CSPI02G12070 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G12070
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Mediator of RNA polymerase II transcription subunit 32
Location	Chr2 : 12362747 .. 12365974 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCACATTTTAAAACTTTGCGATAGATTTCAAAATGAAATTGCTACCTCTTCTAGTTAGTTTGAAGTCAATTTTTAAAAAATCTATCCCAAAAATATATTTCATTAGGTTGAAGAAATTAGGAATTTGGGAAATTTGATTTCCTCTCTTCTTCGCCATATTCCGATCTCAGTTCTCTCTCTCGACATCTCTCACTGTCTCGGCTCTCCTAGGCACAGCGCCGCTCCGCTGCTGCACCTCCGTCCAACATTCATCCAGCCTCCGTAGTCTTCTGCCGGTGAGCTCTCTTCCATCTCTATATTTCTTTCTGCATACCGTTTCCAACGCGCTGGTCATGAATTTCGAAAAAATGGATTAAAGACGGGCAAGAATGTATAGAATTTAAGGTTGGATGCTATGGAAATCGAAAGAATTTTGAAGCTATAAATTTGATTTTTCACCTTAGTTTTAGAAATGAAATTTTGTTCCAACCTTCTTCGTAAAGAGTAAATTGCTGACGCTTTTGATCTCCCCCGATTCTCCTCCTCACTTGGTAATCCATCTCTTTCAGTTTTCTGAGCCCTTCACTCTTCATTGCTCTCTCCACAGCACCCAACAGTTTACAGCAGAAGATTTGTGGTCTGCTACTCGTCCCACTTTCTGTTTCGGTATTGAAATCGTTGCTTATAAAGATTGAACCGAACCCAAAAGGGAGAAACCTGATACGCTTTTCAAGTTTGTTTTTCTTAATTTTGGTGGGTTGAATTCAGAGGATTCGATGGTTTTCACTGCCATCTTCTTCTTTTCTTCCTCCTCCGCTGGGAACTTTTCAATTTACGCCTCTCTTTTCTATTTTCGTAGATTATTGTCTTCCCTGTGCCTCACCATTATGAGTTTTTCTAAAAGAGAGAGACATATAGCTTGAACAAGTTTCCCCTCATTAACGGAAGGTTTTCTTCTCGCGGAGTGCCATCCCCATTTTATAGCTTATCTTTCACTTTTTGGGTTCAATGCTTTTAACTCGTGAACAAATTATTGATGATGTTAGATGTTTTATTAAATTTGCATTCACCGCTTAGCTTAAGCTTTTGGCTATCAAGTTGTTTCAGGATGTTATGGGTTCAGTACTTGCAATGTTTTTTCCTCTCCAATTAATATACATTCACACTTGCTTGGCGCTTGTTCATATTTCAAGCGCAAGTAAGGGGAGTGTTAGATATGATATTAAATTTTTCTTCACCCATTAGCTTGAGCTGGTGATTTAAGAGATGATCTGCATTGTTGAATGTATTTTCCATTTTTATTTCCTTGAATCGTTGCATATTTTGCTGCTAGAAATCATCTTAAAAGGCATTAGCCTATTGAGTTTTCACCCCTAGCTGGTTGGTAGCCCGGTGTATATATCTATTTCCCCGCCCCCTTTTCTAGAAGAGAAACAATGTCATTTCAATGGCATGAAGCGAGAGAATCCTGACACATCTGTAGATGAATTACATGAACGTTCTCCAATGAGAAATTAGCGAAGGTAGGGTATCTGCATTATGTGTACATAGTATGACAAAGAATTAGATTCATAAAGTTACCAAAAGAAGAGAGTATCCATGAAAATTCTATCAAGAGTCAATTTTAAAGTCCTCTTTGCAACCTGGAAAGGGTGACCCGTCAAACTTAAAGTGGGAAAATCAAAGATAGTGTTAGGCTAAGGTATGGAACAATTGAAAGAAGTTAAAATAATATCCCCTATCGACAAGTACAAAGACAGTGAGCAAATAGGTGGATCTCTTAAGCTGCAGAACACATAACACACCAAGATGGAGAAAGGTGCAAGGGAACTAATTGGGATTAGTTTGGTAATAGTAGGGGGCGGTCAGGTAATTAGTTAGGAAGTTGGTTAGGGTATTTGGTTATATATAGAGGTAGGGGGATTGAGGGAAGGAATCAAGTAGTTAGTGATTTACTTACAGCATCATATATTCATATAAATGAGCACACAAAACGTTTATGTTTTAGTTTTTGTTGTCAGGATTAGGAATACAAACATAGTCCCATCTTGGCTAGGGAAGGAAAAGATCCATGGTATATAATTGAGGATGCTTATCAGTTATCTCCATTGGACCATTGGTATGATCATTTTTAGGTTAAGTCAAGAGCAAACCATGATAGCTTATCTTCAGAAGAGTATCTTACCGGTTGCCATTGTCGAAATATGTTGAGGGTCCAAATCATTTTTAACATTTGTTTTTATTGAATAATTTAAACAAATATGGGTTCTTTTACACAGTTAGTAGGCTAAAGTGGCATATGAAAGTTTAGGAACCAAAATGCAATTGATATCTAAGTTCAAGTTCTTGCTTGTATTCTCGTGCATATTAGCATTTCCCAAGAGACTAGACTCTAGATACTTACTTCCTTGGTTACCGTATATTTAGGTATCTGATATGGACAGCCTAGTGGACTCTTTAAATAACGCATATCAGGAGTTTGTTGCTGGAGCAGCTAATGTTCTTGAAGCAAATGAAGCCTCTGGGGCTCAGAAGACAGCAGCAACAGATGCCGCTCTTGAGAATTTTAAACAAAAATGGGAGCTATTCAGGGTTGCTTGTGATCAAGCAGAGGAGTTTGTAGAGTCTGTGAAGCAAAGGATAGGATCAGAGTGCCTTGTTGACGAGGCCACTGGTTCACTGGCTGGCAAGTCTGGGCAGTCTGCCACCACTGGCCTTCCTCCGATCAGTGCTGTTCGATTGGAACAGATGAGCAAAGCGGTAAGATGGCTCGTGATTGAGTTGCAGCACGGCTCAGGAGCTGCTGCTTCTGCTTCAGCACACTCTCATCAGTCTGCTCCTTTTGATGCTAGATTTACTGAGGATGCAACCCAATAGGTACCTATTATCTTTTGAGGTTATAACGTAACAAGTTCTTGTTTTCTGTTTTGCATGAAATGGCTTTTTTGGTTGGCGGTGGAGCGTTTACTGTGTAAGATAATCGGCTTGAGCTTTAACTATACATGAAAAAGCGGATCCATTTGTTCTGTATCTATTGTTAACTAATATAGTTTCATGTTCTTTGTACTTGTTTGTTTTTCTTGGAGGTTTGGTGGGGAGAAATTGTCTCTAGTATATATACTAATGTGGGGATTCAAAACTAAGGTGTCTCCAGTTTGTGGATTTGATTTCATTTGTGTTATTAAAATGCATAGAAAAATATTTCCATTTAACATTTAGTTTAGGGGTAATTTGAGACGAGTGTTATGC

