Carg23639 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23639
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	mediator of RNA polymerase II transcription subunit 32
Location	Cucurbita_argyrosperma_scaffold_182 : 297459 .. 297926 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAGCTTAGTGGACTCTTTAAATAACGCATATCAGGAGTTCGTTTCTGGAGCAGCCAATGTCCTTGAAGCAAATGAGGCCTCAGGGGCTCAGAAGACAGCAGCAACCGATGCGGCTCTTGAAAATTTTAAACAGAAATGGGAGCTATTCAGGGTTGCTTGTGATCAAGCAGAGGAATTTGTGGAGTCTGTGAAGCAAAGGATAGGATCAGAGTGCCTTGTTGATGAGGCCACTGGTTCACTGGCTAGCAAGTCTGGGCAGGCCGCCGCCGCCACCACCACCGGCCTTCCTCCGATCAGCGCCGTTCGGTTGGAACAGATGAGCAAAGCTGTGAGATGGCTTGTGATTGAGCTGCAGCATGGGTCAGGAGCTGCTGCTGCTGCTGCTGCTGCTGCTTCTGCTTCAGCACACTCCCACCCTTCTGCTCCCTTTGATGCTAGATTTACTGAGGATGCAACACAATAG

mRNA sequence

ATGGATAGCTTAGTGGACTCTTTAAATAACGCATATCAGGAGTTCGTTTCTGGAGCAGCCAATGTCCTTGAAGCAAATGAGGCCTCAGGGGCTCAGAAGACAGCAGCAACCGATGCGGCTCTTGAAAATTTTAAACAGAAATGGGAGCTATTCAGGGTTGCTTGTGATCAAGCAGAGGAATTTGTGGAGTCTGTGAAGCAAAGGATAGGATCAGAGTGCCTTGTTGATGAGGCCACTGGTTCACTGGCTAGCAAGTCTGGGCAGGCCGCCGCCGCCACCACCACCGGCCTTCCTCCGATCAGCGCCGTTCGGTTGGAACAGATGAGCAAAGCTGTGAGATGGCTTGTGATTGAGCTGCAGCATGGGTCAGGAGCTGCTGCTGCTGCTGCTGCTGCTGCTTCTGCTTCAGCACACTCCCACCCTTCTGCTCCCTTTGATGCTAGATTTACTGAGGATGCAACACAATAG

Coding sequence (CDS)

ATGGATAGCTTAGTGGACTCTTTAAATAACGCATATCAGGAGTTCGTTTCTGGAGCAGCCAATGTCCTTGAAGCAAATGAGGCCTCAGGGGCTCAGAAGACAGCAGCAACCGATGCGGCTCTTGAAAATTTTAAACAGAAATGGGAGCTATTCAGGGTTGCTTGTGATCAAGCAGAGGAATTTGTGGAGTCTGTGAAGCAAAGGATAGGATCAGAGTGCCTTGTTGATGAGGCCACTGGTTCACTGGCTAGCAAGTCTGGGCAGGCCGCCGCCGCCACCACCACCGGCCTTCCTCCGATCAGCGCCGTTCGGTTGGAACAGATGAGCAAAGCTGTGAGATGGCTTGTGATTGAGCTGCAGCATGGGTCAGGAGCTGCTGCTGCTGCTGCTGCTGCTGCTTCTGCTTCAGCACACTCCCACCCTTCTGCTCCCTTTGATGCTAGATTTACTGAGGATGCAACACAATAG

Protein sequence

MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLASKSGQAAAATTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAAAAAAAAASASAHSHPSAPFDARFTEDATQ

Homology

[Close]

BLAST of Carg23639 vs. NCBI nr
Match: XP_023512845.1 (mediator of RNA polymerase II transcription subunit 32-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 240.4 bits (612), Expect = 4.2e-60
Identity = 152/156 (97.44%), Postives = 152/156 (97.44%), Query Frame = 0


Query: 1   MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 1   MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATGSLASKSGQAAA-ATTTGLPPISAVRLEQMSKAVRWLVIEL 120
           FVESVKQRIGSECLVDEATGSLA KSGQAAA A T GLPPISAVRLEQMSKAVRWLVIEL
Sbjct: 61  FVESVKQRIGSECLVDEATGSLAGKSGQAAATAATAGLPPISAVRLEQMSKAVRWLVIEL 120

