CsGy2G012060 (gene) Cucumber (Gy14) v2

Overview
NameCsGy2G012060
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionmediator of RNA polymerase II transcription subunit 32 isoform X2
LocationChr2 : 12040224 .. 12045288 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGAGGCTCGATTGTTCGAAGCGACAGAGAAACTGAGAGATGCAGTAAAAGGTGAAGCTACTACCATTTTGAGCGAAGCTTGTGAGAATGGCGCTGAGTTCTTAGAGCTCCAATATGAAACCAAAGAAAGAGACTATAGGAATTACAACAGTATCAACGAAGCTCCAAGATTAGCTTCCCATTGTACCACTCCTACATGTTTGCTTAAGGCCCAATGGGCCGGCCCATGTTTCAAATAATTCGTTTCTGGTTTTTCAATAAGAGATAGTTCGATAACAATTATATTCAAGAAAAATTGTAGATAGCAACTCAAAAAAATGACAAAAGACGGCATAAAGAAGAAACACTCCAAAAAGCTAGGTGTACCATTTTTTATAATTATATTAACCTCCAATTTACCCAATGATTATGGGATAATTTGTAGATTGAAAGCAGTATATTTTAATGGCTTCAATATGAGGTCGAATATCGCAGATTTCACAAAAAAAAAAAAAAAATGTATTTTACGAACAACCTTCAACTAGAAATCTATGATTTTGTTGTTGGACAATATTGCAATGTAAAGCACTTATTTTAGCATGTTTAAAAATTGAAACTAGGTAACATTTAATAGGATCCATTTCTTTAGTAAAGGTGGAAGATATGAAGTTGTAGTTTGTACTATAGGTGTTGAATCATTAATGGTAGGCTTTCCTATTACTAGTAATCCTACAGGCTTATTGTTGAATAGACTTGGAATTGATTTATGTGAAACTCGCTTAACTTTCTTTTCATCCCTCTTAGCCTATGATTTTAAGGATTGGTCTTTCCTTTTGTCTAAATTGTCTCATCATCACGTGTCACTAGTTTTGCACTACTTAGAAATTTCAATACCAGTTTATTATATAAGTTGCACATTATTTTATAGCTTCTTAAGGAGACATTGGACAACCGTGTTAGTAGAAACTTTGTTACAAGTTCTTAGTATTTGCTTAAGTGAGAAATATTCTTTAAAGAAAAATGCAACGGTTATATATGCCTAGGAATTATTTAAGGTGTTACAATACATGTTTAGGAGTACAAGCAATTAAGTTCAGTAAGCCTCTTATGGCAATTAAGTTCAGTAAGCCTCTTATGTACTTTTGTTTTATCTCACACGCATCTTGTACATTCCAATATTTCACTATACGTTTTGAAATCAAATTGCTACATGTCCTAAGCCATTTAAAGTGATTCTATGCATGTTTAATAAGTCTCTTAGGCTCTTATGTTTTATCTCGCATGCATCCCACATATATCTTTCACATTCCAAACTTTCACTATGCATTTCAAAATTAAATTGCTACCCCTCCTAAGTCATTTGGAGTGGAGTGTTCTATGCATGTTTAGTAAGTCTCTTATACCCTTATATTTTATCTAGCACATTTCAAACTTTCAATATGGGTTTTAAAATCAAATTGCTATCCCTCTTAAGCTATTTAGAGTGTTTCTATACATATTTAGTAAGTTTTAGGTCCTTATATTTTATCTCGCACACACTCCAAACTTTCACTGTGTGTTTTAAAATTAAATTGCTACATTTTCTAAACGATTTGAAGTGATTCTATACATATTTAGCAAGTATTTTAGACCTTAGAAATTTTATCTCGTACTCATCATCCAACACATTTTAAACTTTCGCCATAGATTTCAGAATGAAATTGCTACCCCTTCTAGTTAGTTTGAAGTCAAAATTTAAAAAATCTATCCCAAAAATCTTTTATACTTTTTTTTTTTTTTTTTTTTTTGCAATCTCCCAAGAATATATTTAATTAGGTTGAAGAAATTAGGAAATTGGGAAATTTGATTTCCTCTCTTCTTCGCCATATTCCGATCTCAGTTCTCTCTCTCGACATCTCTCACTGTCTCGGCTCTCCTAGGCACAGCGCCGCCCACGCACGTCGCCGCCGCTCCGCTGCTGCACCTCCGTCCAACATTCATCCAGCCTCCGTAGTCTTGTGCCGGTGAGCTCTCTTCCATCTCTATATTTCTTTCTGCATACCGTTTCCAACGCGCTGGTCATGAATTTCGAAAAAATGGATTAAAGACGGGCAAGAATGTATAGAATTTAAGGTTGGATGCAATGGAAACGAAAGAATTTTGAAGCTATAAATTTGATTTTTCACCTTAGTTTTAGAAATGAAATTTTGTTCCAACCTTCTTCGTAAAGAGTAAATTGCTGACGCTTTTGATCTCCCCCGATTCTCCTCCTCACTTGGTAATCCATCTCTTTCAGTTTTCTGAGCCCTTCACTCTTCATTGCTCTCTCCACAGCACCCAACAGTTTACAGCAGAAAATTTGTGGTTTGCTACTCGTCCCACTTTCTGTTTCGGTATTGAAATCGTTGCTTATAAAGATTGAACCGAACCCAAAAGGGAGAAACCTGATACGCTTTTCAAGTTTGTTTTTCTTAATTTTGGTGGGTTGAATTCAGAGGATTCGATGGTTTTCACTGCCATTTTCTTCTTTTCTTCCACCTCCGCTGGGGACTTTTCAATTTACGCCTCTCTTTTCTATTTTCGTAGATTATTGTCTTCCCTGTGCCTCATCATTATGAGTTTTTCTAAAAGAGAGAGACATATAGCTTGAACAAGTTTCCCCTCATTAACGGAAGGTTTTCTTCTCGCGGAGTGCCATCCCCATTTTATAGCTTATCTTTCACTTTTTGGGTTCAATGCTTTTAACTCGTGAACAAATTATTGATGATGTTAGATGTTTTATTAAATTTGCATTCACCGCTTAGCTTAAGCTTTTGGCTATCAAGTTGTTTCAGGATGTTATGGGTTCAAGTACTTGCAATGTTTTTTCCTCTCCAATTAATATACATTCACACTTGCTTGGCCAGTAAGGGGAGTGTTAGATATGATATTAAATTTTTCTTCACCCATCAGCTTAAGCTTTTGTGTTGAGCTGGTGATTTAAGAGATGATCTGCATTGTTGAATGTATTTTCCATTTTTATTTCCTTGAATCGTTGCATATTTTGCTGCTAGAAATCATCTTAAAAGGCATTAGCCTATTGAGTTTTCACCCCTAGCTGGTTGGTAGCCCGGTGTATATATCTATTTCCCTGCCCCCTTTTCTAGAAGAGAAACAATGTCATTTCAATGGCATGAAGCGAGAGAATCCTGACACATCTGTAGGTGAATTACATGAACGTTCTCCAATTAGAAATTAGCGAAGGTAGGGTATCTGCATTATGTGTACATAGTATGACAAAGAATTAGGTTCATAAAGTTACCAAAAGAAGAGAGTATCCGTGAAAATTCTATCAAGAGTCAATTTTAAAGTCCTCTTTGCAACCTGGAAAGGGTGACCCGTCAAACTTAAAGTGGGAAAATCAAAGATAGTGTTAGGCTAAGGTATGGAACAATTGAAAGAAGTTAAAATAATATCCCCTATCGACAAGTACAAAGACAGTGAGCAAATAGGTGGATCTCTTAAGCTGCAGAACACATAACACACCAAGATGGAGAAAGGTGCAAGGGAACTAATTGGGATTAGTTTGGTAATAGTAGGGGGCGGTCAGGTAATTAGTTAGGAAGTTGGTTAGGGTATTTGGTTATATATAGAGGTAGGGGGATTGAGGGAAGGAATCAAGTAGTTAGTGATTTACTTACAGCATCATATATTCATATAAATGAACACACAAAACGTTTATGTTTTAGTTTTTGTTGTCAGGATTAGGAATACAAACATAGTCCCATCCTGGCTAGGGAAGGAAAAGATCCATGGTATATAATTGAGGATGCTTATCAGTTATCTCCATTGGACCATTGGTATAATCATTTTTAGGTAAAGTCAAGAGCAAACCATGAGAGCTTATCTTCAGAAGAGTATCTTACCGGTTGCCATTGTCGAAATATGTTGAGGGTCCAAATCATCTTTAACATTTGTTTTTATTGAATAATTTAAACAAATATGGGTTCTTTTACACAGTTTGTAGGCTAAAGTGGCATATGAAAGTTTAGGAACCAAAATGCAATTGATATCTAAGTTCAAGTTCTTGCTTGTATTCTCGTGCATATTAGCATTTCCCAAGAGACTAGACTCTAGGTACTTACTTCCTTGGTTACCGTATATTTAGGTATCTGATATGGACAGCCTAGTGGACTCTTTAAATAACGCATATCAGGAGTTTGTTGCTGGAGCAGCTAATGTTCTTGAAGCAAATGAAGCCTCTGGGGCTCAGAAGACAGCAGCAACAGATGCCGCTCTTGAGAATTTTAAACAAAAATGGGAGCTATTCAGGGTTGCTTGTGATCAAGCAGAGGAGTTTGTAGAGTCTGTGAAGCAAAGGATAGGATCAGAGTGCCTTGTTGACGAGGCCACTGGTTCACTGGCTGGCAAGTCTGGGCAGTCTGCCACCACTAGCCTTCCTCCAATCAGTGCTGTTCGATTGGAACAGATGAGCAAAGCGGTAAGATGGCTCGTGATTGAGTTGCAGCACGGCTCAGGAGCTGCTGCTTCTGCTTCAGCACACTCTCATCAGTCTGCTCCTTTTGATGCTAGATTTACTGAGGATGCAACCCAATAGGTACCTATTATCTTTTGAGGTTATAACGTAACAAGTTCTTGTTTTCTGTTTTGCATGAAATGGCTTTTTTGGTTGGCGGTGGAGCGTTTACTGTGTAAGATAATCGGCTTGAGCTTTAACTATACATGAAAAAGCGGATCCATTTGTTCTGTATCTATTGTTAACTAATATAGTTTCATGTTCTTTGTACTTGTTTGTTTTTCTTGGAGGTTTGGTGGGGAGAAATTGTCTCTAGTATATATACTAATGTGGGGATTCAAAACTAAGGTGTCTCCAGTTTGTGGATTTGATTTCATTTGTGTTATTAAAATGCATAGAAAAATATTTCTATTTAACATTTAGTTTAGGGGTAATTTGAGAGAGTATTATGCAAGATTATAATAATCACGTGCAGCCACCGTAAACCCCTCATTTGCTGTGTACTATTTGTTACACTTTTTGCTAATTGATATTCATCTTTTCTTTATTATTTGATACAATGTTTACTATTTCCTTTCCAAACTAAA

