATTGGAATATACAAACCTGTTATTACTTTTGGATCTCTTATAGCTTGAGATAGCTTTTAGGTCTTTTATCCATAATCGATCTGGATTTCTTATTATGTCTGCAATTGTTTATTCTACATATCCATTGATGCAGATATGGAGGATCTAAGGTTCCTGGGGTTTGGAAATAGGTGAAGTTATTTTTACAGATGGAACACCTAGTTAGTTTTTGAAGAGTGACTGGTACTTGAAGGGTTCCCATTGGTGATATGTTTGCTCCGTTGGATATTCAGTTTATCTGTCAATATTACTCTTATTAGGTTGTTAAGGTTATATGATCTCTCTCCTATTTAAGATGTCTGCAGCCGGTTCGGTATTATTCTTGGTTTTATATCTTGATTGTGGTATCTGAAAGGTTCCCATTGGTGATATGCTGGCTCCTTTGGATATTCAGTTTATCAGTCAATATTACTCTTATTAGGTTGTTAAGGTTACATGATATCTCTCCTATTTAAGATGTCTGCAACCCATTTGGTATTATTCTTGGTTTTATATCCTGATTGTGGTATCCGTAAGGTTCCCATTGGTGATATGCT

mRNA sequence

AAGAAGAAAACCCATCCTCTTTATCACCTCTCGTTTTCTCTTTCTAGGGTTTTCTCTCTGAAGCTAAACAATGGCTGACGAAGCGCAGTATTCATCTGGTACTGATGTTGCGTCCAATAAGCGCAAGTACGATGACCATCCTCCACCTATGGTTTCCCGCCGGCCGACTGGTTTTTCCGGCCCCATCACTTCCCCCTCCTCCGATACGGCCAATCCTCCGCCTCCCTCCTACAACAACGTCCCGCCCCCTATGGATGAGATCCAGCTTGCTAAGCAGCGTGCTCAGGAAATTGCCTCTCGGTTGATTATCTCCAGTGGTGGCGTCGGGGCCGGCGCTGGACCTGGCGTTGGGGCTGATGCCAAGCGCCCAAGGGTTGAGAATGGCGGCGGGTTTGATTCATACGAAAAGGGTTTTAGTTCTGGCTCAGACTTAAAGTCTCACTTGTCTAATTCAGCTCCTTCAGCAACACCTGTTTCCTATGGGTTTCAAGGGACAAGCAAGAAAATCGACATTCCAAATGGTAGAGTGGGTGTAATTATTGGTAAAGGTGGTGAGACCATCAAGTACCTTCAGCTCCAGTCTGGGGCAAAAATACAAGTTACTCGTGACATGGATGCAGATCCCAATTCTGCTACCCGGACGGTTGATCTAATGGGTACTCCTGATCAAATTGCTAAGGCCGAGCAGTTGATTAATGATGTTCTTTCCGAGGCTGAATCTGGAGGTTCTGGCATAGTATCTCAAAGATTGACTGGTTCATCGGGATCTGAGCAGTTTGTTATGAAAATTCCCAATAATAAGGTTGGCTTGGTTATTGGTAAAGGTGGTGAAACAATCAAAAGTATGCAAGCCAGGACTGGAGCTCGTATTCAGGTGATACCTTTGCACTTACCCCCTGGGGATACATCTACAGAAAGAACCTTACAGATTGATGGTTCAAGCGAACAGATTGAGTCAGCAAAACAGTTGGTTAATGAAGTTACCAGTGAGGTGCGTTTGCAGATTTTGGTTCCATTAAGATTGTTATGCCCTTTTGTAGTAGGAACTAATGCATAGTTGAAATCTAATTCCATGAATTTTTTGTGTGAATTTTTTATTTTTGAGGTGTTTGTAATGATTTTTCCTGATTGTACTTGGTTATTTTTGTAATTGTTGATGCAAGGTTGCCATACTATTCTAGAACTCCTTTAGCTCTTTCTATGAATTCTTTTAGTATTTAGTGTTATACCTCAACACCAAGGTGAGCATTAAGGACTCAGTGTTGATGGACGTTGAATTGTTTCATTGCTTTTACATGTTTATTCAGCTTCTTACTGTGATATAGCTGGGATTTGGTATTCATTTACTTCATATAGATTACACTGTTTTGTGAAGATTATGAAATGTTCTGTTTTCTGATTGTGTTCCTTATTATAAATTGAAATGTTTTCTTTTTAAGACACATTCTTGTTACAGTCACGTTTTTTATTTGTTATAATTTTGTACACTAATCATTCTTCAATACAATGCTTCTGTTTTTCTTTCTGGAAGGAAATAGTTGATACTTCTCTCATTGTCTCTATGTTGTCTTGTTGGATAGCTGGAGTCAACAAGAATTTGGTTTCTTCGTCGTTCATTGAAAATACTTCTTTTCCCTTCTAAAGTTTACCCTGCTTAATGAACTGGAGCTTCTATGAAATTTGTCAAACACTGTTATATACTCAGCATTTGGATATGTTGTTCATTTGACTATAATGAATATGTTTCTGTGTTGCAAATCTGAAAAATCATTTTATTGCCGATGCTGTTAGTATGCCCGAGCAGTTTTACTATTTTAATTGTCTTAAACAGTAACTATTGAAGAGCCGTAAGGAGGTTTGTTCCCTCACTATGCTTACTTTCAACTTTGGGGTGAGCTCTGTTTGGATTGTATGTCGACCGTATCAATGCTGGTTTGTAGTTACACTCAAGGAATTAGAAGCATTGGAATATACAAACCTGTTATTACTTTTGGATCTCTTATAGCTTGAGATAGCTTTTAGGTCTTTTATCCATAATCGATCTGGATTTCTTATTATGTCTGCAATTGTTTATTCTACATATCCATTGATGCAGATATGGAGGATCTAAGGTTCCTGGGGTTTGGAAATAGGTGAAGTTATTTTTACAGATGGAACACCTAGTTAGTTTTTGAAGAGTGACTGGTACTTGAAGGGTTCCCATTGGTGATATGTTTGCTCCGTTGGATATTCAGTTTATCTGTCAATATTACTCTTATTAGGTTGTTAAGGTTATATGATCTCTCTCCTATTTAAGATGTCTGCAGCCGGTTCGGTATTATTCTTGGTTTTATATCTTGATTGTGGTATCTGAAAGGTTCCCATTGGTGATATGCTGGCTCCTTTGGATATTCAGTTTATCAGTCAATATTACTCTTATTAGGTTGTTAAGGTTACATGATATCTCTCCTATTTAAGATGTCTGCAACCCATTTGGTATTATTCTTGGTTTTATATCCTGATTGTGGTATCCGTAAGGTTCCCATTGGTGATATGCT

