CmoCh12G005720 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh12G005720
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RNA-binding KH domain protein
Location	Cmo_Chr12 : 3523915 .. 3530367 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTATCACCTCTCGTTTTCTCTTTCTAGGGTTTTCTCTCTGAAGCTAAACAATGGCTGACGAAGCGCAGTATTCATCTGGTACTGATGTTGCGTCCAATAAGCGCAAGTACGATGACCATCCTCCACCTATGGTTTCCCGCCGGCCGACTGGTTTTTCCGGCCCCATCACTTCCCCCTCCTCCGATACGGCCAATCCTCCGCCTCCCTCCTACAACAACGTCCCGCCCCCTATGGATGAGATCCAGCTTGCTAAGCAGCGTGCTCAGGAAATTGCCTCTCGGTTGATTATCTCCAGTGGTGGCGTCGGGGCCGGCGCTGGACCTGGCGTTGGGGCTGATGCCAAGCGCCCAAGGGTTGAGAATGGCGGCGGGTTTGATTCATACGAAAAGGGTTTTAGTTCTGGCTCAGGTGACTATAATCTTGCTGTCTCTTTCTTGCATCTTTCATGTTTCTGTATGCATGTCGAACATGTATTGCCTTGTTTTTAAATTTTTTTTATTATAGTGAAGTAGTTTGCACTTTTTATTGCATTTTTGTGGCACATCCCTGTGAGCTATATTTTAAATCTCAGTATTCACGGGGACATGGGTGATTAAACGTTTCAGGATGTCAGTATTAGTGGTATAGAGAAAGCTTTCTGTCAGTTCTATGGATGCCTATAAATGTCATATAGTTGATTTATTTTCCACCGTCTTTTACCCATGTTTCGATCAGAATTGTTGCTGAATGCTTTTATTTATCTATTTTTTTAAATGTATTTTAAAAATAAGTATCGTTTGCATGATTGGATGCCTATTTGTGACATTCATCTGCGTGGATGCAGACTTAAAGTCTCACATGTCTAATTCAGCTCCTTCAGCAACACCTGTTTCCTATGGGTTTCAAGGGACAAGCAAGAAAATCGACATTCCAAATGGTAGAGTGGGTGTAATTATTGGTAAAGGTGGTGAGACCATCAAGTACCTTCAGCTCCAGTCTGGGGCAAAAATACAAGTTACTCGTGACATGGATGCAGATCCCAATTCTGCTACCCGGACGGTTGATCTAATGGGTACTCCTGATCAAATTGCTAAGGCCGAGCAGTTGATTAATGATGTTCTTTCCGAGGTTTGTTTTAGTTTTCAAAATGCATGTGTACTCTTGATCAAATTGCTTTGTCAACTACTGTGTGTTGTCTCACCTCTTAAAAACATTGACATGCCGTGTAGCAATGGATTTGTTTGGAAAGGCCTTACCAATTTTTCCACTGCCAACATAATATTATTGGCAATATTTTCTTTATAAATTGCATACAAAATCTGATTGAATTGACGTTGTTGGAAGGGTTAGGCATTTAACTTGGCTTGATAATGTGCTTGTCTAATAAATTTAACATTTGATTCAGGCTGAATCTGGAGGTTCTGGCATAGTATCTCAAAGATTGACTGGTTCATCGGGATCTGAGCAGTTTGTTATGAAAATTCCCAATAATAAGGTTCTTTAAATATTTTTTTGGAATTTACCAAGTTCTGTCATCTACTTTGAGAACATTTAAATCTTTTTTTTAATTTATTTATTGGTGATACTTATGATTGTTATGATTTTAATTTTCTAGGTTGGCTTGGTTATTGGTAAAGGTGGTGAAACAATCAAAAGTATGCAAGCCAGGACTGGAGCTCGTATTCAGGTTTGTTTACATATATGTATATACATTTTTCATGTGTCTTGGAAGTCCTCCCCTTTCCTACCATTTTCTTTAATTTCAATTTTGCAACTTGTTCACTTTTTGTTTACGTAACATTAATTATTGTATTTAATTTGGATAACATGGGATTTTGTATTCTTCATTTTCACAGGTGATACCTTTGCACTTACCCCCTGGGGATACATCTACAGAAAGAACCTTACAGATTGATGGTTCAAGCGAACAGATTGAGTCAGCAAAACAGTTGGTTAATGAAGTTACCAGTGAGGTGCGTTTGCAGATTTTGGTTCCATTAAGATTGTTATGCCCTTTTGTAGTAGGAACTAATGCATAGTTGAAATCTAATTCCATGAATTTTTTGTGTGAATTTTTTATTTTTGAGGTGTTTGTAATGATTTTTCCTGATTGTACTTGGTTATTTTTGTAATTGTTGATGCAAGGTTGCCATACTATTCTAGAACTCCTTTAGCTCTTTCTATGAATTCTTTTAGTATTTAGTGTTATACCTCAACACCAAGGTGAGCATTAAGGACTCAGTGTTGATGGACGTTGAATTGTTTCATTGCTTTTACATGTTTATTCAGCTTCTTACTGTGATATAGCTGGGATTTGGTATTCATTTACTTCATATAGATTACACTGTTTTGTGAAGATTATGAAATGTTCTGTTTTCTGATTGTGTTCCTTATTGTAAATTGAAATGTTTTCTTTTTAAGACACATTCTTGTTACAGTCACGTTTTTTATTTGTTATAATTTTGTACACTAATCATTCTTCAATACAATGCTTCTGTTTTTCTTTCTGGAAGGAAATAGTTGATACTTCTCTCATTGTCTCTATGTTGTCTTGTTGGATAGCTGGAGTCAACAAGAATTTGGTTTCTTCGTCGTTCATTGAAAATACTTCTTTTCCCTTCTAAAGTTTACCCTGCTTAATGAACTGGAGCTTCTATGAAATTTGTCAAACACTGTTATATACTCAGCATTTGGATATGTTGTTCATTTGACTATAATGAATATGTTTCTGTGTTGCAAATCTGAAAAATCATTTTATTGCCGATGCTGTTAGTATGCCCGAGCAGTTTTACTATTTTAATTGTCTTAAACAGTAACTATTGAAGAGCCGTAAGGAGGTTTGTTCCCTCACTATGCTTACTTTCAACTTTGGGGTGAGCTCTGTTTGGATTGTATGTCGACCGTATCAATGCTGGTTTGTAGTTACACTCAAGGAATTAGAAGCATTGGAATATACAAACCTGTTATTACTTTTGGATCTCTTATAGCTTGAGATAGCTTTTAGGTCTTTTATCCATAATCGATCTGGATTTCTTATTATGTCTGCAATTGTTTATTCTACATATCCATTGATGCAGATATGGAGGATCTAAGGTTCCTGGGGTTTGGAAATAGGTGAAGTTATTTTTACAGATGGAACACCTAGTTAGTTTTTGAAGAGTGACTGGTACTTGAAGGGTTCCCATTGGTGATATGTTTGCTCCGTTGGATATTCAGTTTATCTGTCAATATTACTCTTATTAGGTTGTTAAGGTTATATGATCTCTCTCCTATTTAAGATGTCTGCAGCCGGTTCGGTATTATTCTTGGTTTTATATCTTGATTGTGGTATCTGAAAGGTTCCCATTGGTGATATGCTGGCTCCTTTGGATATTCAGTTTATCAGTCAATATTACTCTTATTAGGTTGTTAAGGTTACATGATATCTCTCCTATTTAAGATGTCTGCAACCCATTTGGTATTATTCTTGGTTTTATATCCTGATTGTGGTATCCGTAAGGTTCCCATTGGTGATATGCTGGCTCCTTTGGATATTCAGTTTATCAGTCAATATTACACTTATTAGATTGTTAGGGTTATATGATATCTCTCCTATATTTAAGATCTCTGCAGCCCATTTGGTATTATTCTTGGTTTTATATCGAAGTGTTAATATTGTTTGGATTATGGCCTGTTCAACCGTCACATGTGCTTATTAATTGTGTATCCTGCAACTGATATTGTTATTGGGAACTATTGTAGGGTTAGGGTAATTGGACCATTAGTGCACCAACATGGAATCCTTTATGTTGGTGTTATCTCAACATTGCTCTGGTATGGTTCTGAATCCCATATTCTAATGATATAAAGTGATAAATGTGGAGAGAAATTACAGGTTTGCTTGTTGGGTATTCAAGGTCGTTAGTATAATTTGAAAAGTCAACTTACCATACTAACATTCTTTTTCTAGTGGTTTAATTCAATTAGGAGGGTTTCAATCTTTTAGTCTGTCTAGATTTTCTCTCGTAATTTTCTTATTTGCTCCGTAATTCTAACCACGTGTGTTAGTTTGTTGTATTAACTTGCTCATGATTTCTTGTTGGAACTTGTATGTTTTAGTTTTAACATCACCTGATTGTTCATTGAGTTTTTGCCATTGATGGATATTCTTGAGTAAGTTTTTTAGACTGCAGCCTTGGTTTGCTGGCTATTACTGAAGAATAGTCTCTTATTTTTAATCTTCATTAATCATTTACCTCTGGAAGGGCGTCAAATCAGATTATTAATTATTTTAAATTTTTTGACGTAAATTGTCCTGAACTATCTTGTTATTGAAAATATTTTCTTATTTTAATCTTTATTGGCTATTTTTATTTACTTATCATGAGGTTATGGTTCATTTTCCTTCCAAGGCCGTTGCATATATTATCAATGTGTTTCTTCTCATCATCCATGTTGCTTCTCAGCCCTTTTCGAAAGTATTTTTCTTTTTCAATTATTTTGTGGTAAAAAACTGTGGGCGGTAGACATTTTTTCTCTTCACTATCTTCTACTAGTCTCTGGAGATTTGCTATTCTATAGGGTTGTTAGTTTTAGTTTGATATCCAGCTAGTTGATTCTTCTATAAAAAATTTGATTATTGGGAAGACATTGCTTTTTTTGTGCTTTGCTATGAACTTGTTTGCCTTTTGGGGCAATTAAGTTCATATATTCTGTTCTGTAAAAGCTTTTGTAGTCGTCTGGTTCTCTTTGCACCCATTCACTTCGAATAGGGAGAGGTTGAGCTTCTGCTGGAGTAACTCAATAACTCATCATCCAGTACGGTATGTTGGTGCTTTGTACTCTTCATAATGCAGTATAAGCTCCTTTAATCCCTACAAAATATACTGACTATGGCTTTTCATATCTGGGATTTCGGATTTGACATTTTTCTTCCCATTTCGCATATGAATGTTATGCTTTCCTATTCTTACCATGCATGGTTATTGTTCTCTCACATATAGTAGAGAAAGATTCACCTTGGTTTCTATATTCATGTTTTTCTTTCAGAATCGTGTGAGAAATTCAGGTATGTCGGGAGGGTATAATCAGCAAGGTTATCAAACTCGACCCCCTTCAAGTTGGGGGCCTCCTGGGGCTCCTCCAATGCAGCAACCTGGTTATGGCTATGGACAGCAAGGTGGATACTCTGGCCCTTCATCTCAGTATAACATGCAACAACCTCCTTATCAAGGTTATTCACAACCTGCATCTGGTGGATATGCTTCCAATTGGGACCAGTCTACTGTTCCACCAAATCAACCTGCTACTCAGGGAAGTGGTTATGATTACTACAATCAACAGCCCCCGCAGCAACAGCAGACACCTGGAGCTCCTGGTGCTACAGGAGACAACTCTGGTTACAGTTATGGTCAACCACAGGCATCTACCTATAATCAACAGGGTTATTCTCAAGATGGCTATGGTGGTGGTTATCATGCACCTCAGGCTGGTTACAGCCAGCCACCTACGTATGATCAGCAAGGTTATAGTTCTGCTCCAAACTATGGTAATGTGGCCAATGCAGCCCAAGATGGGATCAATTCATACGAGTCTCAGGGGGATTCATCACAGACAGTCCCTCCTGCACAACCCTCTTCGGTGAGCCAGCAAGGTTATGGTGCAAGTCAACAGCCTAGTCCTAACCCAGGGAGCTACCCTCCACCAAATCAGTCAGGGTACGGAATGACTGCACCTTCTCATACTGGTTATGGAAATCAACCAGCCGCTCAAACCGGGTATGGGGCTAGTTATGGACCTCCTCAAACTCAGAAACAACCTGCAAATCCTCCTGCATATGGTCAGAGCACTCAGTCGCCAAGCACCCCGAGTGGCTATGGGCAACCTGCTGCATTGTCGTCTGGATATTCCAGTTCTCAGGCTCCCACGACTGGGTACACTCAATCAGATTCTGGTTCTCAACGTGTCCCACCATCCAGTTATGGTACTGCAGCTCAGCCAGGGTTTGCGCCACCACCTTATGGTGTTCCTCCAACAAGTCAGCCAGGTTACGGGCAAGCTCCACCACCTTATAGCTCTTCTTATGGTGCTGGTTATCCTCAGCCTCCATATTCTTCCGATGGTAACACAGGTGGAGCTGCTGCTCGTGGGGGCTATGATTCTGCACCATCTGCTCAGTCGGCGCTGCAAAGTGGGGTTGCAAAAGCATCACCAAAGAGTTGATTCATGTATGTGTCACTATAGGTGTCTGTTTTGGAGAACAGTTAACTTCGTTGCTATGATTAGTTTTTTTTAGGCCAGGTAGAATTATGAAACCTCATTAATGTCTGAATTCTTTACTGTATTCGGTTTCGGTTTTGGTATGGTTAAAACGTTTATGGTGCTTTGCTATCCTCCCTTTGGCTTGCGCGTTTCTTTCTCTCTAGCGCGTTATCATTGTGTCAACCATGGTTACAGGCTACTTTAAATACAACTACTTACTTTGTGGAGCTAAAA

