Carg22628 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22628
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Polcalcin
Location	Cucurbita_argyrosperma_scaffold_093 : 405246 .. 405500 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAGTCGGAGGCAATGAGGGCAGAATGCGAGCGAATCTTCAACCGCTTCGACTGCAACGGGGACGGCAAGATCTCGCTGTCGGAGTTGGAGAACGCTCTCCACGCACTTGGCTCCTCCTCGCCGGAGGAGGTCCGGCGGCGGATGTCGGAGATCGACAAGGACGGCAACGGCTTCATTTCCCTAGATGAACTGTGCGAGTTTCAGAGGGCTAATCCCGATTTGATGAAGGAGGTCTGCAAAAGGCTTTAG

mRNA sequence

ATGGCGGAGTCGGAGGCAATGAGGGCAGAATGCGAGCGAATCTTCAACCGCTTCGACTGCAACGGGGACGGCAAGATCTCGCTGTCGGAGTTGGAGAACGCTCTCCACGCACTTGGCTCCTCCTCGCCGGAGGAGGTCCGGCGGCGGATGTCGGAGATCGACAAGGACGGCAACGGCTTCATTTCCCTAGATGAACTGTGCGAGTTTCAGAGGGCTAATCCCGATTTGATGAAGGAGGTCTGCAAAAGGCTTTAG

Coding sequence (CDS)

ATGGCGGAGTCGGAGGCAATGAGGGCAGAATGCGAGCGAATCTTCAACCGCTTCGACTGCAACGGGGACGGCAAGATCTCGCTGTCGGAGTTGGAGAACGCTCTCCACGCACTTGGCTCCTCCTCGCCGGAGGAGGTCCGGCGGCGGATGTCGGAGATCGACAAGGACGGCAACGGCTTCATTTCCCTAGATGAACTGTGCGAGTTTCAGAGGGCTAATCCCGATTTGATGAAGGAGGTCTGCAAAAGGCTTTAG

Protein sequence

MAESEAMRAECERIFNRFDCNGDGKISLSELENALHALGSSSPEEVRRRMSEIDKDGNGFISLDELCEFQRANPDLMKEVCKRL

Homology

[Close]

BLAST of Carg22628 vs. NCBI nr
Match: XP_022929895.1 (polcalcin Phl p 7-like [Cucurbita moschata])

HSP 1 Score: 172.6 bits (436), Expect = 5.8e-40
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MAESEAMRAECERIFNRFDCNGDGKISLSELENALHALGSSSPEEVRRRMSEIDKDGNGF 60
          MAESEAMRAECERIFNRFDCNGDGKISLSELENALHALGSSSPEEVRRRMSEIDKDGNGF
Sbjct: 1  MAESEAMRAECERIFNRFDCNGDGKISLSELENALHALGSSSPEEVRRRMSEIDKDGNGF 60

Query: 61 ISLDELCEFQRANPDLMKEVCKRL 85
          ISLDELCEFQRANPDLMKEVCKRL
Sbjct: 61 ISLDELCEFQRANPDLMKEVCKRL 84

[Close]

BLAST of Carg22628 vs. NCBI nr
Match: XP_023549323.1 (polcalcin Phl p 7-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 169.9 bits (429), Expect = 3.8e-39
Identity = 82/84 (97.62%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MAESEAMRAECERIFNRFDCNGDGKISLSELENALHALGSSSPEEVRRRMSEIDKDGNGF 60
          MAESEA+RAECERIFNRFDCNGDGKISLSELENALHALGSSSPEEVRRRMSEIDKDGNGF
Sbjct: 1  MAESEAIRAECERIFNRFDCNGDGKISLSELENALHALGSSSPEEVRRRMSEIDKDGNGF 60

Query: 61 ISLDELCEFQRANPDLMKEVCKRL 85
          ISLDELCEFQRANPDLMKEVC+RL
Sbjct: 61 ISLDELCEFQRANPDLMKEVCRRL 84

[Close]

BLAST of Carg22628 vs. NCBI nr
Match: XP_022992461.1 (polcalcin Phl p 7-like [Cucurbita maxima])

HSP 1 Score: 166.8 bits (421), Expect = 3.2e-38
Identity = 82/84 (97.62%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 1  MAESEAMRAECERIFNRFDCNGDGKISLSELENALHALGSSSPEEVRRRMSEIDKDGNGF 60
          MAESEA+RAECERIFNRFDCNGDGKISLSELENALHALGSSSPEEVRRRMSEIDKDGNGF
Sbjct: 1  MAESEAIRAECERIFNRFDCNGDGKISLSELENALHALGSSSPEEVRRRMSEIDKDGNGF 60

