Carg22989 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22989
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	PRA1 family protein
Location	Cucurbita_argyrosperma_scaffold_127 : 35243 .. 35875 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACCGGTTAAATTCTCCGCCGGCTACGGCACCGTCCCCTCTCCGGCCGCCTCCACCTCCGCCGGAGTTCCACCATCTTTCCCTTCCAGTTCCTCCTTCCTCGAACGTGCTAAATCCACCACGCAATCCCTAATCGCCACACGGCGGCCATGGCGAGAGCTCTTCGATTTCTCCGCCTTTTCTCTCCCTTTCAGCTATGACGACGCCATGGCCAGAATCCGCCAGAACGTCGACTACTTTCGTGTTAATTACGCCTTGGTGATGCTCATAATCGTTTTCCTCAGCCTGTTCTGGCACCCGATTTCGATCATCGTCTTTCTCCTCATCTTCGTTGGTTGGTTGTTCTGCTACTTCCTTCGTGACCAGCCCCTCGTTCTCTTCAACCAAACATTCGATGATAAAATTGTTTTGGGGGTTTTGAGCATTGTTACCATCATTGCTCTTGTTTCTACTGATGTCGGATCGAATGTTTTGGGAGCCCTAATTACAGGTGTCGCTGTGGTCGGACTTCACGCGGCGTTTCGGATTACAGCGGATCATTTCCTCGACGAGGAGACCGCCGCAGAAGGGGGATTGCTGTCGGTTGTGGGAAATCAGCAACAACAACAACGAGGTTACACTCGGATTTGA

mRNA sequence

ATGTCACCGGTTAAATTCTCCGCCGGCTACGGCACCGTCCCCTCTCCGGCCGCCTCCACCTCCGCCGGAGTTCCACCATCTTTCCCTTCCAGTTCCTCCTTCCTCGAACGTGCTAAATCCACCACGCAATCCCTAATCGCCACACGGCGGCCATGGCGAGAGCTCTTCGATTTCTCCGCCTTTTCTCTCCCTTTCAGCTATGACGACGCCATGGCCAGAATCCGCCAGAACGTCGACTACTTTCGTGTTAATTACGCCTTGGTGATGCTCATAATCGTTTTCCTCAGCCTGTTCTGGCACCCGATTTCGATCATCGTCTTTCTCCTCATCTTCGTTGGTTGGTTGTTCTGCTACTTCCTTCGTGACCAGCCCCTCGTTCTCTTCAACCAAACATTCGATGATAAAATTGTTTTGGGGGTTTTGAGCATTGTTACCATCATTGCTCTTGTTTCTACTGATGTCGGATCGAATGTTTTGGGAGCCCTAATTACAGGTGTCGCTGTGGTCGGACTTCACGCGGCGTTTCGGATTACAGCGGATCATTTCCTCGACGAGGAGACCGCCGCAGAAGGGGGATTGCTGTCGGTTGTGGGAAATCAGCAACAACAACAACGAGGTTACACTCGGATTTGA

Coding sequence (CDS)

ATGTCACCGGTTAAATTCTCCGCCGGCTACGGCACCGTCCCCTCTCCGGCCGCCTCCACCTCCGCCGGAGTTCCACCATCTTTCCCTTCCAGTTCCTCCTTCCTCGAACGTGCTAAATCCACCACGCAATCCCTAATCGCCACACGGCGGCCATGGCGAGAGCTCTTCGATTTCTCCGCCTTTTCTCTCCCTTTCAGCTATGACGACGCCATGGCCAGAATCCGCCAGAACGTCGACTACTTTCGTGTTAATTACGCCTTGGTGATGCTCATAATCGTTTTCCTCAGCCTGTTCTGGCACCCGATTTCGATCATCGTCTTTCTCCTCATCTTCGTTGGTTGGTTGTTCTGCTACTTCCTTCGTGACCAGCCCCTCGTTCTCTTCAACCAAACATTCGATGATAAAATTGTTTTGGGGGTTTTGAGCATTGTTACCATCATTGCTCTTGTTTCTACTGATGTCGGATCGAATGTTTTGGGAGCCCTAATTACAGGTGTCGCTGTGGTCGGACTTCACGCGGCGTTTCGGATTACAGCGGATCATTTCCTCGACGAGGAGACCGCCGCAGAAGGGGGATTGCTGTCGGTTGTGGGAAATCAGCAACAACAACAACGAGGTTACACTCGGATTTGA

Protein sequence

MSPVKFSAGYGTVPSPAASTSAGVPPSFPSSSSFLERAKSTTQSLIATRRPWRELFDFSAFSLPFSYDDAMARIRQNVDYFRVNYALVMLIIVFLSLFWHPISIIVFLLIFVGWLFCYFLRDQPLVLFNQTFDDKIVLGVLSIVTIIALVSTDVGSNVLGALITGVAVVGLHAAFRITADHFLDEETAAEGGLLSVVGNQQQQQRGYTRI

Homology

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BLAST of Carg22989 vs. NCBI nr
Match: XP_022946131.1 (PRA1 family protein E [Cucurbita moschata])

HSP 1 Score: 392.5 bits (1007), Expect = 9.0e-106
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0


Query: 1   MSPVKFSAGYGTVPSPAASTSAGVPPSFPSSSSFLERAKSTTQSLIATRRPWRELFDFSA 60
           MSPVKFSAGYGTVPSPAASTSAGVPPSFPSSSSFLERAKSTTQSLIATRRPWRELFDFSA
Sbjct: 1   MSPVKFSAGYGTVPSPAASTSAGVPPSFPSSSSFLERAKSTTQSLIATRRPWRELFDFSA 60

Query: 61  FSLPFSYDDAMARIRQNVDYFRVNYALVMLIIVFLSLFWHPISIIVFLLIFVGWLFCYFL 120
           FSLPFSYDDAMARIRQNVDYFRVNYALVMLIIVFLSLFWHPISIIVFLLIFVGWLFCYFL
Sbjct: 61  FSLPFSYDDAMARIRQNVDYFRVNYALVMLIIVFLSLFWHPISIIVFLLIFVGWLFCYFL 120

