Carg23968-RA (mRNA) Silver-seed gourd

Overview
NameCarg23968-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionFar upstream element-binding protein like
LocationCucurbita_argyrosperma_scaffold_253 : 195594 .. 199113 (+)
Sequence length2537
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGAAGAAAACCCATCCTCTTTATCACCTCTCGTTTTCTCTTTCTAGGGTTTTCTCTCTGAAGCTAAACAATGGCTGACGAAGCGCAGTATTCATCTGGTACTGATGTTGCGTCCAATAAGCGCAAGTACGATGACCATCCTCCACCTATGGTTTCCCGCCGGCCGACTGGTTTTTCCGGCCCCATCACTTCCCCCTCCTCCGATACGGCCAATCCTCCGCCTCCCTCCTACAACAACGTCCCGCCCCCTATGGATGAGATCCAGCTTGCTAAGCAGCGTGCTCAGGAAATTGCCTCTCGGTTGATTATCTCCAGTGGTGGCGTCGGGGCCGGCGCTGGACCTGGCGTTGGGGCTGATGCCAAGCGCCCAAGGGTTGAGAATGGCGGCGGGTTTGATTCATACGAAAAGGGTTTTAGTTCTGGCTCAGGTGACTATAATCTTGCTGTCTCTTTCTTGCATCTTTCATGTTTCTGTATGCATGTCGAACATGTATTGCCTTGTTTTTAAATTTTTTTTATTATAGTGAAGTAGTTTGCACTTTTTATTGCATTTTTGTGGCACATCCCTGTGAGCTATATTTTAAATCTCAGTATTCACGGGGACATGGGTGATTAAACGTTTCAGGATGTCAGTATTAGTGGTATAGAGAAAGCTTTCTGTCAGTTCTATGGATGCCTATAAATGTCATATAGTTGATTTATTTTCCACCGTCTTTTACCCATGTTTCGATCAGAATTGTTGCTGAATGCTTTTATTTATCTATTTTTTTAAATGTATTTTAAAAATAAGTATCGTTTGCATGATTGGATGCCTATTTGTGACATTCATCTGCGTGGATGCAGACTTAAAGTCTCACTTGTCTAATTCAGCTCCTTCAGCAACACCTGTTTCCTATGGGTTTCAAGGGACAAGCAAGAAAATCGACATTCCAAATGGTAGAGTGGGTGTAATTATTGGTAAAGGTGGTGAGACCATCAAGTACCTTCAGCTCCAGTCTGGGGCAAAAATACAAGTTACTCGTGACATGGATGCAGATCCCAATTCTGCTACCCGGACGGTTGATCTAATGGGTACTCCTGATCAAATTGCTAAGGCCGAGCAGTTGATTAATGATGTTCTTTCCGAGGTTTGTTTTAGTTTTCAAACTGCATGTGTACTCTTGATCAAATTGCTTTGTCAACTACTGTGTGTTGTCTCACCTCTTAAAAACATTGACATGCCGTGTAGCAATGGATTTGTTTGGAAAGGCCTTACCAATTTTTCCACTGCCAACATAATATTATTGGCAATATTTTCTTTATAAATTGCATACAAAATCTGATTGAATTGACGTTGTTGGAAGGGTTAGGCATTTAACTTGGCTTGATAATGTGCTTGTCTAATAAATTTAACATTTGATTCAGGCTGAATCTGGAGGTTCTGGCATAGTATCTCAAAGATTGACTGGTTCATCGGGATCTGAGCAGTTTGTTATGAAAATTCCCAATAATAAGGTTCTTTAAATATTTTTTTGGAATTTACCAAGTTCTGTCATCTACTTTGAGAACATTTAAATCTTTTTTTTAATTTATTTATTGGTGATACTTATGATTGTTATGATTTTAATTTTCTAGGTTGGCTTGGTTATTGGTAAAGGTGGTGAAACAATCAAAAGTATGCAAGCCAGGACTGGAGCTCGTATTCAGGTTTGTTTACATATATGTATATACATTTTTCATGTGTCTTGGAAGTCCTCCCCTTTCCTACCATTTTCTTTAATTTCAATTTTGCAACTTGTTTTCACTTTTTGTTTACGTAACATTAATTATTGTATTTAATTTGGATAACATGGGATTTTGTATTCTTCATTTTCACAGGTGATACCTTTGCACTTACCCCCTGGGGATACATCTACAGAAAGAACCTTACAGATTGATGGTTCAAGCGAACAGATTGAGTCAGCAAAACAGTTGGTTAATGAAGTTACCAGTGAGGTGCGTTTGCAGATTTTGGTTCCATTAAGATTGTTATGCCCTTTTGTAGTAGGAACTAATGCATAGTTGAAATCTAATTCCATGAATTTTTTGTGTGAATTTTTTATTTTTGAGGTGTTTGTAATGATTTTTCCTGATTGTACTTGGTTATTTTTGTAATTGTTGATGCAAGGTTGCCATACTATTCTAGAACTCCTTTAGCTCTTTCTATGAATTCTTTTAGTATTTAGTGTTATACCTCAACACCAAGGTGAGCATTAAGGACTCAGTGTTGATGGACGTTGAATTGTTTCATTGCTTTTACATGTTTATTCAGCTTCTTACTGTGATATAGCTGGGATTTGGTATTCATTTACTTCATATAGATTACACTGTTTTGTGAAGATTATGAAATGTTCTGTTTTCTGATTGTGTTCCTTATTATAAATTGAAATGTTTTCTTTTTAAGACACATTCTTGTTACAGTCACGTTTTTTATTTGTTATAATTTTGTACACTAATCATTCTTCAATACAATGCTTCTGTTTTTCTTTCTGGAAGGAAATAGTTGATACTTCTCTCATTGTCTCTATGTTGTCTTGTTGGATAGCTGGAGTCAACAAGAATTTGGTTTCTTCGTCGTTCATTGAAAATACTTCTTTTCCCTTCTAAAGTTTACCCTGCTTAATGAACTGGAGCTTCTATGAAATTTGTCAAACACTGTTATATACTCAGCATTTGGATATGTTGTTCATTTGACTATAATGAATATGTTTCTGTGTTGCAAATCTGAAAAATCATTTTATTGCCGATGCTGTTAGTATGCCCGAGCAGTTTTACTATTTTAATTGTCTTAAACAGTAACTATTGAAGAGCCGTAAGGAGGTTTGTTCCCTCACTATGCTTACTTTCAACTTTGGGGTGAGCTCTGTTTGGATTGTATGTCGACCGTATCAATGCTGGTTTGTAGTTACACTCAAGGAATTAGAAGCATTGGAATATACAAACCTGTTATTACTTTTGGATCTCTTATAGCTTGAGATAGCTTTTAGGTCTTTTATCCATAATCGATCTGGATTTCTTATTATGTCTGCAATTGTTTATTCTACATATCCATTGATGCAGATATGGAGGATCTAAGGTTCCTGGGGTTTGGAAATAGGTGAAGTTATTTTTACAGATGGAACACCTAGTTAGTTTTTGAAGAGTGACTGGTACTTGAAGGGTTCCCATTGGTGATATGTTTGCTCCGTTGGATATTCAGTTTATCTGTCAATATTACTCTTATTAGGTTGTTAAGGTTATATGATCTCTCTCCTATTTAAGATGTCTGCAGCCGGTTCGGTATTATTCTTGGTTTTATATCTTGATTGTGGTATCTGAAAGGTTCCCATTGGTGATATGCTGGCTCCTTTGGATATTCAGTTTATCAGTCAATATTACTCTTATTAGGTTGTTAAGGTTACATGATATCTCTCCTATTTAAGATGTCTGCAACCCATTTGGTATTATTCTTGGTTTTATATCCTGATTGTGGTATCCGTAAGGTTCCCATTGGTGATATGCT