Query: 61 ISLDELCEFQRANPDLMKEVCKRL 85
          ISLDEL EFQRANPDLMKEVCKRL
Sbjct: 61 ISLDELFEFQRANPDLMKEVCKRL 84

[Close]

BLAST of Carg22628 vs. NCBI nr
Match: KGN45979.1 (hypothetical protein Csa_6G041150 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 2.6e-32
Identity = 71/84 (84.52%), Postives = 77/84 (91.67%), Query Frame = 0


Query: 1  MAESEAMRAECERIFNRFDCNGDGKISLSELENALHALGSSSPEEVRRRMSEIDKDGNGF 60
          MA+S+  R ECERIF RFD NGDGKISLSELE ALHALGSS+PEEV RRMSEIDKDGNG+
Sbjct: 1  MADSDGNRMECERIFKRFDVNGDGKISLSELEAALHALGSSAPEEVGRRMSEIDKDGNGY 60

Query: 61 ISLDELCEFQRANPDLMKEVCKRL 85
          ISL+ELC+FQRANPDLMKEVCKRL
Sbjct: 61 ISLEELCDFQRANPDLMKEVCKRL 84

[Close]

BLAST of Carg22628 vs. NCBI nr
Match: XP_008445690.1 (PREDICTED: polcalcin Syr v 3-like [Cucumis melo])

HSP 1 Score: 143.7 bits (361), Expect = 2.9e-31
Identity = 71/84 (84.52%), Postives = 77/84 (91.67%), Query Frame = 0


Query: 1  MAESEAMRAECERIFNRFDCNGDGKISLSELENALHALGSSSPEEVRRRMSEIDKDGNGF 60
          MA+S+  + ECERIF RFD NGDGKISLSELE ALHALGSS+PEEV RRMSEIDKDGNGF
Sbjct: 1  MADSDG-KMECERIFKRFDINGDGKISLSELETALHALGSSAPEEVGRRMSEIDKDGNGF 60

Query: 61 ISLDELCEFQRANPDLMKEVCKRL 85
          ISL+ELC+FQRANPDLMKEVCKRL
Sbjct: 61 ISLEELCDFQRANPDLMKEVCKRL 83

[Close]

BLAST of Carg22628 vs. TAIR10
Match: AT3G03430.1 (Calcium-binding EF-hand family protein)

HSP 1 Score: 84.3 bits (207), Expect = 3.8e-17
Identity = 41/75 (54.67%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 8  RAECERIFNRFDCNGDGKISLSELENALHALGSSSPEEVRRRMSEIDKDGNGFISLDELC 67
          +AE +RIF +FD NGDGKIS +EL +AL  LGS + E+++R M+EID DG+G+IS  E  
Sbjct: 7  KAEHDRIFKKFDANGDGKISAAELGDALKNLGSVTHEDIKRMMAEIDTDGDGYISYQEFI 66

Query: 68 EFQRANPDLMKEVCK 83
          +F  AN  LMK+V K
Sbjct: 67 DFASANRGLMKDVAK 81

[Close]

BLAST of Carg22628 vs. TAIR10
Match: AT5G17480.1 (pollen calcium-binding protein 1)

HSP 1 Score: 84.3 bits (207), Expect = 3.8e-17
Identity = 42/75 (56.00%), Postives = 54/75 (72.00%), Query Frame = 0


Query: 8  RAECERIFNRFDCNGDGKISLSELENALHALGSSSPEEVRRRMSEIDKDGNGFISLDELC 67
          +AE +RIF +FD NGDGKIS +ELE AL  LGS + ++V+R M+EID DG+G IS  E  
Sbjct: 7  KAEHDRIFKKFDANGDGKISAAELEEALKTLGSVTADDVKRMMAEIDTDGDGNISYQEFT 66

Query: 68 EFQRANPDLMKEVCK 83
          +F  AN  LMK+V K
Sbjct: 67 DFAGANRGLMKDVAK 81

[Close]

BLAST of Carg22628 vs. TAIR10
Match: AT5G37770.1 (EF hand calcium-binding protein family)

