Carg23509 (gene) Silver-seed gourd

Overview
NameCarg23509
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionNon-specific lipid-transfer protein-like protein
LocationCucurbita_argyrosperma_scaffold_278 : 111449 .. 112169 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACACACAAAGATGGTGATGACTCTAGTTGCGGTTATTGTTGCCGTGCACTGGGCAGGAGCAGCCGCACAGTCGGACTGTACAAATGTGCTGATCAGCTTGTCTCCATGCTTGAATTACATTACAGGGAATTCCTCTACCCCATCACAAGCATGCTGCACACAGCTTGCCAGTGTTGTCCGTTCACAACCACAATGCTTGTGCCAGGTCCTGAATGGTGGTGGCTCGTCGCTTGGGATCAATATCAACCAAACCCAGGCCCTGGCTCTTCCCCGAGTTTGCAATGTTCAGACTCCTTCCATCAGCAGCTGCAATGGTAAGAATTCAAGTGGAAAATTTATGGGCACTACTGCACATTAAGAATGAGCAGGAGGATTATTTATGAACTAATATCAATCTCTATCTAAAGCGCTAACTTGTAATACCTGAAAATTGTCAGTTGCTACTCCCACCGGCTCTCCAGCAGGAGCACCAGAATCTTCAAACAACGTTCCTTCAGGTAAGAACAAAACAGACGCTTAACTGTATGCTCTATCAGTTTGTTCATACGGCAACTACACAATTAAAATACCTTACTGCTTGTGCAGGACCTGGATCAAAGACTGTTCCATCAACAGACAATGACTCATCAGACGGAACCTCGAACACTTTGTCAAAACCTCTACTATTCTCCATCTTGTTGGCTTCTGCATATGCTTCAGCTTTCAAGTTGTACTGA

mRNA sequence

ATGGAACACACAAAGATGGTGATGACTCTAGTTGCGGTTATTGTTGCCGTGCACTGGGCAGGAGCAGCCGCACAGTCGGACTGTACAAATGTGCTGATCAGCTTGTCTCCATGCTTGAATTACATTACAGGGAATTCCTCTACCCCATCACAAGCATGCTGCACACAGCTTGCCAGTGTTGTCCGTTCACAACCACAATGCTTGTGCCAGGTCCTGAATGGTGGTGGCTCGTCGCTTGGGATCAATATCAACCAAACCCAGGCCCTGGCTCTTCCCCGAGTTTGCAATGTTCAGACTCCTTCCATCAGCAGCTGCAATGTTGCTACTCCCACCGGCTCTCCAGCAGGAGCACCAGAATCTTCAAACAACGTTCCTTCAGGACCTGGATCAAAGACTGTTCCATCAACAGACAATGACTCATCAGACGGAACCTCGAACACTTTGTCAAAACCTCTACTATTCTCCATCTTGTTGGCTTCTGCATATGCTTCAGCTTTCAAGTTGTACTGA

Coding sequence (CDS)

ATGGAACACACAAAGATGGTGATGACTCTAGTTGCGGTTATTGTTGCCGTGCACTGGGCAGGAGCAGCCGCACAGTCGGACTGTACAAATGTGCTGATCAGCTTGTCTCCATGCTTGAATTACATTACAGGGAATTCCTCTACCCCATCACAAGCATGCTGCACACAGCTTGCCAGTGTTGTCCGTTCACAACCACAATGCTTGTGCCAGGTCCTGAATGGTGGTGGCTCGTCGCTTGGGATCAATATCAACCAAACCCAGGCCCTGGCTCTTCCCCGAGTTTGCAATGTTCAGACTCCTTCCATCAGCAGCTGCAATGTTGCTACTCCCACCGGCTCTCCAGCAGGAGCACCAGAATCTTCAAACAACGTTCCTTCAGGACCTGGATCAAAGACTGTTCCATCAACAGACAATGACTCATCAGACGGAACCTCGAACACTTTGTCAAAACCTCTACTATTCTCCATCTTGTTGGCTTCTGCATATGCTTCAGCTTTCAAGTTGTACTGA

Protein sequence

MEHTKMVMTLVAVIVAVHWAGAAAQSDCTNVLISLSPCLNYITGNSSTPSQACCTQLASVVRSQPQCLCQVLNGGGSSLGININQTQALALPRVCNVQTPSISSCNVATPTGSPAGAPESSNNVPSGPGSKTVPSTDNDSSDGTSNTLSKPLLFSILLASAYASAFKLY
Homology
[Close]
BLAST of Carg23509 vs. NCBI nr
Match: XP_022979471.1 (non-specific lipid-transfer protein-like protein At2g13820 [Cucurbita maxima])

HSP 1 Score: 319.3 bits (817), Expect = 7.8e-84
Identity = 168/169 (99.41%), Postives = 168/169 (99.41%), Query Frame = 0 

Query: 1   MEHTKMVMTLVAVIVAVHWAGAAAQSDCTNVLISLSPCLNYITGNSSTPSQACCTQLASV 60
           MEHTKMVMTLVAVIVAVHWAGAAAQSDCTNVLISLSPC NYITGNSSTPSQACCTQLASV
Sbjct: 1   MEHTKMVMTLVAVIVAVHWAGAAAQSDCTNVLISLSPCFNYITGNSSTPSQACCTQLASV 60