Query: 121 RDQPLVLFNQTFDDKIVLGVLSIVTIIALVSTDVGSNVLGALITGVAVVGLHAAFRITAD 180
           RDQPLVLFNQTFDDKIVLGVLSIVTIIALVSTDVGSNVLGALITGVAVVGLHAAFRITAD
Sbjct: 121 RDQPLVLFNQTFDDKIVLGVLSIVTIIALVSTDVGSNVLGALITGVAVVGLHAAFRITAD 180

Query: 181 HFLDEETAAEGGLLSVVGNQQQQQRGYTRI 211
           HFLDEETAAEGGLLSVVGNQQQQQRGYTRI
Sbjct: 181 HFLDEETAAEGGLLSVVGNQQQQQRGYTRI 210

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BLAST of Carg22989 vs. NCBI nr
Match: XP_023521163.1 (PRA1 family protein E-like, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 378.6 bits (971), Expect = 1.3e-101
Identity = 203/204 (99.51%), Postives = 203/204 (99.51%), Query Frame = 0


Query: 1   MSPVKFSAGYGTVPSPAASTSAGVPPSFPSSSSFLERAKSTTQSLIATRRPWRELFDFSA 60
           MSPVKFSAGYGTVPSPAASTSAGVPPSFPSSSSFLERAKSTTQSLIATRRPWRELFDFSA
Sbjct: 1   MSPVKFSAGYGTVPSPAASTSAGVPPSFPSSSSFLERAKSTTQSLIATRRPWRELFDFSA 60

Query: 61  FSLPFSYDDAMARIRQNVDYFRVNYALVMLIIVFLSLFWHPISIIVFLLIFVGWLFCYFL 120
           FSLPFSYDDAMARIRQNVDYFRVNYALVMLIIVF SLFWHPISIIVFLLIFVGWLFCYFL
Sbjct: 61  FSLPFSYDDAMARIRQNVDYFRVNYALVMLIIVFFSLFWHPISIIVFLLIFVGWLFCYFL 120

Query: 121 RDQPLVLFNQTFDDKIVLGVLSIVTIIALVSTDVGSNVLGALITGVAVVGLHAAFRITAD 180
           RDQPLVLFNQTFDDKIVLGVLSIVTIIALVSTDVGSNVLGALITGVAVVGLHAAFRITAD
Sbjct: 121 RDQPLVLFNQTFDDKIVLGVLSIVTIIALVSTDVGSNVLGALITGVAVVGLHAAFRITAD 180

Query: 181 HFLDEETAAEGGLLSVVGNQQQQQ 205
           HFLDEETAAEGGLLSVVGNQQQQQ
Sbjct: 181 HFLDEETAAEGGLLSVVGNQQQQQ 204

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BLAST of Carg22989 vs. NCBI nr
Match: XP_004139244.1 (PREDICTED: PRA1 family protein E-like [Cucumis sativus] >KGN60794.1 hypothetical protein Csa_2G010300 [Cucumis sativus])

HSP 1 Score: 349.7 bits (896), Expect = 6.7e-93
Identity = 192/214 (89.72%), Postives = 200/214 (93.46%), Query Frame = 0


Query: 1   MSPVKFSAGYGTVPSPAA----STSAGVPPSFPSSSSFLERAKSTTQSLIATRRPWRELF 60
           MS VKFS+GYG VPS AA    +TS+G PPSFPSSSSFLERAK+TTQSLIAT+RPWRELF
Sbjct: 1   MSSVKFSSGYGAVPSQAAATIPTTSSGAPPSFPSSSSFLERAKTTTQSLIATQRPWRELF 60

Query: 61  DFSAFSLPFSYDDAMARIRQNVDYFRVNYALVMLIIVFLSLFWHPISIIVFLLIFVGWLF 120
           DFSAFSLPFSYDDAMARIRQNV+YFRVNYALVMLIIVFLSLFWHPISIIVFLLIFV WLF
Sbjct: 61  DFSAFSLPFSYDDAMARIRQNVNYFRVNYALVMLIIVFLSLFWHPISIIVFLLIFVAWLF 120

Query: 121 CYFLRDQPLVLFNQTFDDKIVLGVLSIVTIIALVSTDVGSNVLGALITGVAVVGLHAAFR 180
            YF RDQPLVLFNQTFDDK+VLGVLSI TIIALVSTDVGSNVLGALITGV VVGLH+AFR
Sbjct: 121 FYFFRDQPLVLFNQTFDDKVVLGVLSIFTIIALVSTDVGSNVLGALITGVTVVGLHSAFR 180

Query: 181 ITADHFLDEETAAEGGLLSVVGNQQQQQRGYTRI 211
           ITADHFLDEETAAEGGLLSVVGN QQQQRGYTRI
Sbjct: 181 ITADHFLDEETAAEGGLLSVVGN-QQQQRGYTRI 213

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BLAST of Carg22989 vs. NCBI nr
Match: XP_022999099.1 (PRA1 family protein E-like [Cucurbita maxima])

HSP 1 Score: 342.4 bits (877), Expect = 1.1e-90
Identity = 184/185 (99.46%), Postives = 184/185 (99.46%), Query Frame = 0


Query: 1   MSPVKFSAGYGTVPSPAASTSAGVPPSFPSSSSFLERAKSTTQSLIATRRPWRELFDFSA 60
           MSPVKFSAGYGTVPSPAASTSAGV PSFPSSSSFLERAKSTTQSLIATRRPWRELFDFSA
Sbjct: 1   MSPVKFSAGYGTVPSPAASTSAGVTPSFPSSSSFLERAKSTTQSLIATRRPWRELFDFSA 60

Query: 61  FSLPFSYDDAMARIRQNVDYFRVNYALVMLIIVFLSLFWHPISIIVFLLIFVGWLFCYFL 120
           FSLPFSYDDAMARIRQNVDYFRVNYALVMLIIVFLSLFWHPISIIVFLLIFVGWLFCYFL
Sbjct: 61  FSLPFSYDDAMARIRQNVDYFRVNYALVMLIIVFLSLFWHPISIIVFLLIFVGWLFCYFL 120