HSP 1 Score: 62.4 bits (150), Expect = 1.5e-10
Identity = 30/57 (52.63%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 10 ECERIFNRFDCNGDGKISLSELENALHALG-SSSPEEVRRRMSEIDKDGNGFISLDE 66
          + +++F RFD NGDGKIS+ EL+  + AL  ++SPEE    M + D DGNGFI LDE
Sbjct: 17 DIKKVFQRFDKNGDGKISVDELKEVIRALSPTASPEETVTMMKQFDLDGNGFIDLDE 73

[Close]

BLAST of Carg22628 vs. TAIR10
Match: AT1G18210.1 (Calcium-binding EF-hand family protein)

HSP 1 Score: 57.4 bits (137), Expect = 5.0e-09
Identity = 28/65 (43.08%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 10 ECERIFNRFDCNGDGKISLSELENALHALGSSSPE-EVRRRMSEIDKDGNGFISLDELCE 69
          E +++F++FD NGDGKIS+ EL     A+G+S  E E+ R + E+D D +G+I+LDE   
Sbjct: 23 ELKKVFDQFDSNGDGKISVLELGGVFKAMGTSYTETELNRVLEEVDTDRDGYINLDEFST 82

Query: 70 FQRAN 74
            R++
Sbjct: 83 LCRSS 87

[Close]

BLAST of Carg22628 vs. TAIR10
Match: AT1G24620.1 (EF hand calcium-binding protein family)

HSP 1 Score: 57.0 bits (136), Expect = 6.5e-09
Identity = 28/67 (41.79%), Postives = 41/67 (61.19%), Query Frame = 0


Query: 10  ECERIFNRFDCNGDGKISLSELENALHALGSSSP-EEVRRRMSEIDKDGNGFISLDELCE 69
           E E +F +FD NGDGKIS  EL   + +LG   P EE+ + ++EID+ G+G+I+ +E  E
Sbjct: 37  ELEAVFKKFDVNGDGKISSKELGAIMTSLGHEVPEEELEKAITEIDRKGDGYINFEEFVE 96

Query: 70  FQRANPD 76
                 D
Sbjct: 97  LNTKGMD 103

[Close]

BLAST of Carg22628 vs. Swiss-Prot
Match: sp|O81092|ALL3_OLEEU (Polcalcin Ole e 3 OS=Olea europaea OX=4146 GN=OLE3 PE=1 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.5e-18
Identity = 48/82 (58.54%), Postives = 57/82 (69.51%), Query Frame = 0


Query: 1  MAESEAMRAECERIFNRFDCNGDGKISLSELENALHALGSSSPEEVRRRMSEIDKDGNGF 60
          MA+     AE ERIF RFD NGDGKIS SEL   L  LGS +PEE++R M+EID DG+GF
Sbjct: 1  MADDPQEVAEHERIFKRFDANGDGKISSSELGETLKTLGSVTPEEIQRMMAEIDTDGDGF 60

Query: 61 ISLDELCEFQRANPDLMKEVCK 83
          IS +E   F RAN  L+K+V K
Sbjct: 61 ISFEEFTVFARANRGLVKDVAK 82

[Close]

BLAST of Carg22628 vs. Swiss-Prot
Match: sp|P94092|POLC7_CYNDA (Polcalcin Cyn d 7 OS=Cynodon dactylon OX=28909 PE=1 SV=2)

HSP 1 Score: 92.4 bits (228), Expect = 2.5e-18
Identity = 45/73 (61.64%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 10 ECERIFNRFDCNGDGKISLSELENALHALGSSSPEEVRRRMSEIDKDGNGFISLDELCEF 69
          + E IF RFD NGDGKISL+EL +AL  LGS+S +EV+R M+EID DG+GFI  DE   F
Sbjct: 6  DMEHIFKRFDTNGDGKISLAELTDALRTLGSTSADEVQRMMAEIDTDGDGFIDFDEFISF 65

Query: 70 QRANPDLMKEVCK 83
            ANP LMK+V K
Sbjct: 66 CNANPGLMKDVAK 78

[Close]

BLAST of Carg22628 vs. Swiss-Prot
Match: sp|Q39419|POLC4_BETPN (Polcalcin Bet v 4 OS=Betula pendula OX=3505 GN=BETV4 PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 5.6e-18
Identity = 45/75 (60.00%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 8  RAECERIFNRFDCNGDGKISLSELENALHALGSSSPEEVRRRMSEIDKDGNGFISLDELC 67
          +AE ERIF RFD NGDGKIS +EL  AL  LGS +P+EV+  M+EID DG+GFIS  E  
Sbjct: 9  KAERERIFKRFDANGDGKISAAELGEALKTLGSITPDEVKHMMAEIDTDGDGFISFQEFT 68