Query: 61  VRSQPQCLCQVLNGGGSSLGININQTQALALPRVCNVQTPSISSCNVATPTGSPAGAPES 120
           VRSQPQCLCQVLNGGGSSLGININQTQALALPRVCNVQTPSISSCNVATPTGSPAGAPES
Sbjct: 61  VRSQPQCLCQVLNGGGSSLGININQTQALALPRVCNVQTPSISSCNVATPTGSPAGAPES 120

Query: 121 SNNVPSGPGSKTVPSTDNDSSDGTSNTLSKPLLFSILLASAYASAFKLY 170
           SNNVPSGPGSKTVPSTDNDSSDGTSNTLSKPLLFSILLASAYASAFKLY
Sbjct: 121 SNNVPSGPGSKTVPSTDNDSSDGTSNTLSKPLLFSILLASAYASAFKLY 169

[Close]
BLAST of Carg23509 vs. NCBI nr
Match: XP_022955415.1 (non-specific lipid-transfer protein-like protein At2g13820 [Cucurbita moschata])

HSP 1 Score: 307.4 bits (786), Expect = 3.1e-80
Identity = 162/169 (95.86%), Postives = 165/169 (97.63%), Query Frame = 0 

Query: 1   MEHTKMVMTLVAVIVAVHWAGAAAQSDCTNVLISLSPCLNYITGNSSTPSQACCTQLASV 60
           MEHTKMVMTLVAVIVA+HWAGAAAQSDCTNVLISLSPCLNYITGNSSTPSQACCTQLASV
Sbjct: 1   MEHTKMVMTLVAVIVALHWAGAAAQSDCTNVLISLSPCLNYITGNSSTPSQACCTQLASV 60

Query: 61  VRSQPQCLCQVLNGGGSSLGININQTQALALPRVCNVQTPSISSCNVATPTGSPAGAPES 120
           VRSQPQCLCQVLNGGGSSLGININQTQALALPRVCNVQTPSISSCNVATPTGS   APES
Sbjct: 61  VRSQPQCLCQVLNGGGSSLGININQTQALALPRVCNVQTPSISSCNVATPTGSXXXAPES 120

Query: 121 SNNVPSGPGSKTVPSTDNDSSDGTSNTLSKPLLFSILLASAYASAFKLY 170
           SNN+PSG GSKTVPSTDNDSSDGTSNT+SKPLLFSILLASAYASAFKLY
Sbjct: 121 SNNIPSGTGSKTVPSTDNDSSDGTSNTVSKPLLFSILLASAYASAFKLY 169

[Close]
BLAST of Carg23509 vs. NCBI nr
Match: XP_022934392.1 (non-specific lipid-transfer protein-like protein At2g13820 [Cucurbita moschata] >XP_023539478.1 non-specific lipid-transfer protein-like protein At2g13820 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 258.5 bits (659), Expect = 1.6e-65
Identity = 140/169 (82.84%), Postives = 147/169 (86.98%), Query Frame = 0 

Query: 1   MEHTKMVMTLVAVIVAVHWAGAAAQSDCTNVLISLSPCLNYITGNSSTPSQACCTQLASV 60
           M   KMVMTL+AVIVAVHWAGAAAQSDCTNVLISLSPCLNYITGNSSTPSQ CCTQLA+V
Sbjct: 1   MAQGKMVMTLLAVIVAVHWAGAAAQSDCTNVLISLSPCLNYITGNSSTPSQGCCTQLATV 60

Query: 61  VRSQPQCLCQVLNGGGSSLGININQTQALALPRVCNVQTPSISSCNVATPTGSPAGAPES 120
           VRSQPQCLCQVLNGGGSSLG+NINQTQALALP+ CNVQTPSISSCNVA+PT         
Sbjct: 61  VRSQPQCLCQVLNGGGSSLGVNINQTQALALPQACNVQTPSISSCNVASPTXXXXXXXXX 120

Query: 121 SNNVPSGPGSKTVPSTDNDSSDGTSNTLSKPLLFSILLASAYASAFKLY 170
              VPSG GSKTVPS DN+SSDG+S  LSKPLLFSILLAS YASAFKLY
Sbjct: 121 XXXVPSGTGSKTVPSPDNNSSDGSSIHLSKPLLFSILLASTYASAFKLY 169

[Close]
BLAST of Carg23509 vs. NCBI nr
Match: XP_022138181.1 (non-specific lipid-transfer protein-like protein At2g13820 [Momordica charantia])

HSP 1 Score: 256.9 bits (655), Expect = 4.7e-65
Identity = 142/166 (85.54%), Postives = 150/166 (90.36%), Query Frame = 0 

Query: 5   KMVMTLVAVIVAVHWAGAAAQSDCTNVLISLSPCLNYITGNSSTPSQACCTQLASVVRSQ 64
           KMVMTL+ V+VAV+WAGAAAQSDCTNVLISLSPCLNYITGNSSTPS ACCTQLASVVRSQ
Sbjct: 4   KMVMTLLVVVVAVNWAGAAAQSDCTNVLISLSPCLNYITGNSSTPSSACCTQLASVVRSQ 63

