Carg23252 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23252
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transmembrane protein
Location	Cucurbita_argyrosperma_scaffold_102 : 487033 .. 487347 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAGATCGTCGAGCGCCTGCATTGTCTCGGATAAGAGATCACTAGCTTCATCATCGTCGTCGTCGCAATCCGCTATCTTCAGATCTTCCAGTGTGAGTTCCGGCTTGGAATCAGATGTTTTCCTGCCGACGTTCAATCCGTTCTCTCACGCGGCTGCGAAAAAACGTCGCCATCTTAAGCTCGCTAGGATTTTCGTCCATTTCATCCCTTTCGTCGTTATCTTCTGTGCTGTCGTTCTATGGTTCTTCTCCGATCCAGGTACTGAAATTACTCGAGTGAAAGATGCCCATAGATCGAGATCGACTATTTGA

mRNA sequence

ATGAGGAGATCGTCGAGCGCCTGCATTGTCTCGGATAAGAGATCACTAGCTTCATCATCGTCGTCGTCGCAATCCGCTATCTTCAGATCTTCCAGTGTGAGTTCCGGCTTGGAATCAGATGTTTTCCTGCCGACGTTCAATCCGTTCTCTCACGCGGCTGCGAAAAAACGTCGCCATCTTAAGCTCGCTAGGATTTTCGTCCATTTCATCCCTTTCGTCGTTATCTTCTGTGCTGTCGTTCTATGGTTCTTCTCCGATCCAGGTACTGAAATTACTCGAGTGAAAGATGCCCATAGATCGAGATCGACTATTTGA

Coding sequence (CDS)

ATGAGGAGATCGTCGAGCGCCTGCATTGTCTCGGATAAGAGATCACTAGCTTCATCATCGTCGTCGTCGCAATCCGCTATCTTCAGATCTTCCAGTGTGAGTTCCGGCTTGGAATCAGATGTTTTCCTGCCGACGTTCAATCCGTTCTCTCACGCGGCTGCGAAAAAACGTCGCCATCTTAAGCTCGCTAGGATTTTCGTCCATTTCATCCCTTTCGTCGTTATCTTCTGTGCTGTCGTTCTATGGTTCTTCTCCGATCCAGGTACTGAAATTACTCGAGTGAAAGATGCCCATAGATCGAGATCGACTATTTGA

Protein sequence

MRRSSSACIVSDKRSLASSSSSSQSAIFRSSSVSSGLESDVFLPTFNPFSHAAAKKRRHLKLARIFVHFIPFVVIFCAVVLWFFSDPGTEITRVKDAHRSRSTI

Homology

[Close]

BLAST of Carg23252 vs. NCBI nr
Match: KGN55830.1 (hypothetical protein Csa_3G017240 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 3.8e-33
Identity = 75/104 (72.12%), Postives = 84/104 (80.77%), Query Frame = 0


Query: 1   MRRSSSACIVSDXXXXXXXXXXXXXXIFRSSSVSSGLESDVFLPTFNPFSHAAAKKRRHL 60
           M+RSSSA IVSD              IFRSSSVSSGLES+ +LPTF+PFSHAA KKRRHL
Sbjct: 1   MKRSSSASIVSDNRFVCSSSSLSLSSIFRSSSVSSGLESEPYLPTFSPFSHAAEKKRRHL 60

Query: 61  KLARIFVHFIPFVVIFCAVVLWFFSDPGTEITRVKDAHRSRSTI 105
           KLA+IF+H IPFV++FCA+VLW FSDPGTEITRVKDA RSRSTI
Sbjct: 61  KLAKIFIHSIPFVILFCAIVLWLFSDPGTEITRVKDARRSRSTI 104

[Close]

BLAST of Carg23252 vs. NCBI nr
Match: XP_022923373.1 (uncharacterized protein LOC111431091 [Cucurbita moschata])