Query: 68 EFQRANPDLMKEVCK 83
          +F RAN  L+K+V K
Sbjct: 69 DFGRANRGLLKDVAK 83

[Close]

BLAST of Carg22628 vs. Swiss-Prot
Match: sp|O81701|POLC4_ALNGL (Polcalcin Aln g 4 OS=Alnus glutinosa OX=3517 PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.6e-17
Identity = 45/75 (60.00%), Postives = 54/75 (72.00%), Query Frame = 0


Query: 8  RAECERIFNRFDCNGDGKISLSELENALHALGSSSPEEVRRRMSEIDKDGNGFISLDELC 67
          +AE ERIF  FD NGDGKIS SEL +AL  LGS +P+EV+  M+EID DG+GFIS  E  
Sbjct: 9  QAEHERIFKCFDANGDGKISASELGDALKTLGSVTPDEVKHMMAEIDTDGDGFISFQEFT 68

Query: 68 EFQRANPDLMKEVCK 83
           F RAN  L+K+V K
Sbjct: 69 NFARANRGLVKDVAK 83

[Close]

BLAST of Carg22628 vs. Swiss-Prot
Match: sp|Q8VWY6|POLC1_TOBAC (Polcalcin Nic t 1 OS=Nicotiana tabacum OX=4097 GN=Nict1 PE=1 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.4e-16
Identity = 46/82 (56.10%), Postives = 56/82 (68.29%), Query Frame = 0


Query: 1  MAESEAMRAECERIFNRFDCNGDGKISLSELENALHALGSSSPEEVRRRMSEIDKDGNGF 60
          MAE     A+ ERIF RFD NGDGKIS +EL   L  LGS + EEV+  M+E+D DG+GF
Sbjct: 1  MAEDPQDIADRERIFKRFDLNGDGKISSAELGETLKMLGSVTSEEVQHMMAELDTDGDGF 60

Query: 61 ISLDELCEFQRANPDLMKEVCK 83
          IS +E  EF RAN  L+K+V K
Sbjct: 61 ISYEEFEEFARANRGLIKDVAK 82

[Close]

BLAST of Carg22628 vs. TrEMBL
Match: tr|A0A0A0KAW9|A0A0A0KAW9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G041150 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.7e-32
Identity = 71/84 (84.52%), Postives = 77/84 (91.67%), Query Frame = 0


Query: 1  MAESEAMRAECERIFNRFDCNGDGKISLSELENALHALGSSSPEEVRRRMSEIDKDGNGF 60
          MA+S+  R ECERIF RFD NGDGKISLSELE ALHALGSS+PEEV RRMSEIDKDGNG+
Sbjct: 1  MADSDGNRMECERIFKRFDVNGDGKISLSELEAALHALGSSAPEEVGRRMSEIDKDGNGY 60

Query: 61 ISLDELCEFQRANPDLMKEVCKRL 85
          ISL+ELC+FQRANPDLMKEVCKRL
Sbjct: 61 ISLEELCDFQRANPDLMKEVCKRL 84

[Close]

BLAST of Carg22628 vs. TrEMBL
Match: tr|A0A1S3BDB5|A0A1S3BDB5_CUCME (polcalcin Syr v 3-like OS=Cucumis melo OX=3656 GN=LOC103488650 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.9e-31
Identity = 71/84 (84.52%), Postives = 77/84 (91.67%), Query Frame = 0


Query: 1  MAESEAMRAECERIFNRFDCNGDGKISLSELENALHALGSSSPEEVRRRMSEIDKDGNGF 60
          MA+S+  + ECERIF RFD NGDGKISLSELE ALHALGSS+PEEV RRMSEIDKDGNGF
Sbjct: 1  MADSDG-KMECERIFKRFDINGDGKISLSELETALHALGSSAPEEVGRRMSEIDKDGNGF 60

Query: 61 ISLDELCEFQRANPDLMKEVCKRL 85
          ISL+ELC+FQRANPDLMKEVCKRL
Sbjct: 61 ISLEELCDFQRANPDLMKEVCKRL 83

[Close]

BLAST of Carg22628 vs. TrEMBL
Match: tr|W9RDJ1|W9RDJ1_9ROSA (Polcalcin Syr v 3 OS=Morus notabilis OX=981085 GN=L484_006237 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 7.8e-25
Identity = 60/84 (71.43%), Postives = 70/84 (83.33%), Query Frame = 0