mRNA sequence

AAGAAGAAAACCCATCCTCTTTATCACCTCTCGTTTTCTCTTTCTAGGGTTTTCTCTCTGAAGCTAAACAATGGCTGACGAAGCGCAGTATTCATCTGGTACTGATGTTGCGTCCAATAAGCGCAAGTACGATGACCATCCTCCACCTATGGTTTCCCGCCGGCCGACTGGTTTTTCCGGCCCCATCACTTCCCCCTCCTCCGATACGGCCAATCCTCCGCCTCCCTCCTACAACAACGTCCCGCCCCCTATGGATGAGATCCAGCTTGCTAAGCAGCGTGCTCAGGAAATTGCCTCTCGGTTGATTATCTCCAGTGGTGGCGTCGGGGCCGGCGCTGGACCTGGCGTTGGGGCTGATGCCAAGCGCCCAAGGGTTGAGAATGGCGGCGGGTTTGATTCATACGAAAAGGGTTTTAGTTCTGGCTCAGACTTAAAGTCTCACTTGTCTAATTCAGCTCCTTCAGCAACACCTGTTTCCTATGGGTTTCAAGGGACAAGCAAGAAAATCGACATTCCAAATGGTAGAGTGGGTGTAATTATTGGTAAAGGTGGTGAGACCATCAAGTACCTTCAGCTCCAGTCTGGGGCAAAAATACAAGTTACTCGTGACATGGATGCAGATCCCAATTCTGCTACCCGGACGGTTGATCTAATGGGTACTCCTGATCAAATTGCTAAGGCCGAGCAGTTGATTAATGATGTTCTTTCCGAGGCTGAATCTGGAGGTTCTGGCATAGTATCTCAAAGATTGACTGGTTCATCGGGATCTGAGCAGTTTGTTATGAAAATTCCCAATAATAAGGTTGGCTTGGTTATTGGTAAAGGTGGTGAAACAATCAAAAGTATGCAAGCCAGGACTGGAGCTCGTATTCAGGTGATACCTTTGCACTTACCCCCTGGGGATACATCTACAGAAAGAACCTTACAGATTGATGGTTCAAGCGAACAGATTGAGTCAGCAAAACAGTTGGTTAATGAAGTTACCAGTGAGGTGCGTTTGCAGATTTTGGTTCCATTAAGATTGTTATGCCCTTTTGTAGTAGGAACTAATGCATAGTTGAAATCTAATTCCATGAATTTTTTGTGTGAATTTTTTATTTTTGAGGTGTTTGTAATGATTTTTCCTGATTGTACTTGGTTATTTTTGTAATTGTTGATGCAAGGTTGCCATACTATTCTAGAACTCCTTTAGCTCTTTCTATGAATTCTTTTAGTATTTAGTGTTATACCTCAACACCAAGGTGAGCATTAAGGACTCAGTGTTGATGGACGTTGAATTGTTTCATTGCTTTTACATGTTTATTCAGCTTCTTACTGTGATATAGCTGGGATTTGGTATTCATTTACTTCATATAGATTACACTGTTTTGTGAAGATTATGAAATGTTCTGTTTTCTGATTGTGTTCCTTATTATAAATTGAAATGTTTTCTTTTTAAGACACATTCTTGTTACAGTCACGTTTTTTATTTGTTATAATTTTGTACACTAATCATTCTTCAATACAATGCTTCTGTTTTTCTTTCTGGAAGGAAATAGTTGATACTTCTCTCATTGTCTCTATGTTGTCTTGTTGGATAGCTGGAGTCAACAAGAATTTGGTTTCTTCGTCGTTCATTGAAAATACTTCTTTTCCCTTCTAAAGTTTACCCTGCTTAATGAACTGGAGCTTCTATGAAATTTGTCAAACACTGTTATATACTCAGCATTTGGATATGTTGTTCATTTGACTATAATGAATATGTTTCTGTGTTGCAAATCTGAAAAATCATTTTATTGCCGATGCTGTTAGTATGCCCGAGCAGTTTTACTATTTTAATTGTCTTAAACAGTAACTATTGAAGAGCCGTAAGGAGGTTTGTTCCCTCACTATGCTTACTTTCAACTTTGGGGTGAGCTCTGTTTGGATTGTATGTCGACCGTATCAATGCTGGTTTGTAGTTACACTCAAGGAATTAGAAGCATTGGAATATACAAACCTGTTATTACTTTTGGATCTCTTATAGCTTGAGATAGCTTTTAGGTCTTTTATCCATAATCGATCTGGATTTCTTATTATGTCTGCAATTGTTTATTCTACATATCCATTGATGCAGATATGGAGGATCTAAGGTTCCTGGGGTTTGGAAATAGGTGAAGTTATTTTTACAGATGGAACACCTAGTTAGTTTTTGAAGAGTGACTGGTACTTGAAGGGTTCCCATTGGTGATATGTTTGCTCCGTTGGATATTCAGTTTATCTGTCAATATTACTCTTATTAGGTTGTTAAGGTTATATGATCTCTCTCCTATTTAAGATGTCTGCAGCCGGTTCGGTATTATTCTTGGTTTTATATCTTGATTGTGGTATCTGAAAGGTTCCCATTGGTGATATGCTGGCTCCTTTGGATATTCAGTTTATCAGTCAATATTACTCTTATTAGGTTGTTAAGGTTACATGATATCTCTCCTATTTAAGATGTCTGCAACCCATTTGGTATTATTCTTGGTTTTATATCCTGATTGTGGTATCCGTAAGGTTCCCATTGGTGATATGCT