mRNA sequence

ATGGATGAGGCTCGATTGTTCGAAGCGACAGAGAAACTGAGAGATGCAGCACAGCGCCGCCCACGCACGTCGCCGCCGCTCCGCTGCTGCACCTCCGTCCAACATTCATCCAGCCTCCGTAGTCTTGTGCCGGTATCTGATATGGACAGCCTAGTGGACTCTTTAAATAACGCATATCAGGAGTTTGTTGCTGGAGCAGCTAATGTTCTTGAAGCAAATGAAGCCTCTGGGGCTCAGAAGACAGCAGCAACAGATGCCGCTCTTGAGAATTTTAAACAAAAATGGGAGCTATTCAGGGTTGCTTGTGATCAAGCAGAGGAGTTTGTAGAGTCTGTGAAGCAAAGGATAGGATCAGAGTGCCTTGTTGACGAGGCCACTGGTTCACTGGCTGGCAAGTCTGGGCAGTCTGCCACCACTAGCCTTCCTCCAATCAGTGCTGTTCGATTGGAACAGATGAGCAAAGCGGTAAGATGGCTCGTGATTGAGTTGCAGCACGGCTCAGGAGCTGCTGCTTCTGCTTCAGCACACTCTCATCAGTCTGCTCCTTTTGATGCTAGATTTACTGAGGATGCAACCCAATAGGTACCTATTATCTTTTGAGGTTATAACGTAACAAGTTCTTGTTTTCTGTTTTGCATGAAATGGCTTTTTTGGTTGGCGGTGGAGCGTTTACTGTGTAAGATAATCGGCTTGAGCTTTAACTATACATGAAAAAGCGGATCCATTTGTTCTGTATCTATTGTTAACTAATATAGTTTCATGTTCTTTGTACTTGTTTGTTTTTCTTGGAGGTTTGGTGGGGAGAAATTGTCTCTAGTATATATACTAATGTGGGGATTCAAAACTAAGGTGTCTCCAGTTTGTGGATTTGATTTCATTTGTGTTATTAAAATGCATAGAAAAATATTTCTATTTAACATTTAGTTTAGGGGTAATTTGAGAGAGTATTATGCAAGATTATAATAATCACGTGCAGCCACCGTAAACCCCTCATTTGCTGTGTACTATTTGTTACACTTTTTGCTAATTGATATTCATCTTTTCTTTATTATTTGATACAATGTTTACTATTTCCTTTCCAAACTAAA