Query: 121 RDQPLVLFNQTFDDKIVLGVLSIVTIIALVSTDVGSNVLGALITGVAVVGLHAAFRITAD 180
           RDQPLVLFNQTFDDKIVLGVLSIVTIIALVSTDVGSNVLGALITGVAVVGLHAAFRITAD
Sbjct: 121 RDQPLVLFNQTFDDKIVLGVLSIVTIIALVSTDVGSNVLGALITGVAVVGLHAAFRITAD 180

Query: 181 HFLDE 186
           HFLDE
Sbjct: 181 HFLDE 185

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BLAST of Carg22989 vs. NCBI nr
Match: XP_008456115.1 (PREDICTED: PRA1 family protein E [Cucumis melo] >XP_008456124.1 PREDICTED: PRA1 family protein E [Cucumis melo])

HSP 1 Score: 327.0 bits (837), Expect = 4.6e-86
Identity = 184/214 (85.98%), Postives = 189/214 (88.32%), Query Frame = 0


Query: 1   MSPVKFSAGYGTVPSPAAST----SAGVPPSFPSSSSFLERAKSTTQSLIATRRPWRELF 60
           MS VKFS+GYG VPSPAA+T                 FLERAK+TTQSLIAT RPWRELF
Sbjct: 1   MSSVKFSSGYGAVPSPAAATIPTXXXXXXXXXXXXXXFLERAKTTTQSLIATLRPWRELF 60

Query: 61  DFSAFSLPFSYDDAMARIRQNVDYFRVNYALVMLIIVFLSLFWHPISIIVFLLIFVGWLF 120
           DFSAFSLPFSYDDAMARIRQNV+YFRVNYALVMLIIVFLSLFWHPISIIVFLLIFV WLF
Sbjct: 61  DFSAFSLPFSYDDAMARIRQNVNYFRVNYALVMLIIVFLSLFWHPISIIVFLLIFVAWLF 120

Query: 121 CYFLRDQPLVLFNQTFDDKIVLGVLSIVTIIALVSTDVGSNVLGALITGVAVVGLHAAFR 180
            YF RDQPLVLFNQTFDDK+VLGVLSI TIIALVSTDVGSNVLGALITGVAVVGLHAAFR
Sbjct: 121 FYFFRDQPLVLFNQTFDDKVVLGVLSIFTIIALVSTDVGSNVLGALITGVAVVGLHAAFR 180

Query: 181 ITADHFLDEETAAEGGLLSVVGNQQQQQRGYTRI 211
           ITADHFLDEETAAEGGLLSVVGN QQQQRGYTRI
Sbjct: 181 ITADHFLDEETAAEGGLLSVVGN-QQQQRGYTRI 213

[Close]

BLAST of Carg22989 vs. TAIR10
Match: AT1G08770.1 (prenylated RAB acceptor 1.E)

HSP 1 Score: 176.0 bits (445), Expect = 2.4e-44
Identity = 97/176 (55.11%), Postives = 126/176 (71.59%), Query Frame = 0


Query: 37  RAKSTTQSLIATRRPWRELFDFSAFSLPFSYDDAMARIRQNVDYFRVNYALVMLIIVFLS 96
           RAK TTQS+I T RPWRE+ D SA SLP  YD+AMA ++ N+ YFR NYAL +L IVFL 
Sbjct: 35  RAKQTTQSMITTLRPWREILDLSALSLPRGYDEAMAHLKHNISYFRGNYALAVLAIVFLG 94

Query: 97  LFWHPISIIVFLLIFVGWLFCYFLRD--QPLVLFNQTFDDKIVLGVLSIVTIIALVSTDV 156
           L +HP+S+I F+++F+GW+  YF RD    +V+  +  DDKIVL +LS+VT++ALV TDV
Sbjct: 95  LIYHPMSMIAFIVVFIGWILLYFSRDANDSIVISGKEVDDKIVLVLLSLVTVLALVYTDV 154

Query: 157 GSNVLGALITGVAVVGLHAAFRITADHFLDEETAAEGGLLSVVGNQQQQQRGYTRI 211
           G NVL +LI G+ +VG H AFR T D FLDEE+A  GGL+S  G+  +    YT I
Sbjct: 155 GENVLVSLIIGLLIVGAHGAFRNTDDLFLDEESARRGGLVS-AGSGNRPPSSYTPI 209

[Close]

BLAST of Carg22989 vs. TAIR10
Match: AT3G13720.1 (PRA1 (Prenylated rab acceptor) family protein)

HSP 1 Score: 149.4 bits (376), Expect = 2.4e-36
Identity = 84/179 (46.93%), Postives = 117/179 (65.36%), Query Frame = 0


Query: 10  YGTVPSPAASTSAGVPPSFPSSSSFLERAKSTTQSLIATRRPWRELFDFSAFSLPFSYDD 69
           YG +P     TS+   P     S  L RAK   ++ +ATRR WR +FDF +  LP    D
Sbjct: 4   YGAIP-----TSSHASPLVDVES--LSRAKHRIKAGLATRRAWRVMFDFHSMGLPHGVSD 63

Query: 70  AMARIRQNVDYFRVNYALVMLIIVFLSLFWHPISIIVFLLIFVGWLFCYFLRDQPLVLFN 129
           A  RI+ N+ YFR+NYA+V+LI++F SL WHP S+IVF ++ V W+F YFLRD+P+ LF 
Sbjct: 64  AFTRIKTNLAYFRMNYAIVVLIVIFFSLIWHPTSLIVFTVLVVVWIFLYFLRDEPIKLFR 123

Query: 130 QTFDDKIVLGVLSIVTIIALVSTDVGSNVLGALITGVAVVGLHAAFRITADHFLDEETA 189
              DD+ VL VLS++T++ L+ T+   N++GAL+TG  +V +H+  R T D FLDEE A
Sbjct: 124 FQIDDRTVLIVLSVLTVVLLLLTNATFNIVGALVTGAVLVLIHSVVRKTEDLFLDEEAA 175