Coding sequence (CDS)

ATGGCTGACGAAGCGCAGTATTCATCTGGTACTGATGTTGCGTCCAATAAGCGCAAGTACGATGACCATCCTCCACCTATGGTTTCCCGCCGGCCGACTGGTTTTTCCGGCCCCATCACTTCCCCCTCCTCCGATACGGCCAATCCTCCGCCTCCCTCCTACAACAACGTCCCGCCCCCTATGGATGAGATCCAGCTTGCTAAGCAGCGTGCTCAGGAAATTGCCTCTCGGTTGATTATCTCCAGTGGTGGCGTCGGGGCCGGCGCTGGACCTGGCGTTGGGGCTGATGCCAAGCGCCCAAGGGTTGAGAATGGCGGCGGGTTTGATTCATACGAAAAGGGTTTTAGTTCTGGCTCAGACTTAAAGTCTCACTTGTCTAATTCAGCTCCTTCAGCAACACCTGTTTCCTATGGGTTTCAAGGGACAAGCAAGAAAATCGACATTCCAAATGGTAGAGTGGGTGTAATTATTGGTAAAGGTGGTGAGACCATCAAGTACCTTCAGCTCCAGTCTGGGGCAAAAATACAAGTTACTCGTGACATGGATGCAGATCCCAATTCTGCTACCCGGACGGTTGATCTAATGGGTACTCCTGATCAAATTGCTAAGGCCGAGCAGTTGATTAATGATGTTCTTTCCGAGGCTGAATCTGGAGGTTCTGGCATAGTATCTCAAAGATTGACTGGTTCATCGGGATCTGAGCAGTTTGTTATGAAAATTCCCAATAATAAGGTTGGCTTGGTTATTGGTAAAGGTGGTGAAACAATCAAAAGTATGCAAGCCAGGACTGGAGCTCGTATTCAGGTGATACCTTTGCACTTACCCCCTGGGGATACATCTACAGAAAGAACCTTACAGATTGATGGTTCAAGCGAACAGATTGAGTCAGCAAAACAGTTGGTTAATGAAGTTACCAGTGAGGTGCGTTTGCAGATTTTGGTTCCATTAAGATTGTTATGCCCTTTTGTAGTAGGAACTAATGCATAG

Protein sequence

MADEAQYSSGTDVASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDTANPPPPSYNNVPPPMDEIQLAKQRAQEIASRLIISSGGVGAGAGPGVGADAKRPRVENGGGFDSYEKGFSSGSDLKSHLSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKIPNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQLVNEVTSEVRLQILVPLRLLCPFVVGTNA
Homology
[Close]
BLAST of Carg23968-RA vs. NCBI nr
Match: XP_022951946.1 (far upstream element-binding protein 1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 533.9 bits (1374), Expect = 3.9e-148
Identity = 307/311 (98.71%), Postives = 310/311 (99.68%), Query Frame = 0 

Query: 1   MADEAQYSSGTDVASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDTANXXXXXXXXXXXX 60
           MADEAQYSSGTDVASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDTANXXXXXXXXXXXX
Sbjct: 1   MADEAQYSSGTDVASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDTANXXXXXXXXXXXX 60

Query: 61  MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENGGGFDSYEKGFSSGSD 120
           MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENGGGFDSYEKGFSSGSD
Sbjct: 61  MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENGGGFDSYEKGFSSGSD 120

Query: 121 LKSHLSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD 180
           LKSH+SNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD
Sbjct: 121 LKSHMSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD 180

Query: 181 MDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKI 240
           MDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKI
Sbjct: 181 MDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKI 240

Query: 241 PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL 300
           PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL
Sbjct: 241 PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL 300

Query: 301 VNEVTSEVRLQ 312
           VNEVTSE R++
Sbjct: 301 VNEVTSENRVR 311

[Close]
BLAST of Carg23968-RA vs. NCBI nr
Match: XP_022951945.1 (far upstream element-binding protein 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 533.9 bits (1374), Expect = 3.9e-148
Identity = 307/311 (98.71%), Postives = 310/311 (99.68%), Query Frame = 0 

Query: 1   MADEAQYSSGTDVASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDTANXXXXXXXXXXXX 60
           MADEAQYSSGTDVASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDTANXXXXXXXXXXXX
Sbjct: 1   MADEAQYSSGTDVASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDTANXXXXXXXXXXXX 60

Query: 61  MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENGGGFDSYEKGFSSGSD 120
           MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENGGGFDSYEKGFSSGSD
Sbjct: 61  MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENGGGFDSYEKGFSSGSD 120

Query: 121 LKSHLSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD 180
           LKSH+SNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD
Sbjct: 121 LKSHMSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD 180

Query: 181 MDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKI 240
           MDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKI
Sbjct: 181 MDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKI 240

Query: 241 PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL 300
           PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL
Sbjct: 241 PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL 300

Query: 301 VNEVTSEVRLQ 312
           VNEVTSE R++
Sbjct: 301 VNEVTSENRVR 311

[Close]
BLAST of Carg23968-RA vs. NCBI nr
Match: XP_023002827.1 (far upstream element-binding protein 1-like [Cucurbita maxima])

HSP 1 Score: 530.8 bits (1366), Expect = 3.3e-147
Identity = 304/311 (97.75%), Postives = 308/311 (99.04%), Query Frame = 0 

Query: 1   MADEAQYSSGTDVASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDTANXXXXXXXXXXXX 60
           MADEAQYSSGTD ASNKRKYDDHPPPMVSRRPTGFSGPITSPSSD+ANXXXXXXXXXXX 
Sbjct: 1   MADEAQYSSGTDAASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDSANXXXXXXXXXXXP 60

Query: 61  MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENGGGFDSYEKGFSSGSD 120
           MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENGGGFDSYEKGFSSGSD
Sbjct: 61  MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENGGGFDSYEKGFSSGSD 120

Query: 121 LKSHLSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD 180
           LKSH+SNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD
Sbjct: 121 LKSHMSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD 180

Query: 181 MDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKI 240
           MDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKI
Sbjct: 181 MDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKI 240

Query: 241 PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL 300
           PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL
Sbjct: 241 PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL 300

Query: 301 VNEVTSEVRLQ 312
           VNEVTSE R++
Sbjct: 301 VNEVTSENRVR 311

[Close]
BLAST of Carg23968-RA vs. NCBI nr
Match: XP_023536823.1 (far upstream element-binding protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 520.8 bits (1340), Expect = 3.4e-144
Identity = 301/311 (96.78%), Postives = 304/311 (97.75%), Query Frame = 0 

Query: 1   MADEAQYSSGTDVASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDTANXXXXXXXXXXXX 60
           MADEAQYSSGTD ASNKRKYDDHPPPMVSRRPTGFSGPITSPS     XXXXXXXXXXXX
Sbjct: 1   MADEAQYSSGTDAASNKRKYDDHPPPMVSRRPTGFSGPITSPSXXXXXXXXXXXXXXXXX 60

Query: 61  MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENGGGFDSYEKGFSSGSD 120
           MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENGGGFDSYEKGFSSGSD
Sbjct: 61  MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENGGGFDSYEKGFSSGSD 120

Query: 121 LKSHLSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD 180
           LKSH+SNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD
Sbjct: 121 LKSHMSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD 180

Query: 181 MDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKI 240
           MDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKI
Sbjct: 181 MDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKI 240

Query: 241 PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL 300
           PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL
Sbjct: 241 PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL 300

Query: 301 VNEVTSEVRLQ 312
           VNEVTSE R++
Sbjct: 301 VNEVTSENRVR 311

[Close]
BLAST of Carg23968-RA vs. NCBI nr
Match: XP_022997505.1 (far upstream element-binding protein 1 [Cucurbita maxima])

HSP 1 Score: 497.7 bits (1280), Expect = 3.1e-137
Identity = 270/311 (86.82%), Postives = 285/311 (91.64%), Query Frame = 0 

Query: 1   MADEAQYSSGTDVASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDTANXXXXXXXXXXXX 60
           MADEAQYSSGTD+ SNKRKY+D PPPMV+RRPTGFSGPITSPSSD A+            
Sbjct: 1   MADEAQYSSGTDITSNKRKYEDQPPPMVTRRPTGFSGPITSPSSDLAHPPPPSYNNVPPP 60

Query: 61  MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENGGGFDSYEKGFSSGSD 120
           MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXX    RPRVENG GFDSY+KGFSSG+D
Sbjct: 61  MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXADVKRPRVENGSGFDSYDKGFSSGAD 120

Query: 121 LKSHLSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD 180
           LK H+S+SAPS+ PVSYGFQGTSKKI+IPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD
Sbjct: 121 LKPHMSSSAPSSIPVSYGFQGTSKKIEIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD 180

Query: 181 MDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKI 240
           MDADPNSATR V+LMGTPDQIAKAEQL+NDVLSEAESGGSGIVS+RLTG SGSEQFVMKI
Sbjct: 181 MDADPNSATRMVELMGTPDQIAKAEQLMNDVLSEAESGGSGIVSRRLTGPSGSEQFVMKI 240

Query: 241 PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL 300
           PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL
Sbjct: 241 PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL 300

Query: 301 VNEVTSEVRLQ 312
           VNEV SE R++
Sbjct: 301 VNEVISENRVR 311

[Close]
BLAST of Carg23968-RA vs. TAIR10
Match: AT2G25970.1 (KH domain-containing protein)

HSP 1 Score: 341.3 bits (874), Expect = 6.7e-94
Identity = 202/317 (63.72%), Postives = 228/317 (71.92%), Query Frame = 0 

Query: 1   MADEAQYSSGTDVASNKRKYDD-HPPPMVSRRPTGF-SGPITSPSSD---TANXXXXXXX 60
           MADE+QYSS  D  SNKRKY++   PP  +RRPTGF SGPI S S D             
Sbjct: 1   MADESQYSS--DTYSNKRKYEEPTAPPPSTRRPTGFSSGPIPSASVDPTAPTGLPPSSYN 60

Query: 61  XXXXXMDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENGGGFD-SYEKG 120
                MDEIQ+AKQ+AQEIA+RL+ S+                RPRV+NG  +D    KG
Sbjct: 61  SVPPPMDEIQIAKQKAQEIAARLLNSADA-------------KRPRVDNGASYDYGDNKG 120

Query: 121 FSSGSDLKSHLSNSAPSATPVSYG-FQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGA 180
           FSS       +S + PS+ PVSYG FQGT+KKIDIPN RVGVIIGKGGETIKYLQLQSGA
Sbjct: 121 FSSYPSEGKQMSGTVPSSIPVSYGSFQGTTKKIDIPNMRVGVIIGKGGETIKYLQLQSGA 180

Query: 181 KIQVTRDMDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLT----G 240
           KIQVTRDMDADPN ATRTVDL GTPDQI+KAEQLI DVL EAE+G +            G
Sbjct: 181 KIQVTRDMDADPNCATRTVDLTGTPDQISKAEQLITDVLQEAEAGNTAXXXXXXXXXXGG 240

Query: 241 SSGSEQFVMKIPNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDG 300
            +G++QFVMKIPNNKVGL+IGKGGETIKSMQA+TGARIQVIPLHLPPGD + ERTLQIDG
Sbjct: 241 QAGADQFVMKIPNNKVGLIIGKGGETIKSMQAKTGARIQVIPLHLPPGDPTPERTLQIDG 300

Query: 301 SSEQIESAKQLVNEVTS 307
            +EQIE AKQLVNE+ S
Sbjct: 301 ITEQIEHAKQLVNEIIS 302

[Close]
BLAST of Carg23968-RA vs. TAIR10
Match: AT4G10070.1 (KH domain-containing protein)

HSP 1 Score: 163.7 bits (413), Expect = 1.9e-40
Identity = 86/170 (50.59%), Postives = 125/170 (73.53%), Query Frame = 0 

Query: 142 TSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSATRTVDLMGTPDQI 201
           T+++ID+P+ +VGV+IGKGGETI+YLQ  SGAKIQ+ RD +ADP+SA R V+++G+   I
Sbjct: 176 TTRRIDVPSSKVGVLIGKGGETIRYLQFNSGAKIQILRDSEADPSSALRPVEIIGSVACI 235

Query: 202 AKAEQLINDVLSEAESGGSGIVSQRLTGSSGS----EQFVMKIPNNKVGLVIGKGGETIK 261
             AE+LI+ V++EAE+GGS  +  R   S+ +    EQ  +K+PN+KVGL+IG+GGETIK
Sbjct: 236 ESAEKLISAVIAEAEAGGSPALVARGHPSTHAIGIPEQIEIKVPNDKVGLIIGRGGETIK 295

Query: 262 SMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQLVNEVTSE 308
           +MQ R+GAR Q+IP H   GD   ERT++I G   QI+ A  ++ +V ++
Sbjct: 296 NMQTRSGARTQLIPQH-AEGDGLKERTVRISGDKMQIDIATDMIKDVMNQ 344

[Close]
BLAST of Carg23968-RA vs. TAIR10
Match: AT1G33680.1 (KH domain-containing protein)