Coding sequence (CDS)

ATGGCTGACGAAGCGCAGTATTCATCTGGTACTGATGTTGCGTCCAATAAGCGCAAGTACGATGACCATCCTCCACCTATGGTTTCCCGCCGGCCGACTGGTTTTTCCGGCCCCATCACTTCCCCCTCCTCCGATACGGCCAATCCTCCGCCTCCCTCCTACAACAACGTCCCGCCCCCTATGGATGAGATCCAGCTTGCTAAGCAGCGTGCTCAGGAAATTGCCTCTCGGTTGATTATCTCCAGTGGTGGCGTCGGGGCCGGCGCTGGACCTGGCGTTGGGGCTGATGCCAAGCGCCCAAGGGTTGAGAATGGCGGCGGGTTTGATTCATACGAAAAGGGTTTTAGTTCTGGCTCAGACTTAAAGTCTCACTTGTCTAATTCAGCTCCTTCAGCAACACCTGTTTCCTATGGGTTTCAAGGGACAAGCAAGAAAATCGACATTCCAAATGGTAGAGTGGGTGTAATTATTGGTAAAGGTGGTGAGACCATCAAGTACCTTCAGCTCCAGTCTGGGGCAAAAATACAAGTTACTCGTGACATGGATGCAGATCCCAATTCTGCTACCCGGACGGTTGATCTAATGGGTACTCCTGATCAAATTGCTAAGGCCGAGCAGTTGATTAATGATGTTCTTTCCGAGGCTGAATCTGGAGGTTCTGGCATAGTATCTCAAAGATTGACTGGTTCATCGGGATCTGAGCAGTTTGTTATGAAAATTCCCAATAATAAGGTTGGCTTGGTTATTGGTAAAGGTGGTGAAACAATCAAAAGTATGCAAGCCAGGACTGGAGCTCGTATTCAGGTGATACCTTTGCACTTACCCCCTGGGGATACATCTACAGAAAGAACCTTACAGATTGATGGTTCAAGCGAACAGATTGAGTCAGCAAAACAGTTGGTTAATGAAGTTACCAGTGAGGTGCGTTTGCAGATTTTGGTTCCATTAAGATTGTTATGCCCTTTTGTAGTAGGAACTAATGCATAG

Protein sequence

MADEAQYSSGTDVASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDTANPPPPSYNNVPPPMDEIQLAKQRAQEIASRLIISSGGVGAGAGPGVGADAKRPRVENGGGFDSYEKGFSSGSDLKSHLSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKIPNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQLVNEVTSEVRLQILVPLRLLCPFVVGTNA

Homology

[Close]

BLAST of Carg23968 vs. NCBI nr
Match: XP_022951946.1 (far upstream element-binding protein 1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 533.9 bits (1374), Expect = 3.9e-148
Identity = 307/311 (98.71%), Postives = 310/311 (99.68%), Query Frame = 0


Query: 1   MADEAQYSSGTDVASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDTANXXXXXXXXXXXX 60
           MADEAQYSSGTDVASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDTANXXXXXXXXXXXX
Sbjct: 1   MADEAQYSSGTDVASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDTANXXXXXXXXXXXX 60

Query: 61  MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENGGGFDSYEKGFSSGSD 120
           MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENGGGFDSYEKGFSSGSD
Sbjct: 61  MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENGGGFDSYEKGFSSGSD 120

Query: 121 LKSHLSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD 180
           LKSH+SNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD
Sbjct: 121 LKSHMSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD 180

Query: 181 MDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKI 240
           MDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKI
Sbjct: 181 MDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKI 240

Query: 241 PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL 300
           PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL
Sbjct: 241 PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL 300

Query: 301 VNEVTSEVRLQ 312
           VNEVTSE R++
Sbjct: 301 VNEVTSENRVR 311

[Close]

BLAST of Carg23968 vs. NCBI nr
Match: XP_022951945.1 (far upstream element-binding protein 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 533.9 bits (1374), Expect = 3.9e-148
Identity = 307/311 (98.71%), Postives = 310/311 (99.68%), Query Frame = 0


Query: 1   MADEAQYSSGTDVASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDTANXXXXXXXXXXXX 60
           MADEAQYSSGTDVASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDTANXXXXXXXXXXXX
Sbjct: 1   MADEAQYSSGTDVASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDTANXXXXXXXXXXXX 60

Query: 61  MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENGGGFDSYEKGFSSGSD 120
           MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENGGGFDSYEKGFSSGSD
Sbjct: 61  MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENGGGFDSYEKGFSSGSD 120

Query: 121 LKSHLSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD 180
           LKSH+SNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD
Sbjct: 121 LKSHMSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD 180

Query: 181 MDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKI 240
           MDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKI
Sbjct: 181 MDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKI 240

Query: 241 PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL 300
           PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL
Sbjct: 241 PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL 300

Query: 301 VNEVTSEVRLQ 312
           VNEVTSE R++
Sbjct: 301 VNEVTSENRVR 311

[Close]