[Close]

BLAST of Carg22989 vs. TAIR10
Match: AT1G55190.1 (PRA1 (Prenylated rab acceptor) family protein)

HSP 1 Score: 146.0 bits (367), Expect = 2.7e-35
Identity = 84/189 (44.44%), Postives = 124/189 (65.61%), Query Frame = 0


Query: 10  YGTVPSPAASTSAGVPPSFPSSSSFLERAKSTTQSLIATRRPWRELFDFSAFSLPFSYDD 69
           YG +P+ +        PS      ++ RAK   +S +ATRRPW+ +FDF + +LP  + D
Sbjct: 4   YGAIPTSS-------HPSPAIDLEYISRAKHRIKSGLATRRPWKSMFDFESMTLPHGFFD 63

Query: 70  AMARIRQNVDYFRVNYALVMLIIVFLSLFWHPISIIVFLLIFVGWLFCYFLRDQPLVLFN 129
           A++RI+ N+ YFR NYA+ +L I+FLSL +HP S+IV  ++ V W+F YFLRD+PLV+F 
Sbjct: 64  AISRIKTNLGYFRANYAIGVLFILFLSLLYHPTSLIVLSILVVFWIFLYFLRDEPLVVFG 123

Query: 130 QTFDDKIVLGVLSIVTIIALVSTDVGSNVLGALITGVAVVGLHAAFRITADHFLDEETAA 189
              DD+ VL  LS++T++ L+ T   SN+LG+L+T   +V +HAA R + + FLDEE AA
Sbjct: 124 YQIDDRTVLIGLSVLTVVMLLLTHATSNILGSLLTAAVLVLIHAAVRRSDNLFLDEEAAA 183

Query: 190 ---EGGLLS 196
                GL+S
Sbjct: 184 VTEASGLMS 185

[Close]

BLAST of Carg22989 vs. TAIR10
Match: AT5G05380.1 (prenylated RAB acceptor 1.B3)

HSP 1 Score: 139.4 bits (350), Expect = 2.5e-33
Identity = 80/173 (46.24%), Postives = 111/173 (64.16%), Query Frame = 0


Query: 25  PPSFPSSSSFLERAKSTTQSLIATRRPWRELFDFSAFSLPFSYDDAMARIRQNVDYFRVN 84
           P S P+  +FL R  S+ +  ++ RRPW EL D SA S P S  DA +RIR+N+ YF+VN
Sbjct: 23  PVSTPAFRTFLSRLSSSIRQSLSQRRPWLELVDRSAISRPESLTDAYSRIRRNLPYFKVN 82

Query: 85  YALVMLIIVFLSLFWHPISIIVFLLIFVGWLFCYFLR--DQPLVLFNQTFDDKIVLGVLS 144
           Y  ++ +++ LSL  HP S++V L +F  W+F Y  R  DQPLV+  +TF D+  LGVL 
Sbjct: 83  YVTIVSLVLALSLLSHPFSLLVLLCLFCAWIFLYLFRPSDQPLVVLGRTFSDRETLGVLV 142

Query: 145 IVTIIALVSTDVGSNVLGALITGVAVVGLHAAFRITADHFLDEETAAEGGLLS 196
           I+TI+ +  T VGS +  AL+ G  +V LH AFR+  D FLD++  A  GLLS
Sbjct: 143 ILTIVVVFLTSVGSLLTSALMIGFGIVCLHGAFRVPEDLFLDDQEPANTGLLS 195

[Close]

BLAST of Carg22989 vs. TAIR10
Match: AT2G40380.1 (prenylated RAB acceptor 1.B2)

HSP 1 Score: 133.7 bits (335), Expect = 1.4e-31
Identity = 79/189 (41.80%), Postives = 118/189 (62.43%), Query Frame = 0


Query: 13  VPSPAASTSAGVPPSFPSSSSFLERAKSTTQSLIATRRPWRELFDFSAFSLPFSYDDAMA 72
           V +  A+T +  P +  +  +FL R  S+ +  ++ RRPW EL D S+F+ P S  D+ +
Sbjct: 10  VTNQQAATQSQPPINSHAFRTFLSRLSSSLRESLSQRRPWLELVDRSSFARPDSLTDSFS 69

Query: 73  RIRQNVDYFRVNYALVMLIIVFLSLFWHPISIIVFLLIFVGWLFCYFLR--DQPLVLFNQ 132
           RIR+N+ YF+VNY+ ++ +++  SL  HP S++V L +   W+F Y  R  DQPLVLF +
Sbjct: 70  RIRKNLAYFKVNYSAIVSLVLAFSLLSHPFSLLVLLSLLGSWMFLYLFRSSDQPLVLFGR 129

Query: 133 TFDDKIVLGVLSIVTIIALVSTDVGSNVLGALITGVAVVGLHAAFRITADHFLDEETAAE 192
           +F D+  L  L + TI+ +  T VGS +  AL  G+A+V LH AFR+  D FLDE+  A 
Sbjct: 130 SFSDRETLLGLVLTTIVVVFMTSVGSLLTSALTIGIAIVCLHGAFRVPDDLFLDEQEPAN 189

Query: 193 GGLLSVVGN 200
            GLLS +GN
Sbjct: 190 AGLLSFIGN 198

[Close]

BLAST of Carg22989 vs. Swiss-Prot
Match: sp|Q9FRR1|PRA1E_ARATH (PRA1 family protein E OS=Arabidopsis thaliana OX=3702 GN=PRA1E PE=1 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 4.3e-43
Identity = 97/176 (55.11%), Postives = 126/176 (71.59%), Query Frame = 0


Query: 37  RAKSTTQSLIATRRPWRELFDFSAFSLPFSYDDAMARIRQNVDYFRVNYALVMLIIVFLS 96
           RAK TTQS+I T RPWRE+ D SA SLP  YD+AMA ++ N+ YFR NYAL +L IVFL 
Sbjct: 35  RAKQTTQSMITTLRPWREILDLSALSLPRGYDEAMAHLKHNISYFRGNYALAVLAIVFLG 94