HSP 1 Score: 158.7 bits (400), Expect = 6.2e-39
Identity = 81/163 (49.69%), Postives = 120/163 (73.62%), Query Frame = 0 

Query: 142 TSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSATRTVDLMGTPDQI 201
           T+++ID+P+ +VG +IGKGGE ++YLQ+ SGAKIQ+ RD +ADP+SA R V+++GT   I
Sbjct: 232 TTRRIDVPSSKVGTLIGKGGEMVRYLQVNSGAKIQIRRDAEADPSSALRPVEIIGTVSCI 291

Query: 202 AKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKIPNNKVGLVIGKGGETIKSMQA 261
            KAE+LIN V++E E+GG   ++ R       EQ  +K+P++KVG++IG+GGETIK+MQ 
Sbjct: 292 EKAEKLINAVIAEVEAGGVPALAAR----GVPEQMEIKVPSDKVGVIIGRGGETIKNMQT 351

Query: 262 RTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQLVNEV 305
           ++ ARIQ+IP +   GD S ERT++I G   QI+ A  L+ +V
Sbjct: 352 KSRARIQLIPQN--EGDASKERTVRISGDKRQIDIATALIKDV 388

[Close]
BLAST of Carg23968-RA vs. TAIR10
Match: AT5G04430.2 (binding to TOMV RNA 1L (long form))

HSP 1 Score: 70.1 bits (170), Expect = 2.9e-12
Identity = 43/126 (34.13%), Postives = 67/126 (53.17%), Query Frame = 0 

Query: 148 IPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSATRTVDLMGTPDQIAKAEQL 207
           + N   G +IGKGG TI   Q +SGA+IQ++R+ +  P +  R + + G+  ++    +L
Sbjct: 41  VSNAAAGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGTTDRIIMISGSIKEVVNGLEL 100

Query: 208 INDVL-SEAESGGSGIVSQRLTGSSGSEQFVMKIPNNKVGLVIGKGGETIKSMQARTGAR 267
           I D L SE  +     V  R        +  + +PN+  G +IGKGG TIKS    + A 
Sbjct: 101 ILDKLHSELHAEDGNEVEPR-------RRIRLVVPNSSCGGIIGKGGATIKSFIEESKAG 159

Query: 268 IQVIPL 273
           I++ PL
Sbjct: 161 IKISPL 159

[Close]
BLAST of Carg23968-RA vs. TAIR10
Match: AT1G14170.3 (RNA-binding KH domain-containing protein)

HSP 1 Score: 53.5 bits (127), Expect = 2.8e-07
Identity = 37/140 (26.43%), Postives = 68/140 (48.57%), Query Frame = 0 

Query: 149 PNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSATRTVDLMGTPDQI------- 208
           P  + G IIGKGGE  K ++ ++ + +++    +A P    R V +  T +++       
Sbjct: 51  PVKKTGSIIGKGGEIAKQIRSETKSNMRIN---EALPGCEERVVTMYSTNEELNHFGDDG 110

Query: 209 ------AKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKIPNNKVGLVIGKGGET 268
                   A   ++D++        G       G   +    M +P++++G VIGKGG+ 
Sbjct: 111 ELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVIGKGGQV 170

Query: 269 IKSMQARTGARIQVIPLHLP 276
           I++++  T A+I+VI  HLP
Sbjct: 171 IQNLRNDTNAQIRVIKDHLP 187

[Close]
BLAST of Carg23968-RA vs. Swiss-Prot
Match: sp|Q8UVD9|FUBP2_CHICK (Far upstream element-binding protein 2 OS=Gallus gallus OX=9031 GN=KHSRP PE=1 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.5e-21
Identity = 59/160 (36.88%), Postives = 97/160 (60.62%), Query Frame = 0 

Query: 148 IPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSATRTVDLMGTPDQIAKAEQL 207
           +P+G VG+IIG+GGE I  +Q  SG K+Q++ D    P    R+V L G+P+ + KA+ +
Sbjct: 215 VPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPE---RSVSLTGSPEAVQKAKLM 274

Query: 208 INDVLSEAESGGSGIVSQRLTGSSGSEQFVMKIPNNKVGLVIGKGGETIKSMQARTGARI 267
           ++D++S    G  G       G +G+ Q +M IP  K GLVIGKGGETIK +Q R G  +
Sbjct: 275 LDDIVSRGRGGPPGQFHDYANGQNGTVQEIM-IPAGKAGLVIGKGGETIKQLQERAG--V 334

Query: 268 QVIPLHLPPGDTSTERTLQIDGSSEQIESAKQLVNEVTSE 308
           ++I +     +T+ ++ L+I G   +++ A ++V ++  E
Sbjct: 335 KMIFIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRE 368

[Close]
BLAST of Carg23968-RA vs. Swiss-Prot
Match: sp|Q3U0V1|FUBP2_MOUSE (Far upstream element-binding protein 2 OS=Mus musculus OX=10090 GN=Khsrp PE=1 SV=2)

HSP 1 Score: 105.1 bits (261), Expect = 1.5e-21
Identity = 72/241 (29.88%), Postives = 122/241 (50.62%), Query Frame = 0 

Query: 67  AKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENGGGFDSYEKGFSSGSDLKSHLS 126
           A QRA++IA+++   +                + ++E+G   DS +K  S G  + S L 
Sbjct: 78  AVQRARQIAAKIGGDAATTVNNNTPDFGFGGQKRQLEDGDQPDS-KKLASQGDSIGSQLG 137

Query: 127 NSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPN 186
              P            +++  +P+G VG+IIG+GGE I  +Q  SG K+Q++ D    P 
Sbjct: 138 PIHPPPR------TSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPE 197

Query: 187 SATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKIPNNKVG 246
              R+V L G P+ + KA+ +++D++S    G  G       G        + IP  K G
Sbjct: 198 ---RSVSLTGAPESVQKAKMMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAG 257

Query: 247 LVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQLVNEVTS 306
           LVIGKGGETIK +Q R G  +++I +     +T+ ++ L+I G   +++ A ++V ++  
Sbjct: 258 LVIGKGGETIKQLQERAG--VKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILR 306

Query: 307 E 308
           E
Sbjct: 318 E 306

[Close]
BLAST of Carg23968-RA vs. Swiss-Prot
Match: sp|Q99PF5|FUBP2_RAT (Far upstream element-binding protein 2 OS=Rattus norvegicus OX=10116 GN=Khsrp PE=1 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.5e-21
Identity = 72/241 (29.88%), Postives = 122/241 (50.62%), Query Frame = 0 