mRNA sequence

TTATCACCTCTCGTTTTCTCTTTCTAGGGTTTTCTCTCTGAAGCTAAACAATGGCTGACGAAGCGCAGTATTCATCTGGTACTGATGTTGCGTCCAATAAGCGCAAGTACGATGACCATCCTCCACCTATGGTTTCCCGCCGGCCGACTGGTTTTTCCGGCCCCATCACTTCCCCCTCCTCCGATACGGCCAATCCTCCGCCTCCCTCCTACAACAACGTCCCGCCCCCTATGGATGAGATCCAGCTTGCTAAGCAGCGTGCTCAGGAAATTGCCTCTCGGTTGATTATCTCCAGTGGTGGCGTCGGGGCCGGCGCTGGACCTGGCGTTGGGGCTGATGCCAAGCGCCCAAGGGTTGAGAATGGCGGCGGGTTTGATTCATACGAAAAGGGTTTTAGTTCTGGCTCAGACTTAAAGTCTCACATGTCTAATTCAGCTCCTTCAGCAACACCTGTTTCCTATGGGTTTCAAGGGACAAGCAAGAAAATCGACATTCCAAATGGTAGAGTGGGTGTAATTATTGGTAAAGGTGGTGAGACCATCAAGTACCTTCAGCTCCAGTCTGGGGCAAAAATACAAGTTACTCGTGACATGGATGCAGATCCCAATTCTGCTACCCGGACGGTTGATCTAATGGGTACTCCTGATCAAATTGCTAAGGCCGAGCAGTTGATTAATGATGTTCTTTCCGAGGCTGAATCTGGAGGTTCTGGCATAGTATCTCAAAGATTGACTGGTTCATCGGGATCTGAGCAGTTTGTTATGAAAATTCCCAATAATAAGGTTGGCTTGGTTATTGGTAAAGGTGGTGAAACAATCAAAAGTATGCAAGCCAGGACTGGAGCTCGTATTCAGGTGATACCTTTGCACTTACCCCCTGGGGATACATCTACAGAAAGAACCTTACAGATTGATGGTTCAAGCGAACAGATTGAGTCAGCAAAACAGTTGGTTAATGAAGTTACCAGTGAGGTGCGTTTGCAGATTTTGGTTCCATTAAGATTGTTATGCCCTTTTGTAGTAGGAACTAATGCATAGTTGAAATCTAATTCCATGAATTTTTTGTGTGAATTTTTTATTTTTGAGGTGTTTGTAATGATTTTTCCTGATTGTACTTGGTTATTTTTGTAATTGTTGATGCAAGGTTGCCATACTATTCTAGAACTCCTTTAGCTCTTTCTATGAATTCTTTTAGTATTTAGTGTTATACCTCAACACCAAGGTGAGCATTAAGGACTCAGTGTTGATGGACGTTGAATTGTTTCATTGCTTTTACATGTTTATTCAGCTTCTTACTGTGATATAGCTGGGATTTGGTATTCATTTACTTCATATAGATTACACTGTTTTGTGAAGATTATGAAATGTTCTGTTTTCTGATTGTGTTCCTTATTGTAAATTGAAATGTTTTCTTTTTAAGACACATTCTTGTTACAGTCACGTTTTTTATTTGTTATAATTTTGTACACTAATCATTCTTCAATACAATGCTTCTGTTTTTCTTTCTGGAAGGAAATAGTTGATACTTCTCTCATTGTCTCTATGTTGTCTTGTTGGATAGCTGGAGTCAACAAGAATTTGGTTTCTTCGTCGTTCATTGAAAATACTTCTTTTCCCTTCTAAAGTTTACCCTGCTTAATGAACTGGAGCTTCTATGAAATTTGTCAAACACTGTTATATACTCAGCATTTGGATATGTTGTTCATTTGACTATAATGAATATGTTTCTGTGTTGCAAATCTGAAAAATCATTTTATTGCCGATGCTGTTAGTATGCCCGAGCAGTTTTACTATTTTAATTGTCTTAAACAGTAACTATTGAAGAGCCGTAAGGAGGTTTGTTCCCTCACTATGCTTACTTTCAACTTTGGGGTGAGCTCTGTTTGGATTGTATGTCGACCGTATCAATGCTGGTTTGTAGTTACACTCAAGGAATTAGAAGCATTGGAATATACAAACCTGTTATTACTTTTGGATCTCTTATAGCTTGAGATAGCTTTTAGGTCTTTTATCCATAATCGATCTGGATTTCTTATTATGTCTGCAATTGTTTATTCTACATATCCATTGATGCAGATATGGAGGATCTAAGGTTCCTGGGGTTTGGAAATAGGTGAAGTTATTTTTACAGATGGAACACCTAGTTAGTTTTTGAAGAGTGACTGGTACTTGAAGGGTTCCCATTGGTGATATGTTTGCTCCGTTGGATATTCAGTTTATCTGTCAATATTACTCTTATTAGGTTGTTAAGGTTATATGATCTCTCTCCTATTTAAGATGTCTGCAGCCGGTTCGGTATTATTCTTGGTTTTATATCTTGATTGTGGTATCTGAAAGGTTCCCATTGGTGATATGCTGGCTCCTTTGGATATTCAGTTTATCAGTCAATATTACTCTTATTAGGTTGTTAAGGTTACATGATATCTCTCCTATTTAAGATGTCTGCAACCCATTTGGTATTATTCTTGGTTTTATATCCTGATTGTGGTATCCGTAAGGTTCCCATTGGTGATATGCTGGCTCCTTTGGATATTCAGTTTATCAGTCAATATTACACTTATTAGATTGTTAGGGTTATATGATATCTCTCCTATATTTAAGATCTCTGCAGCCCATTTGGTATTATTCTTGGTTTTATATCGAAGTGTTAATATTGTTTGGATTATGGCCTGTTCAACCGTCACATGTGCTTATTAATTGTGTATCCTGCAACTGATATTGTTATTGGGAACTATTGTAGGGTTAGGGTAATTGGACCATTAGTGCACCAACATGGAATCCTTTATGTTGGTGTTATCTCAACATTGCTCTGGTATGGTTCTGAATCCCATATTCTAATGATATAAAGTGATAAATGTGGAGAGAAATTACAGGTTTGCTTGTTGGGTATTCAAGGTCGTTAGTATAATTTGAAAAGTCAACTTACCATACTAACATTCTTTTTCTAGTGGTTTAATTCAATTAGGAGGGTTTCAATCTTTTAGTCTGTCTAGATTTTCTCTCGTAATTTTCTTATTTGCTCCGTAATTCTAACCACGTGTGTTAGTTTGTTGTATTAACTTGCTCATGATTTCTTGTTGGAACTTGTATGTTTTAGTTTTAACATCACCTGATTGTTCATTGAGTTTTTGCCATTGATGGATATTCTTGAGTAAGTTTTTTAGACTGCAGCCTTGGTTTGCTGGCTATTACTGAAGAATAGTCTCTTATTTTTAATCTTCATTAATCATTTACCTCTGGAAGGGCGTCAAATCAGATTATTAATTATTTTAAATTTTTTGACGTAAATTGTCCTGAACTATCTTGTTATTGAAAATATTTTCTTATTTTAATCTTTATTGGCTATTTTTATTTACTTATCATGAGGTTATGGTTCATTTTCCTTCCAAGGCCGTTGCATATATTATCAATGTGTTTCTTCTCATCATCCATGTTGCTTCTCAGCCCTTTTCGAAAGTATTTTTCTTTTTCAATTATTTTGTGGTAAAAAACTGTGGGCGGTAGACATTTTTTCTCTTCACTATCTTCTACTAGTCTCTGGAGATTTGCTATTCTATAGGGTTGTTAGTTTTAGTTTGATATCCAGCTAGTTGATTCTTCTATAAAAAATTTGATTATTGGGAAGACATTGCTTTTTTTGTGCTTTGCTATGAACTTGTTTGCCTTTTGGGGCAATTAAGTTCATATATTCTGTTCTGTAAAAGCTTTTGTAGTCGTCTGGTTCTCTTTGCACCCATTCACTTCGAATAGGGAGAGGTTGAGCTTCTGCTGGAGTAACTCAATAACTCATCATCCAGTACGGTATGTTGGTGCTTTGTACTCTTCATAATGCAGTATAAGCTCCTTTAATCCCTACAAAATATACTGACTATGGCTTTTCATATCTGGGATTTCGGATTTGACATTTTTCTTCCCATTTCGCATATGAATGTTATGCTTTCCTATTCTTACCATGCATGGTTATTGTTCTCTCACATATAGTAGAGAAAGATTCACCTTGGTTTCTATATTCATGTTTTTCTTTCAGAATCGTGTGAGAAATTCAGGTATGTCGGGAGGGTATAATCAGCAAGGTTATCAAACTCGACCCCCTTCAAGTTGGGGGCCTCCTGGGGCTCCTCCAATGCAGCAACCTGGTTATGGCTATGGACAGCAAGGTGGATACTCTGGCCCTTCATCTCAGTATAACATGCAACAACCTCCTTATCAAGGTTATTCACAACCTGCATCTGGTGGATATGCTTCCAATTGGGACCAGTCTACTGTTCCACCAAATCAACCTGCTACTCAGGGAAGTGGTTATGATTACTACAATCAACAGCCCCCGCAGCAACAGCAGACACCTGGAGCTCCTGGTGCTACAGGAGACAACTCTGGTTACAGTTATGGTCAACCACAGGCATCTACCTATAATCAACAGGGTTATTCTCAAGATGGCTATGGTGGTGGTTATCATGCACCTCAGGCTGGTTACAGCCAGCCACCTACGTATGATCAGCAAGGTTATAGTTCTGCTCCAAACTATGGTAATGTGGCCAATGCAGCCCAAGATGGGATCAATTCATACGAGTCTCAGGGGGATTCATCACAGACAGTCCCTCCTGCACAACCCTCTTCGGTGAGCCAGCAAGGTTATGGTGCAAGTCAACAGCCTAGTCCTAACCCAGGGAGCTACCCTCCACCAAATCAGTCAGGGTACGGAATGACTGCACCTTCTCATACTGGTTATGGAAATCAACCAGCCGCTCAAACCGGGTATGGGGCTAGTTATGGACCTCCTCAAACTCAGAAACAACCTGCAAATCCTCCTGCATATGGTCAGAGCACTCAGTCGCCAAGCACCCCGAGTGGCTATGGGCAACCTGCTGCATTGTCGTCTGGATATTCCAGTTCTCAGGCTCCCACGACTGGGTACACTCAATCAGATTCTGGTTCTCAACGTGTCCCACCATCCAGTTATGGTACTGCAGCTCAGCCAGGGTTTGCGCCACCACCTTATGGTGTTCCTCCAACAAGTCAGCCAGGTTACGGGCAAGCTCCACCACCTTATAGCTCTTCTTATGGTGCTGGTTATCCTCAGCCTCCATATTCTTCCGATGGTAACACAGGTGGAGCTGCTGCTCGTGGGGGCTATGATTCTGCACCATCTGCTCAGTCGGCGCTGCAAAGTGGGGTTGCAAAAGCATCACCAAAGAGTTGATTCATGTATGTGTCACTATAGGTGTCTGTTTTGGAGAACAGTTAACTTCGTTGCTATGATTAGTTTTTTTTAGGCCAGGTAGAATTATGAAACCTCATTAATGTCTGAATTCTTTACTGTATTCGGTTTCGGTTTTGGTATGGTTAAAACGTTTATGGTGCTTTGCTATCCTCCCTTTGGCTTGCGCGTTTCTTTCTCTCTAGCGCGTTATCATTGTGTCAACCATGGTTACAGGCTACTTTAAATACAACTACTTACTTTGTGGAGCTAAAA

Coding sequence (CDS)

ATGGCTGACGAAGCGCAGTATTCATCTGGTACTGATGTTGCGTCCAATAAGCGCAAGTACGATGACCATCCTCCACCTATGGTTTCCCGCCGGCCGACTGGTTTTTCCGGCCCCATCACTTCCCCCTCCTCCGATACGGCCAATCCTCCGCCTCCCTCCTACAACAACGTCCCGCCCCCTATGGATGAGATCCAGCTTGCTAAGCAGCGTGCTCAGGAAATTGCCTCTCGGTTGATTATCTCCAGTGGTGGCGTCGGGGCCGGCGCTGGACCTGGCGTTGGGGCTGATGCCAAGCGCCCAAGGGTTGAGAATGGCGGCGGGTTTGATTCATACGAAAAGGGTTTTAGTTCTGGCTCAGACTTAAAGTCTCACATGTCTAATTCAGCTCCTTCAGCAACACCTGTTTCCTATGGGTTTCAAGGGACAAGCAAGAAAATCGACATTCCAAATGGTAGAGTGGGTGTAATTATTGGTAAAGGTGGTGAGACCATCAAGTACCTTCAGCTCCAGTCTGGGGCAAAAATACAAGTTACTCGTGACATGGATGCAGATCCCAATTCTGCTACCCGGACGGTTGATCTAATGGGTACTCCTGATCAAATTGCTAAGGCCGAGCAGTTGATTAATGATGTTCTTTCCGAGGCTGAATCTGGAGGTTCTGGCATAGTATCTCAAAGATTGACTGGTTCATCGGGATCTGAGCAGTTTGTTATGAAAATTCCCAATAATAAGGTTGGCTTGGTTATTGGTAAAGGTGGTGAAACAATCAAAAGTATGCAAGCCAGGACTGGAGCTCGTATTCAGGTGATACCTTTGCACTTACCCCCTGGGGATACATCTACAGAAAGAACCTTACAGATTGATGGTTCAAGCGAACAGATTGAGTCAGCAAAACAGTTGGTTAATGAAGTTACCAGTGAGGTGCGTTTGCAGATTTTGGTTCCATTAAGATTGTTATGCCCTTTTGTAGTAGGAACTAATGCATAG