Query: 1  MAESEAMRAECERIFNRFDCNGDGKISLSELENALHALGSSSPEEVRRRMSEIDKDGNGF 60
          MAE    RA+CERIF RFD NGDGKIS +EL +AL++LGS SP+EV RRM+EIDKDG+GF
Sbjct: 1  MAELTEERAQCERIFKRFDANGDGKISWTELADALNSLGSGSPDEVHRRMAEIDKDGDGF 60

Query: 61 ISLDELCEFQRANPDLMKEVCKRL 85
          ISLDEL  FQ ANPDLMK+V K+L
Sbjct: 61 ISLDELYAFQLANPDLMKDVSKKL 84

[Close]

BLAST of Carg22628 vs. TrEMBL
Match: tr|M5X4D6|M5X4D6_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa019115mg PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.0e-24
Identity = 60/80 (75.00%), Postives = 68/80 (85.00%), Query Frame = 0


Query: 5  EAMRAECERIFNRFDCNGDGKISLSELENALHALGSSSPEEVRRRMSEIDKDGNGFISLD 64
          E+ +AECER+F RFD NGDGKISL+EL +AL ALGS SP+EVR+RM EID D +GFISLD
Sbjct: 4  ESAKAECERVFKRFDVNGDGKISLTELADALTALGSFSPDEVRKRMEEIDMDHDGFISLD 63

Query: 65 ELCEFQRANPDLMKEVCKRL 85
          EL  FQRANPDLMKEV KRL
Sbjct: 64 ELFAFQRANPDLMKEVVKRL 83

[Close]

BLAST of Carg22628 vs. TrEMBL
Match: tr|A0A2P6Q6Y0|A0A2P6Q6Y0_ROSCH (Putative EF-hand domain pair protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0019281 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 7.3e-23
Identity = 57/84 (67.86%), Postives = 67/84 (79.76%), Query Frame = 0


Query: 1  MAESEAMRAECERIFNRFDCNGDGKISLSELENALHALGSSSPEEVRRRMSEIDKDGNGF 60
          MA+    +A CERIF RFD NGD K+SL+E  +AL ALG+SSPEEVR+RM EID D +GF
Sbjct: 1  MADDADAKAGCERIFKRFDYNGDAKVSLTEFADALQALGTSSPEEVRQRMDEIDMDHDGF 60

Query: 61 ISLDELCEFQRANPDLMKEVCKRL 85
          ISL+EL  FQRANPDLMKEV K+L
Sbjct: 61 ISLEELFAFQRANPDLMKEVVKKL 84

The following BLAST results are available for this feature:

BLAST of Carg22628 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022929895.1	5.8e-40	100.00	polcalcin Phl p 7-like [Cucurbita moschata]	[more]
XP_023549323.1	3.8e-39	97.62	polcalcin Phl p 7-like [Cucurbita pepo subsp. pepo]	[more]
XP_022992461.1	3.2e-38	97.62	polcalcin Phl p 7-like [Cucurbita maxima]	[more]
KGN45979.1	2.6e-32	84.52	hypothetical protein Csa_6G041150 [Cucumis sativus]	[more]
XP_008445690.1	2.9e-31	84.52	PREDICTED: polcalcin Syr v 3-like [Cucumis melo]	[more]

BLAST of Carg22628 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G03430.1	3.8e-17	54.67	Calcium-binding EF-hand family protein	[more]
AT5G17480.1	3.8e-17	56.00	pollen calcium-binding protein 1	[more]
AT5G37770.1	1.5e-10	52.63	EF hand calcium-binding protein family	[more]
AT1G18210.1	5.0e-09	43.08	Calcium-binding EF-hand family protein	[more]
AT1G24620.1	6.5e-09	41.79	EF hand calcium-binding protein family	[more]

BLAST of Carg22628 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O81092\|ALL3_OLEEU	1.5e-18	58.54	Polcalcin Ole e 3 OS=Olea europaea OX=4146 GN=OLE3 PE=1 SV=1	[more]
sp\|P94092\|POLC7_CYNDA	2.5e-18	61.64	Polcalcin Cyn d 7 OS=Cynodon dactylon OX=28909 PE=1 SV=2	[more]
sp\|Q39419\|POLC4_BETPN	5.6e-18	60.00	Polcalcin Bet v 4 OS=Betula pendula OX=3505 GN=BETV4 PE=1 SV=1	[more]
sp\|O81701\|POLC4_ALNGL	3.6e-17	60.00	Polcalcin Aln g 4 OS=Alnus glutinosa OX=3517 PE=1 SV=1	[more]
sp\|Q8VWY6\|POLC1_TOBAC	1.4e-16	56.10	Polcalcin Nic t 1 OS=Nicotiana tabacum OX=4097 GN=Nict1 PE=1 SV=1	[more]