Query: 67  AKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENGGGFDSYEKGFSSGSDLKSHLS 126
           A QRA++IA+++   +                + ++E+G   DS +K  S G  + S L 
Sbjct: 78  AVQRARQIAAKIGGDAATTVNNNTPDFGFGGQKRQLEDGDQPDS-KKLASQGDSIGSQLG 137

Query: 127 NSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPN 186
              P            +++  +P+G VG+IIG+GGE I  +Q  SG K+Q++ D    P 
Sbjct: 138 PIHPPPR------TSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPE 197

Query: 187 SATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKIPNNKVG 246
              R+V L G P+ + KA+ +++D++S    G  G       G        + IP  K G
Sbjct: 198 ---RSVSLTGAPESVQKAKMMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAG 257

Query: 247 LVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQLVNEVTS 306
           LVIGKGGETIK +Q R G  +++I +     +T+ ++ L+I G   +++ A ++V ++  
Sbjct: 258 LVIGKGGETIKQLQERAG--VKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILR 306

Query: 307 E 308
           E
Sbjct: 318 E 306

[Close]
BLAST of Carg23968-RA vs. Swiss-Prot
Match: sp|Q92945|FUBP2_HUMAN (Far upstream element-binding protein 2 OS=Homo sapiens OX=9606 GN=KHSRP PE=1 SV=4)

HSP 1 Score: 104.4 bits (259), Expect = 2.5e-21
Identity = 71/241 (29.46%), Postives = 122/241 (50.62%), Query Frame = 0 

Query: 67  AKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENGGGFDSYEKGFSSGSDLKSHLS 126
           A QRA++IA+++   +                + ++E+G   +S +K  S G  + S L 
Sbjct: 77  AVQRARQIAAKIGGDAATTVNNSTPDFGFGGQKRQLEDGDQPES-KKLASQGDSISSQLG 136

Query: 127 NSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPN 186
              P            +++  +P+G VG+IIG+GGE I  +Q  SG K+Q++ D    P 
Sbjct: 137 PIHPPPR------TSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPE 196

Query: 187 SATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKIPNNKVG 246
              R+V L G P+ + KA+ +++D++S    G  G       G        + IP  K G
Sbjct: 197 ---RSVSLTGAPESVQKAKMMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAG 256

Query: 247 LVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQLVNEVTS 306
           LVIGKGGETIK +Q R G  +++I +     +T+ ++ L+I G   +++ A ++V ++  
Sbjct: 257 LVIGKGGETIKQLQERAG--VKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILR 305

Query: 307 E 308
           E
Sbjct: 317 E 305

[Close]
BLAST of Carg23968-RA vs. Swiss-Prot
Match: sp|Q96AE4|FUBP1_HUMAN (Far upstream element-binding protein 1 OS=Homo sapiens OX=9606 GN=FUBP1 PE=1 SV=3)

HSP 1 Score: 96.3 bits (238), Expect = 6.8e-19
Identity = 58/162 (35.80%), Postives = 95/162 (58.64%), Query Frame = 0 

Query: 143 SKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSATRTVDLMGTPDQIA 202
           +++  +P+G VG IIG+GGE I  +Q +SG KIQ+  D    P    R+  L GTP+ + 
Sbjct: 102 TEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPE---RSCMLTGTPESVQ 161

Query: 203 KAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKIPNNKVGLVIGKGGETIKSMQAR 262
            A++L++ ++   E G          G   + Q +M IP +K GLVIGKGGETIK +Q R
Sbjct: 162 SAKRLLDQIV---EKGRPAPGFHHGDGPGNAVQEIM-IPASKAGLVIGKGGETIKQLQER 221

Query: 263 TGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQLVNEV 305
            G  ++++ +   P +T  ++ L+I G   +++ AK++V E+
Sbjct: 222 AG--VKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLEL 254

[Close]
BLAST of Carg23968-RA vs. TrEMBL
Match: tr|A0A0A0LKT6|A0A0A0LKT6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351790 PE=4 SV=1)

HSP 1 Score: 482.3 bits (1240), Expect = 8.9e-133
Identity = 268/309 (86.73%), Postives = 277/309 (89.64%), Query Frame = 0 

Query: 1   MADEAQYSSGTDVASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDTANXXXXXXXXXXXX 60
           MADEAQYSS TD  SNKRKYDD PPP   RRPTGFSGPITSPSSD+A             
Sbjct: 1   MADEAQYSSATDTPSNKRKYDDQPPP---RRPTGFSGPITSPSSDSA----PSYNNVPPP 60

Query: 61  MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENGGGFDSYEKGFSSGSD 120
           MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXX    RPRVENGGG+DSY+KGFSSG D
Sbjct: 61  MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXADVKRPRVENGGGYDSYDKGFSSGPD 120

Query: 121 LKSHLSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD 180
           LK H+SNSAPSA P+SYGFQG+SKKI+IPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD
Sbjct: 121 LKPHMSNSAPSAIPISYGFQGSSKKIEIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD 180

Query: 181 MDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKI 240
           MDADPNS TR V+LMGTPDQIAKAEQLINDVLSEAESGGSGIVS+RLTG SGSEQFVMKI
Sbjct: 181 MDADPNSTTRMVELMGTPDQIAKAEQLINDVLSEAESGGSGIVSRRLTGPSGSEQFVMKI 240

Query: 241 PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL 300
           PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL
Sbjct: 241 PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL 300

Query: 301 VNEVTSEVR 310
           VNEV SE R
Sbjct: 301 VNEVISENR 302

[Close]
BLAST of Carg23968-RA vs. TrEMBL
Match: tr|A0A1S3B9Y5|A0A1S3B9Y5_CUCME (far upstream element-binding protein 1 OS=Cucumis melo OX=3656 GN=LOC103487791 PE=4 SV=1)

HSP 1 Score: 480.3 bits (1235), Expect = 3.4e-132
Identity = 267/309 (86.41%), Postives = 276/309 (89.32%), Query Frame = 0 

Query: 1   MADEAQYSSGTDVASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDTANXXXXXXXXXXXX 60
           MADEAQYSS  D  SNKRKYDD PPP   RRPTGFSGPITSPSSD+A             
Sbjct: 1   MADEAQYSSANDTPSNKRKYDDQPPP---RRPTGFSGPITSPSSDSA----PSYNNVPPP 60

Query: 61  MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENGGGFDSYEKGFSSGSD 120
           MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXX    RPRVENGGG+DSY+KGFSSG D
Sbjct: 61  MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXADVKRPRVENGGGYDSYDKGFSSGPD 120

Query: 121 LKSHLSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD 180
           LK H+SNSAPSA P+SYGFQG+SKKI+IPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD
Sbjct: 121 LKPHMSNSAPSAIPISYGFQGSSKKIEIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRD 180