BLAST of Carg23968 vs. NCBI nr
Match: XP_023002827.1 (far upstream element-binding protein 1-like [Cucurbita maxima])

HSP 1 Score: 530.8 bits (1366), Expect = 3.3e-147
Identity = 304/311 (97.75%), Postives = 308/311 (99.04%), Query Frame = 0


Query: 1   MADEAQYSSGTDVASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDTANXXXXXXXXXXXX 60
           MADEAQYSSGTD ASNKRKYDDHPPPMVSRRPTGFSGPITSPSSD+ANXXXXXXXXXXX 
Sbjct: 1   MADEAQYSSGTDAASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDSANXXXXXXXXXXXP 60

Query: 61  MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENGGGFDSYEKGFSSGSD 120
           MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENGGGFDSYEKGFSSGSD
Sbjct: 61  MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENGGGFDSYEKGFSSGSD 120

Query: 121 LKSHLSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD 180
           LKSH+SNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD
Sbjct: 121 LKSHMSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD 180

Query: 181 MDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKI 240
           MDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKI
Sbjct: 181 MDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKI 240

Query: 241 PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL 300
           PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL
Sbjct: 241 PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL 300

Query: 301 VNEVTSEVRLQ 312
           VNEVTSE R++
Sbjct: 301 VNEVTSENRVR 311

[Close]

BLAST of Carg23968 vs. NCBI nr
Match: XP_023536823.1 (far upstream element-binding protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 520.8 bits (1340), Expect = 3.4e-144
Identity = 301/311 (96.78%), Postives = 304/311 (97.75%), Query Frame = 0


Query: 1   MADEAQYSSGTDVASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDTANXXXXXXXXXXXX 60
           MADEAQYSSGTD ASNKRKYDDHPPPMVSRRPTGFSGPITSPS     XXXXXXXXXXXX
Sbjct: 1   MADEAQYSSGTDAASNKRKYDDHPPPMVSRRPTGFSGPITSPSXXXXXXXXXXXXXXXXX 60

Query: 61  MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENGGGFDSYEKGFSSGSD 120
           MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENGGGFDSYEKGFSSGSD
Sbjct: 61  MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENGGGFDSYEKGFSSGSD 120

Query: 121 LKSHLSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD 180
           LKSH+SNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD
Sbjct: 121 LKSHMSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD 180

Query: 181 MDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKI 240
           MDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKI
Sbjct: 181 MDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKI 240

Query: 241 PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL 300
           PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL
Sbjct: 241 PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL 300

Query: 301 VNEVTSEVRLQ 312
           VNEVTSE R++
Sbjct: 301 VNEVTSENRVR 311

[Close]

BLAST of Carg23968 vs. NCBI nr
Match: XP_022997505.1 (far upstream element-binding protein 1 [Cucurbita maxima])

HSP 1 Score: 497.7 bits (1280), Expect = 3.1e-137
Identity = 270/311 (86.82%), Postives = 285/311 (91.64%), Query Frame = 0


Query: 1   MADEAQYSSGTDVASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDTANXXXXXXXXXXXX 60
           MADEAQYSSGTD+ SNKRKY+D PPPMV+RRPTGFSGPITSPSSD A+            
Sbjct: 1   MADEAQYSSGTDITSNKRKYEDQPPPMVTRRPTGFSGPITSPSSDLAHPPPPSYNNVPPP 60

Query: 61  MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENGGGFDSYEKGFSSGSD 120
           MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXX    RPRVENG GFDSY+KGFSSG+D
Sbjct: 61  MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXADVKRPRVENGSGFDSYDKGFSSGAD 120

Query: 121 LKSHLSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD 180
           LK H+S+SAPS+ PVSYGFQGTSKKI+IPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD
Sbjct: 121 LKPHMSSSAPSSIPVSYGFQGTSKKIEIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD 180

Query: 181 MDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKI 240
           MDADPNSATR V+LMGTPDQIAKAEQL+NDVLSEAESGGSGIVS+RLTG SGSEQFVMKI
Sbjct: 181 MDADPNSATRMVELMGTPDQIAKAEQLMNDVLSEAESGGSGIVSRRLTGPSGSEQFVMKI 240

Query: 241 PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL 300
           PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL
Sbjct: 241 PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL 300

Query: 301 VNEVTSEVRLQ 312
           VNEV SE R++
Sbjct: 301 VNEVISENRVR 311

[Close]

BLAST of Carg23968 vs. TAIR10
Match: AT2G25970.1 (KH domain-containing protein)

HSP 1 Score: 341.3 bits (874), Expect = 6.7e-94
Identity = 202/317 (63.72%), Postives = 228/317 (71.92%), Query Frame = 0


Query: 1   MADEAQYSSGTDVASNKRKYDD-HPPPMVSRRPTGF-SGPITSPSSD---TANXXXXXXX 60
           MADE+QYSS  D  SNKRKY++   PP  +RRPTGF SGPI S S D             
Sbjct: 1   MADESQYSS--DTYSNKRKYEEPTAPPPSTRRPTGFSSGPIPSASVDPTAPTGLPPSSYN 60

Query: 61  XXXXXMDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENGGGFD-SYEKG 120
                MDEIQ+AKQ+AQEIA+RL+ S+                RPRV+NG  +D    KG
Sbjct: 61  SVPPPMDEIQIAKQKAQEIAARLLNSADA-------------KRPRVDNGASYDYGDNKG 120

Query: 121 FSSGSDLKSHLSNSAPSATPVSYG-FQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGA 180
           FSS       +S + PS+ PVSYG FQGT+KKIDIPN RVGVIIGKGGETIKYLQLQSGA
Sbjct: 121 FSSYPSEGKQMSGTVPSSIPVSYGSFQGTTKKIDIPNMRVGVIIGKGGETIKYLQLQSGA 180