BLAST of Carg22628 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KAW9\|A0A0A0KAW9_CUCSA	1.7e-32	84.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G041150 PE=4 SV=1	[more]
tr\|A0A1S3BDB5\|A0A1S3BDB5_CUCME	1.9e-31	84.52	polcalcin Syr v 3-like OS=Cucumis melo OX=3656 GN=LOC103488650 PE=4 SV=1	[more]
tr\|W9RDJ1\|W9RDJ1_9ROSA	7.8e-25	71.43	Polcalcin Syr v 3 OS=Morus notabilis OX=981085 GN=L484_006237 PE=4 SV=1	[more]
tr\|M5X4D6\|M5X4D6_PRUPE	1.0e-24	75.00	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa019115mg PE=4 SV=1	[more]
tr\|A0A2P6Q6Y0\|A0A2P6Q6Y0_ROSCH	7.3e-23	67.86	Putative EF-hand domain pair protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011992	EF-hand-dom_pair
IPR018247	EF_Hand_1_Ca_BS
IPR002048	EF_hand_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005509	calcium ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22628-RA	Carg22628-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 10..38 e-value: 5.6E-5 score: 32.5 coord: 45..73 e-value: 0.004 score: 26.4
IPR002048	EF-hand domain	PFAM	PF13499	EF-hand_7	coord: 11..70 e-value: 1.5E-13 score: 50.9
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 44..76 score: 10.887
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 6..41 score: 14.29
IPR002048	EF-hand domain	CDD	cd00051	EFh	coord: 10..69 e-value: 4.0588E-14 score: 60.6393
None	No IPR available	GENE3D	G3DSA:1.10.238.10		coord: 2..84 e-value: 1.1E-22 score: 81.7
None	No IPR available	PANTHER	PTHR44833	FAMILY NOT NAMED	coord: 1..83
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 54..66
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 19..31
IPR011992	EF-hand domain pair	SUPERFAMILY	SSF47473	EF-hand	coord: 6..73

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22628	Csa6G041150	Cucumber (Chinese Long) v2	carcuB0248
Carg22628	CSPI06G03400	Wild cucumber (PI 183967)	carcpiB0253
Carg22628	Cucsa.365180	Cucumber (Gy14) v1	carcgyB0263
Carg22628	CmaCh17G005730	Cucurbita maxima (Rimu)	carcmaB0302
Carg22628	CmoCh17G005560	Cucurbita moschata (Rifu)	carcmoB0306
Carg22628	Lsi08G003190	Bottle gourd (USVL1VR-Ls)	carlsiB197
Carg22628	Cp4.1LG12g04870	Cucurbita pepo (Zucchini)	carcpeB0310
Carg22628	MELO3C030156.2	Melon (DHL92) v3.6.1	carmedB0233
Carg22628	CsaV3_6G003680	Cucumber (Chinese Long) v3	carcucB0252
Carg22628	Cla97C08G147140	Watermelon (97103) v2	carwmbB0223
Carg22628	Bhi04G001664	Wax gourd	carwgoB0274

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22628	Watermelon (Charleston Gray)	carwcgB0215
Carg22628	Watermelon (97103) v2	carwmbB0224
Carg22628	Silver-seed gourd	carcarB093
Carg22628	Cucumber (Gy14) v2	carcgybB0237
Carg22628	Cucumber (Gy14) v2	carcgybB0238
Carg22628	Cucumber (Gy14) v1	carcgyB0264
Carg22628	Cucurbita maxima (Rimu)	carcmaB0305
Carg22628	Cucurbita moschata (Rifu)	carcmoB0309
Carg22628	Cucurbita pepo (Zucchini)	carcpeB0312
Carg22628	Wild cucumber (PI 183967)	carcpiB0254
Carg22628	Cucumber (Chinese Long) v2	carcuB0249
Carg22628	Cucumber (Chinese Long) v3	carcucB0253
Carg22628	Melon (DHL92) v3.6.1	carmedB0232