Query: 97  LFWHPISIIVFLLIFVGWLFCYFLRD--QPLVLFNQTFDDKIVLGVLSIVTIIALVSTDV 156
           L +HP+S+I F+++F+GW+  YF RD    +V+  +  DDKIVL +LS+VT++ALV TDV
Sbjct: 95  LIYHPMSMIAFIVVFIGWILLYFSRDANDSIVISGKEVDDKIVLVLLSLVTVLALVYTDV 154

Query: 157 GSNVLGALITGVAVVGLHAAFRITADHFLDEETAAEGGLLSVVGNQQQQQRGYTRI 211
           G NVL +LI G+ +VG H AFR T D FLDEE+A  GGL+S  G+  +    YT I
Sbjct: 155 GENVLVSLIIGLLIVGAHGAFRNTDDLFLDEESARRGGLVS-AGSGNRPPSSYTPI 209

[Close]

BLAST of Carg22989 vs. Swiss-Prot
Match: sp|Q9LIC6|PR1F3_ARATH (PRA1 family protein F3 OS=Arabidopsis thaliana OX=3702 GN=PRA1F3 PE=1 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.3e-35
Identity = 84/179 (46.93%), Postives = 117/179 (65.36%), Query Frame = 0


Query: 10  YGTVPSPAASTSAGVPPSFPSSSSFLERAKSTTQSLIATRRPWRELFDFSAFSLPFSYDD 69
           YG +P     TS+   P     S  L RAK   ++ +ATRR WR +FDF +  LP    D
Sbjct: 4   YGAIP-----TSSHASPLVDVES--LSRAKHRIKAGLATRRAWRVMFDFHSMGLPHGVSD 63

Query: 70  AMARIRQNVDYFRVNYALVMLIIVFLSLFWHPISIIVFLLIFVGWLFCYFLRDQPLVLFN 129
           A  RI+ N+ YFR+NYA+V+LI++F SL WHP S+IVF ++ V W+F YFLRD+P+ LF 
Sbjct: 64  AFTRIKTNLAYFRMNYAIVVLIVIFFSLIWHPTSLIVFTVLVVVWIFLYFLRDEPIKLFR 123

Query: 130 QTFDDKIVLGVLSIVTIIALVSTDVGSNVLGALITGVAVVGLHAAFRITADHFLDEETA 189
              DD+ VL VLS++T++ L+ T+   N++GAL+TG  +V +H+  R T D FLDEE A
Sbjct: 124 FQIDDRTVLIVLSVLTVVLLLLTNATFNIVGALVTGAVLVLIHSVVRKTEDLFLDEEAA 175

[Close]

BLAST of Carg22989 vs. Swiss-Prot
Match: sp|Q9C889|PR1F2_ARATH (PRA1 family protein F2 OS=Arabidopsis thaliana OX=3702 GN=PRA1F2 PE=1 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.8e-34
Identity = 84/189 (44.44%), Postives = 124/189 (65.61%), Query Frame = 0


Query: 10  YGTVPSPAASTSAGVPPSFPSSSSFLERAKSTTQSLIATRRPWRELFDFSAFSLPFSYDD 69
           YG +P+ +        PS      ++ RAK   +S +ATRRPW+ +FDF + +LP  + D
Sbjct: 4   YGAIPTSS-------HPSPAIDLEYISRAKHRIKSGLATRRPWKSMFDFESMTLPHGFFD 63

Query: 70  AMARIRQNVDYFRVNYALVMLIIVFLSLFWHPISIIVFLLIFVGWLFCYFLRDQPLVLFN 129
           A++RI+ N+ YFR NYA+ +L I+FLSL +HP S+IV  ++ V W+F YFLRD+PLV+F 
Sbjct: 64  AISRIKTNLGYFRANYAIGVLFILFLSLLYHPTSLIVLSILVVFWIFLYFLRDEPLVVFG 123

Query: 130 QTFDDKIVLGVLSIVTIIALVSTDVGSNVLGALITGVAVVGLHAAFRITADHFLDEETAA 189
              DD+ VL  LS++T++ L+ T   SN+LG+L+T   +V +HAA R + + FLDEE AA
Sbjct: 124 YQIDDRTVLIGLSVLTVVMLLLTHATSNILGSLLTAAVLVLIHAAVRRSDNLFLDEEAAA 183

Query: 190 ---EGGLLS 196
                GL+S
Sbjct: 184 VTEASGLMS 185

[Close]

BLAST of Carg22989 vs. Swiss-Prot
Match: sp|Q9FLB6|PR1B3_ARATH (PRA1 family protein B3 OS=Arabidopsis thaliana OX=3702 GN=PRA1B3 PE=1 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 4.5e-32
Identity = 80/173 (46.24%), Postives = 111/173 (64.16%), Query Frame = 0


Query: 25  PPSFPSSSSFLERAKSTTQSLIATRRPWRELFDFSAFSLPFSYDDAMARIRQNVDYFRVN 84
           P S P+  +FL R  S+ +  ++ RRPW EL D SA S P S  DA +RIR+N+ YF+VN
Sbjct: 23  PVSTPAFRTFLSRLSSSIRQSLSQRRPWLELVDRSAISRPESLTDAYSRIRRNLPYFKVN 82

Query: 85  YALVMLIIVFLSLFWHPISIIVFLLIFVGWLFCYFLR--DQPLVLFNQTFDDKIVLGVLS 144
           Y  ++ +++ LSL  HP S++V L +F  W+F Y  R  DQPLV+  +TF D+  LGVL 
Sbjct: 83  YVTIVSLVLALSLLSHPFSLLVLLCLFCAWIFLYLFRPSDQPLVVLGRTFSDRETLGVLV 142