Query: 65  PQCLCQVLNGGGSSLGININQTQALALPRVCNVQTPSISSCNVATPTGSPAGAPESSNNV 124
           P CLCQVLNGGGSSLG+NINQTQALALP+ CNVQTPS+S+C V     SPAGAPESSNNV
Sbjct: 64  PLCLCQVLNGGGSSLGMNINQTQALALPQACNVQTPSVSNCKV----DSPAGAPESSNNV 123

Query: 125 PSGPGSKTVPSTDNDSSDGTSNTLSKP-LLFSILLASAYASAFKLY 170
           PSG GSKTVPSTDNDSSDG+S   SK  LLFSILLASAYASAFKLY
Sbjct: 124 PSGTGSKTVPSTDNDSSDGSSIHSSKSLLLFSILLASAYASAFKLY 165

[Close]
BLAST of Carg23509 vs. NCBI nr
Match: XP_022974389.1 (non-specific lipid-transfer protein-like protein At2g13820 [Cucurbita maxima] >XP_022975120.1 non-specific lipid-transfer protein-like protein At2g13820 [Cucurbita maxima] >XP_022975476.1 non-specific lipid-transfer protein-like protein At2g13820 isoform X1 [Cucurbita maxima])

HSP 1 Score: 256.5 bits (654), Expect = 6.2e-65
Identity = 139/169 (82.25%), Postives = 146/169 (86.39%), Query Frame = 0 

Query: 1   MEHTKMVMTLVAVIVAVHWAGAAAQSDCTNVLISLSPCLNYITGNSSTPSQACCTQLASV 60
           M   KMVM L+AVIVAVHWAGAAAQSDCTNVLISLSPCLNYITGNSSTPSQ CCTQLA+V
Sbjct: 1   MAQGKMVMALLAVIVAVHWAGAAAQSDCTNVLISLSPCLNYITGNSSTPSQGCCTQLATV 60

Query: 61  VRSQPQCLCQVLNGGGSSLGININQTQALALPRVCNVQTPSISSCNVATPTGSPAGAPES 120
           VRSQPQCLCQVLNGGGSSLG+NINQTQALALP+ CNVQTPSISSCNVA+PT         
Sbjct: 61  VRSQPQCLCQVLNGGGSSLGVNINQTQALALPQACNVQTPSISSCNVASPTXXXXXXXXX 120

Query: 121 SNNVPSGPGSKTVPSTDNDSSDGTSNTLSKPLLFSILLASAYASAFKLY 170
              VPSG GSKTVPS DN+SSDG+S  LSKPLLFSILLAS YASAFKLY
Sbjct: 121 XXXVPSGTGSKTVPSPDNNSSDGSSIHLSKPLLFSILLASTYASAFKLY 169

[Close]
BLAST of Carg23509 vs. TAIR10
Match: AT3G22600.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 136.7 bits (343), Expect = 1.3e-32
Identity = 69/105 (65.71%), Postives = 80/105 (76.19%), Query Frame = 0 

Query: 5   KMVMTLVAVIV---AVHWAGAAAQSDCTNVLISLSPCLNYITGNSSTPSQACCTQLASVV 64
           KM M LV + V    +     +AQS CTN LIS+SPCLNYITGNS++P+Q CC QL+ VV
Sbjct: 2   KMEMGLVFLTVFMAVMSSTMVSAQSSCTNALISMSPCLNYITGNSTSPNQQCCNQLSRVV 61

Query: 65  RSQPQCLCQVLNGGGSSLGININQTQALALPRVCNVQTPSISSCN 107
           +S P CLCQVLNGGGS LGIN+NQTQAL LPR CNVQTP +S CN
Sbjct: 62  QSSPDCLCQVLNGGGSQLGINVNQTQALGLPRACNVQTPPVSRCN 106

[Close]
BLAST of Carg23509 vs. TAIR10
Match: AT4G14815.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 126.7 bits (317), Expect = 1.3e-29
Identity = 76/140 (54.29%), Postives = 96/140 (68.57%), Query Frame = 0 

Query: 23  AAQSDCTNVLISLSPCLNYITGNSSTPSQACCTQLASVVRSQPQCLCQVLNGGGSSLGIN 82
           +AQS CTNVLIS++PCL++IT N+S PSQ CC QLA VVR   +CLCQVL+GGGS LGIN
Sbjct: 21  SAQSSCTNVLISMAPCLSFITQNTSLPSQQCCNQLAHVVRYSSECLCQVLDGGGSQLGIN 80

Query: 83  INQTQALALPRVCNVQTPSISSCNVATPTGSPAGAPESSNNVPSGPGSKTVPSTDNDSSD 142
           +N+TQALALP+ C+V+TP  S C+  +   S         +   G GSKTVP  +  SSD
Sbjct: 81  VNETQALALPKACHVETPPASRCHSGSSVNS---------HSEHGNGSKTVP-REKSSSD 140

Query: 143 GTSNTLSKPLLFSILLASAY 163
           G S   S PLL +IL  ++Y
Sbjct: 141 G-SIKFSFPLL-AILFTASY 148

[Close]
BLAST of Carg23509 vs. TAIR10
Match: AT2G48130.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 118.6 bits (296), Expect = 3.7e-27
Identity = 75/170 (44.12%), Postives = 103/170 (60.59%), Query Frame = 0 