Homology

[Close]

BLAST of CmoCh12G005720 vs. Swiss-Prot
Match: FUBP2_MOUSE (Far upstream element-binding protein 2 OS=Mus musculus GN=Khsrp PE=1 SV=2)

HSP 1 Score: 102.4 bits (254), Expect = 9.3e-21
Identity = 76/257 (29.57%), Postives = 128/257 (49.81%), Query Frame = 1


Query: 51  PPSYNNVPPPMDEIQLAKQRAQEIASRLIISSGGVGAGAGPGVGADAKRPRVENGGGFDS 110
           PP         D    A QRA++IA+++   +        P  G   ++ ++E+G   DS
Sbjct: 62  PPGGGGPGIRKDAFADAVQRARQIAAKIGGDAATTVNNNTPDFGFGGQKRQLEDGDQPDS 121

Query: 111 YEKGFSSGSDLKSHMSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQ 170
            +K  S G  + S +    P            +++  +P+G VG+IIG+GGE I  +Q  
Sbjct: 122 -KKLASQGDSIGSQLGPIHPPPRT------SMTEEYRVPDGMVGLIIGRGGEQINKIQQD 181

Query: 171 SGAKIQVTRDMDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGS 230
           SG K+Q++ D    P    R+V L G P+ + KA+ +++D++S    G  G       G 
Sbjct: 182 SGCKVQISPDSGGLPE---RSVSLTGAPESVQKAKMMLDDIVSRGRGGPPGQFHDNANGG 241

Query: 231 SGSEQFVMKIPNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGS 290
                  + IP  K GLVIGKGGETIK +Q R G  +++I +     +T+ ++ L+I G 
Sbjct: 242 QNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAG--VKMILIQDGSQNTNVDKPLRIIGD 301

Query: 291 SEQIESAKQLVNEVTSE 308
             +++ A ++V ++  E
Sbjct: 302 PYKVQQACEMVMDILRE 306

[Close]

BLAST of CmoCh12G005720 vs. Swiss-Prot
Match: FUBP2_RAT (Far upstream element-binding protein 2 OS=Rattus norvegicus GN=Khsrp PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 9.3e-21
Identity = 76/257 (29.57%), Postives = 128/257 (49.81%), Query Frame = 1


Query: 51  PPSYNNVPPPMDEIQLAKQRAQEIASRLIISSGGVGAGAGPGVGADAKRPRVENGGGFDS 110
           PP         D    A QRA++IA+++   +        P  G   ++ ++E+G   DS
Sbjct: 62  PPGGGGPGIRKDAFADAVQRARQIAAKIGGDAATTVNNNTPDFGFGGQKRQLEDGDQPDS 121

Query: 111 YEKGFSSGSDLKSHMSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQ 170
            +K  S G  + S +    P            +++  +P+G VG+IIG+GGE I  +Q  
Sbjct: 122 -KKLASQGDSIGSQLGPIHPPPRT------SMTEEYRVPDGMVGLIIGRGGEQINKIQQD 181

Query: 171 SGAKIQVTRDMDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGS 230
           SG K+Q++ D    P    R+V L G P+ + KA+ +++D++S    G  G       G 
Sbjct: 182 SGCKVQISPDSGGLPE---RSVSLTGAPESVQKAKMMLDDIVSRGRGGPPGQFHDNANGG 241

Query: 231 SGSEQFVMKIPNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGS 290
                  + IP  K GLVIGKGGETIK +Q R G  +++I +     +T+ ++ L+I G 
Sbjct: 242 QNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAG--VKMILIQDGSQNTNVDKPLRIIGD 301

Query: 291 SEQIESAKQLVNEVTSE 308
             +++ A ++V ++  E
Sbjct: 302 PYKVQQACEMVMDILRE 306

[Close]

BLAST of CmoCh12G005720 vs. Swiss-Prot
Match: FUBP2_HUMAN (Far upstream element-binding protein 2 OS=Homo sapiens GN=KHSRP PE=1 SV=4)

HSP 1 Score: 100.5 bits (249), Expect = 3.5e-20
Identity = 83/285 (29.12%), Postives = 138/285 (48.42%), Query Frame = 1


Query: 25  PPMVSRRPTGFSGPITSPSSDTANPP--PPSYNNVPPPMDEIQLAKQRAQEIASRLIISS 84
           PP    R  G  G    P   +A  P  PP         D    A QRA++IA+++   +
Sbjct: 34  PPGAGDRGGGGPGG-GGPGGGSAGGPSQPPGGGGPGIRKDAFADAVQRARQIAAKIGGDA 93

Query: 85  GGVGAGAGPGVGADAKRPRVENGGGFDSYEKGFSSGSDLKSHMSNSAPSATPVSYGFQGT 144
                 + P  G   ++ ++E+G   +S +K  S G  + S +    P            
Sbjct: 94  ATTVNNSTPDFGFGGQKRQLEDGDQPES-KKLASQGDSISSQLGPIHPPPRT------SM 153

Query: 145 SKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSATRTVDLMGTPDQIA 204
           +++  +P+G VG+IIG+GGE I  +Q  SG K+Q++ D    P    R+V L G P+ + 
Sbjct: 154 TEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPE---RSVSLTGAPESVQ 213

Query: 205 KAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKIPNNKVGLVIGKGGETIKSMQAR 264
           KA+ +++D++S    G  G       G        + IP  K GLVIGKGGETIK +Q R
Sbjct: 214 KAKMMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQER 273

Query: 265 TGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQLVNEVTSE 308
            G  +++I +     +T+ ++ L+I G   +++ A ++V ++  E
Sbjct: 274 AG--VKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRE 305

[Close]

BLAST of CmoCh12G005720 vs. Swiss-Prot
Match: FUBP2_CHICK (Far upstream element-binding protein 2 OS=Gallus gallus GN=KHSRP PE=1 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.3e-19
Identity = 73/226 (32.30%), Postives = 119/226 (52.65%), Query Frame = 1


Query: 82  SGGVGAGAGPGVGADAKRPRVENGGGFDSYEKGFSSGSDLKSHMSNSAPSATPVSYGFQG 141
           SG VG   GP      +RP     GG        S+    +    +  P +T V+  ++ 
Sbjct: 161 SGPVGDPPGPPRAERGRRPPPALTGGALP-----SAALPPQLGPMHPPPRSTTVTEEYR- 220

Query: 142 TSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSATRTVDLMGTPDQI 201
                 +P+G VG+IIG+GGE I  +Q  SG K+Q++ D    P    R+V L G+P+ +
Sbjct: 221 ------VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPE---RSVSLTGSPEAV 280

Query: 202 AKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKIPNNKVGLVIGKGGETIKSMQA 261
            KA+ +++D++S    G  G       G +G+ Q +M IP  K GLVIGKGGETIK +Q 
Sbjct: 281 QKAKLMLDDIVSRGRGGPPGQFHDYANGQNGTVQEIM-IPAGKAGLVIGKGGETIKQLQE 340

Query: 262 RTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQLVNEVTSE 308
           R G  +++I +     +T+ ++ L+I G   +++ A ++V ++  E
Sbjct: 341 RAG--VKMIFIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRE 368

[Close]

BLAST of CmoCh12G005720 vs. Swiss-Prot
Match: FUBP3_HUMAN (Far upstream element-binding protein 3 OS=Homo sapiens GN=FUBP3 PE=1 SV=2)

HSP 1 Score: 98.2 bits (243), Expect = 1.8e-19
Identity = 65/206 (31.55%), Postives = 108/206 (52.43%), Query Frame = 1


Query: 124 HMSNSAPSATPVSYGFQGTSKKID----------------------IPNGRVGVIIGKGG 183
           H++NS P   P  YG+    + +D                      +P+  VG IIG+GG
Sbjct: 38  HLNNSTPLVDPSVYGYGVQKRPLDDGVGNQLGALVHQRTVITEEFKVPDKMVGFIIGRGG 97

Query: 184 ETIKYLQLQSGAKIQVTRDMDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSG 243
           E I  +Q +SG KIQ+  +    P    R   L GTP+ I +A++L+  ++    +G  G
Sbjct: 98  EQISRIQAESGCKIQIASESSGIPE---RPCVLTGTPESIEQAKRLLGQIVDRCRNG-PG 157

Query: 244 IVSQRLTGSSGSEQFVMKIPNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTST 303
             +   + S+  E   + IP +KVGLVIG+GGETIK +Q RTG  ++++ +   P  T  
Sbjct: 158 FHNDIDSNSTIQE---ILIPASKVGLVIGRGGETIKQLQERTG--VKMVMIQDGPLPTGA 217

Query: 304 ERTLQIDGSSEQIESAKQLVNEVTSE 308
           ++ L+I G + +++ A+++V E+  E
Sbjct: 218 DKPLRITGDAFKVQQAREMVLEIIRE 234

[Close]

BLAST of CmoCh12G005720 vs. TrEMBL
Match: A0A0A0LKT6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G351790 PE=4 SV=1)

HSP 1 Score: 530.4 bits (1365), Expect = 1.5e-147
Identity = 281/309 (90.94%), Postives = 289/309 (93.53%), Query Frame = 1


Query: 1   MADEAQYSSGTDVASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDTANPPPPSYNNVPPP 60
           MADEAQYSS TD  SNKRKYDD PPP   RRPTGFSGPITSPSSD+A    PSYNNVPPP
Sbjct: 1   MADEAQYSSATDTPSNKRKYDDQPPP---RRPTGFSGPITSPSSDSA----PSYNNVPPP 60

Query: 61  MDEIQLAKQRAQEIASRLIISSGGVGAGAGPGVGADAKRPRVENGGGFDSYEKGFSSGSD 120
           MDEIQLAKQRAQEIASRLIISSGGVGAGAGPGVGAD KRPRVENGGG+DSY+KGFSSG D
Sbjct: 61  MDEIQLAKQRAQEIASRLIISSGGVGAGAGPGVGADVKRPRVENGGGYDSYDKGFSSGPD 120

Query: 121 LKSHMSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD 180
           LK HMSNSAPSA P+SYGFQG+SKKI+IPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD
Sbjct: 121 LKPHMSNSAPSAIPISYGFQGSSKKIEIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD 180

Query: 181 MDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKI 240
           MDADPNS TR V+LMGTPDQIAKAEQLINDVLSEAESGGSGIVS+RLTG SGSEQFVMKI
Sbjct: 181 MDADPNSTTRMVELMGTPDQIAKAEQLINDVLSEAESGGSGIVSRRLTGPSGSEQFVMKI 240

Query: 241 PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL 300
           PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL
Sbjct: 241 PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL 300

Query: 301 VNEVTSEVR 310
           VNEV SE R
Sbjct: 301 VNEVISENR 302

[Close]

BLAST of CmoCh12G005720 vs. TrEMBL
Match: F6H392_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g00820 PE=4 SV=1)

HSP 1 Score: 433.7 bits (1114), Expect = 2.0e-118
Identity = 240/317 (75.71%), Postives = 268/317 (84.54%), Query Frame = 1


Query: 1   MADEAQYSSGTDVASNKRKYDDHPPPMV--SRRPTGFSGPITSPSSDTANPPPPSYNNVP 60
           MA+E QYSSGTD A+NKRKY+D   P    +RRPTGFS PI++PS D+++ PP SYN+VP
Sbjct: 1   MAEEVQYSSGTD-ATNKRKYEDQTTPSQPSTRRPTGFSAPISTPSPDSSHAPP-SYNSVP 60

Query: 61  PPMDEIQLAKQRAQEIASRLIISSGGVGAGAGPGVGADAKRPRVENG---GGFDSYEKGF 120
           PP DEIQLAKQRAQEIA+RL  ++             +AKRPRVENG   GGFDS +KGF
Sbjct: 61  PPADEIQLAKQRAQEIAARLFSNASNT----------EAKRPRVENGAGAGGFDSGDKGF 120

Query: 121 SSG-SDLKSHMSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAK 180
           SS  SD+      S PSA PVSYG+QGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAK
Sbjct: 121 SSAPSDVGQKPMISTPSAIPVSYGYQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAK 180

Query: 181 IQVTRDMDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSE 240
           IQVTRDMDADPNS TR V+LMGTPDQIAKAEQLINDVLSEAE+GGSGIVS+RLTG +GSE
Sbjct: 181 IQVTRDMDADPNSPTRLVELMGTPDQIAKAEQLINDVLSEAEAGGSGIVSRRLTGQAGSE 240

Query: 241 QFVMKIPNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQI 300
           QFVMK+PNNKVGL+IGKGGETIK+MQARTGARIQVIPLHLPPGDTS ERT+QIDG+SEQI
Sbjct: 241 QFVMKVPNNKVGLIIGKGGETIKNMQARTGARIQVIPLHLPPGDTSMERTVQIDGTSEQI 300

Query: 301 ESAKQLVNEVTSEVRLQ 312
           ESAKQLVNEV SE R++
Sbjct: 301 ESAKQLVNEVISENRIR 305

[Close]

BLAST of CmoCh12G005720 vs. TrEMBL
Match: W9R3G4_9ROSA (Far upstream element-binding protein 2 OS=Morus notabilis GN=L484_019523 PE=4 SV=1)

HSP 1 Score: 430.6 bits (1106), Expect = 1.7e-117
Identity = 238/312 (76.28%), Postives = 265/312 (84.94%), Query Frame = 1


Query: 1   MADEAQYSSGTDVASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDTANPPPPSYNNVPPP 60
           MADE QYSSGTD  SNKRKY++   P  SRRPTGFS PI+S S D+A   PPSYN+VPPP
Sbjct: 1   MADEPQYSSGTDTGSNKRKYEEQTTPP-SRRPTGFSAPISSTSPDSA---PPSYNSVPPP 60

Query: 61  MDEIQLAKQRAQEIASRLIISSGGVGAGAGPGVGADAKRPRVENGGGFDSYEKGFSSG-S 120
           +DEIQLAKQRAQEIA+RL  ++   GAG  P +  DAKRPRVENGGGFDS +KGFSS  +
Sbjct: 61  VDEIQLAKQRAQEIAARLF-NNASAGAGVAPPL--DAKRPRVENGGGFDSSDKGFSSAPT 120

Query: 121 DLKSHMSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTR 180
           D K H   SAPS+ PVSYGFQG+SKKI+IPNGRVGVIIGKGGETIKYLQLQSGAKIQVTR
Sbjct: 121 DSKPHNPISAPSSIPVSYGFQGSSKKIEIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTR 180

Query: 181 DMDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMK 240
           DMDAD NS TR V+LMGTP+QIAKAEQLI DVL+ AESG  G+ ++R+ G SGSEQFVMK
Sbjct: 181 DMDADLNSPTRMVELMGTPEQIAKAEQLITDVLAGAESGSQGMQTRRVGGQSGSEQFVMK 240

Query: 241 IPNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQ 300
           IPNNKVGLVIGKGGETIK+MQARTGARIQVIPLHLPPGD S ERTLQIDG+SEQIE+AKQ
Sbjct: 241 IPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDASIERTLQIDGTSEQIETAKQ 300

Query: 301 LVNEVTSEVRLQ 312
           LVNEV SE R++
Sbjct: 301 LVNEVISENRVR 305

[Close]

BLAST of CmoCh12G005720 vs. TrEMBL
Match: M5XJW9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002323mg PE=4 SV=1)

HSP 1 Score: 417.9 bits (1073), Expect = 1.1e-113
Identity = 236/316 (74.68%), Postives = 268/316 (84.81%), Query Frame = 1


Query: 1   MADEAQYSSGTDVASNKRKYDDH--PPPMVSRRPTGFSGPITSPSSDTANPPPPSYNNVP 60
           MADEAQYSSG D  +NKRKY++   PPP   RR TGFS PITS S D+A   PPSY+NVP
Sbjct: 1   MADEAQYSSGPDSGNNKRKYEEQTTPPP---RRATGFSAPITSSSPDSA---PPSYSNVP 60

Query: 61  PPMDEIQLAKQRAQEIASRLIIS-SGGVGAGAGPGVGADAKRPRVENGGGFDSYEKGFSS 120
           PP+D+IQ+AKQRAQEIA+RL  + SGGV AG     G +AKRPRVENG  FDS +KGFSS
Sbjct: 61  PPVDDIQVAKQRAQEIAARLFNNASGGVAAG-----GLEAKRPRVENG--FDSIDKGFSS 120

Query: 121 GS-DLKSHMSNSAPSATPVSYG-FQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKI 180
              DLK H+SN+APS+ PVSYG FQG+SKKID+PNGRVGVIIGKGGETIKYLQ QSGAKI
Sbjct: 121 APPDLKPHLSNTAPSSIPVSYGSFQGSSKKIDVPNGRVGVIIGKGGETIKYLQTQSGAKI 180

Query: 181 QVTRDMDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQ 240
           QVTRD DAD ++ TR V+LMGTP+QIAKAE LIN+VL+EAESGG  IVS+RLT  +G+EQ
Sbjct: 181 QVTRDGDADLSAPTRMVELMGTPEQIAKAEHLINEVLAEAESGGPAIVSRRLTVQAGAEQ 240

Query: 241 FVMKIPNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIE 300
           +V KIPNNKVGLVIGKGGETIK+MQARTGARIQVIPLHLPPGDTSTERTLQIDG+SEQIE
Sbjct: 241 YVTKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTLQIDGTSEQIE 300

Query: 301 SAKQLVNEVTSEVRLQ 312
           +AKQLVNEV SE R++
Sbjct: 301 AAKQLVNEVISENRVR 303

[Close]

BLAST of CmoCh12G005720 vs. TrEMBL
Match: A0A0B0PCN7_GOSAR (Far upstream element-binding 2 OS=Gossypium arboreum GN=F383_26926 PE=4 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 1.5e-110
Identity = 232/319 (72.73%), Postives = 263/319 (82.45%), Query Frame = 1


Query: 1   MADEAQYSSGTDVASNKRKYDDH-PPPMVSRRPTGFSGPITSPSSDTANPPPPSYNNVPP 60
           MADE QYSSG D  S+KRKYDD  PP  V RR TGFS P      D+A  PPPSYN+VPP
Sbjct: 1   MADEGQYSSGPDSGSHKRKYDDQGPPSSVGRRSTGFSSP------DSA--PPPSYNSVPP 60