HSP 1 Score: 146.7 bits (369), Expect = 4.3e-32
Identity = 88/91 (96.70%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MRRSSSACIVSDXXXXXXXXXXXXXXIFRSSSVSSGLESDVFLPTFNPFSHAAAKKRRHL 60
          MRRSSSACIVSDXXXXXXXXXXXXXXIFRSSSVSSGLESDVFLPTFNPFSHAAAKKRRHL
Sbjct: 1  MRRSSSACIVSDXXXXXXXXXXXXXXIFRSSSVSSGLESDVFLPTFNPFSHAAAKKRRHL 60

Query: 61 KLARIFVHFIPFVVIFCAVVLWFFSDPGTEI 92
          KLARIFVHFIPFVVIFCAVVLWFFSDPG+++
Sbjct: 61 KLARIFVHFIPFVVIFCAVVLWFFSDPGSQL 91

[Close]

BLAST of Carg23252 vs. NCBI nr
Match: XP_023552035.1 (uncharacterized protein LOC111809829 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 144.1 bits (362), Expect = 2.8e-31
Identity = 86/91 (94.51%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1  MRRSSSACIVSDXXXXXXXXXXXXXXIFRSSSVSSGLESDVFLPTFNPFSHAAAKKRRHL 60
          MRRSSSACIVSD XXXXXXXXXXXXXIFRSSSVSSGLESDVFLPTFNPFS+AAAKKRRHL
Sbjct: 1  MRRSSSACIVSDKXXXXXXXXXXXXXIFRSSSVSSGLESDVFLPTFNPFSNAAAKKRRHL 60

Query: 61 KLARIFVHFIPFVVIFCAVVLWFFSDPGTEI 92
          KLARIFVHFIPFVVIFCAVVLWFFSDPG+++
Sbjct: 61 KLARIFVHFIPFVVIFCAVVLWFFSDPGSQL 91

[Close]

BLAST of Carg23252 vs. NCBI nr
Match: XP_011650378.1 (PREDICTED: uncharacterized protein LOC101212731 [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 8.6e-25
Identity = 60/88 (68.18%), Postives = 69/88 (78.41%), Query Frame = 0


Query: 1  MRRSSSACIVSDXXXXXXXXXXXXXXIFRSSSVSSGLESDVFLPTFNPFSHAAAKKRRHL 60
          M+RSSSA IVSD              IFRSSSVSSGLES+ +LPTF+PFSHAA KKRRHL
Sbjct: 1  MKRSSSASIVSDNRFVCSSSSLSLSSIFRSSSVSSGLESEPYLPTFSPFSHAAEKKRRHL 60

Query: 61 KLARIFVHFIPFVVIFCAVVLWFFSDPG 89
          KLA+IF+H IPFV++FCA+VLW FSDPG
Sbjct: 61 KLAKIFIHSIPFVILFCAIVLWLFSDPG 88

[Close]

BLAST of Carg23252 vs. NCBI nr
Match: XP_008448788.1 (PREDICTED: uncharacterized protein LOC103490852 [Cucumis melo])

HSP 1 Score: 114.8 bits (286), Expect = 1.8e-22
Identity = 58/90 (64.44%), Postives = 68/90 (75.56%), Query Frame = 0


Query: 1  MRRSSSACIVSD--XXXXXXXXXXXXXXIFRSSSVSSGLESDVFLPTFNPFSHAAAKKRR 60
          M+RSSSA IVSD                IFRSSSVS GLES+ +LPTF+PFSHAA KKRR
Sbjct: 1  MKRSSSASIVSDKRFVYSSSSSSLSQSAIFRSSSVSFGLESEPYLPTFSPFSHAAEKKRR 60

Query: 61 HLKLARIFVHFIPFVVIFCAVVLWFFSDPG 89
          HLKLA+IF+H IPF+++FCA+VLW FSDPG
Sbjct: 61 HLKLAKIFIHSIPFIILFCAIVLWLFSDPG 90

[Close]

BLAST of Carg23252 vs. TAIR10
Match: AT2G35658.2 (unknown protein)

HSP 1 Score: 62.0 bits (149), Expect = 2.5e-10
Identity = 43/96 (44.79%), Postives = 56/96 (58.33%), Query Frame = 0