Query: 8   MTLVAVIVAVHWAGAAAQ--SDCTNVLISLSPCLNYITGNSSTPSQACCTQLASVVRSQP 67
           +T VA++ A+ W+   AQ  S C + L +LSPCL+YITGNS+TPSQ CC++L SV++S P
Sbjct: 9   ITFVALVAAL-WSVTKAQPSSSCVSTLTTLSPCLSYITGNSTTPSQPCCSRLDSVIKSSP 68

Query: 68  QCLCQVLNGGGSSLGININQTQALALPRVCNVQTPSISSCNVAT-PTGSPAGAPESSNNV 127
           QC+C  +N    ++G+NIN+TQAL LP  CN+QTP ++ CN AT PT  P  AP  +   
Sbjct: 69  QCICSAVNSPIPNIGLNINRTQALQLPNACNIQTPPLTQCNAATGPTAQPP-APSPTEKT 128

Query: 128 PS---------------GPGSKTVPSTDNDSSDGTSNTLSKP-LLFSILL 159
           P                G GSKTVPS    SS    + L    L+F++L+
Sbjct: 129 PDVTLTPTSLPGARSGVGGGSKTVPSVGTGSSSRNVDPLPLHFLMFAVLV 176

[Close]
BLAST of Carg23509 vs. TAIR10
Match: AT1G03103.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 98.2 bits (243), Expect = 5.1e-21
Identity = 51/104 (49.04%), Postives = 69/104 (66.35%), Query Frame = 0 

Query: 6   MVMTLVAVIVAVHWAGAA--AQSDCTNVLISLSPCLNYITGNSSTPSQACCTQLASVVRS 65
           M++ ++A+++A    G A   Q+ C + L SLSPCL Y+ G SS+PS +CC Q ++VV+S
Sbjct: 1   MILAILALVIATFLYGGATTVQAGCRDTLTSLSPCLYYLNGGSSSPSWSCCRQFSTVVQS 60

Query: 66  QPQCLCQVLNGGGSSL-GININQTQALALPRVCNVQTPSISSCN 107
            P+CLC V+N   SS  G   N+T AL LP  CNVQTPS S CN
Sbjct: 61  SPECLCSVVNSNESSFYGFKFNRTLALNLPTACNVQTPSPSLCN 104

[Close]
BLAST of Carg23509 vs. TAIR10
Match: AT3G43720.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 71.2 bits (173), Expect = 6.7e-13
Identity = 59/166 (35.54%), Postives = 85/166 (51.20%), Query Frame = 0 

Query: 20  AGAAAQSDCTNVLISLSPCLNYIT----GNSSTPSQACCTQLASVVRSQPQCLCQVLNGG 79
           +G +   DC   L++++ CL+Y+T    G ++ P + CC  LA +V S PQCLC +L+G 
Sbjct: 30  SGPSGAPDCMANLMNMTGCLSYVTVGEGGGAAKPDKTCCPALAGLVESSPQCLCYLLSGD 89

Query: 80  -GSSLGININQTQALALPRVCNVQTPSISSCNV-ATPTG----------SPAGAPESSNN 139
             + LGI I++ +AL LP VC V TP  S C++   P G          SPA AP S + 
Sbjct: 90  MAAQLGIKIDKAKALKLPGVCGVITPDPSLCSLFGIPVGAPVAMGDEGASPAYAPGSMSG 149

Query: 140 VPSGPGSKTVPSTDNDSSDGTSNTLSKPLLFSILLASAYASAFKLY 170
             S  G  + PS    S   +S   S   LF  L+    A AF ++
Sbjct: 150 AESPGGFGSGPSASRGSDAPSSAPYS---LFLNLIIFPLAFAFYIF 192

[Close]
BLAST of Carg23509 vs. Swiss-Prot
Match: sp|Q9LZH5|LTPG2_ARATH (Non-specific lipid transfer protein GPI-anchored 2 OS=Arabidopsis thaliana OX=3702 GN=LTPG2 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-11
Identity = 59/166 (35.54%), Postives = 85/166 (51.20%), Query Frame = 0 

Query: 20  AGAAAQSDCTNVLISLSPCLNYIT----GNSSTPSQACCTQLASVVRSQPQCLCQVLNGG 79
           +G +   DC   L++++ CL+Y+T    G ++ P + CC  LA +V S PQCLC +L+G 
Sbjct: 30  SGPSGAPDCMANLMNMTGCLSYVTVGEGGGAAKPDKTCCPALAGLVESSPQCLCYLLSGD 89

Query: 80  -GSSLGININQTQALALPRVCNVQTPSISSCNV-ATPTG----------SPAGAPESSNN 139
             + LGI I++ +AL LP VC V TP  S C++   P G          SPA AP S + 
Sbjct: 90  MAAQLGIKIDKAKALKLPGVCGVITPDPSLCSLFGIPVGAPVAMGDEGASPAYAPGSMSG 149

Query: 140 VPSGPGSKTVPSTDNDSSDGTSNTLSKPLLFSILLASAYASAFKLY 170
             S  G  + PS    S   +S   S   LF  L+    A AF ++
Sbjct: 150 AESPGGFGSGPSASRGSDAPSSAPYS---LFLNLIIFPLAFAFYIF 192