Query: 61  PMDEIQLAKQRAQEIASRLIISSGGVGAGAGPGVGADAKRPRVENG--GGFDSYEKGFSS 120
           P+D I++AKQRAQEIA+RL  +S G          ++AKRPRVENG  GGFD+ EKGF S
Sbjct: 61  PLDGIEMAKQRAQEIAARLTAASAG----------SEAKRPRVENGSGGGFDN-EKGFMS 120

Query: 121 G-SDLKSHMSNSAPSATPVSYG-FQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKI 180
           G SD+K HMS+SAPSA PVSYG + GTSKKIDIP  RVGVIIGK GETIKYLQLQSGAKI
Sbjct: 121 GPSDIK-HMSSSAPSAIPVSYGSYHGTSKKIDIPQNRVGVIIGKAGETIKYLQLQSGAKI 180

Query: 181 QVTRDMDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQ 240
           QV RDMD+DPNS TR V+LMGT +QIAKAEQLINDVL+EAE+GGSGIVS+RLTG +GSE 
Sbjct: 181 QVQRDMDSDPNSVTRPVELMGTAEQIAKAEQLINDVLAEAEAGGSGIVSRRLTGHAGSEH 240

Query: 241 FVMKIPNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIE 300
           F MKIPNNKVGLVIGKGGETIK+MQARTGARIQVIPLHLPPGDTSTERTL IDG+SEQI+
Sbjct: 241 FEMKIPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDTSTERTLHIDGTSEQIK 299

Query: 301 SAKQLVNEVTSEVRLQILV 315
           +A++LV+EV SEV L +++
Sbjct: 301 TARELVDEVISEVCLDVIL 299

[Close]

BLAST of CmoCh12G005720 vs. TAIR10
Match: AT2G25970.1 (AT2G25970.1 KH domain-containing protein)

HSP 1 Score: 377.5 bits (968), Expect = 8.5e-105
Identity = 219/317 (69.09%), Postives = 247/317 (77.92%), Query Frame = 1


Query: 1   MADEAQYSSGTDVASNKRKYDDHP-PPMVSRRPTGFS-GPITSPSSDTANP---PPPSYN 60
           MADE+QYSS  D  SNKRKY++   PP  +RRPTGFS GPI S S D   P   PP SYN
Sbjct: 1   MADESQYSS--DTYSNKRKYEEPTAPPPSTRRPTGFSSGPIPSASVDPTAPTGLPPSSYN 60

Query: 61  NVPPPMDEIQLAKQRAQEIASRLIISSGGVGAGAGPGVGADAKRPRVENGGGFDSYE-KG 120
           +VPPPMDEIQ+AKQ+AQEIA+RL+ S             ADAKRPRV+NG  +D  + KG
Sbjct: 61  SVPPPMDEIQIAKQKAQEIAARLLNS-------------ADAKRPRVDNGASYDYGDNKG 120

Query: 121 FSSGSDLKSHMSNSAPSATPVSYG-FQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGA 180
           FSS       MS + PS+ PVSYG FQGT+KKIDIPN RVGVIIGKGGETIKYLQLQSGA
Sbjct: 121 FSSYPSEGKQMSGTVPSSIPVSYGSFQGTTKKIDIPNMRVGVIIGKGGETIKYLQLQSGA 180

Query: 181 KIQVTRDMDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGS----GIVSQRLTG 240
           KIQVTRDMDADPN ATRTVDL GTPDQI+KAEQLI DVL EAE+G +    G   +R+ G
Sbjct: 181 KIQVTRDMDADPNCATRTVDLTGTPDQISKAEQLITDVLQEAEAGNTAGSGGGGGRRMGG 240

Query: 241 SSGSEQFVMKIPNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDG 300
            +G++QFVMKIPNNKVGL+IGKGGETIKSMQA+TGARIQVIPLHLPPGD + ERTLQIDG
Sbjct: 241 QAGADQFVMKIPNNKVGLIIGKGGETIKSMQAKTGARIQVIPLHLPPGDPTPERTLQIDG 300

Query: 301 SSEQIESAKQLVNEVTS 307
            +EQIE AKQLVNE+ S
Sbjct: 301 ITEQIEHAKQLVNEIIS 302

[Close]

BLAST of CmoCh12G005720 vs. TAIR10
Match: AT4G10070.1 (AT4G10070.1 KH domain-containing protein)

HSP 1 Score: 166.8 bits (421), Expect = 2.3e-41
Identity = 88/174 (50.57%), Postives = 127/174 (72.99%), Query Frame = 1


Query: 138 GFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSATRTVDLMGT 197
           G Q T+++ID+P+ +VGV+IGKGGETI+YLQ  SGAKIQ+ RD +ADP+SA R V+++G+
Sbjct: 172 GTQSTTRRIDVPSSKVGVLIGKGGETIRYLQFNSGAKIQILRDSEADPSSALRPVEIIGS 231

Query: 198 PDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGS----EQFVMKIPNNKVGLVIGKGG 257
              I  AE+LI+ V++EAE+GGS  +  R   S+ +    EQ  +K+PN+KVGL+IG+GG
Sbjct: 232 VACIESAEKLISAVIAEAEAGGSPALVARGHPSTHAIGIPEQIEIKVPNDKVGLIIGRGG 291

Query: 258 ETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQLVNEVTSE 308
           ETIK+MQ R+GAR Q+IP H   GD   ERT++I G   QI+ A  ++ +V ++
Sbjct: 292 ETIKNMQTRSGARTQLIPQH-AEGDGLKERTVRISGDKMQIDIATDMIKDVMNQ 344

[Close]

BLAST of CmoCh12G005720 vs. TAIR10
Match: AT1G33680.1 (AT1G33680.1 KH domain-containing protein)

HSP 1 Score: 154.8 bits (390), Expect = 8.9e-38
Identity = 93/228 (40.79%), Postives = 143/228 (62.72%), Query Frame = 1


Query: 79  IISSGGVGAGAGPGVGADAKRPRVENGGGFDSYEKGFSSGSDL--KSHMSNSAPSATPVS 138
           +++   V  G+      D+++    N GG      G  S  ++  +S   N   +   V 
Sbjct: 168 VVAQKEVENGSKEVTDCDSQKEDEANAGGESKEVNGSVSHDEIGDESKEVNGGSTHKEVD 227

Query: 139 YGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSATRTVDLMG 198
              Q T+++ID+P+ +VG +IGKGGE ++YLQ+ SGAKIQ+ RD +ADP+SA R V+++G
Sbjct: 228 -DTQSTTRRIDVPSSKVGTLIGKGGEMVRYLQVNSGAKIQIRRDAEADPSSALRPVEIIG 287

Query: 199 TPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKIPNNKVGLVIGKGGETI 258
           T   I KAE+LIN V++E E+GG   ++ R       EQ  +K+P++KVG++IG+GGETI
Sbjct: 288 TVSCIEKAEKLINAVIAEVEAGGVPALAAR----GVPEQMEIKVPSDKVGVIIGRGGETI 347

Query: 259 KSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQLVNEV 305
           K+MQ ++ ARIQ+IP +   GD S ERT++I G   QI+ A  L+ +V
Sbjct: 348 KNMQTKSRARIQLIPQN--EGDASKERTVRISGDKRQIDIATALIKDV 388

[Close]

BLAST of CmoCh12G005720 vs. TAIR10
Match: AT5G04430.2 (AT5G04430.2 binding to TOMV RNA 1L (long form))

HSP 1 Score: 69.7 bits (169), Expect = 3.8e-12
Identity = 49/150 (32.67%), Postives = 76/150 (50.67%), Query Frame = 1


Query: 124 HMSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDA 183
           H S+ A SA       + T  +  + N   G +IGKGG TI   Q +SGA+IQ++R+ + 
Sbjct: 23  HDSSEADSAE------KPTHIRFLVSNAAAGSVIGKGGSTITEFQAKSGARIQLSRNQEF 82

Query: 184 DPNSATRTVDLMGTPDQIAKAEQLINDVL-SEAESGGSGIVSQRLTGSSGSEQFVMKIPN 243
            P +  R + + G+  ++    +LI D L SE  +     V  R        +  + +PN
Sbjct: 83  FPGTTDRIIMISGSIKEVVNGLELILDKLHSELHAEDGNEVEPR-------RRIRLVVPN 142

Query: 244 NKVGLVIGKGGETIKSMQARTGARIQVIPL 273
           +  G +IGKGG TIKS    + A I++ PL
Sbjct: 143 SSCGGIIGKGGATIKSFIEESKAGIKISPL 159

[Close]

BLAST of CmoCh12G005720 vs. TAIR10
Match: AT5G64390.3 (AT5G64390.3 RNA-binding KH domain-containing protein)

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-08
Identity = 52/206 (25.24%), Postives = 94/206 (45.63%), Query Frame = 1


Query: 103 ENGGGFDSYEKGFSSGSDLKSHMSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGE 162
           +  G FD    GF S   +K+H +    SA  V  G    + ++  P   VG +IGK G 
Sbjct: 12  KRSGAFDP-GSGFGSSKRVKTHHTQLL-SALVVPVGH--AAFRLLCPLSHVGAVIGKSGN 71

Query: 163 TIKYLQLQSGAKIQVTRDMDADPNSATRTVDLMGTPDQI---------AKAEQLINDVLS 222
            IK LQ  +GAKI+V       P+     +    +  ++         A+ E+   +V  
Sbjct: 72  VIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSRVKLGANNNGNAEGEKKEEEVEV 131