Query: 1  MRRSSSACIVSDXXXXXXXXXXXXXXIFRSSSVSSGLESDVFLPTFNPFSHAAAKKRRHL 60
          MRRS+SA IVSD      XXXXXXXX           +S + LP ++P SH   K +   
Sbjct: 1  MRRSASASIVSD--QLSAXXXXXXXXXXXXXXXXXXXDSHLLLPRYDPNSHPGKKNKSRF 60

Query: 61 KLARIFVHFIPFVVIFCAVVLWFFSDPGTEITRVKD 97
          + A   +HFIP V+I CAV+LW FS+PG +I  + D
Sbjct: 61 RSAENAIHFIPIVLILCAVILWMFSNPGNQIQFLGD 94

[Close]

BLAST of Carg23252 vs. TAIR10
Match: AT5G07490.1 (unknown protein)

HSP 1 Score: 46.2 bits (108), Expect = 1.4e-05
Identity = 24/57 (42.11%), Postives = 34/57 (59.65%), Query Frame = 0


Query: 36 GLESDVFLPTFNPFSHAAAKKRR-HLKLARIFVHFIPFVVIFCAVVLWFFSDPGTEI 92
          GL+ D   P ++P      KK +   K A   VH IPFV++ CA+VLWFFS+P  ++
Sbjct: 27 GLDEDEPAP-YDPTGQEMTKKEKSRTKFAENAVHIIPFVLLACALVLWFFSNPDVDV 82

[Close]

BLAST of Carg23252 vs. TAIR10
Match: AT5G61630.1 (unknown protein)

HSP 1 Score: 44.7 bits (104), Expect = 4.1e-05
Identity = 20/50 (40.00%), Postives = 31/50 (62.00%), Query Frame = 0


Query: 43 LPTF-NPFSHAAAKKRRHLKLARIFVHFIPFVVIFCAVVLWFFSDPGTEI 92
          LP++ NP      K++   K A   +H IPFV++ CA+VLW FS+P  ++
Sbjct: 36 LPSYNNPPEEMVKKEKSRAKFAENAIHIIPFVLLACALVLWLFSNPDVDV 85

[Close]

BLAST of Carg23252 vs. TrEMBL
Match: tr|A0A0A0L1G0|A0A0A0L1G0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017240 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.5e-33
Identity = 75/104 (72.12%), Postives = 84/104 (80.77%), Query Frame = 0


Query: 1   MRRSSSACIVSDXXXXXXXXXXXXXXIFRSSSVSSGLESDVFLPTFNPFSHAAAKKRRHL 60
           M+RSSSA IVSD              IFRSSSVSSGLES+ +LPTF+PFSHAA KKRRHL
Sbjct: 1   MKRSSSASIVSDNRFVCSSSSLSLSSIFRSSSVSSGLESEPYLPTFSPFSHAAEKKRRHL 60

Query: 61  KLARIFVHFIPFVVIFCAVVLWFFSDPGTEITRVKDAHRSRSTI 105
           KLA+IF+H IPFV++FCA+VLW FSDPGTEITRVKDA RSRSTI
Sbjct: 61  KLAKIFIHSIPFVILFCAIVLWLFSDPGTEITRVKDARRSRSTI 104

[Close]

BLAST of Carg23252 vs. TrEMBL
Match: tr|A0A1S3BKI8|A0A1S3BKI8_CUCME (uncharacterized protein LOC103490852 OS=Cucumis melo OX=3656 GN=LOC103490852 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.2e-22
Identity = 58/90 (64.44%), Postives = 68/90 (75.56%), Query Frame = 0


Query: 1  MRRSSSACIVSD--XXXXXXXXXXXXXXIFRSSSVSSGLESDVFLPTFNPFSHAAAKKRR 60
          M+RSSSA IVSD                IFRSSSVS GLES+ +LPTF+PFSHAA KKRR
Sbjct: 1  MKRSSSASIVSDKRFVYSSSSSSLSQSAIFRSSSVSFGLESEPYLPTFSPFSHAAEKKRR 60