Coding sequence (CDS)

ATGGATGAGGCTCGATTGTTCGAAGCGACAGAGAAACTGAGAGATGCAGCACAGCGCCGCCCACGCACGTCGCCGCCGCTCCGCTGCTGCACCTCCGTCCAACATTCATCCAGCCTCCGTAGTCTTGTGCCGGTATCTGATATGGACAGCCTAGTGGACTCTTTAAATAACGCATATCAGGAGTTTGTTGCTGGAGCAGCTAATGTTCTTGAAGCAAATGAAGCCTCTGGGGCTCAGAAGACAGCAGCAACAGATGCCGCTCTTGAGAATTTTAAACAAAAATGGGAGCTATTCAGGGTTGCTTGTGATCAAGCAGAGGAGTTTGTAGAGTCTGTGAAGCAAAGGATAGGATCAGAGTGCCTTGTTGACGAGGCCACTGGTTCACTGGCTGGCAAGTCTGGGCAGTCTGCCACCACTAGCCTTCCTCCAATCAGTGCTGTTCGATTGGAACAGATGAGCAAAGCGGTAAGATGGCTCGTGATTGAGTTGCAGCACGGCTCAGGAGCTGCTGCTTCTGCTTCAGCACACTCTCATCAGTCTGCTCCTTTTGATGCTAGATTTACTGAGGATGCAACCCAATAG

Protein sequence

MDEARLFEATEKLRDAAQRRPRTSPPLRCCTSVQHSSSLRSLVPVSDMDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQSATTSLPPISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFTEDATQ
Homology
[Close]
BLAST of CsGy2G012060 vs. NCBI nr
Match: XP_004148855.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 32 [Cucumis sativus] >KGN61780.1 hypothetical protein Csa_2G245440 [Cucumis sativus])

HSP 1 Score: 253.1 bits (645), Expect = 7.8e-64
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0 

Query: 48  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 107
           MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60

Query: 108 FVESVKQRIGSECLVDEATGSLAGKSGQSATTSLPPISAVRLEQMSKAVRWLVIELQHGS 167
           FVESVKQRIGSECLVDEATGSLAGKSGQSATTSLPPISAVRLEQMSKAVRWLVIELQHGS
Sbjct: 61  FVESVKQRIGSECLVDEATGSLAGKSGQSATTSLPPISAVRLEQMSKAVRWLVIELQHGS 120

Query: 168 XXXXXXXXXXXQSAPFDARFTEDATQ 194
           XXXXXXXXXXXQSAPFDARFTEDATQ
Sbjct: 121 XXXXXXXXXXXQSAPFDARFTEDATQ 146

[Close]
BLAST of CsGy2G012060 vs. NCBI nr
Match: XP_008457936.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 32 [Cucumis melo])

HSP 1 Score: 248.4 bits (633), Expect = 1.9e-62
Identity = 143/146 (97.95%), Postives = 143/146 (97.95%), Query Frame = 0 

Query: 48  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 107
           MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60

Query: 108 FVESVKQRIGSECLVDEATGSLAGKSGQSATTSLPPISAVRLEQMSKAVRWLVIELQHGS 167
           FVESVKQRIGSECLVDEATGSLAGKSGQS TT LPPISAVRLEQMSKAVRWLVIELQHGS
Sbjct: 61  FVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAVRLEQMSKAVRWLVIELQHGS 120

Query: 168 XXXXXXXXXXXQSAPFDARFTEDATQ 194
           XXXXXXXXXXXQSAPFDARFTED TQ
Sbjct: 121 XXXXXXXXXXXQSAPFDARFTEDTTQ 146

[Close]
BLAST of CsGy2G012060 vs. NCBI nr
Match: XP_022986620.1 (mediator of RNA polymerase II transcription subunit 32-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 245.4 bits (625), Expect = 1.6e-61
Identity = 145/156 (92.95%), Postives = 150/156 (96.15%), Query Frame = 0 