Query: 181 MDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMKI 240
           MDADPNS TR V+LMGTPDQIAKAEQLINDVLSEAESGGSGIVS+RLTG SGSEQFVMKI
Sbjct: 181 MDADPNSTTRMVELMGTPDQIAKAEQLINDVLSEAESGGSGIVSRRLTGPSGSEQFVMKI 240

Query: 241 PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL 300
           PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL
Sbjct: 241 PNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQL 300

Query: 301 VNEVTSEVR 310
           VNEV SE R
Sbjct: 301 VNEVISENR 302

[Close]
BLAST of Carg23968-RA vs. TrEMBL
Match: tr|F6H392|F6H392_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_04s0008g00820 PE=4 SV=1)

HSP 1 Score: 407.9 bits (1047), Expect = 2.1e-110
Identity = 229/317 (72.24%), Postives = 255/317 (80.44%), Query Frame = 0 

Query: 1   MADEAQYSSGTDVASNKRKYDDHPPPM--VSRRPTGFSGPITSPSSDTANXXXXXXXXXX 60
           MA+E QYSSGTD A+NKRKY+D   P    +RRPTGFS PI++PS D+++          
Sbjct: 1   MAEEVQYSSGTD-ATNKRKYEDQTTPSQPSTRRPTGFSAPISTPSPDSSH-APPSYNSVP 60

Query: 61  XXMDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENG---GGFDSYEKGF 120
              DEIQLAKQRAQEIA+RL  ++                RPRVENG   GGFDS +KGF
Sbjct: 61  PPADEIQLAKQRAQEIAARLFSNASNT----------EAKRPRVENGAGAGGFDSGDKGF 120

Query: 121 SSG-SDLKSHLSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAK 180
           SS  SD+      S PSA PVSYG+QGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAK
Sbjct: 121 SSAPSDVGQKPMISTPSAIPVSYGYQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAK 180

Query: 181 IQVTRDMDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSE 240
           IQVTRDMDADPNS TR V+LMGTPDQIAKAEQLINDVLSEAE+GGSGIVS+RLTG +GSE
Sbjct: 181 IQVTRDMDADPNSPTRLVELMGTPDQIAKAEQLINDVLSEAEAGGSGIVSRRLTGQAGSE 240

Query: 241 QFVMKIPNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQI 300
           QFVMK+PNNKVGL+IGKGGETIK+MQARTGARIQVIPLHLPPGDTS ERT+QIDG+SEQI
Sbjct: 241 QFVMKVPNNKVGLIIGKGGETIKNMQARTGARIQVIPLHLPPGDTSMERTVQIDGTSEQI 300

Query: 301 ESAKQLVNEVTSEVRLQ 312
           ESAKQLVNEV SE R++
Sbjct: 301 ESAKQLVNEVISENRIR 305

[Close]
BLAST of Carg23968-RA vs. TrEMBL
Match: tr|W9R3G4|W9R3G4_9ROSA (Far upstream element-binding protein 2 OS=Morus notabilis OX=981085 GN=L484_019523 PE=4 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 6.4e-107
Identity = 222/312 (71.15%), Postives = 247/312 (79.17%), Query Frame = 0 

Query: 1   MADEAQYSSGTDVASNKRKYDDHPPPMVSRRPTGFSGPITSPSSDTANXXXXXXXXXXXX 60
           MADE QYSSGTD  SNKRKY++   P  SRRPTGFS PI+S S D+A             
Sbjct: 1   MADEPQYSSGTDTGSNKRKYEEQTTP-PSRRPTGFSAPISSTSPDSA---PPSYNSVPPP 60

Query: 61  MDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENGGGFDSYEKGFSSG-S 120
           +DEIQLAKQRAQEIA+RL  ++                RPRVENGGGFDS +KGFSS  +
Sbjct: 61  VDEIQLAKQRAQEIAARLFNNASA---GAGVAPPLDAKRPRVENGGGFDSSDKGFSSAPT 120

Query: 121 DLKSHLSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTR 180
           D K H   SAPS+ PVSYGFQG+SKKI+IPNGRVGVIIGKGGETIKYLQLQSGAKIQVTR
Sbjct: 121 DSKPHNPISAPSSIPVSYGFQGSSKKIEIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTR 180

Query: 181 DMDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFVMK 240
           DMDAD NS TR V+LMGTP+QIAKAEQLI DVL+ AESG  G+ ++R+ G SGSEQFVMK
Sbjct: 181 DMDADLNSPTRMVELMGTPEQIAKAEQLITDVLAGAESGSQGMQTRRVGGQSGSEQFVMK 240

Query: 241 IPNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQ 300
           IPNNKVGLVIGKGGETIK+MQARTGARIQVIPLHLPPGD S ERTLQIDG+SEQIE+AKQ
Sbjct: 241 IPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDASIERTLQIDGTSEQIETAKQ 300

Query: 301 LVNEVTSEVRLQ 312
           LVNEV SE R++
Sbjct: 301 LVNEVISENRVR 305

[Close]
BLAST of Carg23968-RA vs. TrEMBL
Match: tr|A0A2I4GL67|A0A2I4GL67_9ROSI (far upstream element-binding protein 1 isoform X2 OS=Juglans regia OX=51240 GN=LOC109008855 PE=4 SV=1)

HSP 1 Score: 388.3 bits (996), Expect = 1.8e-104
Identity = 215/314 (68.47%), Postives = 247/314 (78.66%), Query Frame = 0 

Query: 1   MADEAQYSSGTDVASNKRKYDDHPPPMV-SRRPTGFSGPITSPSSDTANXXXXXXXXXXX 60
           MADE QYSS +D  +NKRKY++   P   +RRPTGFS PI   S D+ +           
Sbjct: 1   MADEVQYSSVSDTNANKRKYEEPTAPSTGTRRPTGFSAPIAPQSPDSGHAPPPSYNNVPP 60

Query: 61  XMDEIQLAKQRAQEIASRLIISSGGVXXXXXXXXXXXXXRPRVENG-GGFDSYEKGFSS- 120
            +D + LAKQRAQE+A+RL  +SG               RP++ENG  GFDS + GFSS 
Sbjct: 61  PVDGLTLAKQRAQEVAARLFNNSGAA----AVAGALDAKRPKIENGASGFDSLDSGFSSV 120

Query: 121 GSDLKSHLSNSAPSATPVSYGFQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQV 180
             D+KSH  +S PSA PVSYGFQ +SKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQV
Sbjct: 121 PPDVKSHALHSVPSA-PVSYGFQSSSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQV 180