Query: 61 HLKLARIFVHFIPFVVIFCAVVLWFFSDPG 89
          HLKLA+IF+H IPF+++FCA+VLW FSDPG
Sbjct: 61 HLKLAKIFIHSIPFIILFCAIVLWLFSDPG 90

[Close]

BLAST of Carg23252 vs. TrEMBL
Match: tr|A0A1U8AAT1|A0A1U8AAT1_NELNU (uncharacterized protein LOC104598687 OS=Nelumbo nucifera OX=4432 GN=LOC104598687 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.3e-08
Identity = 35/101 (34.65%), Postives = 56/101 (55.45%), Query Frame = 0


Query: 1   MRRSSSACIVSDXXXXXXXXXXXXXXIFRSSSVSSGLESDVFLPTFNPFSHAAAKKRRHL 60
           M RS+SA  VSD                ++ +V +  +    +PT+NP S AA K+++ +
Sbjct: 1   MHRSASATRVSDEFFIQHSSPPSSSKASQTHNVKTAFDDINEIPTYNPLSDAAKKEKQRI 60

Query: 61  KLARIFVHFIPFVVIFCAVVLWFFSDPGTEITRVKDAHRSR 102
           K A   VH IPFV++ CA++LWFFS+P  ++    ++  SR
Sbjct: 61  KFAENAVHVIPFVLLLCALILWFFSNPEVDMVHKDNSILSR 101

[Close]

BLAST of Carg23252 vs. TrEMBL
Match: tr|A0A1R3IRU1|A0A1R3IRU1_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_21678 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.8e-07
Identity = 39/94 (41.49%), Postives = 48/94 (51.06%), Query Frame = 0


Query: 1  MRRSSSACIVSDXXXXXXXXXXXXXXIFRSSSVSSGLESD------VFLPTFNPFSHAAA 60
          M RSSS   VSD              I  S S S  L+          LPT+NP SHAA 
Sbjct: 1  MHRSSSGSRVSD-----------EFFINSSPSQSQSLKQQSSETVPQHLPTYNPLSHAAK 60

Query: 61 KKRRHLKLARIFVHFIPFVVIFCAVVLWFFSDPG 89
          K+R  L+ A   +H IP V++ CA++LWFFS PG
Sbjct: 61 KERSRLRSAENAIHIIPLVLVLCAIILWFFSSPG 83

[Close]

BLAST of Carg23252 vs. TrEMBL
Match: tr|A0A2R6PMK3|A0A2R6PMK3_ACTCH (Transmembrane protease OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc28084 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.0e-07
Identity = 41/101 (40.59%), Postives = 54/101 (53.47%), Query Frame = 0


Query: 1  MRRSSSACIVSDXXXXXXXXXXXXXXIFRSSSVSSGL--ESDV--FLPTFNPFSHAAAKK 60
          M RSSSA  VS+                ++SS S  L  ESD    LPT +P SH A K 
Sbjct: 1  MHRSSSATRVSEPHFN------------QASSPSRSLRPESDAGDQLPTCDPQSHVAKKA 60

Query: 61 RRHLKLARIFVHFIPFVVIFCAVVLWFFSDPGTEITRVKDA 98
          R  L+ A   VHFIP +++ CA+VLWFFS+P  ++    D+
Sbjct: 61 RTRLRSAETAVHFIPLLLVLCAIVLWFFSNPAVDLGNKGDS 89

The following BLAST results are available for this feature:

BLAST of Carg23252 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55830.1	3.8e-33	72.12	hypothetical protein Csa_3G017240 [Cucumis sativus]	[more]
XP_022923373.1	4.3e-32	96.70	uncharacterized protein LOC111431091 [Cucurbita moschata]	[more]
XP_023552035.1	2.8e-31	94.51	uncharacterized protein LOC111809829 [Cucurbita pepo subsp. pepo]	[more]
XP_011650378.1	8.6e-25	68.18	PREDICTED: uncharacterized protein LOC101212731 [Cucumis sativus]	[more]
XP_008448788.1	1.8e-22	64.44	PREDICTED: uncharacterized protein LOC103490852 [Cucumis melo]	[more]