Query: 223 EAESGGSGIVSQRLTGSSGSEQFVMKI--PNNKVGLVIGKGGETIKSMQARTGARIQVIP 282
               G    V + L   + S+  V ++   ++  G VIGKGG+ + S++  TG +I +  
Sbjct: 132 SKAQGALIKVFELLAAEADSDTVVCRLLTESSHAGAVIGKGGQMVGSIRKETGCKISIRI 191

Query: 283 LHLPPGDTSTERTLQIDGSSEQIESA 298
            +LP    + +  ++++G++  ++ A
Sbjct: 192 ENLPICADTDDEMVEVEGNAIAVKKA 213

[Close]

BLAST of CmoCh12G005720 vs. NCBI nr
Match: gi|449450341|ref|XP_004142921.1| (PREDICTED: far upstream element-binding protein 1 [Cucumis sativus])

HSP 1 Score: 530.4 bits (1365), Expect = 2.2e-147
Identity = 281/309 (90.94%), Postives = 289/309 (93.53%), Query Frame = 1


Query: 1   MADEAQYSSGTDVASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDTANPPPPSYNNVPPP 60
           MADEAQYSS TD  SNKRKYDD PPP   RRPTGFSGPITSPSSD+A    PSYNNVPPP
Sbjct: 1   MADEAQYSSATDTPSNKRKYDDQPPP---RRPTGFSGPITSPSSDSA----PSYNNVPPP 60

Query: 61  MDEIQLAKQRAQEIASRLIISSGGVGAGAGPGVGADAKRPRVENGGGFDSYEKGFSSGSD 120
           MDEIQLAKQRAQEIASRLIISSGGVGAGAGPGVGAD KRPRVENGGG+DSY+KGFSSG D
Sbjct: 61  MDEIQLAKQRAQEIASRLIISSGGVGAGAGPGVGADVKRPRVENGGGYDSYDKGFSSGPD 120

Query: 121 LKSHMSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD 180
           LK HMSNSAPSA P+SYGFQG+SKKI+IPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD
Sbjct: 121 LKPHMSNSAPSAIPISYGFQGSSKKIEIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD 180

Query: 181 MDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKI 240
           MDADPNS TR V+LMGTPDQIAKAEQLINDVLSEAESGGSGIVS+RLTG SGSEQFVMKI
Sbjct: 181 MDADPNSTTRMVELMGTPDQIAKAEQLINDVLSEAESGGSGIVSRRLTGPSGSEQFVMKI 240

Query: 241 PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL 300
           PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL
Sbjct: 241 PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL 300

Query: 301 VNEVTSEVR 310
           VNEV SE R
Sbjct: 301 VNEVISENR 302

[Close]

BLAST of CmoCh12G005720 vs. NCBI nr
Match: gi|659087503|ref|XP_008444487.1| (PREDICTED: far upstream element-binding protein 1 [Cucumis melo])

HSP 1 Score: 528.5 bits (1360), Expect = 8.4e-147
Identity = 280/309 (90.61%), Postives = 288/309 (93.20%), Query Frame = 1


Query: 1   MADEAQYSSGTDVASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDTANPPPPSYNNVPPP 60
           MADEAQYSS  D  SNKRKYDD PPP   RRPTGFSGPITSPSSD+A    PSYNNVPPP
Sbjct: 1   MADEAQYSSANDTPSNKRKYDDQPPP---RRPTGFSGPITSPSSDSA----PSYNNVPPP 60

Query: 61  MDEIQLAKQRAQEIASRLIISSGGVGAGAGPGVGADAKRPRVENGGGFDSYEKGFSSGSD 120
           MDEIQLAKQRAQEIASRLIISSGGVGAGAGPGVGAD KRPRVENGGG+DSY+KGFSSG D
Sbjct: 61  MDEIQLAKQRAQEIASRLIISSGGVGAGAGPGVGADVKRPRVENGGGYDSYDKGFSSGPD 120

Query: 121 LKSHMSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD 180
           LK HMSNSAPSA P+SYGFQG+SKKI+IPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD
Sbjct: 121 LKPHMSNSAPSAIPISYGFQGSSKKIEIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD 180

Query: 181 MDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKI 240
           MDADPNS TR V+LMGTPDQIAKAEQLINDVLSEAESGGSGIVS+RLTG SGSEQFVMKI
Sbjct: 181 MDADPNSTTRMVELMGTPDQIAKAEQLINDVLSEAESGGSGIVSRRLTGPSGSEQFVMKI 240

Query: 241 PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL 300
           PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL
Sbjct: 241 PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL 300

Query: 301 VNEVTSEVR 310
           VNEV SE R
Sbjct: 301 VNEVISENR 302

[Close]

BLAST of CmoCh12G005720 vs. NCBI nr
Match: gi|1009134483|ref|XP_015884471.1| (PREDICTED: basic salivary proline-rich protein 2 [Ziziphus jujuba])

HSP 1 Score: 441.4 bits (1134), Expect = 1.4e-120
Identity = 244/313 (77.96%), Postives = 269/313 (85.94%), Query Frame = 1


Query: 1   MADEAQYSSGTDVASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDTANPPPPSYNNVPPP 60
           MADEAQYSSGTD ASNKRKY++   P   RR TGFS PI+S S D+A   P SYN+VPPP
Sbjct: 1   MADEAQYSSGTDSASNKRKYEEQTTPPPPRRATGFSAPISS-SPDSA---PASYNSVPPP 60

Query: 61  MDEIQLAKQRAQEIASRLIISSG-GVGAGAGPGVGADAKRPRVENGGGFDSYEKGFSS-G 120
           +DEIQLAKQRAQEIA+RL  ++  G GAGAG     DAKRPRVENG GFDS +KGFSS  
Sbjct: 61  VDEIQLAKQRAQEIAARLFNNASVGAGAGAGAAGALDAKRPRVENGSGFDSNDKGFSSVP 120

Query: 121 SDLKSHMSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVT 180
           SD K  +SNS PS+ PVSYGFQGTSK+IDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVT
Sbjct: 121 SDGKPFISNSNPSSIPVSYGFQGTSKRIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVT 180

Query: 181 RDMDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVM 240
           RDMDAD NS TR V+LMGTP+QI+KAEQLINDVL+ AESGG GIVS+RLTG +GSEQFVM
Sbjct: 181 RDMDADLNSPTRMVELMGTPEQISKAEQLINDVLAGAESGGQGIVSRRLTGQAGSEQFVM 240

Query: 241 KIPNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAK 300
           KIPNNKVGLVIGKGGETIK+MQ RTGARIQVIPLHLPPGDTS ERTLQIDG+SEQI++AK
Sbjct: 241 KIPNNKVGLVIGKGGETIKNMQGRTGARIQVIPLHLPPGDTSIERTLQIDGTSEQIDNAK 300

Query: 301 QLVNEVTSEVRLQ 312
           QLVNEV SE R++
Sbjct: 301 QLVNEVISENRVR 309

[Close]

BLAST of CmoCh12G005720 vs. NCBI nr
Match: gi|296081618|emb|CBI20623.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 433.7 bits (1114), Expect = 2.8e-118
Identity = 240/317 (75.71%), Postives = 268/317 (84.54%), Query Frame = 1


Query: 1   MADEAQYSSGTDVASNKRKYDDHPPPMV--SRRPTGFSGPITSPSSDTANPPPPSYNNVP 60
           MA+E QYSSGTD A+NKRKY+D   P    +RRPTGFS PI++PS D+++ PP SYN+VP
Sbjct: 1   MAEEVQYSSGTD-ATNKRKYEDQTTPSQPSTRRPTGFSAPISTPSPDSSHAPP-SYNSVP 60

Query: 61  PPMDEIQLAKQRAQEIASRLIISSGGVGAGAGPGVGADAKRPRVENG---GGFDSYEKGF 120
           PP DEIQLAKQRAQEIA+RL  ++             +AKRPRVENG   GGFDS +KGF
Sbjct: 61  PPADEIQLAKQRAQEIAARLFSNASNT----------EAKRPRVENGAGAGGFDSGDKGF 120

Query: 121 SSG-SDLKSHMSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAK 180
           SS  SD+      S PSA PVSYG+QGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAK
Sbjct: 121 SSAPSDVGQKPMISTPSAIPVSYGYQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAK 180

Query: 181 IQVTRDMDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSE 240
           IQVTRDMDADPNS TR V+LMGTPDQIAKAEQLINDVLSEAE+GGSGIVS+RLTG +GSE
Sbjct: 181 IQVTRDMDADPNSPTRLVELMGTPDQIAKAEQLINDVLSEAEAGGSGIVSRRLTGQAGSE 240

Query: 241 QFVMKIPNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQI 300
           QFVMK+PNNKVGL+IGKGGETIK+MQARTGARIQVIPLHLPPGDTS ERT+QIDG+SEQI
Sbjct: 241 QFVMKVPNNKVGLIIGKGGETIKNMQARTGARIQVIPLHLPPGDTSMERTVQIDGTSEQI 300

Query: 301 ESAKQLVNEVTSEVRLQ 312
           ESAKQLVNEV SE R++
Sbjct: 301 ESAKQLVNEVISENRIR 305

[Close]