[Close]
BLAST of Carg23509 vs. Swiss-Prot
Match: sp|Q9ZQI8|NLTL2_ARATH (Non-specific lipid-transfer protein-like protein At2g13820 OS=Arabidopsis thaliana OX=3702 GN=At2g13820 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-11
Identity = 36/114 (31.58%), Postives = 68/114 (59.65%), Query Frame = 0 

Query: 7   VMTLVAVIVAVHWAGAAAQSDCTNVLISLSPCLNYITGNSST--PSQACCTQLASVVRSQ 66
           ++ + +V+  +    A A  DC++++++++ CL+++T  S+   P   CC+ L +VVR+ 
Sbjct: 6   ILMIFSVVALMSGERAHAAVDCSSLILNMADCLSFVTSGSTVVKPEGTCCSGLKTVVRTG 65

Query: 67  PQCLCQVLNGGGSSLGININQTQALALPRVCNVQTPSISSCNVATPTGSPAGAP 119
           P+CLC+     G SLG+ ++ ++A +LP VC V  P  + C ++     PA AP
Sbjct: 66  PECLCEAFKNSG-SLGLTLDLSKAASLPSVCKVAAPPSARCGLSVSGDPPATAP 118

[Close]
BLAST of Carg23509 vs. Swiss-Prot
Match: sp|Q9ZVC7|XYP11_ARATH (Xylogen-like protein 11 OS=Arabidopsis thaliana OX=3702 GN=XYP11 PE=2 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 6.6e-10
Identity = 46/144 (31.94%), Postives = 76/144 (52.78%), Query Frame = 0 

Query: 21  GAAAQSDCTNVLISLSPCLNYIT--GNSSTPSQACCTQLASVVRSQPQCLCQVLNGGGS- 80
           G ++  +C   ++++S C +Y+    N   P  ACC +LA +V+S P+C+C +  GG S 
Sbjct: 33  GPSSPVNCLVSMLNVSDCFSYVQVGSNEIKPEAACCPELAGMVQSSPECVCNLYGGGASP 92

Query: 81  SLGININQTQALALPRVCNVQTPSISSCNV-ATPTGSPAGAPESSNNVPSGPGSKTVPST 140
             G+ +++ +A  L  +C V+ PS S C+V   PT SPAG+ +SS+        K   + 
Sbjct: 93  RFGVKLDKQRAEQLSTICGVKAPSPSLCSVLGFPTISPAGSEDSSSGSEGSDKDKKNGAM 152

Query: 141 DNDSSDGTSNTLSKPLLFSILLAS 161
                    N+L+  LLF+ L  S
Sbjct: 153 TTKYCGVALNSLALLLLFTFLSLS 176

[Close]
BLAST of Carg23509 vs. Swiss-Prot
Match: sp|Q8VYI9|NLTL5_ARATH (Non-specific lipid-transfer protein-like protein At5g64080 OS=Arabidopsis thaliana OX=3702 GN=At5g64080 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.4e-07
Identity = 45/152 (29.61%), Postives = 78/152 (51.32%), Query Frame = 0 

Query: 18  HWAGAAAQS-DCTNVLISLSPCLNYIT--GNSSTPSQACCTQLASVVRSQPQCLCQVLNG 77
           H A A A S DC+ ++++++ CL++++  G  + P   CC+ L +V+++  QCLC+    
Sbjct: 32  HHATAPAPSVDCSTLILNMADCLSFVSSGGTVAKPEGTCCSGLKTVLKADSQCLCEAFK- 91

Query: 78  GGSSLGININQTQALALPRVCNVQTPSISSCNVA-TPTGSPAGAPESSNNVPSGPGSKTV 137
             +SLG+ +N T+A  LP  C +  PSI++C ++  P              P   G    
Sbjct: 92  SSASLGVTLNITKASTLPAACKLHAPSIATCGLSVAPXXXXXXXXXXXXXGPETAGFLAP 151

Query: 138 -PSTDNDSSD---GTSNTLSKPLLFSILLASA 162
            PS+ ND S     +  T+   +LF +  +SA
Sbjct: 152 NPSSGNDGSSLIPTSFTTVLSAVLFVLFFSSA 182

[Close]
BLAST of Carg23509 vs. Swiss-Prot
Match: sp|Q43767|NLT41_HORVU (Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare OX=4513 GN=LTP4.1 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.9e-05
Identity = 35/107 (32.71%), Postives = 51/107 (47.66%), Query Frame = 0 

Query: 8   MTLVAVIVAVHWAGAAAQSDCTNVLISLSPCLNYITGNSSTPSQACCT---QLASVVRS- 67
           + LVA++ A+    A A   C  V  +LSPC++Y  GN + P  ACC+   +LA   +S 
Sbjct: 9   LVLVALVAAMLLVAADAAISCGQVSSALSPCISYARGNGAKPPAACCSGVKRLAGAAQST 68

Query: 68  ---QPQCLCQVLNGGGSSLGININQTQALALPRVCNVQTPSISSCNV 108
              Q  C C     GG      +N  +A  +P +C V  P   S +V
Sbjct: 69  ADKQAACKCIKSAAGG------LNAGKAAGIPSMCGVSVPYAISASV 109