BLAST of Carg23252 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G35658.2	2.5e-10	44.79	unknown protein	[more]
AT5G07490.1	1.4e-05	42.11	unknown protein	[more]
AT5G61630.1	4.1e-05	40.00	unknown protein	[more]

BLAST of Carg23252 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg23252 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L1G0\|A0A0A0L1G0_CUCSA	2.5e-33	72.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017240 PE=4 SV=1	[more]
tr\|A0A1S3BKI8\|A0A1S3BKI8_CUCME	1.2e-22	64.44	uncharacterized protein LOC103490852 OS=Cucumis melo OX=3656 GN=LOC103490852 PE=...	[more]
tr\|A0A1U8AAT1\|A0A1U8AAT1_NELNU	1.3e-08	34.65	uncharacterized protein LOC104598687 OS=Nelumbo nucifera OX=4432 GN=LOC104598687...	[more]
tr\|A0A1R3IRU1\|A0A1R3IRU1_9ROSI	1.8e-07	41.49	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_21678 PE=4 SV=1	[more]
tr\|A0A2R6PMK3\|A0A2R6PMK3_ACTCH	7.0e-07	40.59	Transmembrane protease OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23252-RA	Carg23252-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34189:SF2	SUBFAMILY NOT NAMED	coord: 1..101
None	No IPR available	PANTHER	PTHR34189	FAMILY NOT NAMED	coord: 1..101

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23252	Csa3G017240	Cucumber (Chinese Long) v2	carcuB0727
Carg23252	MELO3C013908	Melon (DHL92) v3.5.1	carmeB0704
Carg23252	CSPI03G02350	Wild cucumber (PI 183967)	carcpiB0742
Carg23252	Cucsa.321240	Cucumber (Gy14) v1	carcgyB0792
Carg23252	CmaCh16G011110	Cucurbita maxima (Rimu)	carcmaB0989
Carg23252	CmaCh06G008080	Cucurbita maxima (Rimu)	carcmaB0991
Carg23252	CmoCh06G008310	Cucurbita moschata (Rifu)	carcmoB0963
Carg23252	CmoCh16G011620	Cucurbita moschata (Rifu)	carcmoB0961
Carg23252	Lsi07G012630	Bottle gourd (USVL1VR-Ls)	carlsiB644
Carg23252	Cp4.1LG08g07230	Cucurbita pepo (Zucchini)	carcpeB0991
Carg23252	Cp4.1LG14g09310	Cucurbita pepo (Zucchini)	carcpeB0989
Carg23252	CsGy3G002250	Cucumber (Gy14) v2	carcgybB0704
Carg23252	MELO3C013908.2	Melon (DHL92) v3.6.1	carmedB0716
Carg23252	CsaV3_3G002380	Cucumber (Chinese Long) v3	carcucB0745
Carg23252	Bhi11G000054	Wax gourd	carwgoB0829

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23252	Silver-seed gourd	carcarB520
Carg23252	Silver-seed gourd	carcarB582
Carg23252	Cucumber (Gy14) v2	carcgybB0705
Carg23252	Cucumber (Gy14) v1	carcgyB0790
Carg23252	Cucurbita maxima (Rimu)	carcmaB0990
Carg23252	Cucurbita moschata (Rifu)	carcmoB0962
Carg23252	Cucurbita pepo (Zucchini)	carcpeB0990
Carg23252	Wild cucumber (PI 183967)	carcpiB0743
Carg23252	Cucumber (Chinese Long) v2	carcuB0728
Carg23252	Cucumber (Chinese Long) v3	carcucB0746
Carg23252	Bottle gourd (USVL1VR-Ls)	carlsiB643
Carg23252	Melon (DHL92) v3.5.1	carmeB0702
Carg23252	Melon (DHL92) v3.6.1	carmedB0715
Carg23252	Watermelon (Charleston Gray)	carwcgB0682
Carg23252	Watermelon (Charleston Gray)	carwcgB0683
Carg23252	Watermelon (97103) v2	carwmbB0736
Carg23252	Watermelon (97103) v2	carwmbB0738