Query: 145 IVTIIALVSTDVGSNVLGALITGVAVVGLHAAFRITADHFLDEETAAEGGLLS 196
           I+TI+ +  T VGS +  AL+ G  +V LH AFR+  D FLD++  A  GLLS
Sbjct: 143 ILTIVVVFLTSVGSLLTSALMIGFGIVCLHGAFRVPEDLFLDDQEPANTGLLS 195

[Close]

BLAST of Carg22989 vs. Swiss-Prot
Match: sp|Q9SIY7|PR1B2_ARATH (PRA1 family protein B2 OS=Arabidopsis thaliana OX=3702 GN=PRA1B2 PE=1 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.5e-30
Identity = 79/189 (41.80%), Postives = 118/189 (62.43%), Query Frame = 0


Query: 13  VPSPAASTSAGVPPSFPSSSSFLERAKSTTQSLIATRRPWRELFDFSAFSLPFSYDDAMA 72
           V +  A+T +  P +  +  +FL R  S+ +  ++ RRPW EL D S+F+ P S  D+ +
Sbjct: 10  VTNQQAATQSQPPINSHAFRTFLSRLSSSLRESLSQRRPWLELVDRSSFARPDSLTDSFS 69

Query: 73  RIRQNVDYFRVNYALVMLIIVFLSLFWHPISIIVFLLIFVGWLFCYFLR--DQPLVLFNQ 132
           RIR+N+ YF+VNY+ ++ +++  SL  HP S++V L +   W+F Y  R  DQPLVLF +
Sbjct: 70  RIRKNLAYFKVNYSAIVSLVLAFSLLSHPFSLLVLLSLLGSWMFLYLFRSSDQPLVLFGR 129

Query: 133 TFDDKIVLGVLSIVTIIALVSTDVGSNVLGALITGVAVVGLHAAFRITADHFLDEETAAE 192
           +F D+  L  L + TI+ +  T VGS +  AL  G+A+V LH AFR+  D FLDE+  A 
Sbjct: 130 SFSDRETLLGLVLTTIVVVFMTSVGSLLTSALTIGIAIVCLHGAFRVPDDLFLDEQEPAN 189

Query: 193 GGLLSVVGN 200
            GLLS +GN
Sbjct: 190 AGLLSFIGN 198

[Close]

BLAST of Carg22989 vs. TrEMBL
Match: tr|A0A0A0LIB9|A0A0A0LIB9_CUCSA (PRA1 family protein OS=Cucumis sativus OX=3659 GN=Csa_2G010300 PE=3 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 4.4e-93
Identity = 192/214 (89.72%), Postives = 200/214 (93.46%), Query Frame = 0


Query: 1   MSPVKFSAGYGTVPSPAA----STSAGVPPSFPSSSSFLERAKSTTQSLIATRRPWRELF 60
           MS VKFS+GYG VPS AA    +TS+G PPSFPSSSSFLERAK+TTQSLIAT+RPWRELF
Sbjct: 1   MSSVKFSSGYGAVPSQAAATIPTTSSGAPPSFPSSSSFLERAKTTTQSLIATQRPWRELF 60

Query: 61  DFSAFSLPFSYDDAMARIRQNVDYFRVNYALVMLIIVFLSLFWHPISIIVFLLIFVGWLF 120
           DFSAFSLPFSYDDAMARIRQNV+YFRVNYALVMLIIVFLSLFWHPISIIVFLLIFV WLF
Sbjct: 61  DFSAFSLPFSYDDAMARIRQNVNYFRVNYALVMLIIVFLSLFWHPISIIVFLLIFVAWLF 120

Query: 121 CYFLRDQPLVLFNQTFDDKIVLGVLSIVTIIALVSTDVGSNVLGALITGVAVVGLHAAFR 180
            YF RDQPLVLFNQTFDDK+VLGVLSI TIIALVSTDVGSNVLGALITGV VVGLH+AFR
Sbjct: 121 FYFFRDQPLVLFNQTFDDKVVLGVLSIFTIIALVSTDVGSNVLGALITGVTVVGLHSAFR 180

Query: 181 ITADHFLDEETAAEGGLLSVVGNQQQQQRGYTRI 211
           ITADHFLDEETAAEGGLLSVVGN QQQQRGYTRI
Sbjct: 181 ITADHFLDEETAAEGGLLSVVGN-QQQQRGYTRI 213

[Close]

BLAST of Carg22989 vs. TrEMBL
Match: tr|A0A1S3C2L3|A0A1S3C2L3_CUCME (PRA1 family protein OS=Cucumis melo OX=3656 GN=LOC103496149 PE=3 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 3.1e-86
Identity = 184/214 (85.98%), Postives = 189/214 (88.32%), Query Frame = 0


Query: 1   MSPVKFSAGYGTVPSPAAST----SAGVPPSFPSSSSFLERAKSTTQSLIATRRPWRELF 60
           MS VKFS+GYG VPSPAA+T                 FLERAK+TTQSLIAT RPWRELF
Sbjct: 1   MSSVKFSSGYGAVPSPAAATIPTXXXXXXXXXXXXXXFLERAKTTTQSLIATLRPWRELF 60

Query: 61  DFSAFSLPFSYDDAMARIRQNVDYFRVNYALVMLIIVFLSLFWHPISIIVFLLIFVGWLF 120
           DFSAFSLPFSYDDAMARIRQNV+YFRVNYALVMLIIVFLSLFWHPISIIVFLLIFV WLF
Sbjct: 61  DFSAFSLPFSYDDAMARIRQNVNYFRVNYALVMLIIVFLSLFWHPISIIVFLLIFVAWLF 120

Query: 121 CYFLRDQPLVLFNQTFDDKIVLGVLSIVTIIALVSTDVGSNVLGALITGVAVVGLHAAFR 180
            YF RDQPLVLFNQTFDDK+VLGVLSI TIIALVSTDVGSNVLGALITGVAVVGLHAAFR
Sbjct: 121 FYFFRDQPLVLFNQTFDDKVVLGVLSIFTIIALVSTDVGSNVLGALITGVAVVGLHAAFR 180