Query: 181 KIQVTRDMDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLT----G 240
           KIQVTRDMDADPN ATRTVDL GTPDQI+KAEQLI DVL EAE+G +            G
Sbjct: 181 KIQVTRDMDADPNCATRTVDLTGTPDQISKAEQLITDVLQEAEAGNTAXXXXXXXXXXGG 240

Query: 241 SSGSEQFVMKIPNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDG 300
            +G++QFVMKIPNNKVGL+IGKGGETIKSMQA+TGARIQVIPLHLPPGD + ERTLQIDG
Sbjct: 241 QAGADQFVMKIPNNKVGLIIGKGGETIKSMQAKTGARIQVIPLHLPPGDPTPERTLQIDG 300

Query: 301 SSEQIESAKQLVNEVTS 307
            +EQIE AKQLVNE+ S
Sbjct: 301 ITEQIEHAKQLVNEIIS 302

[Close]

BLAST of Carg23968 vs. TAIR10
Match: AT4G10070.1 (KH domain-containing protein)

HSP 1 Score: 163.7 bits (413), Expect = 1.9e-40
Identity = 86/170 (50.59%), Postives = 125/170 (73.53%), Query Frame = 0


Query: 142 TSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSATRTVDLMGTPDQI 201
           T+++ID+P+ +VGV+IGKGGETI+YLQ  SGAKIQ+ RD +ADP+SA R V+++G+   I
Sbjct: 176 TTRRIDVPSSKVGVLIGKGGETIRYLQFNSGAKIQILRDSEADPSSALRPVEIIGSVACI 235

Query: 202 AKAEQLINDVLSEAESGGSGIVSQRLTGSSGS----EQFVMKIPNNKVGLVIGKGGETIK 261
             AE+LI+ V++EAE+GGS  +  R   S+ +    EQ  +K+PN+KVGL+IG+GGETIK
Sbjct: 236 ESAEKLISAVIAEAEAGGSPALVARGHPSTHAIGIPEQIEIKVPNDKVGLIIGRGGETIK 295

Query: 262 SMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQLVNEVTSE 308
           +MQ R+GAR Q+IP H   GD   ERT++I G   QI+ A  ++ +V ++
Sbjct: 296 NMQTRSGARTQLIPQH-AEGDGLKERTVRISGDKMQIDIATDMIKDVMNQ 344

[Close]

BLAST of Carg23968 vs. TAIR10
Match: AT1G33680.1 (KH domain-containing protein)

HSP 1 Score: 158.7 bits (400), Expect = 6.2e-39
Identity = 81/163 (49.69%), Postives = 120/163 (73.62%), Query Frame = 0


Query: 142 TSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSATRTVDLMGTPDQI 201
           T+++ID+P+ +VG +IGKGGE ++YLQ+ SGAKIQ+ RD +ADP+SA R V+++GT   I
Sbjct: 232 TTRRIDVPSSKVGTLIGKGGEMVRYLQVNSGAKIQIRRDAEADPSSALRPVEIIGTVSCI 291

Query: 202 AKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKIPNNKVGLVIGKGGETIKSMQA 261
            KAE+LIN V++E E+GG   ++ R       EQ  +K+P++KVG++IG+GGETIK+MQ 
Sbjct: 292 EKAEKLINAVIAEVEAGGVPALAAR----GVPEQMEIKVPSDKVGVIIGRGGETIKNMQT 351

Query: 262 RTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQLVNEV 305
           ++ ARIQ+IP +   GD S ERT++I G   QI+ A  L+ +V
Sbjct: 352 KSRARIQLIPQN--EGDASKERTVRISGDKRQIDIATALIKDV 388

[Close]

BLAST of Carg23968 vs. TAIR10
Match: AT5G04430.2 (binding to TOMV RNA 1L (long form))

HSP 1 Score: 70.1 bits (170), Expect = 2.9e-12
Identity = 43/126 (34.13%), Postives = 67/126 (53.17%), Query Frame = 0


Query: 148 IPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSATRTVDLMGTPDQIAKAEQL 207
           + N   G +IGKGG TI   Q +SGA+IQ++R+ +  P +  R + + G+  ++    +L
Sbjct: 41  VSNAAAGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGTTDRIIMISGSIKEVVNGLEL 100

Query: 208 INDVL-SEAESGGSGIVSQRLTGSSGSEQFVMKIPNNKVGLVIGKGGETIKSMQARTGAR 267
           I D L SE  +     V  R        +  + +PN+  G +IGKGG TIKS    + A 
Sbjct: 101 ILDKLHSELHAEDGNEVEPR-------RRIRLVVPNSSCGGIIGKGGATIKSFIEESKAG 159

Query: 268 IQVIPL 273
           I++ PL
Sbjct: 161 IKISPL 159

[Close]

BLAST of Carg23968 vs. TAIR10
Match: AT1G14170.3 (RNA-binding KH domain-containing protein)

HSP 1 Score: 53.5 bits (127), Expect = 2.8e-07
Identity = 37/140 (26.43%), Postives = 68/140 (48.57%), Query Frame = 0


Query: 149 PNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSATRTVDLMGTPDQI------- 208
           P  + G IIGKGGE  K ++ ++ + +++    +A P    R V +  T +++       
Sbjct: 51  PVKKTGSIIGKGGEIAKQIRSETKSNMRIN---EALPGCEERVVTMYSTNEELNHFGDDG 110

Query: 209 ------AKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKIPNNKVGLVIGKGGET 268
                   A   ++D++        G       G   +    M +P++++G VIGKGG+ 
Sbjct: 111 ELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVIGKGGQV 170

Query: 269 IKSMQARTGARIQVIPLHLP 276
           I++++  T A+I+VI  HLP
Sbjct: 171 IQNLRNDTNAQIRVIKDHLP 187

[Close]