mRNA sequence

ATGGACAGCCTAGTGGACTCTTTAAATAACGCATATCAGGAGTTTGTTGCTGGAGCAGCTAATGTTCTTGAAGCAAATGAAGCCTCTGGGGCTCAGAAGACAGCAGCAACAGATGCCGCTCTTGAGAATTTTAAACAAAAATGGGAGCTATTCAGGGTTGCTTGTGATCAAGCAGAGGAGTTTGTAGAGTCTGTGAAGCAAAGGATAGGATCAGAGTGCCTTGTTGACGAGGCCACTGGTTCACTGGCTGGCAAGTCTGGGCAGTCTGCCACCACTGGCCTTCCTCCGATCAGTGCTGTTCGATTGGAACAGATGAGCAAAGCGGTAAGATGGCTCGTGATTGAGTTGCAGCACGGCTCAGGAGCTGCTGCTTCTGCTTCAGCACACTCTCATCAGTCTGCTCCTTTTGATGCTAGATTTACTGAGGATGCAACCCAATAG

Coding sequence (CDS)

ATGGACAGCCTAGTGGACTCTTTAAATAACGCATATCAGGAGTTTGTTGCTGGAGCAGCTAATGTTCTTGAAGCAAATGAAGCCTCTGGGGCTCAGAAGACAGCAGCAACAGATGCCGCTCTTGAGAATTTTAAACAAAAATGGGAGCTATTCAGGGTTGCTTGTGATCAAGCAGAGGAGTTTGTAGAGTCTGTGAAGCAAAGGATAGGATCAGAGTGCCTTGTTGACGAGGCCACTGGTTCACTGGCTGGCAAGTCTGGGCAGTCTGCCACCACTGGCCTTCCTCCGATCAGTGCTGTTCGATTGGAACAGATGAGCAAAGCGGTAAGATGGCTCGTGATTGAGTTGCAGCACGGCTCAGGAGCTGCTGCTTCTGCTTCAGCACACTCTCATCAGTCTGCTCCTTTTGATGCTAGATTTACTGAGGATGCAACCCAATAG

Homology

[Close]

BLAST of CSPI02G12070 vs. Swiss-Prot
Match: MED32_ARATH (Mediator of RNA polymerase II transcription subunit 32 OS=Arabidopsis thaliana GN=MED32 PE=1 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 8.4e-46
Identity = 104/153 (67.97%), Postives = 120/153 (78.43%), Query Frame = 1


Query: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MD++VDSLN AY++FV  +A VLE+ E++G QK   TD ALENFK+KWELFRVACDQAEE
Sbjct: 1   MDNIVDSLNKAYEKFVLASAGVLESKESAGGQKALLTDTALENFKEKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATG---SLAGKSGQSATTG----LPPISAVRLEQMSKAVRWLV 120
           FVESVKQRIGSECLVDEATG   + AG    +A TG    LPPISAVRLEQMS+AVRWLV
Sbjct: 61  FVESVKQRIGSECLVDEATGLTTTAAGGQAPAAVTGAATSLPPISAVRLEQMSRAVRWLV 120

Query: 121 IELQHGSGAAASASAHSHQSAPFDARFTEDATQ 147
           +ELQ GSG  A  S HS  S  FD+RF+ED+TQ
Sbjct: 121 LELQRGSG-VAPGSVHS-SSTGFDSRFSEDSTQ 151

[Close]

BLAST of CSPI02G12070 vs. TrEMBL
Match: A0A0A0LIN7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G245440 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 6.9e-71
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 1


Query: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATGSLAGKSGQSATTGLPPISAVRLEQMSKAVRWLVIELQHGS 120
           FVESVKQRIGSECLVDEATGSLAGKSGQSATT LPPISAVRLEQMSKAVRWLVIELQHGS
Sbjct: 61  FVESVKQRIGSECLVDEATGSLAGKSGQSATTSLPPISAVRLEQMSKAVRWLVIELQHGS 120

Query: 121 GAAASASAHSHQSAPFDARFTEDATQ 147
           GAAASASAHSHQSAPFDARFTEDATQ
Sbjct: 121 GAAASASAHSHQSAPFDARFTEDATQ 146

[Close]

BLAST of CSPI02G12070 vs. TrEMBL
Match: B9H0P1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s16010g PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 8.4e-61
Identity = 122/146 (83.56%), Postives = 132/146 (90.41%), Query Frame = 1


Query: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDS+VDSLNNAYQ+FV  AANVLEA E SG QKTAATD ALENFKQKWELFRV+CDQAEE
Sbjct: 1   MDSIVDSLNNAYQDFVGAAANVLEAKELSGGQKTAATDVALENFKQKWELFRVSCDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATGSLAGKSGQSATTGLPPISAVRLEQMSKAVRWLVIELQHGS 120
           FVESVKQR+GSECLVDEATGS++G+SGQ   TGLPPISAVRLEQMSKAVRWLVIELQHGS
Sbjct: 61  FVESVKQRVGSECLVDEATGSVSGRSGQGGVTGLPPISAVRLEQMSKAVRWLVIELQHGS 120