Query: 41  SLVPVSDMDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRV 100
           +L+PVSDMDSLVDSLNNAYQEFV+GAANVLEANEASGAQKTAATDAALENFKQKWELFRV
Sbjct: 17  NLLPVSDMDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRV 76

Query: 101 ACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQSA--TTSLPPISAVRLEQMSKAVRW 160
           ACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQ+A  TT LPPISA+RLEQMSKAVRW
Sbjct: 77  ACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAAATTTGLPPISAIRLEQMSKAVRW 136

Query: 161 LVIELQHG-SXXXXXXXXXXXQSAPFDARFTEDATQ 194
           LVIELQHG  XXXXXXXXXXX SAPFDARFTEDATQ
Sbjct: 137 LVIELQHGXXXXXXXXXXXXXPSAPFDARFTEDATQ 172

[Close]
BLAST of CsGy2G012060 vs. NCBI nr
Match: XP_022986622.1 (mediator of RNA polymerase II transcription subunit 32-like isoform X2 [Cucurbita maxima] >XP_022986623.1 mediator of RNA polymerase II transcription subunit 32-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 235.0 bits (598), Expect = 2.2e-58
Identity = 140/149 (93.96%), Postives = 143/149 (95.97%), Query Frame = 0 

Query: 48  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 107
           MDSLVDSLNNAYQEFV+GAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 1   MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60

Query: 108 FVESVKQRIGSECLVDEATGSLAGKSGQSA--TTSLPPISAVRLEQMSKAVRWLVIELQH 167
           FVESVKQRIGSECLVDEATGSLAGKSGQ+A  TT LPPISA+RLEQMSKAVRWLVIELQH
Sbjct: 61  FVESVKQRIGSECLVDEATGSLAGKSGQAAATTTGLPPISAIRLEQMSKAVRWLVIELQH 120

Query: 168 G-SXXXXXXXXXXXQSAPFDARFTEDATQ 194
           G  XXXXXXXXXXX SAPFDARFTEDATQ
Sbjct: 121 GXXXXXXXXXXXXXPSAPFDARFTEDATQ 149

[Close]
BLAST of CsGy2G012060 vs. NCBI nr
Match: XP_022944394.1 (mediator of RNA polymerase II transcription subunit 32-like [Cucurbita moschata] >XP_022944395.1 mediator of RNA polymerase II transcription subunit 32-like [Cucurbita moschata] >XP_022944396.1 mediator of RNA polymerase II transcription subunit 32-like [Cucurbita moschata])

HSP 1 Score: 234.6 bits (597), Expect = 2.9e-58
Identity = 141/151 (93.38%), Postives = 143/151 (94.70%), Query Frame = 0 

Query: 48  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 107
           MDSLVDSLNNAYQEFV+GAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 1   MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60

Query: 108 FVESVKQRIGSECLVDEATGSLAGKSGQSA--TTSLPPISAVRLEQMSKAVRWLVIELQH 167
           FVESVKQRIGSECLVDEATGSLAGKSGQ+A  TT LPPISAVRLEQMSKAVRWLVIELQH
Sbjct: 61  FVESVKQRIGSECLVDEATGSLAGKSGQAAATTTGLPPISAVRLEQMSKAVRWLVIELQH 120

Query: 168 G---SXXXXXXXXXXXQSAPFDARFTEDATQ 194
           G    XXXXXXXXXXX SAPFDARFTEDATQ
Sbjct: 121 GXXXXXXXXXXXXXXXXSAPFDARFTEDATQ 151

[Close]
BLAST of CsGy2G012060 vs. TAIR10
Match: AT1G11760.1 (MED32)

HSP 1 Score: 177.6 bits (449), Expect = 7.6e-45
Identity = 98/153 (64.05%), Postives = 113/153 (73.86%), Query Frame = 0 

Query: 48  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 107
           MD++VDSLN AY++FV  +A VLE+ E++G QK   TD ALENFK+KWELFRVACDQAEE
Sbjct: 1   MDNIVDSLNKAYEKFVLASAGVLESKESAGGQKALLTDTALENFKEKWELFRVACDQAEE 60

Query: 108 FVESVKQRIGSECLVDEATGSLAGKSG-------QSATTSLPPISAVRLEQMSKAVRWLV 167
           FVESVKQRIGSECLVDEATG     +G         A TSLPPISAVRLEQMS+AVRWLV
Sbjct: 61  FVESVKQRIGSECLVDEATGLTTTAAGGQAPAAVTGAATSLPPISAVRLEQMSRAVRWLV 120