BLAST of Carg23968 vs. Swiss-Prot
Match: sp|Q8UVD9|FUBP2_CHICK (Far upstream element-binding protein 2 OS=Gallus gallus OX=9031 GN=KHSRP PE=1 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.5e-21
Identity = 59/160 (36.88%), Postives = 97/160 (60.62%), Query Frame = 0


Query: 148 IPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSATRTVDLMGTPDQIAKAEQL 207
           +P+G VG+IIG+GGE I  +Q  SG K+Q++ D    P    R+V L G+P+ + KA+ +
Sbjct: 215 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPE---RSVSLTGSPEAVQKAKLM 274

Query: 208 INDVLSEAESGGSGIVSQRLTGSSGSEQFVMKIPNNKVGLVIGKGGETIKSMQARTGARI 267
           ++D++S    G  G       G +G+ Q +M IP  K GLVIGKGGETIK +Q R G  +
Sbjct: 275 LDDIVSRGRGGPPGQFHDYANGQNGTVQEIM-IPAGKAGLVIGKGGETIKQLQERAG--V 334

Query: 268 QVIPLHLPPGDTSTERTLQIDGSSEQIESAKQLVNEVTSE 308
           ++I +     +T+ ++ L+I G   +++ A ++V ++  E
Sbjct: 335 KMIFIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRE 368

[Close]

BLAST of Carg23968 vs. Swiss-Prot
Match: sp|Q3U0V1|FUBP2_MOUSE (Far upstream element-binding protein 2 OS=Mus musculus OX=10090 GN=Khsrp PE=1 SV=2)

HSP 1 Score: 105.1 bits (261), Expect = 1.5e-21
Identity = 72/241 (29.88%), Postives = 122/241 (50.62%), Query Frame = 0


Query: 67  AKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENGGGFDSYEKGFSSGSDLKSHLS 126
           A QRA++IA+++   +                + ++E+G   DS +K  S G  + S L 
Sbjct: 78  AVQRARQIAAKIGGDAATTVNNNTPDFGFGGQKRQLEDGDQPDS-KKLASQGDSIGSQLG 137

Query: 127 NSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPN 186
              P            +++  +P+G VG+IIG+GGE I  +Q  SG K+Q++ D    P 
Sbjct: 138 PIHPPPR------TSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPE 197

Query: 187 SATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKIPNNKVG 246
              R+V L G P+ + KA+ +++D++S    G  G       G        + IP  K G
Sbjct: 198 ---RSVSLTGAPESVQKAKMMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAG 257

Query: 247 LVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQLVNEVTS 306
           LVIGKGGETIK +Q R G  +++I +     +T+ ++ L+I G   +++ A ++V ++  
Sbjct: 258 LVIGKGGETIKQLQERAG--VKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILR 306

Query: 307 E 308
           E
Sbjct: 318 E 306

[Close]

BLAST of Carg23968 vs. Swiss-Prot
Match: sp|Q99PF5|FUBP2_RAT (Far upstream element-binding protein 2 OS=Rattus norvegicus OX=10116 GN=Khsrp PE=1 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.5e-21
Identity = 72/241 (29.88%), Postives = 122/241 (50.62%), Query Frame = 0


Query: 67  AKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENGGGFDSYEKGFSSGSDLKSHLS 126
           A QRA++IA+++   +                + ++E+G   DS +K  S G  + S L 
Sbjct: 78  AVQRARQIAAKIGGDAATTVNNNTPDFGFGGQKRQLEDGDQPDS-KKLASQGDSIGSQLG 137

Query: 127 NSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPN 186
              P            +++  +P+G VG+IIG+GGE I  +Q  SG K+Q++ D    P 
Sbjct: 138 PIHPPPR------TSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPE 197

Query: 187 SATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKIPNNKVG 246
              R+V L G P+ + KA+ +++D++S    G  G       G        + IP  K G
Sbjct: 198 ---RSVSLTGAPESVQKAKMMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAG 257

Query: 247 LVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQLVNEVTS 306
           LVIGKGGETIK +Q R G  +++I +     +T+ ++ L+I G   +++ A ++V ++  
Sbjct: 258 LVIGKGGETIKQLQERAG--VKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILR 306

Query: 307 E 308
           E
Sbjct: 318 E 306

[Close]

BLAST of Carg23968 vs. Swiss-Prot
Match: sp|Q92945|FUBP2_HUMAN (Far upstream element-binding protein 2 OS=Homo sapiens OX=9606 GN=KHSRP PE=1 SV=4)

HSP 1 Score: 104.4 bits (259), Expect = 2.5e-21
Identity = 71/241 (29.46%), Postives = 122/241 (50.62%), Query Frame = 0


Query: 67  AKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENGGGFDSYEKGFSSGSDLKSHLS 126
           A QRA++IA+++   +                + ++E+G   +S +K  S G  + S L 
Sbjct: 77  AVQRARQIAAKIGGDAATTVNNSTPDFGFGGQKRQLEDGDQPES-KKLASQGDSISSQLG 136

Query: 127 NSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPN 186
              P            +++  +P+G VG+IIG+GGE I  +Q  SG K+Q++ D    P 
Sbjct: 137 PIHPPPR------TSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPE 196

Query: 187 SATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKIPNNKVG 246
              R+V L G P+ + KA+ +++D++S    G  G       G        + IP  K G
Sbjct: 197 ---RSVSLTGAPESVQKAKMMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAG 256

Query: 247 LVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQLVNEVTS 306
           LVIGKGGETIK +Q R G  +++I +     +T+ ++ L+I G   +++ A ++V ++  
Sbjct: 257 LVIGKGGETIKQLQERAG--VKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILR 305

Query: 307 E 308
           E
Sbjct: 317 E 305

[Close]

BLAST of Carg23968 vs. Swiss-Prot
Match: sp|Q96AE4|FUBP1_HUMAN (Far upstream element-binding protein 1 OS=Homo sapiens OX=9606 GN=FUBP1 PE=1 SV=3)