[Close]
BLAST of Carg23509 vs. TrEMBL
Match: tr|A0A2I4G909|A0A2I4G909_9ROSI (non-specific lipid-transfer protein-like protein At2g13820 OS=Juglans regia OX=51240 GN=LOC109005794 PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 1.8e-52
Identity = 114/166 (68.67%), Postives = 133/166 (80.12%), Query Frame = 0 

Query: 1   MEHTKMVMTLVAVIVAVHWAGAAAQSDCTNVLISLSPCLNYITGNSSTPSQACCTQLASV 60
           M   K  M +V V+V + WAGA AQS CTN +ISLSPCLNYITGNSSTPS  CC+QLA+V
Sbjct: 1   MAQGKFEMGVVLVLVTMLWAGAEAQSSCTNEIISLSPCLNYITGNSSTPSSGCCSQLATV 60

Query: 61  VRSQPQCLCQVLNGGGSSLGININQTQALALPRVCNVQTPSISSCNVATPTGSPAGAPES 120
           VRSQPQCLC+V+NGGGSSLGIN+N+TQALALP  CNVQTP +S CN A+P  SPAG P+S
Sbjct: 61  VRSQPQCLCEVINGGGSSLGINVNRTQALALPSACNVQTPPLSRCNAASPADSPAGTPDS 120

Query: 121 SNNVPSGPGSKTVPSTDNDSSDGTSNTLSKPLLFSILLASAYASAF 167
           SN VPSG GSKTVPSTD+ SS G+S  LS   LF +L A+A+AS+F
Sbjct: 121 SNTVPSGGGSKTVPSTDDGSSAGSSIKLSISHLFFLLCAAAFASSF 166

[Close]
BLAST of Carg23509 vs. TrEMBL
Match: tr|A0A061EM78|A0A061EM78_THECC (Non-specific lipid-transfer protein, putative isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_020655 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.3e-50
Identity = 117/169 (69.23%), Postives = 135/169 (79.88%), Query Frame = 0 

Query: 1   MEHTKMVMTLVAVIVAVHWAGAAAQSDCTNVLISLSPCLNYITGNSSTPSQACCTQLASV 60
           M + KM   LV V+VA+  AGA AQS CT++LISLSPCLNYITGNSSTPSQ CCTQLA+V
Sbjct: 1   MANGKMATCLVLVLVAMLCAGATAQSSCTSILISLSPCLNYITGNSSTPSQQCCTQLANV 60

Query: 61  VRSQPQCLCQVLNGGGSSLGININQTQALALPRVCNVQTPSISSCNVAT--PTGSPAGAP 120
           VRS PQCLC+VLNGGGSSLGI INQTQALALP  CNVQTP ISSCN A+  P  SP G+P
Sbjct: 61  VRSSPQCLCEVLNGGGSSLGITINQTQALALPGSCNVQTPPISSCNAASPAPADSPVGSP 120

Query: 121 ESSNNVPSGPGSKTVPSTDND-SSDGTSNTLSKPLLFSILLASAYASAF 167
           ES + +P+G GSKTVPST  D SSDG++N LS  LL  +LLA++Y+S F
Sbjct: 121 ESGSIIPTGGGSKTVPSTQEDGSSDGSTNKLSLSLLIFLLLATSYSSIF 169

[Close]
BLAST of Carg23509 vs. TrEMBL
Match: tr|A0A2P5FWH3|A0A2P5FWH3_9ROSA (Lipid transfer protein/Par allergen OS=Trema orientalis OX=63057 GN=TorRG33x02_019160 PE=3 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.1e-49
Identity = 112/160 (70.00%), Postives = 126/160 (78.75%), Query Frame = 0 

Query: 8   MTLVAVIVAVHWAGAAA-QSDCTNVLISLSPCLNYITGNSSTPSQACCTQLASVVRSQPQ 67
           +TL  V+    WA AAA Q DCTNVL+ +SPCLNYITGNSSTPS  CC+QLASVVRS+PQ
Sbjct: 12  LTLAVVLTTSLWAMAAAQQQDCTNVLVGMSPCLNYITGNSSTPSSGCCSQLASVVRSEPQ 71

Query: 68  CLCQVLNGGGSSLGININQTQALALPRVCNVQTPSISSCNVATPTGSPAGAPESSNNVPS 127
           CLCQVLNGGGSSLGININQTQALALP  CNVQTP +S CN A+P  SPAG  +S N   S
Sbjct: 72  CLCQVLNGGGSSLGININQTQALALPGACNVQTPPLSRCNAASPAESPAGTSDSPNT--S 131

Query: 128 GPGSKTVPSTDNDSSDGTSNTLSKPLLFSILLASAYASAF 167
           G GSKTVP+TDN +SDG+S  +S PL F  LLA+AY SAF
Sbjct: 132 GSGSKTVPTTDNGTSDGSSTKMSIPLFFFALLAAAYTSAF 169

[Close]
BLAST of Carg23509 vs. TrEMBL
Match: tr|A0A2P5E3B8|A0A2P5E3B8_PARAD (Lipid transfer protein/Par allergen OS=Parasponia andersonii OX=3476 GN=PanWU01x14_004730 PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 4.1e-49
Identity = 111/160 (69.38%), Postives = 126/160 (78.75%), Query Frame = 0 