Query: 168 IELQHGSXXXXXXXXXXXQSAPFDARFTEDATQ 194
           +ELQ GS            S  FD+RF+ED+TQ
Sbjct: 121 LELQRGS--GVAPGSVHSSSTGFDSRFSEDSTQ 151

[Close]
BLAST of CsGy2G012060 vs. Swiss-Prot
Match: sp|Q84VW5|MED32_ARATH (Mediator of RNA polymerase II transcription subunit 32 OS=Arabidopsis thaliana OX=3702 GN=MED32 PE=1 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.4e-43
Identity = 98/153 (64.05%), Postives = 113/153 (73.86%), Query Frame = 0 

Query: 48  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 107
           MD++VDSLN AY++FV  +A VLE+ E++G QK   TD ALENFK+KWELFRVACDQAEE
Sbjct: 1   MDNIVDSLNKAYEKFVLASAGVLESKESAGGQKALLTDTALENFKEKWELFRVACDQAEE 60

Query: 108 FVESVKQRIGSECLVDEATGSLAGKSG-------QSATTSLPPISAVRLEQMSKAVRWLV 167
           FVESVKQRIGSECLVDEATG     +G         A TSLPPISAVRLEQMS+AVRWLV
Sbjct: 61  FVESVKQRIGSECLVDEATGLTTTAAGGQAPAAVTGAATSLPPISAVRLEQMSRAVRWLV 120

Query: 168 IELQHGSXXXXXXXXXXXQSAPFDARFTEDATQ 194
           +ELQ GS            S  FD+RF+ED+TQ
Sbjct: 121 LELQRGS--GVAPGSVHSSSTGFDSRFSEDSTQ 151

[Close]
BLAST of CsGy2G012060 vs. TrEMBL
Match: tr|A0A0A0LIN7|A0A0A0LIN7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G245440 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 5.2e-64
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0 

Query: 48  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 107
           MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60

Query: 108 FVESVKQRIGSECLVDEATGSLAGKSGQSATTSLPPISAVRLEQMSKAVRWLVIELQHGS 167
           FVESVKQRIGSECLVDEATGSLAGKSGQSATTSLPPISAVRLEQMSKAVRWLVIELQHGS
Sbjct: 61  FVESVKQRIGSECLVDEATGSLAGKSGQSATTSLPPISAVRLEQMSKAVRWLVIELQHGS 120

Query: 168 XXXXXXXXXXXQSAPFDARFTEDATQ 194
           XXXXXXXXXXXQSAPFDARFTEDATQ
Sbjct: 121 XXXXXXXXXXXQSAPFDARFTEDATQ 146

[Close]
BLAST of CsGy2G012060 vs. TrEMBL
Match: tr|A0A1S3C6T6|A0A1S3C6T6_CUCME (mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo OX=3656 GN=LOC103497499 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.3e-62
Identity = 143/146 (97.95%), Postives = 143/146 (97.95%), Query Frame = 0 

Query: 48  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 107
           MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60

Query: 108 FVESVKQRIGSECLVDEATGSLAGKSGQSATTSLPPISAVRLEQMSKAVRWLVIELQHGS 167
           FVESVKQRIGSECLVDEATGSLAGKSGQS TT LPPISAVRLEQMSKAVRWLVIELQHGS
Sbjct: 61  FVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAVRLEQMSKAVRWLVIELQHGS 120

Query: 168 XXXXXXXXXXXQSAPFDARFTEDATQ 194
           XXXXXXXXXXXQSAPFDARFTED TQ
Sbjct: 121 XXXXXXXXXXXQSAPFDARFTEDTTQ 146

[Close]
BLAST of CsGy2G012060 vs. TrEMBL
Match: tr|A0A2I4GYT8|A0A2I4GYT8_9ROSI (mediator of RNA polymerase II transcription subunit 32 isoform X3 OS=Juglans regia OX=51240 GN=LOC109012066 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 8.8e-56
Identity = 121/146 (82.88%), Postives = 126/146 (86.30%), Query Frame = 0 

Query: 48  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 107
           MD++VDSLNNAYQEFV  AANVLEA E SGAQKTAATDAALENFKQ+WELFRVACDQAEE
Sbjct: 1   MDNMVDSLNNAYQEFVVAAANVLEAKEVSGAQKTAATDAALENFKQRWELFRVACDQAEE 60