HSP 1 Score: 96.3 bits (238), Expect = 6.8e-19
Identity = 58/162 (35.80%), Postives = 95/162 (58.64%), Query Frame = 0


Query: 143 SKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSATRTVDLMGTPDQIA 202
           +++  +P+G VG IIG+GGE I  +Q +SG KIQ+  D    P    R+  L GTP+ + 
Sbjct: 102 TEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPE---RSCMLTGTPESVQ 161

Query: 203 KAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKIPNNKVGLVIGKGGETIKSMQAR 262
            A++L++ ++   E G          G   + Q +M IP +K GLVIGKGGETIK +Q R
Sbjct: 162 SAKRLLDQIV---EKGRPAPGFHHGDGPGNAVQEIM-IPASKAGLVIGKGGETIKQLQER 221

Query: 263 TGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQLVNEV 305
            G  ++++ +   P +T  ++ L+I G   +++ AK++V E+
Sbjct: 222 AG--VKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLEL 254

[Close]

BLAST of Carg23968 vs. TrEMBL
Match: tr|A0A0A0LKT6|A0A0A0LKT6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351790 PE=4 SV=1)

HSP 1 Score: 482.3 bits (1240), Expect = 8.9e-133
Identity = 268/309 (86.73%), Postives = 277/309 (89.64%), Query Frame = 0


Query: 1   MADEAQYSSGTDVASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDTANXXXXXXXXXXXX 60
           MADEAQYSS TD  SNKRKYDD PPP   RRPTGFSGPITSPSSD+A             
Sbjct: 1   MADEAQYSSATDTPSNKRKYDDQPPP---RRPTGFSGPITSPSSDSA----PSYNNVPPP 60

Query: 61  MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENGGGFDSYEKGFSSGSD 120
           MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXX    RPRVENGGG+DSY+KGFSSG D
Sbjct: 61  MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXADVKRPRVENGGGYDSYDKGFSSGPD 120

Query: 121 LKSHLSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD 180
           LK H+SNSAPSA P+SYGFQG+SKKI+IPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD
Sbjct: 121 LKPHMSNSAPSAIPISYGFQGSSKKIEIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD 180

Query: 181 MDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKI 240
           MDADPNS TR V+LMGTPDQIAKAEQLINDVLSEAESGGSGIVS+RLTG SGSEQFVMKI
Sbjct: 181 MDADPNSTTRMVELMGTPDQIAKAEQLINDVLSEAESGGSGIVSRRLTGPSGSEQFVMKI 240

Query: 241 PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL 300
           PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL
Sbjct: 241 PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL 300

Query: 301 VNEVTSEVR 310
           VNEV SE R
Sbjct: 301 VNEVISENR 302

[Close]

BLAST of Carg23968 vs. TrEMBL
Match: tr|A0A1S3B9Y5|A0A1S3B9Y5_CUCME (far upstream element-binding protein 1 OS=Cucumis melo OX=3656 GN=LOC103487791 PE=4 SV=1)

HSP 1 Score: 480.3 bits (1235), Expect = 3.4e-132
Identity = 267/309 (86.41%), Postives = 276/309 (89.32%), Query Frame = 0


Query: 1   MADEAQYSSGTDVASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDTANXXXXXXXXXXXX 60
           MADEAQYSS  D  SNKRKYDD PPP   RRPTGFSGPITSPSSD+A             
Sbjct: 1   MADEAQYSSANDTPSNKRKYDDQPPP---RRPTGFSGPITSPSSDSA----PSYNNVPPP 60

Query: 61  MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENGGGFDSYEKGFSSGSD 120
           MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXX    RPRVENGGG+DSY+KGFSSG D
Sbjct: 61  MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXADVKRPRVENGGGYDSYDKGFSSGPD 120

Query: 121 LKSHLSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD 180
           LK H+SNSAPSA P+SYGFQG+SKKI+IPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD
Sbjct: 121 LKPHMSNSAPSAIPISYGFQGSSKKIEIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD 180

Query: 181 MDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKI 240
           MDADPNS TR V+LMGTPDQIAKAEQLINDVLSEAESGGSGIVS+RLTG SGSEQFVMKI
Sbjct: 181 MDADPNSTTRMVELMGTPDQIAKAEQLINDVLSEAESGGSGIVSRRLTGPSGSEQFVMKI 240

Query: 241 PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL 300
           PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL
Sbjct: 241 PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL 300

Query: 301 VNEVTSEVR 310
           VNEV SE R
Sbjct: 301 VNEVISENR 302

[Close]

BLAST of Carg23968 vs. TrEMBL
Match: tr|F6H392|F6H392_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_04s0008g00820 PE=4 SV=1)

HSP 1 Score: 407.9 bits (1047), Expect = 2.1e-110
Identity = 229/317 (72.24%), Postives = 255/317 (80.44%), Query Frame = 0


Query: 1   MADEAQYSSGTDVASNKRKYDDHPPPM--VSRRPTGFSGPITSPSSDTANXXXXXXXXXX 60
           MA+E QYSSGTD A+NKRKY+D   P    +RRPTGFS PI++PS D+++          
Sbjct: 1   MAEEVQYSSGTD-ATNKRKYEDQTTPSQPSTRRPTGFSAPISTPSPDSSH-APPSYNSVP 60

Query: 61  XXMDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENG---GGFDSYEKGF 120
              DEIQLAKQRAQEIA+RL  ++                RPRVENG   GGFDS +KGF
Sbjct: 61  PPADEIQLAKQRAQEIAARLFSNASNT----------EAKRPRVENGAGAGGFDSGDKGF 120

Query: 121 SSG-SDLKSHLSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAK 180
           SS  SD+      S PSA PVSYG+QGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAK
Sbjct: 121 SSAPSDVGQKPMISTPSAIPVSYGYQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAK 180