Query: 121 QHGXXXXXXXXXXXXXXXXXXXSAPFDARFTEDATQ 156
           QHGXXXXXXXXXXXXXXXXXXXSAPFDARFTEDATQ
Sbjct: 121 QHGXXXXXXXXXXXXXXXXXXXSAPFDARFTEDATQ 156

[Close]

BLAST of Carg23639 vs. NCBI nr
Match: XP_023512843.1 (mediator of RNA polymerase II transcription subunit 32-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 240.4 bits (612), Expect = 4.2e-60
Identity = 152/156 (97.44%), Postives = 152/156 (97.44%), Query Frame = 0


Query: 1   MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 16  MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 75

Query: 61  FVESVKQRIGSECLVDEATGSLASKSGQAAA-ATTTGLPPISAVRLEQMSKAVRWLVIEL 120
           FVESVKQRIGSECLVDEATGSLA KSGQAAA A T GLPPISAVRLEQMSKAVRWLVIEL
Sbjct: 76  FVESVKQRIGSECLVDEATGSLAGKSGQAAATAATAGLPPISAVRLEQMSKAVRWLVIEL 135

Query: 121 QHGXXXXXXXXXXXXXXXXXXXSAPFDARFTEDATQ 156
           QHGXXXXXXXXXXXXXXXXXXXSAPFDARFTEDATQ
Sbjct: 136 QHGXXXXXXXXXXXXXXXXXXXSAPFDARFTEDATQ 171

[Close]

BLAST of Carg23639 vs. NCBI nr
Match: XP_022944394.1 (mediator of RNA polymerase II transcription subunit 32-like [Cucurbita moschata] >XP_022944395.1 mediator of RNA polymerase II transcription subunit 32-like [Cucurbita moschata] >XP_022944396.1 mediator of RNA polymerase II transcription subunit 32-like [Cucurbita moschata])

HSP 1 Score: 238.8 bits (608), Expect = 1.2e-59
Identity = 150/155 (96.77%), Postives = 150/155 (96.77%), Query Frame = 0


Query: 1   MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 1   MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATGSLASKSGQAAAATTTGLPPISAVRLEQMSKAVRWLVIELQ 120
           FVESVKQRIGSECLVDEATGSLA KSGQ AAATTTGLPPISAVRLEQMSKAVRWLVIELQ
Sbjct: 61  FVESVKQRIGSECLVDEATGSLAGKSGQ-AAATTTGLPPISAVRLEQMSKAVRWLVIELQ 120

Query: 121 HGXXXXXXXXXXXXXXXXXXXSAPFDARFTEDATQ 156
           HG   XXXXXXXXXXXXXXXXSAPFDARFTEDATQ
Sbjct: 121 HG---XXXXXXXXXXXXXXXXSAPFDARFTEDATQ 151

[Close]

BLAST of Carg23639 vs. NCBI nr
Match: XP_022986622.1 (mediator of RNA polymerase II transcription subunit 32-like isoform X2 [Cucurbita maxima] >XP_022986623.1 mediator of RNA polymerase II transcription subunit 32-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 238.4 bits (607), Expect = 1.6e-59
Identity = 146/155 (94.19%), Postives = 147/155 (94.84%), Query Frame = 0


Query: 1   MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 1   MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATGSLASKSGQAAAATTTGLPPISAVRLEQMSKAVRWLVIELQ 120
           FVESVKQRIGSECLVDEATGSLA KSGQ AAATTTGLPPISA+RLEQMSKAVRWLVIELQ
Sbjct: 61  FVESVKQRIGSECLVDEATGSLAGKSGQ-AAATTTGLPPISAIRLEQMSKAVRWLVIELQ 120

Query: 121 HGXXXXXXXXXXXXXXXXXXXSAPFDARFTEDATQ 156
           HG     XXXXXXXXXXXXX SAPFDARFTEDATQ
Sbjct: 121 HG-----XXXXXXXXXXXXXPSAPFDARFTEDATQ 149

[Close]

BLAST of Carg23639 vs. NCBI nr
Match: XP_022986620.1 (mediator of RNA polymerase II transcription subunit 32-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 238.4 bits (607), Expect = 1.6e-59
Identity = 146/155 (94.19%), Postives = 147/155 (94.84%), Query Frame = 0


Query: 1   MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 24  MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 83

Query: 61  FVESVKQRIGSECLVDEATGSLASKSGQAAAATTTGLPPISAVRLEQMSKAVRWLVIELQ 120
           FVESVKQRIGSECLVDEATGSLA KSGQ AAATTTGLPPISA+RLEQMSKAVRWLVIELQ
Sbjct: 84  FVESVKQRIGSECLVDEATGSLAGKSGQ-AAATTTGLPPISAIRLEQMSKAVRWLVIELQ 143