Query: 108 FVESVKQRIGSECLVDEATGSLAGKSGQSATTSLPPISAVRLEQMSKAVRWLVIELQHGS 167
           FVESVKQRIGSECLVDEATGSLAGK GQ+ATT LPPISAVRLEQMSKAVRWLVIELQHGS
Sbjct: 61  FVESVKQRIGSECLVDEATGSLAGKPGQAATTGLPPISAVRLEQMSKAVRWLVIELQHGS 120

Query: 168 XXXXXXXXXXXQSAPFDARFTEDATQ 194
                        APFDARF+EDA Q
Sbjct: 121 ---GTGASHSHPPAPFDARFSEDAAQ 143

[Close]
BLAST of CsGy2G012060 vs. TrEMBL
Match: tr|A0A2I4GYU4|A0A2I4GYU4_9ROSI (mediator of RNA polymerase II transcription subunit 32 isoform X2 OS=Juglans regia OX=51240 GN=LOC109012066 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 8.8e-56
Identity = 121/146 (82.88%), Postives = 126/146 (86.30%), Query Frame = 0 

Query: 48  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 107
           MD++VDSLNNAYQEFV  AANVLEA E SGAQKTAATDAALENFKQ+WELFRVACDQAEE
Sbjct: 8   MDNMVDSLNNAYQEFVVAAANVLEAKEVSGAQKTAATDAALENFKQRWELFRVACDQAEE 67

Query: 108 FVESVKQRIGSECLVDEATGSLAGKSGQSATTSLPPISAVRLEQMSKAVRWLVIELQHGS 167
           FVESVKQRIGSECLVDEATGSLAGK GQ+ATT LPPISAVRLEQMSKAVRWLVIELQHGS
Sbjct: 68  FVESVKQRIGSECLVDEATGSLAGKPGQAATTGLPPISAVRLEQMSKAVRWLVIELQHGS 127

Query: 168 XXXXXXXXXXXQSAPFDARFTEDATQ 194
                        APFDARF+EDA Q
Sbjct: 128 ---GTGASHSHPPAPFDARFSEDAAQ 150

[Close]
BLAST of CsGy2G012060 vs. TrEMBL
Match: tr|A0A2I4GYU5|A0A2I4GYU5_9ROSI (mediator of RNA polymerase II transcription subunit 32 isoform X1 OS=Juglans regia OX=51240 GN=LOC109012066 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 8.8e-56
Identity = 121/146 (82.88%), Postives = 126/146 (86.30%), Query Frame = 0 

Query: 48  MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 107
           MD++VDSLNNAYQEFV  AANVLEA E SGAQKTAATDAALENFKQ+WELFRVACDQAEE
Sbjct: 13  MDNMVDSLNNAYQEFVVAAANVLEAKEVSGAQKTAATDAALENFKQRWELFRVACDQAEE 72

Query: 108 FVESVKQRIGSECLVDEATGSLAGKSGQSATTSLPPISAVRLEQMSKAVRWLVIELQHGS 167
           FVESVKQRIGSECLVDEATGSLAGK GQ+ATT LPPISAVRLEQMSKAVRWLVIELQHGS
Sbjct: 73  FVESVKQRIGSECLVDEATGSLAGKPGQAATTGLPPISAVRLEQMSKAVRWLVIELQHGS 132

Query: 168 XXXXXXXXXXXQSAPFDARFTEDATQ 194
                        APFDARF+EDA Q
Sbjct: 133 ---GTGASHSHPPAPFDARFSEDAAQ 155