Query: 121 GAAASASAHSHQSAPFDARFTEDATQ 147
           GAA  A+ H+H SAPFDARF+EDA Q
Sbjct: 121 GAAGGAAGHAHPSAPFDARFSEDAAQ 146

[Close]

BLAST of CSPI02G12070 vs. TrEMBL
Match: A0A061E0U2_THECC (MED32, putative OS=Theobroma cacao GN=TCM_046999 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 8.4e-61
Identity = 126/146 (86.30%), Postives = 135/146 (92.47%), Query Frame = 1


Query: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MD++VDSLNNAYQEFVA AANVLE  E+S AQKTAATDAALEN KQKWELFRVACDQAEE
Sbjct: 42  MDNIVDSLNNAYQEFVAAAANVLEIKESSAAQKTAATDAALENLKQKWELFRVACDQAEE 101

Query: 61  FVESVKQRIGSECLVDEATGSLAGKSGQSATTGLPPISAVRLEQMSKAVRWLVIELQHGS 120
           FVES+KQRIGSECLVDEATGS+AGKSGQ+ TTGLPPISAVRLEQMSKAVRWLVIELQHGS
Sbjct: 102 FVESIKQRIGSECLVDEATGSMAGKSGQALTTGLPPISAVRLEQMSKAVRWLVIELQHGS 161

Query: 121 GAAASASAHSHQSAPFDARFTEDATQ 147
           G+A  A AH+H SAPFDARF+EDA Q
Sbjct: 162 GSAGGA-AHAHPSAPFDARFSEDAAQ 186

[Close]

BLAST of CSPI02G12070 vs. TrEMBL
Match: A0A067LG33_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10073 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 8.4e-61
Identity = 126/146 (86.30%), Postives = 132/146 (90.41%), Query Frame = 1


Query: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDS+VDSLNNAYQEF+A AANVLEA E +GAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 1   MDSIVDSLNNAYQEFIAAAANVLEAKETAGAQKTAATDAALENFKQKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATGSLAGKSGQSATTGLPPISAVRLEQMSKAVRWLVIELQHGS 120
           FVESVKQRIGSECLVDEATGS+ GKSG   TTGLPPISAVRLEQMSKAVRWLVIELQHGS
Sbjct: 61  FVESVKQRIGSECLVDEATGSVTGKSG---TTGLPPISAVRLEQMSKAVRWLVIELQHGS 120

Query: 121 GAAASASAHSHQSAPFDARFTEDATQ 147
           GAA   + H+H SAPFDARF EDA Q
Sbjct: 121 GAAGGVAGHAHSSAPFDARFPEDAAQ 143

[Close]

BLAST of CSPI02G12070 vs. TrEMBL
Match: A5C6M5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032482 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 3.2e-60
Identity = 125/146 (85.62%), Postives = 135/146 (92.47%), Query Frame = 1


Query: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MD++VD+LNNAYQEFV+ AA+VLEA E+SGAQKTAATDAALENFKQ+WELFRVACDQAEE
Sbjct: 1   MDNIVDALNNAYQEFVSAAASVLEAKESSGAQKTAATDAALENFKQRWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATGSLAGKSGQSATTGLPPISAVRLEQMSKAVRWLVIELQHGS 120
           FVESVKQRIGSECLVDEATGS+AGK GQ+ TTGLPPISAVRLEQMSKAVRWLVIELQHGS
Sbjct: 61  FVESVKQRIGSECLVDEATGSVAGKPGQAVTTGLPPISAVRLEQMSKAVRWLVIELQHGS 120

Query: 121 GAAASASAHSHQSAPFDARFTEDATQ 147
           G A   S HSH SAPFDARF+EDA Q
Sbjct: 121 GTAGGPS-HSHVSAPFDARFSEDAAQ 145

[Close]