Query: 121 HGXXXXXXXXXXXXXXXXXXXSAPFDARFTEDATQ 156
           HG     XXXXXXXXXXXXX SAPFDARFTEDATQ
Sbjct: 144 HG-----XXXXXXXXXXXXXPSAPFDARFTEDATQ 172

[Close]

BLAST of Carg23639 vs. TAIR10
Match: AT1G11760.1 (MED32)

HSP 1 Score: 175.6 bits (444), Expect = 2.3e-44
Identity = 100/159 (62.89%), Postives = 116/159 (72.96%), Query Frame = 0


Query: 1   MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MD++VDSLN AY++FV  +A VLE+ E++G QK   TD ALENFK+KWELFRVACDQAEE
Sbjct: 1   MDNIVDSLNKAYEKFVLASAGVLESKESAGGQKALLTDTALENFKEKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATG-SLASKSGQAAAATT---TGLPPISAVRLEQMSKAVRWLV 120
           FVESVKQRIGSECLVDEATG +  +  GQA AA T   T LPPISAVRLEQMS+AVRWLV
Sbjct: 61  FVESVKQRIGSECLVDEATGLTTTAAGGQAPAAVTGAATSLPPISAVRLEQMSRAVRWLV 120

Query: 121 IELQHGXXXXXXXXXXXXXXXXXXXSAPFDARFTEDATQ 156
           +ELQ G                   S  FD+RF+ED+TQ
Sbjct: 121 LELQRG--------SGVAPGSVHSSSTGFDSRFSEDSTQ 151

[Close]

BLAST of Carg23639 vs. Swiss-Prot
Match: sp|Q84VW5|MED32_ARATH (Mediator of RNA polymerase II transcription subunit 32 OS=Arabidopsis thaliana OX=3702 GN=MED32 PE=1 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 4.2e-43
Identity = 100/159 (62.89%), Postives = 116/159 (72.96%), Query Frame = 0


Query: 1   MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MD++VDSLN AY++FV  +A VLE+ E++G QK   TD ALENFK+KWELFRVACDQAEE
Sbjct: 1   MDNIVDSLNKAYEKFVLASAGVLESKESAGGQKALLTDTALENFKEKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATG-SLASKSGQAAAATT---TGLPPISAVRLEQMSKAVRWLV 120
           FVESVKQRIGSECLVDEATG +  +  GQA AA T   T LPPISAVRLEQMS+AVRWLV
Sbjct: 61  FVESVKQRIGSECLVDEATGLTTTAAGGQAPAAVTGAATSLPPISAVRLEQMSRAVRWLV 120

Query: 121 IELQHGXXXXXXXXXXXXXXXXXXXSAPFDARFTEDATQ 156
           +ELQ G                   S  FD+RF+ED+TQ
Sbjct: 121 LELQRG--------SGVAPGSVHSSSTGFDSRFSEDSTQ 151

[Close]

BLAST of Carg23639 vs. TrEMBL
Match: tr|A0A0A0LIN7|A0A0A0LIN7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G245440 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 2.9e-57
Identity = 140/155 (90.32%), Postives = 142/155 (91.61%), Query Frame = 0


Query: 1   MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDSLVDSLNNAYQEFV+GAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATGSLASKSGQAAAATTTGLPPISAVRLEQMSKAVRWLVIELQ 120
           FVESVKQRIGSECLVDEATGSLA KSGQ+A   TT LPPISAVRLEQMSKAVRWLVIELQ
Sbjct: 61  FVESVKQRIGSECLVDEATGSLAGKSGQSA---TTSLPPISAVRLEQMSKAVRWLVIELQ 120

Query: 121 HGXXXXXXXXXXXXXXXXXXXSAPFDARFTEDATQ 156
           HG       XXXXXXXXXXX SAPFDARFTEDATQ
Sbjct: 121 HG------SXXXXXXXXXXXQSAPFDARFTEDATQ 146

[Close]

BLAST of Carg23639 vs. TrEMBL
Match: tr|A0A1S3C6T6|A0A1S3C6T6_CUCME (mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo OX=3656 GN=LOC103497499 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 4.9e-57
Identity = 139/155 (89.68%), Postives = 141/155 (90.97%), Query Frame = 0