The following BLAST results are available for this feature:
BLAST of CsGy2G012060 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004148855.17.8e-64100.00PREDICTED: mediator of RNA polymerase II transcription subunit 32 [Cucumis sativ... [more]
XP_008457936.11.9e-6297.95PREDICTED: mediator of RNA polymerase II transcription subunit 32 [Cucumis melo][more]
XP_022986620.11.6e-6192.95mediator of RNA polymerase II transcription subunit 32-like isoform X1 [Cucurbit... [more]
XP_022986622.12.2e-5893.96mediator of RNA polymerase II transcription subunit 32-like isoform X2 [Cucurbit... [more]
XP_022944394.12.9e-5893.38mediator of RNA polymerase II transcription subunit 32-like [Cucurbita moschata]... [more]
BLAST of CsGy2G012060 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G11760.17.6e-4564.05MED32[more]
BLAST of CsGy2G012060 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q84VW5|MED32_ARATH1.4e-4364.05Mediator of RNA polymerase II transcription subunit 32 OS=Arabidopsis thaliana O... [more]
BLAST of CsGy2G012060 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LIN7|A0A0A0LIN7_CUCSA5.2e-64100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G245440 PE=4 SV=1[more]
tr|A0A1S3C6T6|A0A1S3C6T6_CUCME1.3e-6297.95mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo OX=3656 G... [more]
tr|A0A2I4GYT8|A0A2I4GYT8_9ROSI8.8e-5682.88mediator of RNA polymerase II transcription subunit 32 isoform X3 OS=Juglans reg... [more]
tr|A0A2I4GYU4|A0A2I4GYU4_9ROSI8.8e-5682.88mediator of RNA polymerase II transcription subunit 32 isoform X2 OS=Juglans reg... [more]
tr|A0A2I4GYU5|A0A2I4GYU5_9ROSI8.8e-5682.88mediator of RNA polymerase II transcription subunit 32 isoform X1 OS=Juglans reg... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0009631cold acclimation
GO:0006355regulation of transcription, DNA-templated
GO:0010150leaf senescence
GO:0048364root development
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
Vocabulary: INTERPRO
TermDefinition
IPR033244MED32
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009631 cold acclimation
biological_process GO:0010150 leaf senescence
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0048364 root development
cellular_component GO:0016592 mediator complex
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy2G012060.1CsGy2G012060.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 172..193
IPR033244Mediator of RNA polymerase II transcription subunit 32PANTHERPTHR35989FAMILY NOT NAMEDcoord: 48..193

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy2G012060Cla016549Watermelon (97103) v1cgybwmB147
CsGy2G012060Csa2G245440Cucumber (Chinese Long) v2cgybcuB056
CsGy2G012060MELO3C020986Melon (DHL92) v3.5.1cgybmeB082
CsGy2G012060ClCG11G004520Watermelon (Charleston Gray)cgybwcgB103
CsGy2G012060CSPI02G12070Wild cucumber (PI 183967)cgybcpiB056
CsGy2G012060CmaCh20G008600Cucurbita maxima (Rimu)cgybcmaB218
CsGy2G012060CmaCh02G004110Cucurbita maxima (Rimu)cgybcmaB229
CsGy2G012060CmoCh20G008700Cucurbita moschata (Rifu)cgybcmoB209
CsGy2G012060CmoCh02G004150Cucurbita moschata (Rifu)cgybcmoB220
CsGy2G012060Lsi10G003520Bottle gourd (USVL1VR-Ls)cgyblsiB086
CsGy2G012060Cp4.1LG05g12460Cucurbita pepo (Zucchini)cgybcpeB240
CsGy2G012060MELO3C020986.2Melon (DHL92) v3.6.1cgybmedB078
CsGy2G012060CsaV3_2G014570Cucumber (Chinese Long) v3cgybcucB064
CsGy2G012060Cla97C11G211280Watermelon (97103) v2cgybwmbB105
CsGy2G012060Bhi10G001633Wax gourdcgybwgoB175
CsGy2G012060Carg23639Silver-seed gourdcarcgybB0786
CsGy2G012060Carg22954Silver-seed gourdcarcgybB0879
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy2G012060Wax gourdcgybwgoB142
CsGy2G012060Cucumber (Gy14) v2cgybcgybB076
CsGy2G012060Cucurbita maxima (Rimu)cgybcmaB212
CsGy2G012060Cucurbita moschata (Rifu)cgybcmoB202
CsGy2G012060Cucurbita pepo (Zucchini)cgybcpeB185
CsGy2G012060Cucurbita pepo (Zucchini)cgybcpeB193
CsGy2G012060Cucumber (Chinese Long) v2cgybcuB092
CsGy2G012060Bottle gourd (USVL1VR-Ls)cgyblsiB090
CsGy2G012060Melon (DHL92) v3.6.1cgybmedB083
CsGy2G012060Watermelon (Charleston Gray)cgybwcgB089
CsGy2G012060Watermelon (Charleston Gray)cgybwcgB122
CsGy2G012060Watermelon (97103) v1cgybwmB099
CsGy2G012060Watermelon (97103) v1cgybwmB141
CsGy2G012060Wild cucumber (PI 183967)cgybcpiB092
CsGy2G012060Cucumber (Chinese Long) v3cgybcucB097
CsGy2G012060Watermelon (97103) v2cgybwmbB117