Query: 181 IQVTRDMDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSE 240
           IQVTRDMDADPNS TR V+LMGTPDQIAKAEQLINDVLSEAE+GGSGIVS+RLTG +GSE
Sbjct: 181 IQVTRDMDADPNSPTRLVELMGTPDQIAKAEQLINDVLSEAEAGGSGIVSRRLTGQAGSE 240

Query: 241 QFVMKIPNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQI 300
           QFVMK+PNNKVGL+IGKGGETIK+MQARTGARIQVIPLHLPPGDTS ERT+QIDG+SEQI
Sbjct: 241 QFVMKVPNNKVGLIIGKGGETIKNMQARTGARIQVIPLHLPPGDTSMERTVQIDGTSEQI 300

Query: 301 ESAKQLVNEVTSEVRLQ 312
           ESAKQLVNEV SE R++
Sbjct: 301 ESAKQLVNEVISENRIR 305

[Close]

BLAST of Carg23968 vs. TrEMBL
Match: tr|W9R3G4|W9R3G4_9ROSA (Far upstream element-binding protein 2 OS=Morus notabilis OX=981085 GN=L484_019523 PE=4 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 6.4e-107
Identity = 222/312 (71.15%), Postives = 247/312 (79.17%), Query Frame = 0


Query: 1   MADEAQYSSGTDVASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDTANXXXXXXXXXXXX 60
           MADE QYSSGTD  SNKRKY++   P  SRRPTGFS PI+S S D+A             
Sbjct: 1   MADEPQYSSGTDTGSNKRKYEEQTTP-PSRRPTGFSAPISSTSPDSA---PPSYNSVPPP 60

Query: 61  MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENGGGFDSYEKGFSSG-S 120
           +DEIQLAKQRAQEIA+RL  ++                RPRVENGGGFDS +KGFSS  +
Sbjct: 61  VDEIQLAKQRAQEIAARLFNNASA---GAGVAPPLDAKRPRVENGGGFDSSDKGFSSAPT 120

Query: 121 DLKSHLSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTR 180
           D K H   SAPS+ PVSYGFQG+SKKI+IPNGRVGVIIGKGGETIKYLQLQSGAKIQVTR
Sbjct: 121 DSKPHNPISAPSSIPVSYGFQGSSKKIEIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTR 180

Query: 181 DMDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMK 240
           DMDAD NS TR V+LMGTP+QIAKAEQLI DVL+ AESG  G+ ++R+ G SGSEQFVMK
Sbjct: 181 DMDADLNSPTRMVELMGTPEQIAKAEQLITDVLAGAESGSQGMQTRRVGGQSGSEQFVMK 240

Query: 241 IPNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQ 300
           IPNNKVGLVIGKGGETIK+MQARTGARIQVIPLHLPPGD S ERTLQIDG+SEQIE+AKQ
Sbjct: 241 IPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDASIERTLQIDGTSEQIETAKQ 300

Query: 301 LVNEVTSEVRLQ 312
           LVNEV SE R++
Sbjct: 301 LVNEVISENRVR 305

[Close]

BLAST of Carg23968 vs. TrEMBL
Match: tr|A0A2I4GL67|A0A2I4GL67_9ROSI (far upstream element-binding protein 1 isoform X2 OS=Juglans regia OX=51240 GN=LOC109008855 PE=4 SV=1)

HSP 1 Score: 388.3 bits (996), Expect = 1.8e-104
Identity = 215/314 (68.47%), Postives = 247/314 (78.66%), Query Frame = 0


Query: 1   MADEAQYSSGTDVASNKRKYDDHPPPMV-SRRPTGFSGPITSPSSDTANXXXXXXXXXXX 60
           MADE QYSS +D  +NKRKY++   P   +RRPTGFS PI   S D+ +           
Sbjct: 1   MADEVQYSSVSDTNANKRKYEEPTAPSTGTRRPTGFSAPIAPQSPDSGHAPPPSYNNVPP 60

Query: 61  XMDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENG-GGFDSYEKGFSS- 120
            +D + LAKQRAQE+A+RL  +SG               RP++ENG  GFDS + GFSS 
Sbjct: 61  PVDGLTLAKQRAQEVAARLFNNSGAA----AVAGALDAKRPKIENGASGFDSLDSGFSSV 120

Query: 121 GSDLKSHLSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQV 180
             D+KSH  +S PSA PVSYGFQ +SKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQV
Sbjct: 121 PPDVKSHALHSVPSA-PVSYGFQSSSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQV 180

Query: 181 TRDMDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFV 240
           TRDMDADPNS TR V+LMGTP+QIAKAEQLIN+VL+EAE+GGSGIVS+R+TG +GS+ FV
Sbjct: 181 TRDMDADPNSPTRMVELMGTPEQIAKAEQLINEVLAEAEAGGSGIVSRRITGQTGSDSFV 240

Query: 241 MKIPNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESA 300
           MK+PNNKVGLVIGKGGETIK+MQARTGARIQVIPLHLPPGD STERTLQIDG+SEQIESA
Sbjct: 241 MKVPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDMSTERTLQIDGTSEQIESA 300

Query: 301 KQLVNEVTSEVRLQ 312
           KQLV EV SE R++
Sbjct: 301 KQLVFEVISENRVR 309

The following BLAST results are available for this feature:

BLAST of Carg23968 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022951946.1	3.9e-148	98.71	far upstream element-binding protein 1-like isoform X2 [Cucurbita moschata]	[more]
XP_022951945.1	3.9e-148	98.71	far upstream element-binding protein 1-like isoform X1 [Cucurbita moschata]	[more]
XP_023002827.1	3.3e-147	97.75	far upstream element-binding protein 1-like [Cucurbita maxima]	[more]
XP_023536823.1	3.4e-144	96.78	far upstream element-binding protein 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022997505.1	3.1e-137	86.82	far upstream element-binding protein 1 [Cucurbita maxima]	[more]