BLAST of CSPI02G12070 vs. TAIR10
Match: AT1G11760.1 (AT1G11760.1 MED32)

HSP 1 Score: 184.5 bits (467), Expect = 4.7e-47
Identity = 104/153 (67.97%), Postives = 120/153 (78.43%), Query Frame = 1


Query: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MD++VDSLN AY++FV  +A VLE+ E++G QK   TD ALENFK+KWELFRVACDQAEE
Sbjct: 1   MDNIVDSLNKAYEKFVLASAGVLESKESAGGQKALLTDTALENFKEKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATG---SLAGKSGQSATTG----LPPISAVRLEQMSKAVRWLV 120
           FVESVKQRIGSECLVDEATG   + AG    +A TG    LPPISAVRLEQMS+AVRWLV
Sbjct: 61  FVESVKQRIGSECLVDEATGLTTTAAGGQAPAAVTGAATSLPPISAVRLEQMSRAVRWLV 120

Query: 121 IELQHGSGAAASASAHSHQSAPFDARFTEDATQ 147
           +ELQ GSG  A  S HS  S  FD+RF+ED+TQ
Sbjct: 121 LELQRGSG-VAPGSVHS-SSTGFDSRFSEDSTQ 151

[Close]

BLAST of CSPI02G12070 vs. NCBI nr
Match: gi|449462252|ref|XP_004148855.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 32 [Cucumis sativus])

HSP 1 Score: 274.6 bits (701), Expect = 9.8e-71
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 1


Query: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATGSLAGKSGQSATTGLPPISAVRLEQMSKAVRWLVIELQHGS 120
           FVESVKQRIGSECLVDEATGSLAGKSGQSATT LPPISAVRLEQMSKAVRWLVIELQHGS
Sbjct: 61  FVESVKQRIGSECLVDEATGSLAGKSGQSATTSLPPISAVRLEQMSKAVRWLVIELQHGS 120

Query: 121 GAAASASAHSHQSAPFDARFTEDATQ 147
           GAAASASAHSHQSAPFDARFTEDATQ
Sbjct: 121 GAAASASAHSHQSAPFDARFTEDATQ 146

[Close]

BLAST of CSPI02G12070 vs. NCBI nr
Match: gi|659116160|ref|XP_008457936.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 32 [Cucumis melo])

HSP 1 Score: 273.9 bits (699), Expect = 1.7e-70
Identity = 144/146 (98.63%), Postives = 144/146 (98.63%), Query Frame = 1


Query: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATGSLAGKSGQSATTGLPPISAVRLEQMSKAVRWLVIELQHGS 120
           FVESVKQRIGSECLVDEATGSLAGKSGQS TTGLPPISAVRLEQMSKAVRWLVIELQHGS
Sbjct: 61  FVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAVRLEQMSKAVRWLVIELQHGS 120

Query: 121 GAAASASAHSHQSAPFDARFTEDATQ 147
           GAAASASAHSHQSAPFDARFTED TQ
Sbjct: 121 GAAASASAHSHQSAPFDARFTEDTTQ 146

[Close]

BLAST of CSPI02G12070 vs. NCBI nr
Match: gi|802539166|ref|XP_012069704.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 32 [Jatropha curcas])

HSP 1 Score: 241.1 bits (614), Expect = 1.2e-60
Identity = 126/146 (86.30%), Postives = 132/146 (90.41%), Query Frame = 1


Query: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDS+VDSLNNAYQEF+A AANVLEA E +GAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 1   MDSIVDSLNNAYQEFIAAAANVLEAKETAGAQKTAATDAALENFKQKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATGSLAGKSGQSATTGLPPISAVRLEQMSKAVRWLVIELQHGS 120
           FVESVKQRIGSECLVDEATGS+ GKSG   TTGLPPISAVRLEQMSKAVRWLVIELQHGS
Sbjct: 61  FVESVKQRIGSECLVDEATGSVTGKSG---TTGLPPISAVRLEQMSKAVRWLVIELQHGS 120