Query: 8   MTLVAVIVAVHWAGAAA-QSDCTNVLISLSPCLNYITGNSSTPSQACCTQLASVVRSQPQ 67
           +TL  V+    WA AAA Q DCTNVL+ +SPCLNYITGNSSTPS ACC+QLASVVRS+PQ
Sbjct: 11  LTLAVVLTTSLWAMAAAQQQDCTNVLVGMSPCLNYITGNSSTPSSACCSQLASVVRSEPQ 70

Query: 68  CLCQVLNGGGSSLGININQTQALALPRVCNVQTPSISSCNVATPTGSPAGAPESSNNVPS 127
           CLCQVLNGGGSSLGININQTQALALP  CNVQTP +S CN A+P  SPAG  +S    P+
Sbjct: 71  CLCQVLNGGGSSLGININQTQALALPGACNVQTPPLSRCNAASPAESPAGTSDS----PN 130

Query: 128 GPGSKTVPSTDNDSSDGTSNTLSKPLLFSILLASAYASAF 167
             GSKTVP+TDN +SDG+S  +S PL F  LLA+AY SAF
Sbjct: 131 TSGSKTVPTTDNGTSDGSSTMMSIPLFFFALLAAAYTSAF 166

[Close]
BLAST of Carg23509 vs. TrEMBL
Match: tr|A0A0L9TAM7|A0A0L9TAM7_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan442s003900 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 3.5e-48
Identity = 114/172 (66.28%), Postives = 133/172 (77.33%), Query Frame = 0 

Query: 1   MEHTKMVMTLVAVIVAVHWAGAAAQSDCTNVLISLSPCLNYITGNSSTPSQACCTQLASV 60
           M HT M   LV V++A+  AGAAAQ+ CTNV++SLSPCLNYITGNSSTPSQ CC+QL+SV
Sbjct: 1   MAHTTMDTGLVLVVIAMLCAGAAAQTSCTNVIVSLSPCLNYITGNSSTPSQGCCSQLSSV 60

Query: 61  VRSQPQCLCQVLNGGGSSLGININQTQALALPRVCNVQTPSISSCN---VATPTGSPAGA 120
           VRSQPQCLCQVL+GGGSSLGININQTQALALPR C VQTP  S CN    + PTG+ A  
Sbjct: 61  VRSQPQCLCQVLSGGGSSLGININQTQALALPRACQVQTPPTSQCNNGAASPPTGAVA-- 120

Query: 121 PESSNNVPSGPGSKTVPSTDNDSSDGTSNTLSKPLLFSILLASAYASAFKLY 170
            ES N+VPSG GSKT+P+TD+ SS G S  LS PL+  ++LA+ Y S F  Y
Sbjct: 121 -ESPNSVPSGGGSKTLPTTDDGSSAGNSIKLSIPLI--LILAATYVSTFTTY 167

The following BLAST results are available for this feature:
BLAST of Carg23509 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022979471.17.8e-8499.41non-specific lipid-transfer protein-like protein At2g13820 [Cucurbita maxima][more]
XP_022955415.13.1e-8095.86non-specific lipid-transfer protein-like protein At2g13820 [Cucurbita moschata][more]
XP_022934392.11.6e-6582.84non-specific lipid-transfer protein-like protein At2g13820 [Cucurbita moschata] ... [more]
XP_022138181.14.7e-6585.54non-specific lipid-transfer protein-like protein At2g13820 [Momordica charantia][more]
XP_022974389.16.2e-6582.25non-specific lipid-transfer protein-like protein At2g13820 [Cucurbita maxima] >X... [more]
BLAST of Carg23509 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G22600.11.3e-3265.71Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil... [more]
AT4G14815.11.3e-2954.29Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil... [more]
AT2G48130.13.7e-2744.12Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil... [more]
AT1G03103.15.1e-2149.04Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil... [more]
AT3G43720.16.7e-1335.54Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil... [more]
BLAST of Carg23509 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LZH5|LTPG2_ARATH1.2e-1135.54Non-specific lipid transfer protein GPI-anchored 2 OS=Arabidopsis thaliana OX=37... [more]
sp|Q9ZQI8|NLTL2_ARATH1.6e-1131.58Non-specific lipid-transfer protein-like protein At2g13820 OS=Arabidopsis thalia... [more]
sp|Q9ZVC7|XYP11_ARATH6.6e-1031.94Xylogen-like protein 11 OS=Arabidopsis thaliana OX=3702 GN=XYP11 PE=2 SV=2[more]
sp|Q8VYI9|NLTL5_ARATH1.4e-0729.61Non-specific lipid-transfer protein-like protein At5g64080 OS=Arabidopsis thalia... [more]
sp|Q43767|NLT41_HORVU2.9e-0532.71Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare OX=4513 GN=LTP4.1 PE=... [more]
BLAST of Carg23509 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2I4G909|A0A2I4G909_9ROSI1.8e-5268.67non-specific lipid-transfer protein-like protein At2g13820 OS=Juglans regia OX=5... [more]
tr|A0A061EM78|A0A061EM78_THECC1.3e-5069.23Non-specific lipid-transfer protein, putative isoform 1 OS=Theobroma cacao OX=36... [more]
tr|A0A2P5FWH3|A0A2P5FWH3_9ROSA1.1e-4970.00Lipid transfer protein/Par allergen OS=Trema orientalis OX=63057 GN=TorRG33x02_0... [more]
tr|A0A2P5E3B8|A0A2P5E3B8_PARAD4.1e-4969.38Lipid transfer protein/Par allergen OS=Parasponia andersonii OX=3476 GN=PanWU01x... [more]
tr|A0A0L9TAM7|A0A0L9TAM7_PHAAN3.5e-4866.28Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan442s003900 P... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006869lipid transport
Vocabulary: Molecular Function
TermDefinition
GO:0008289lipid binding
Vocabulary: INTERPRO
TermDefinition
IPR036312Bifun_inhib/LTP/seed_sf
IPR016140Bifunc_inhib/LTP/seed_store
IPR000528Plant_LTP
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006869 lipid transport
cellular_component GO:0005575 cellular_component
molecular_function GO:0008289 lipid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg23509-RACarg23509-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000528Plant lipid transfer protein/Par allergenPRINTSPR00382LIPIDTRNSFERcoord: 82..99
score: 31.45
coord: 27..43
score: 36.74
coord: 48..62
score: 26.87
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainSMARTSM00499aai_6coord: 28..105
e-value: 4.2E-10
score: 49.6
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainPFAMPF14368LTP_2coord: 12..105
e-value: 4.3E-17
score: 62.0
NoneNo IPR availableGENE3DG3DSA:1.10.110.10coord: 25..105
e-value: 2.4E-19
score: 70.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 108..144
NoneNo IPR availablePANTHERPTHR33044:SF76SUBFAMILY NOT NAMEDcoord: 5..164
NoneNo IPR availablePANTHERPTHR33044FAMILY NOT NAMEDcoord: 5..164
NoneNo IPR availableCDDcd00010AAI_LTSScoord: 35..97
e-value: 1.1134E-23
score: 88.6378
IPR036312Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamilySUPERFAMILYSSF47699Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumincoord: 27..107