BLAST of Carg23968 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G25970.1	6.7e-94	63.72	KH domain-containing protein	[more]
AT4G10070.1	1.9e-40	50.59	KH domain-containing protein	[more]
AT1G33680.1	6.2e-39	49.69	KH domain-containing protein	[more]
AT5G04430.2	2.9e-12	34.13	binding to TOMV RNA 1L (long form)	[more]
AT1G14170.3	2.8e-07	26.43	RNA-binding KH domain-containing protein	[more]

BLAST of Carg23968 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8UVD9\|FUBP2_CHICK	1.5e-21	36.88	Far upstream element-binding protein 2 OS=Gallus gallus OX=9031 GN=KHSRP PE=1 SV...	[more]
sp\|Q3U0V1\|FUBP2_MOUSE	1.5e-21	29.88	Far upstream element-binding protein 2 OS=Mus musculus OX=10090 GN=Khsrp PE=1 SV...	[more]
sp\|Q99PF5\|FUBP2_RAT	1.5e-21	29.88	Far upstream element-binding protein 2 OS=Rattus norvegicus OX=10116 GN=Khsrp PE...	[more]
sp\|Q92945\|FUBP2_HUMAN	2.5e-21	29.46	Far upstream element-binding protein 2 OS=Homo sapiens OX=9606 GN=KHSRP PE=1 SV=...	[more]
sp\|Q96AE4\|FUBP1_HUMAN	6.8e-19	35.80	Far upstream element-binding protein 1 OS=Homo sapiens OX=9606 GN=FUBP1 PE=1 SV=...	[more]

BLAST of Carg23968 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LKT6\|A0A0A0LKT6_CUCSA	8.9e-133	86.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351790 PE=4 SV=1	[more]
tr\|A0A1S3B9Y5\|A0A1S3B9Y5_CUCME	3.4e-132	86.41	far upstream element-binding protein 1 OS=Cucumis melo OX=3656 GN=LOC103487791 P...	[more]
tr\|F6H392\|F6H392_VITVI	2.1e-110	72.24	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_04s0008g00820 PE=4 SV=...	[more]
tr\|W9R3G4\|W9R3G4_9ROSA	6.4e-107	71.15	Far upstream element-binding protein 2 OS=Morus notabilis OX=981085 GN=L484_0195...	[more]
tr\|A0A2I4GL67\|A0A2I4GL67_9ROSI	1.8e-104	68.47	far upstream element-binding protein 1 isoform X2 OS=Juglans regia OX=51240 GN=L...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036612	KH_dom_type_1_sf
IPR004088	KH_dom_type_1
IPR004087	KH_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23968-RA	Carg23968-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 287..307
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..109
None	No IPR available	PANTHER	PTHR10288:SF171	F17H15.1/F17H15.1	coord: 27..310
None	No IPR available	PANTHER	PTHR10288	KH DOMAIN CONTAINING RNA BINDING PROTEIN	coord: 27..310
None	No IPR available	PROSITE	PS50084	KH_TYPE_1	coord: 141..208 score: 17.925
None	No IPR available	PROSITE	PS50084	KH_TYPE_1	coord: 233..301 score: 17.024
None	No IPR available	CDD	cd00105	KH-I	coord: 238..301 e-value: 1.3548E-16 score: 71.8223
None	No IPR available	CDD	cd00105	KH-I	coord: 143..208 e-value: 1.48062E-14 score: 66.4295
IPR004087	K Homology domain	SMART	SM00322	kh_6	coord: 140..213 e-value: 5.0E-17 score: 72.6 coord: 232..306 e-value: 6.3E-16 score: 68.9
IPR004088	K Homology domain, type 1	PFAM	PF00013	KH_1	coord: 144..210 e-value: 1.2E-16 score: 60.2 coord: 237..303 e-value: 3.7E-19 score: 68.2
IPR036612	K Homology domain, type 1 superfamily	GENE3D	G3DSA:3.30.1370.10		coord: 135..231 e-value: 2.2E-25 score: 90.6
IPR036612	K Homology domain, type 1 superfamily	GENE3D	G3DSA:3.30.1370.10		coord: 232..311 e-value: 5.8E-25 score: 89.0
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	SSF54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 233..308
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	SSF54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 144..219

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23968	Cla022671	Watermelon (97103) v1	carwmB0695
Carg23968	Csa2G351790	Cucumber (Chinese Long) v2	carcuB0717
Carg23968	MELO3C010761	Melon (DHL92) v3.5.1	carmeB0696
Carg23968	CSPI02G18080	Wild cucumber (PI 183967)	carcpiB0732
Carg23968	Cucsa.395190	Cucumber (Gy14) v1	carcgyB0780
Carg23968	CmaCh05G001020	Cucurbita maxima (Rimu)	carcmaB0976
Carg23968	CmaCh12G006310	Cucurbita maxima (Rimu)	carcmaB0975
Carg23968	CmoCh05G001090	Cucurbita moschata (Rifu)	carcmoB0949
Carg23968	CmoCh12G005720	Cucurbita moschata (Rifu)	carcmoB0948
Carg23968	Lsi08G015750	Bottle gourd (USVL1VR-Ls)	carlsiB637
Carg23968	Cp4.1LG11g00080	Cucurbita pepo (Zucchini)	carcpeB0975
Carg23968	Cp4.1LG07g06180	Cucurbita pepo (Zucchini)	carcpeB0976
Carg23968	MELO3C010761.2	Melon (DHL92) v3.6.1	carmedB0709
Carg23968	CsaV3_2G025660	Cucumber (Chinese Long) v3	carcucB0735
Carg23968	Cla97C08G160630	Watermelon (97103) v2	carwmbB0726
Carg23968	Bhi04G000448	Wax gourd	carwgoB0819

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg23968	Carg11917	Silver-seed gourd	carcarB223

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23968	Cucumber (Gy14) v2	carcgybB0694
Carg23968	Watermelon (Charleston Gray)	carwcgB0674