Query: 121 GAAASASAHSHQSAPFDARFTEDATQ 147
           GAA   + H+H SAPFDARF EDA Q
Sbjct: 121 GAAGGVAGHAHSSAPFDARFPEDAAQ 143

[Close]

BLAST of CSPI02G12070 vs. NCBI nr
Match: gi|224077816|ref|XP_002305420.1| (hypothetical protein POPTR_0004s16010g [Populus trichocarpa])

HSP 1 Score: 241.1 bits (614), Expect = 1.2e-60
Identity = 122/146 (83.56%), Postives = 132/146 (90.41%), Query Frame = 1


Query: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDS+VDSLNNAYQ+FV  AANVLEA E SG QKTAATD ALENFKQKWELFRV+CDQAEE
Sbjct: 1   MDSIVDSLNNAYQDFVGAAANVLEAKELSGGQKTAATDVALENFKQKWELFRVSCDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATGSLAGKSGQSATTGLPPISAVRLEQMSKAVRWLVIELQHGS 120
           FVESVKQR+GSECLVDEATGS++G+SGQ   TGLPPISAVRLEQMSKAVRWLVIELQHGS
Sbjct: 61  FVESVKQRVGSECLVDEATGSVSGRSGQGGVTGLPPISAVRLEQMSKAVRWLVIELQHGS 120

Query: 121 GAAASASAHSHQSAPFDARFTEDATQ 147
           GAA  A+ H+H SAPFDARF+EDA Q
Sbjct: 121 GAAGGAAGHAHPSAPFDARFSEDAAQ 146

[Close]

BLAST of CSPI02G12070 vs. NCBI nr
Match: gi|590687753|ref|XP_007042754.1| (MED32, putative [Theobroma cacao])

HSP 1 Score: 241.1 bits (614), Expect = 1.2e-60
Identity = 126/146 (86.30%), Postives = 135/146 (92.47%), Query Frame = 1


Query: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MD++VDSLNNAYQEFVA AANVLE  E+S AQKTAATDAALEN KQKWELFRVACDQAEE
Sbjct: 42  MDNIVDSLNNAYQEFVAAAANVLEIKESSAAQKTAATDAALENLKQKWELFRVACDQAEE 101

Query: 61  FVESVKQRIGSECLVDEATGSLAGKSGQSATTGLPPISAVRLEQMSKAVRWLVIELQHGS 120
           FVES+KQRIGSECLVDEATGS+AGKSGQ+ TTGLPPISAVRLEQMSKAVRWLVIELQHGS
Sbjct: 102 FVESIKQRIGSECLVDEATGSMAGKSGQALTTGLPPISAVRLEQMSKAVRWLVIELQHGS 161

Query: 121 GAAASASAHSHQSAPFDARFTEDATQ 147
           G+A  A AH+H SAPFDARF+EDA Q
Sbjct: 162 GSAGGA-AHAHPSAPFDARFSEDAAQ 186

The following BLAST results are available for this feature:

BLAST of CSPI02G12070 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MED32_ARATH	8.4e-46	67.97	Mediator of RNA polymerase II transcription subunit 32 OS=Arabidopsis thaliana G...	[more]

BLAST of CSPI02G12070 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIN7_CUCSA	6.9e-71	99.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G245440 PE=4 SV=1	[more]
B9H0P1_POPTR	8.4e-61	83.56	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s16010g PE=4 SV=1	[more]
A0A061E0U2_THECC	8.4e-61	86.30	MED32, putative OS=Theobroma cacao GN=TCM_046999 PE=4 SV=1	[more]
A0A067LG33_JATCU	8.4e-61	86.30	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10073 PE=4 SV=1	[more]
A5C6M5_VITVI	3.2e-60	85.62	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032482 PE=4 SV=1	[more]

BLAST of CSPI02G12070 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G11760.1	4.7e-47	67.97	MED32	[more]