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg23509Cla006045Watermelon (97103) v1carwmB0848
Carg23509Cla021611Watermelon (97103) v1carwmB0849
Carg23509Cla007515Watermelon (97103) v1carwmB0850
Carg23509Csa3G146490Cucumber (Chinese Long) v2carcuB0865
Carg23509MELO3C006519Melon (DHL92) v3.5.1carmeB0839
Carg23509ClCG07G000370Watermelon (Charleston Gray)carwcgB0823
Carg23509ClCG05G005060Watermelon (Charleston Gray)carwcgB0821
Carg23509ClCG06G006310Watermelon (Charleston Gray)carwcgB0822
Carg23509CSPI03G12980Wild cucumber (PI 183967)carcpiB0884
Carg23509Cucsa.254430Cucumber (Gy14) v1carcgyB0970
Carg23509CmaCh00G003590Cucurbita maxima (Rimu)carcmaB1173
Carg23509CmaCh14G017230Cucurbita maxima (Rimu)carcmaB1174
Carg23509CmaCh06G013970Cucurbita maxima (Rimu)carcmaB1177
Carg23509CmoCh06G014000Cucurbita moschata (Rifu)carcmoB1145
Carg23509CmoCh14G017620Cucurbita moschata (Rifu)carcmoB1142
Carg23509Lsi05G016180Bottle gourd (USVL1VR-Ls)carlsiB772
Carg23509Lsi09G013090Bottle gourd (USVL1VR-Ls)carlsiB770
Carg23509Cp4.1LG03g10640Cucurbita pepo (Zucchini)carcpeB1183
Carg23509Cp4.1LG08g04100Cucurbita pepo (Zucchini)carcpeB1184
Carg23509CsGy3G013130Cucumber (Gy14) v2carcgybB0838
Carg23509MELO3C006519.2Melon (DHL92) v3.6.1carmedB0850
Carg23509CsaV3_3G013120Cucumber (Chinese Long) v3carcucB0889
Carg23509Cla97C06G115830Watermelon (97103) v2carwmbB0884
Carg23509Cla97C07G128640Watermelon (97103) v2carwmbB0885
Carg23509Bhi01G000571Wax gourdcarwgoB0988
Carg23509Bhi05G000230Wax gourdcarwgoB0989
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg23509Carg06153Silver-seed gourdcarcarB630
The following block(s) are covering this gene:
GeneOrganismBlock
Carg23509Silver-seed gourdcarcarB134
Carg23509Silver-seed gourdcarcarB265
Carg23509Silver-seed gourdcarcarB348
Carg23509Cucurbita maxima (Rimu)carcmaB1175
Carg23509Cucurbita maxima (Rimu)carcmaB1176
Carg23509Cucurbita moschata (Rifu)carcmoB1143
Carg23509Cucurbita moschata (Rifu)carcmoB1144
Carg23509Cucurbita moschata (Rifu)carcmoB1146
Carg23509Cucurbita pepo (Zucchini)carcpeB1182
Carg23509Bottle gourd (USVL1VR-Ls)carlsiB771
Carg23509Watermelon (Charleston Gray)carwcgB0820
Carg23509Watermelon (97103) v1carwmB0847
Carg23509Watermelon (97103) v2carwmbB0883
Carg23509Watermelon (97103) v2carwmbB0886
Carg23509Wax gourdcarwgoB0987
Carg23509Wax gourdcarwgoB0990