BLAST of CmoCh12G005720 vs. NCBI nr
Match: gi|225429462|ref|XP_002278761.1| (PREDICTED: far upstream element-binding protein 2 [Vitis vinifera])

HSP 1 Score: 433.7 bits (1114), Expect = 2.8e-118
Identity = 240/317 (75.71%), Postives = 268/317 (84.54%), Query Frame = 1


Query: 1   MADEAQYSSGTDVASNKRKYDDHPPPMV--SRRPTGFSGPITSPSSDTANPPPPSYNNVP 60
           MA+E QYSSGTD A+NKRKY+D   P    +RRPTGFS PI++PS D+++ PP SYN+VP
Sbjct: 1   MAEEVQYSSGTD-ATNKRKYEDQTTPSQPSTRRPTGFSAPISTPSPDSSHAPP-SYNSVP 60

Query: 61  PPMDEIQLAKQRAQEIASRLIISSGGVGAGAGPGVGADAKRPRVENG---GGFDSYEKGF 120
           PP DEIQLAKQRAQEIA+RL  ++             +AKRPRVENG   GGFDS +KGF
Sbjct: 61  PPADEIQLAKQRAQEIAARLFSNASNT----------EAKRPRVENGAGAGGFDSGDKGF 120

Query: 121 SSG-SDLKSHMSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAK 180
           SS  SD+      S PSA PVSYG+QGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAK
Sbjct: 121 SSAPSDVGQKPMISTPSAIPVSYGYQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAK 180

Query: 181 IQVTRDMDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSE 240
           IQVTRDMDADPNS TR V+LMGTPDQIAKAEQLINDVLSEAE+GGSGIVS+RLTG +GSE
Sbjct: 181 IQVTRDMDADPNSPTRLVELMGTPDQIAKAEQLINDVLSEAEAGGSGIVSRRLTGQAGSE 240

Query: 241 QFVMKIPNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQI 300
           QFVMK+PNNKVGL+IGKGGETIK+MQARTGARIQVIPLHLPPGDTS ERT+QIDG+SEQI
Sbjct: 241 QFVMKVPNNKVGLIIGKGGETIKNMQARTGARIQVIPLHLPPGDTSMERTVQIDGTSEQI 300

Query: 301 ESAKQLVNEVTSEVRLQ 312
           ESAKQLVNEV SE R++
Sbjct: 301 ESAKQLVNEVISENRIR 305

The following BLAST results are available for this feature:

BLAST of CmoCh12G005720 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FUBP2_MOUSE	9.3e-21	29.57	Far upstream element-binding protein 2 OS=Mus musculus GN=Khsrp PE=1 SV=2	[more]
FUBP2_RAT	9.3e-21	29.57	Far upstream element-binding protein 2 OS=Rattus norvegicus GN=Khsrp PE=1 SV=1	[more]
FUBP2_HUMAN	3.5e-20	29.12	Far upstream element-binding protein 2 OS=Homo sapiens GN=KHSRP PE=1 SV=4	[more]
FUBP2_CHICK	1.3e-19	32.30	Far upstream element-binding protein 2 OS=Gallus gallus GN=KHSRP PE=1 SV=1	[more]
FUBP3_HUMAN	1.8e-19	31.55	Far upstream element-binding protein 3 OS=Homo sapiens GN=FUBP3 PE=1 SV=2	[more]

BLAST of CmoCh12G005720 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKT6_CUCSA	1.5e-147	90.94	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G351790 PE=4 SV=1	[more]
F6H392_VITVI	2.0e-118	75.71	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g00820 PE=4 SV=...	[more]
W9R3G4_9ROSA	1.7e-117	76.28	Far upstream element-binding protein 2 OS=Morus notabilis GN=L484_019523 PE=4 SV...	[more]
M5XJW9_PRUPE	1.1e-113	74.68	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002323mg PE=4 SV=1	[more]
A0A0B0PCN7_GOSAR	1.5e-110	72.73	Far upstream element-binding 2 OS=Gossypium arboreum GN=F383_26926 PE=4 SV=1	[more]

BLAST of CmoCh12G005720 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G25970.1	8.5e-105	69.09	KH domain-containing protein	[more]
AT4G10070.1	2.3e-41	50.57	KH domain-containing protein	[more]
AT1G33680.1	8.9e-38	40.79	KH domain-containing protein	[more]
AT5G04430.2	3.8e-12	32.67	binding to TOMV RNA 1L (long form)	[more]
AT5G64390.3	1.1e-08	25.24	RNA-binding KH domain-containing protein	[more]

BLAST of CmoCh12G005720 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449450341\|ref\|XP_004142921.1\|	2.2e-147	90.94	PREDICTED: far upstream element-binding protein 1 [Cucumis sativus]	[more]
gi\|659087503\|ref\|XP_008444487.1\|	8.4e-147	90.61	PREDICTED: far upstream element-binding protein 1 [Cucumis melo]	[more]
gi\|1009134483\|ref\|XP_015884471.1\|	1.4e-120	77.96	PREDICTED: basic salivary proline-rich protein 2 [Ziziphus jujuba]	[more]
gi\|296081618\|emb\|CBI20623.3\|	2.8e-118	75.71	unnamed protein product [Vitis vinifera]	[more]
gi\|225429462\|ref\|XP_002278761.1\|	2.8e-118	75.71	PREDICTED: far upstream element-binding protein 2 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004087	KH_dom
IPR004088	KH_dom_type_1

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0003723	RNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006606	protein import into nucleus
biological_process	GO:0008150	biological_process
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G005720.1	CmoCh12G005720.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004087	K Homology domain	SMART	SM00322	kh_6	coord: 232..306 score: 6.3E-16coord: 140..213 score: 5.0
IPR004088	K Homology domain, type 1	GENE3D	G3DSA:3.30.1370.10		coord: 145..207 score: 2.7E-21coord: 246..307 score: 1.5
IPR004088	K Homology domain, type 1	PFAM	PF00013	KH_1	coord: 144..210 score: 3.8E-16coord: 237..303 score: 3.7
IPR004088	K Homology domain, type 1	PROFILE	PS50084	KH_TYPE_1	coord: 233..301 score: 17.024coord: 141..208 score: 17
IPR004088	K Homology domain, type 1	unknown	SSF54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 144..219 score: 1.02E-17coord: 233..308 score: 8.33
None	No IPR available	unknown	Coil	Coil	coord: 287..307 scor
None	No IPR available	GENE3D	G3DSA:3.30.300.120		coord: 208..245 score: 8.
None	No IPR available	PANTHER	PTHR10288	KH DOMAIN CONTAINING RNA BINDING PROTEIN	coord: 51..311 score: 1.5E
None	No IPR available	PANTHER	PTHR10288:SF171	F17H15.1/F17H15.1-RELATED	coord: 51..311 score: 1.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh12G005720	Cucsa.395190	Cucumber (Gy14) v1	cgycmoB1086
CmoCh12G005720	CmaCh05G001020	Cucurbita maxima (Rimu)	cmacmoB770
CmoCh12G005720	CmaCh12G006310	Cucurbita maxima (Rimu)	cmacmoB176
CmoCh12G005720	Cla022671	Watermelon (97103) v1	cmowmB134
CmoCh12G005720	Csa2G351790	Cucumber (Chinese Long) v2	cmocuB158
CmoCh12G005720	MELO3C010761	Melon (DHL92) v3.5.1	cmomeB146
CmoCh12G005720	CSPI02G18080	Wild cucumber (PI 183967)	cmocpiB160
CmoCh12G005720	Lsi08G015750	Bottle gourd (USVL1VR-Ls)	cmolsiB175
CmoCh12G005720	Cp4.1LG07g06180	Cucurbita pepo (Zucchini)	cmocpeB174
CmoCh12G005720	Cp4.1LG11g00080	Cucurbita pepo (Zucchini)	cmocpeB154
CmoCh12G005720	MELO3C010761.2	Melon (DHL92) v3.6.1	cmomedB161
CmoCh12G005720	CsaV3_2G025660	Cucumber (Chinese Long) v3	cmocucB0186
CmoCh12G005720	Cla97C08G160630	Watermelon (97103) v2	cmowmbB178
CmoCh12G005720	Bhi04G000448	Wax gourd	cmowgoB0190
CmoCh12G005720	Carg11917	Silver-seed gourd	carcmoB0257
CmoCh12G005720	Carg23968	Silver-seed gourd	carcmoB0948

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh12G005720	CmoCh05G001090	Cucurbita moschata (Rifu)	cmocmoB156

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh12G005720	Cucurbita moschata (Rifu)	cmocmoB004
CmoCh12G005720	Cucurbita moschata (Rifu)	cmocmoB083
CmoCh12G005720	Watermelon (Charleston Gray)	cmowcgB161
CmoCh12G005720	Cucurbita pepo (Zucchini)	cmocpeB161
CmoCh12G005720	Cucurbita pepo (Zucchini)	cmocpeB171
CmoCh12G005720	Cucurbita pepo (Zucchini)	cmocpeB172
CmoCh12G005720	Bottle gourd (USVL1VR-Ls)	cmolsiB166
CmoCh12G005720	Bottle gourd (USVL1VR-Ls)	cmolsiB171
CmoCh12G005720	Cucumber (Gy14) v2	cgybcmoB053
CmoCh12G005720	Cucumber (Gy14) v2	cgybcmoB171
CmoCh12G005720	Silver-seed gourd	carcmoB0440