BLAST of CSPI02G12070 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462252\|ref\|XP_004148855.1\|	9.8e-71	99.32	PREDICTED: mediator of RNA polymerase II transcription subunit 32 [Cucumis sativ...	[more]
gi\|659116160\|ref\|XP_008457936.1\|	1.7e-70	98.63	PREDICTED: mediator of RNA polymerase II transcription subunit 32 [Cucumis melo]	[more]
gi\|802539166\|ref\|XP_012069704.1\|	1.2e-60	86.30	PREDICTED: mediator of RNA polymerase II transcription subunit 32 [Jatropha curc...	[more]
gi\|224077816\|ref\|XP_002305420.1\|	1.2e-60	83.56	hypothetical protein POPTR_0004s16010g [Populus trichocarpa]	[more]
gi\|590687753\|ref\|XP_007042754.1\|	1.2e-60	86.30	MED32, putative [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009631	cold acclimation
biological_process	GO:0010150	leaf senescence
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0048364	root development
cellular_component	GO:0016592	mediator complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G12070.1	CSPI02G12070.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35989	FAMILY NOT NAMED	coord: 2..146 score: 3.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI02G12070	Cla016549	Watermelon (97103) v1	cpiwmB157
CSPI02G12070	Csa2G245440	Cucumber (Chinese Long) v2	cpicuB065
CSPI02G12070	MELO3C020986	Melon (DHL92) v3.5.1	cpimeB095
CSPI02G12070	ClCG11G004520	Watermelon (Charleston Gray)	cpiwcgB111
CSPI02G12070	Lsi10G003520	Bottle gourd (USVL1VR-Ls)	cpilsiB091
CSPI02G12070	MELO3C020986.2	Melon (DHL92) v3.6.1	cpimedB086
CSPI02G12070	CsaV3_2G014570	Cucumber (Chinese Long) v3	cpicucB080
CSPI02G12070	Cla97C11G211280	Watermelon (97103) v2	cpiwmbB112
CSPI02G12070	Bhi10G001633	Wax gourd	cpiwgoB181
CSPI02G12070	Cucsa.109730	Cucumber (Gy14) v1	cgycpiB134
CSPI02G12070	CmaCh02G004110	Cucurbita maxima (Rimu)	cmacpiB593
CSPI02G12070	CmaCh20G008600	Cucurbita maxima (Rimu)	cmacpiB547
CSPI02G12070	CmoCh20G008700	Cucurbita moschata (Rifu)	cmocpiB536
CSPI02G12070	CmoCh02G004150	Cucurbita moschata (Rifu)	cmocpiB582
CSPI02G12070	Cp4.1LG05g12460	Cucurbita pepo (Zucchini)	cpecpiB706
CSPI02G12070	Cp4.1LG16g02300	Cucurbita pepo (Zucchini)	cpecpiB269
CSPI02G12070	CsGy2G012060	Cucumber (Gy14) v2	cgybcpiB056
CSPI02G12070	Carg22954	Silver-seed gourd	carcpiB0926
CSPI02G12070	Carg23639	Silver-seed gourd	carcpiB0831

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI02G12070	Cucurbita pepo (Zucchini)	cpecpiB236
CSPI02G12070	Bottle gourd (USVL1VR-Ls)	cpilsiB097
CSPI02G12070	Melon (DHL92) v3.6.1	cpimedB096
CSPI02G12070	Cucumber (Gy14) v2	cgybcpiB308
CSPI02G12070	Cucumber (Chinese Long) v3	cpicucB120
CSPI02G12070	Watermelon (97103) v2	cpiwmbB124
CSPI02G12070	Wax gourd	cpiwgoB146
CSPI02G12070	Wild cucumber (PI 183967)	cpicpiB093
CSPI02G12070	Cucumber (Gy14) v1	cgycpiB359
CSPI02G12070	Cucurbita maxima (Rimu)	cmacpiB512
CSPI02G12070	Cucurbita moschata (Rifu)	cmocpiB500
CSPI02G12070	Cucumber (Chinese Long) v2	cpicuB098
CSPI02G12070	Melon (DHL92) v3.5.1	cpimeB102
CSPI02G12070	Watermelon (Charleston Gray)	cpiwcgB131
CSPI02G12070	Watermelon (97103) v1	cpiwmB150