Query: 181 TRDMDADPNSATRTVDLMGTPDQIAKAEQLINDVLSEAESGGSGIVSQRLTGSSGSEQFV 240
           TRDMDADPNS TR V+LMGTP+QIAKAEQLIN+VL+EAE+GGSGIVS+R+TG +GS+ FV
Sbjct: 181 TRDMDADPNSPTRMVELMGTPEQIAKAEQLINEVLAEAEAGGSGIVSRRITGQTGSDSFV 240

Query: 241 MKIPNNKVGLVIGKGGETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESA 300
           MK+PNNKVGLVIGKGGETIK+MQARTGARIQVIPLHLPPGD STERTLQIDG+SEQIESA
Sbjct: 241 MKVPNNKVGLVIGKGGETIKNMQARTGARIQVIPLHLPPGDMSTERTLQIDGTSEQIESA 300

Query: 301 KQLVNEVTSEVRLQ 312
           KQLV EV SE R++
Sbjct: 301 KQLVFEVISENRVR 309

The following BLAST results are available for this feature:
BLAST of Carg23968-RA vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022951946.13.9e-14898.71far upstream element-binding protein 1-like isoform X2 [Cucurbita moschata][more]
XP_022951945.13.9e-14898.71far upstream element-binding protein 1-like isoform X1 [Cucurbita moschata][more]
XP_023002827.13.3e-14797.75far upstream element-binding protein 1-like [Cucurbita maxima][more]
XP_023536823.13.4e-14496.78far upstream element-binding protein 1-like [Cucurbita pepo subsp. pepo][more]
XP_022997505.13.1e-13786.82far upstream element-binding protein 1 [Cucurbita maxima][more]
BLAST of Carg23968-RA vs. TAIR10
Match NameE-valueIdentityDescription
AT2G25970.16.7e-9463.72KH domain-containing protein[more]
AT4G10070.11.9e-4050.59KH domain-containing protein[more]
AT1G33680.16.2e-3949.69KH domain-containing protein[more]
AT5G04430.22.9e-1234.13binding to TOMV RNA 1L (long form)[more]
AT1G14170.32.8e-0726.43RNA-binding KH domain-containing protein[more]
BLAST of Carg23968-RA vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8UVD9|FUBP2_CHICK1.5e-2136.88Far upstream element-binding protein 2 OS=Gallus gallus OX=9031 GN=KHSRP PE=1 SV... [more]
sp|Q3U0V1|FUBP2_MOUSE1.5e-2129.88Far upstream element-binding protein 2 OS=Mus musculus OX=10090 GN=Khsrp PE=1 SV... [more]
sp|Q99PF5|FUBP2_RAT1.5e-2129.88Far upstream element-binding protein 2 OS=Rattus norvegicus OX=10116 GN=Khsrp PE... [more]
sp|Q92945|FUBP2_HUMAN2.5e-2129.46Far upstream element-binding protein 2 OS=Homo sapiens OX=9606 GN=KHSRP PE=1 SV=... [more]
sp|Q96AE4|FUBP1_HUMAN6.8e-1935.80Far upstream element-binding protein 1 OS=Homo sapiens OX=9606 GN=FUBP1 PE=1 SV=... [more]
BLAST of Carg23968-RA vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LKT6|A0A0A0LKT6_CUCSA8.9e-13386.73Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351790 PE=4 SV=1[more]
tr|A0A1S3B9Y5|A0A1S3B9Y5_CUCME3.4e-13286.41far upstream element-binding protein 1 OS=Cucumis melo OX=3656 GN=LOC103487791 P... [more]
tr|F6H392|F6H392_VITVI2.1e-11072.24Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_04s0008g00820 PE=4 SV=... [more]
tr|W9R3G4|W9R3G4_9ROSA6.4e-10771.15Far upstream element-binding protein 2 OS=Morus notabilis OX=981085 GN=L484_0195... [more]
tr|A0A2I4GL67|A0A2I4GL67_9ROSI1.8e-10468.47far upstream element-binding protein 1 isoform X2 OS=Juglans regia OX=51240 GN=L... [more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR036612KH_dom_type_1_sf
IPR004088KH_dom_type_1
IPR004087KH_dom
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg23968Carg23968gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg23968-RACarg23968-RA-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg23968-RA.exon.1Carg23968-RA.exon.1exon
Carg23968-RA.exon.2Carg23968-RA.exon.2exon
Carg23968-RA.exon.3Carg23968-RA.exon.3exon
Carg23968-RA.exon.4Carg23968-RA.exon.4exon
Carg23968-RA.exon.5Carg23968-RA.exon.5exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg23968-RA.five_prime_UTR.1Carg23968-RA.five_prime_UTR.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg23968-RA.CDS.1Carg23968-RA.CDS.1CDS
Carg23968-RA.CDS.2Carg23968-RA.CDS.2CDS
Carg23968-RA.CDS.3Carg23968-RA.CDS.3CDS
Carg23968-RA.CDS.4Carg23968-RA.CDS.4CDS
Carg23968-RA.CDS.5Carg23968-RA.CDS.5CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg23968-RA.three_prime_UTR.1Carg23968-RA.three_prime_UTR.1three_prime_UTR


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 287..307
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..109
NoneNo IPR availablePANTHERPTHR10288:SF171F17H15.1/F17H15.1coord: 27..310
NoneNo IPR availablePANTHERPTHR10288KH DOMAIN CONTAINING RNA BINDING PROTEINcoord: 27..310
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 141..208
score: 17.925
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 233..301
score: 17.024
NoneNo IPR availableCDDcd00105KH-Icoord: 238..301
e-value: 1.3548E-16
score: 71.8223
NoneNo IPR availableCDDcd00105KH-Icoord: 143..208
e-value: 1.48062E-14
score: 66.4295
IPR004087K Homology domainSMARTSM00322kh_6coord: 140..213
e-value: 5.0E-17
score: 72.6
coord: 232..306
e-value: 6.3E-16
score: 68.9
IPR004088K Homology domain, type 1PFAMPF00013KH_1coord: 144..210
e-value: 1.2E-16
score: 60.2
coord: 237..303
e-value: 3.7E-19
score: 68.2
IPR036612K Homology domain, type 1 superfamilyGENE3DG3DSA:3.30.1370.10coord: 135..231
e-value: 2.2E-25
score: 90.6
IPR036612K Homology domain, type 1 superfamilyGENE3DG3DSA:3.30.1370.10coord: 232..311
e-value: 5.8E-25
score: 89.0
IPR036612K Homology domain, type 1 superfamilySUPERFAMILYSSF54791Eukaryotic type KH-domain (KH-domain type I)coord: 233..308
IPR036612K Homology domain, type 1 superfamilySUPERFAMILYSSF54791Eukaryotic type KH-domain (KH-domain type I)coord: 144..219