Query: 1   MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDSLVDSLNNAYQEFV+GAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATGSLASKSGQAAAATTTGLPPISAVRLEQMSKAVRWLVIELQ 120
           FVESVKQRIGSECLVDEATGSLA KSGQ+    TTGLPPISAVRLEQMSKAVRWLVIELQ
Sbjct: 61  FVESVKQRIGSECLVDEATGSLAGKSGQSG---TTGLPPISAVRLEQMSKAVRWLVIELQ 120

Query: 121 HGXXXXXXXXXXXXXXXXXXXSAPFDARFTEDATQ 156
           HG       XXXXXXXXXXX SAPFDARFTED TQ
Sbjct: 121 HG------SXXXXXXXXXXXQSAPFDARFTEDTTQ 146

[Close]

BLAST of Carg23639 vs. TrEMBL
Match: tr|A0A2I4GYT8|A0A2I4GYT8_9ROSI (mediator of RNA polymerase II transcription subunit 32 isoform X3 OS=Juglans regia OX=51240 GN=LOC109012066 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 5.6e-53
Identity = 121/155 (78.06%), Postives = 125/155 (80.65%), Query Frame = 0


Query: 1   MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MD++VDSLNNAYQEFV  AANVLEA E SGAQKTAATDAALENFKQ+WELFRVACDQAEE
Sbjct: 1   MDNMVDSLNNAYQEFVVAAANVLEAKEVSGAQKTAATDAALENFKQRWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATGSLASKSGQAAAATTTGLPPISAVRLEQMSKAVRWLVIELQ 120
           FVESVKQRIGSECLVDEATGSLA K GQAA   TTGLPPISAVRLEQMSKAVRWLVIELQ
Sbjct: 61  FVESVKQRIGSECLVDEATGSLAGKPGQAA---TTGLPPISAVRLEQMSKAVRWLVIELQ 120

Query: 121 HGXXXXXXXXXXXXXXXXXXXSAPFDARFTEDATQ 156
           HG                    APFDARF+EDA Q
Sbjct: 121 HG---------SGTGASHSHPPAPFDARFSEDAAQ 143

[Close]

BLAST of Carg23639 vs. TrEMBL
Match: tr|A0A2I4GYU4|A0A2I4GYU4_9ROSI (mediator of RNA polymerase II transcription subunit 32 isoform X2 OS=Juglans regia OX=51240 GN=LOC109012066 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 5.6e-53
Identity = 121/155 (78.06%), Postives = 125/155 (80.65%), Query Frame = 0


Query: 1   MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MD++VDSLNNAYQEFV  AANVLEA E SGAQKTAATDAALENFKQ+WELFRVACDQAEE
Sbjct: 8   MDNMVDSLNNAYQEFVVAAANVLEAKEVSGAQKTAATDAALENFKQRWELFRVACDQAEE 67

Query: 61  FVESVKQRIGSECLVDEATGSLASKSGQAAAATTTGLPPISAVRLEQMSKAVRWLVIELQ 120
           FVESVKQRIGSECLVDEATGSLA K GQAA   TTGLPPISAVRLEQMSKAVRWLVIELQ
Sbjct: 68  FVESVKQRIGSECLVDEATGSLAGKPGQAA---TTGLPPISAVRLEQMSKAVRWLVIELQ 127

Query: 121 HGXXXXXXXXXXXXXXXXXXXSAPFDARFTEDATQ 156
           HG                    APFDARF+EDA Q
Sbjct: 128 HG---------SGTGASHSHPPAPFDARFSEDAAQ 150

[Close]

BLAST of Carg23639 vs. TrEMBL
Match: tr|A0A2I4GYU5|A0A2I4GYU5_9ROSI (mediator of RNA polymerase II transcription subunit 32 isoform X1 OS=Juglans regia OX=51240 GN=LOC109012066 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 5.6e-53
Identity = 121/155 (78.06%), Postives = 125/155 (80.65%), Query Frame = 0


Query: 1   MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MD++VDSLNNAYQEFV  AANVLEA E SGAQKTAATDAALENFKQ+WELFRVACDQAEE
Sbjct: 13  MDNMVDSLNNAYQEFVVAAANVLEAKEVSGAQKTAATDAALENFKQRWELFRVACDQAEE 72