Query: 181 ITADHFLDEETAAEGGLLSVVGNQQQQQRGYTRI 211
           ITADHFLDEETAAEGGLLSVVGN QQQQRGYTRI
Sbjct: 181 ITADHFLDEETAAEGGLLSVVGN-QQQQRGYTRI 213

[Close]

BLAST of Carg22989 vs. TrEMBL
Match: tr|F6HVL4|F6HVL4_VITVI (PRA1 family protein OS=Vitis vinifera OX=29760 GN=VIT_14s0081g00090 PE=3 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.3e-57
Identity = 127/208 (61.06%), Postives = 157/208 (75.48%), Query Frame = 0


Query: 4   VKFSAGYGTVPSPAASTSAGVPPSFPSSS-SFLERAKSTTQSLIATRRPWRELFDFSAFS 63
           +K  AGYGT+P    + SA VP S  S   +F+ RA   TQ+L+ATRRPWRE  D+S  S
Sbjct: 3   LKSPAGYGTLP----NASAAVPSSSTSEQFTFISRATQRTQTLMATRRPWREFLDYSVLS 62

Query: 64  LPFSYDDAMARIRQNVDYFRVNYALVMLIIVFLSLFWHPISIIVFLLIFVGWLFCYFLRD 123
            P +Y DAMARI++NV+YFRVNYA+VML I+F+SL WHP S+IVFL+IFV W F YF RD
Sbjct: 63  RPHNYSDAMARIKRNVNYFRVNYAMVMLFILFVSLLWHPTSMIVFLIIFVAWFFLYFFRD 122

Query: 124 QPLVLFNQTFDDKIVLGVLSIVTIIALVSTDVGSNVLGALITGVAVVGLHAAFRITADHF 183
            P+VLF+QT DD++VL +L ++T++ALV TDVG NVL +LI GVAVVGLHAAFR T D F
Sbjct: 123 NPVVLFHQTIDDRVVLVLLGLITVVALVFTDVGLNVLVSLIIGVAVVGLHAAFRGTEDLF 182

Query: 184 LDEETAAEGGLLSVVGNQQQQQRGYTRI 211
           L+EE  AEGGLLSV G QQ +   YTR+
Sbjct: 183 LNEEEVAEGGLLSVAGGQQLRPTNYTRV 206

[Close]

BLAST of Carg22989 vs. TrEMBL
Match: tr|A5AWF7|A5AWF7_VITVI (PRA1 family protein OS=Vitis vinifera OX=29760 GN=VITISV_021777 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.8e-57
Identity = 127/208 (61.06%), Postives = 157/208 (75.48%), Query Frame = 0


Query: 4   VKFSAGYGTVPSPAASTSAGVPPSFPSSS-SFLERAKSTTQSLIATRRPWRELFDFSAFS 63
           +K  AGYGT+P    + S  VP S  S   +F+ RA   TQ+L+ATRRPWRE  D+SA S
Sbjct: 3   LKSPAGYGTLP----NASPAVPSSSTSEQFTFISRATQRTQTLMATRRPWREFLDYSALS 62

Query: 64  LPFSYDDAMARIRQNVDYFRVNYALVMLIIVFLSLFWHPISIIVFLLIFVGWLFCYFLRD 123
            P +Y DAMARI++NV+YFRVNYA+VML I+F+SL WHP S+IVFL+IFV W F YF RD
Sbjct: 63  RPHNYSDAMARIKRNVNYFRVNYAMVMLFILFVSLLWHPTSMIVFLIIFVAWFFLYFFRD 122

Query: 124 QPLVLFNQTFDDKIVLGVLSIVTIIALVSTDVGSNVLGALITGVAVVGLHAAFRITADHF 183
            P+VLF+QT DD++VL +L ++T++ALV TDVG NVL +LI GVAVVGLHAAFR T D F
Sbjct: 123 NPVVLFHQTIDDRVVLVLLGLITVVALVFTDVGLNVLVSLIIGVAVVGLHAAFRGTEDLF 182

Query: 184 LDEETAAEGGLLSVVGNQQQQQRGYTRI 211
           L+EE  AEGGLLSV G QQ +   YTR+
Sbjct: 183 LNEEEVAEGGLLSVAGGQQLRPTNYTRV 206

[Close]

BLAST of Carg22989 vs. TrEMBL
Match: tr|A0A1U8BAA2|A0A1U8BAA2_NELNU (PRA1 family protein OS=Nelumbo nucifera OX=4432 GN=LOC104612431 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 4.3e-56
Identity = 119/193 (61.66%), Postives = 150/193 (77.72%), Query Frame = 0


Query: 8   AGYGTVPSPAASTSAGVPPSFPSSSSFLERAKSTTQSLIATRRPWRELFDFSAFSLPFSY 67
           AGYGTVPS AASTS     +  S   F  RAK   +S+ ATRRPWREL D SAF  P+SY
Sbjct: 7   AGYGTVPSAAASTST----TSGSGIEFFSRAKERGKSIYATRRPWRELADLSAFGRPYSY 66

Query: 68  DDAMARIRQNVDYFRVNYALVMLIIVFLSLFWHPISIIVFLLIFVGWLFCYFLRDQPLVL 127
            +AM RIR+N+ YFRVNYA+++L+I+FLSL WHP+S+IVFL++FVGW F YF RD+PLV+
Sbjct: 67  GEAMVRIRRNISYFRVNYAIIVLLILFLSLLWHPVSMIVFLIVFVGWFFLYFFRDEPLVV 126

Query: 128 FNQTFDDKIVLGVLSIVTIIALVSTDVGSNVLGALITGVAVVGLHAAFRITADHFLDEET 187
           FN+TFDD++VL +LS++TI+AL+ T V  NVL +LI G  +V LHA FR T D FL+E+ 
Sbjct: 127 FNRTFDDRVVLAILSVITIVALIFTHVWLNVLVSLIIGAVIVFLHATFRTTEDQFLNEQE 186

Query: 188 AAEGGLLSVVGNQ 201
           AAEGGLLSVVG+Q
Sbjct: 187 AAEGGLLSVVGSQ 195

The following BLAST results are available for this feature:

BLAST of Carg22989 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946131.1	9.0e-106	100.00	PRA1 family protein E [Cucurbita moschata]	[more]
XP_023521163.1	1.3e-101	99.51	PRA1 family protein E-like, partial [Cucurbita pepo subsp. pepo]	[more]
XP_004139244.1	6.7e-93	89.72	PREDICTED: PRA1 family protein E-like [Cucumis sativus] >KGN60794.1 hypothetical...	[more]
XP_022999099.1	1.1e-90	99.46	PRA1 family protein E-like [Cucurbita maxima]	[more]
XP_008456115.1	4.6e-86	85.98	PREDICTED: PRA1 family protein E [Cucumis melo] >XP_008456124.1 PREDICTED: PRA1 ...	[more]

BLAST of Carg22989 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08770.1	2.4e-44	55.11	prenylated RAB acceptor 1.E	[more]
AT3G13720.1	2.4e-36	46.93	PRA1 (Prenylated rab acceptor) family protein	[more]
AT1G55190.1	2.7e-35	44.44	PRA1 (Prenylated rab acceptor) family protein	[more]
AT5G05380.1	2.5e-33	46.24	prenylated RAB acceptor 1.B3	[more]
AT2G40380.1	1.4e-31	41.80	prenylated RAB acceptor 1.B2	[more]

BLAST of Carg22989 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FRR1\|PRA1E_ARATH	4.3e-43	55.11	PRA1 family protein E OS=Arabidopsis thaliana OX=3702 GN=PRA1E PE=1 SV=1	[more]
sp\|Q9LIC6\|PR1F3_ARATH	4.3e-35	46.93	PRA1 family protein F3 OS=Arabidopsis thaliana OX=3702 GN=PRA1F3 PE=1 SV=1	[more]
sp\|Q9C889\|PR1F2_ARATH	4.8e-34	44.44	PRA1 family protein F2 OS=Arabidopsis thaliana OX=3702 GN=PRA1F2 PE=1 SV=1	[more]
sp\|Q9FLB6\|PR1B3_ARATH	4.5e-32	46.24	PRA1 family protein B3 OS=Arabidopsis thaliana OX=3702 GN=PRA1B3 PE=1 SV=1	[more]
sp\|Q9SIY7\|PR1B2_ARATH	2.5e-30	41.80	PRA1 family protein B2 OS=Arabidopsis thaliana OX=3702 GN=PRA1B2 PE=1 SV=1	[more]

BLAST of Carg22989 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LIB9\|A0A0A0LIB9_CUCSA	4.4e-93	89.72	PRA1 family protein OS=Cucumis sativus OX=3659 GN=Csa_2G010300 PE=3 SV=1	[more]
tr\|A0A1S3C2L3\|A0A1S3C2L3_CUCME	3.1e-86	85.98	PRA1 family protein OS=Cucumis melo OX=3656 GN=LOC103496149 PE=3 SV=1	[more]
tr\|F6HVL4\|F6HVL4_VITVI	1.3e-57	61.06	PRA1 family protein OS=Vitis vinifera OX=29760 GN=VIT_14s0081g00090 PE=3 SV=1	[more]
tr\|A5AWF7\|A5AWF7_VITVI	1.8e-57	61.06	PRA1 family protein OS=Vitis vinifera OX=29760 GN=VITISV_021777 PE=3 SV=1	[more]
tr\|A0A1U8BAA2\|A0A1U8BAA2_NELNU	4.3e-56	61.66	PRA1 family protein OS=Nelumbo nucifera OX=4432 GN=LOC104612431 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004895	Prenylated_rab_accept_PRA1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22989-RA	Carg22989-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004895	Prenylated rab acceptor PRA1	PFAM	PF03208	PRA1	coord: 46..186 e-value: 8.1E-48 score: 161.6
IPR004895	Prenylated rab acceptor PRA1	PANTHER	PTHR19317	PRENYLATED RAB ACCEPTOR 1-RELATED	coord: 14..210
None	No IPR available	PANTHER	PTHR19317:SF16	PRA1 FAMILY PROTEIN E	coord: 14..210

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22989	Cla019796	Watermelon (97103) v1	carwmB1071
Carg22989	Csa2G010300	Cucumber (Chinese Long) v2	carcuB1087
Carg22989	MELO3C004391	Melon (DHL92) v3.5.1	carmeB1042
Carg22989	ClCG02G016740	Watermelon (Charleston Gray)	carwcgB1042
Carg22989	CSPI02G02850	Wild cucumber (PI 183967)	carcpiB1109
Carg22989	Cucsa.133150	Cucumber (Gy14) v1	carcgyB1188
Carg22989	CmaCh05G012110	Cucurbita maxima (Rimu)	carcmaB1484
Carg22989	CmaCh12G011270	Cucurbita maxima (Rimu)	carcmaB1483
Carg22989	CmoCh05G012330	Cucurbita moschata (Rifu)	carcmoB1442
Carg22989	CmoCh12G011470	Cucurbita moschata (Rifu)	carcmoB1441
Carg22989	Lsi11G004350	Bottle gourd (USVL1VR-Ls)	carlsiB978
Carg22989	Cp4.1LG00g04290	Cucurbita pepo (Zucchini)	carcpeB1493
Carg22989	Cp4.1LG07g09520	Cucurbita pepo (Zucchini)	carcpeB1496
Carg22989	CsGy2G002960	Cucumber (Gy14) v2	carcgybB1053
Carg22989	MELO3C004391.2	Melon (DHL92) v3.6.1	carmedB1056
Carg22989	CsaV3_2G004000	Cucumber (Chinese Long) v3	carcucB1120
Carg22989	Cla97C02G042520	Watermelon (97103) v2	carwmbB1129
Carg22989	Bhi06G001532	Wax gourd	carwgoB1260

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg22989	Carg17601	Silver-seed gourd	carcarB588
Carg22989	Carg08987	Silver-seed gourd	carcarB614

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22989	Cucurbita pepo (Zucchini)	carcpeB1494