Query: 61  FVESVKQRIGSECLVDEATGSLASKSGQAAAATTTGLPPISAVRLEQMSKAVRWLVIELQ 120
           FVESVKQRIGSECLVDEATGSLA K GQAA   TTGLPPISAVRLEQMSKAVRWLVIELQ
Sbjct: 73  FVESVKQRIGSECLVDEATGSLAGKPGQAA---TTGLPPISAVRLEQMSKAVRWLVIELQ 132

Query: 121 HGXXXXXXXXXXXXXXXXXXXSAPFDARFTEDATQ 156
           HG                    APFDARF+EDA Q
Sbjct: 133 HG---------SGTGASHSHPPAPFDARFSEDAAQ 155

The following BLAST results are available for this feature:

BLAST of Carg23639 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023512845.1	4.2e-60	97.44	mediator of RNA polymerase II transcription subunit 32-like isoform X2 [Cucurbit...	[more]
XP_023512843.1	4.2e-60	97.44	mediator of RNA polymerase II transcription subunit 32-like isoform X1 [Cucurbit...	[more]
XP_022944394.1	1.2e-59	96.77	mediator of RNA polymerase II transcription subunit 32-like [Cucurbita moschata]...	[more]
XP_022986622.1	1.6e-59	94.19	mediator of RNA polymerase II transcription subunit 32-like isoform X2 [Cucurbit...	[more]
XP_022986620.1	1.6e-59	94.19	mediator of RNA polymerase II transcription subunit 32-like isoform X1 [Cucurbit...	[more]

BLAST of Carg23639 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G11760.1	2.3e-44	62.89	MED32	[more]

BLAST of Carg23639 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q84VW5\|MED32_ARATH	4.2e-43	62.89	Mediator of RNA polymerase II transcription subunit 32 OS=Arabidopsis thaliana O...	[more]

BLAST of Carg23639 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LIN7\|A0A0A0LIN7_CUCSA	2.9e-57	90.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G245440 PE=4 SV=1	[more]
tr\|A0A1S3C6T6\|A0A1S3C6T6_CUCME	4.9e-57	89.68	mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo OX=3656 G...	[more]
tr\|A0A2I4GYT8\|A0A2I4GYT8_9ROSI	5.6e-53	78.06	mediator of RNA polymerase II transcription subunit 32 isoform X3 OS=Juglans reg...	[more]
tr\|A0A2I4GYU4\|A0A2I4GYU4_9ROSI	5.6e-53	78.06	mediator of RNA polymerase II transcription subunit 32 isoform X2 OS=Juglans reg...	[more]
tr\|A0A2I4GYU5\|A0A2I4GYU5_9ROSI	5.6e-53	78.06	mediator of RNA polymerase II transcription subunit 32 isoform X1 OS=Juglans reg...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0010150	leaf senescence
GO:0006355	regulation of transcription, DNA-templated
GO:0048364	root development
GO:0009631	cold acclimation

Vocabulary: **Cellular Component**
Term	Definition
GO:0016592	mediator complex

Vocabulary: **INTERPRO**
Term	Definition
IPR033244	MED32

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009631	cold acclimation
biological_process	GO:0010150	leaf senescence
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0048364	root development
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23639-RA	Carg23639-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033244	Mediator of RNA polymerase II transcription subunit 32	PANTHER	PTHR35989	FAMILY NOT NAMED	coord: 1..155

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23639	Csa2G245440	Cucumber (Chinese Long) v2	carcuB0812
Carg23639	CSPI02G12070	Wild cucumber (PI 183967)	carcpiB0831
Carg23639	Cucsa.109730	Cucumber (Gy14) v1	carcgyB0907
Carg23639	CmaCh20G008600	Cucurbita maxima (Rimu)	carcmaB1104
Carg23639	CmaCh02G004110	Cucurbita maxima (Rimu)	carcmaB1105
Carg23639	CmoCh20G008700	Cucurbita moschata (Rifu)	carcmoB1073
Carg23639	CmoCh02G004150	Cucurbita moschata (Rifu)	carcmoB1074
Carg23639	Lsi10G003520	Bottle gourd (USVL1VR-Ls)	carlsiB731
Carg23639	Cp4.1LG05g12460	Cucurbita pepo (Zucchini)	carcpeB1114
Carg23639	CsGy2G012060	Cucumber (Gy14) v2	carcgybB0786
Carg23639	CsaV3_2G014570	Cucumber (Chinese Long) v3	carcucB0835
Carg23639	Bhi10G001633	Wax gourd	carwgoB0931

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg23639	Carg22954	Silver-seed gourd	carcarB619

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23639	Cucurbita pepo (Zucchini)	carcpeB1113