Csa6G041150 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G041150
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionPolcalcin; contains IPR011992 (EF-hand-like domain)
LocationChr6 : 3027125 .. 3027609 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTTCTCATTCTCTCTTTTGCATCATTTTAGCCTCATCTAGCATCTCTAACCTCCGATTCTAAAGCTCTTTCTGTTATTACAATTCCACATTACAAAATCCAGTCCAAAGAAGCACAAAGAATATAAAACAATACCAAAAGAAAAGAAAAAATGGCAGACTCAGATGGAAACAGAATGGAATGCGAGCGAATCTTTAAGCGGTTCGATGTCAACGGAGACGGAAAGATCTCGCTATCGGAGCTTGAGGCTGCTCTGCACGCCCTTGGCTCCTCTGCGCCGGAAGAGGTTGGACGACGAATGTCGGAGATCGACAAGGACGGAAACGGTTACATTTCGCTTGAGGAACTCTGTGATTTTCAGAGGGCTAATCCTGATTTGATGAAGGAGGTTTGCAAGAGGCTTTAGGTTTGTTGAATTGGAATTCAGAATGTGATTGTAAAATTTTCTCCATTGTGCTCTAATTCTTTGTTTGTGATGTGTTTC

mRNA sequence

ATGGCAGACTCAGATGGAAACAGAATGGAATGCGAGCGAATCTTTAAGCGGTTCGATGTCAACGGAGACGGAAAGATCTCGCTATCGGAGCTTGAGGCTGCTCTGCACGCCCTTGGCTCCTCTGCGCCGGAAGAGGTTGGACGACGAATGTCGGAGATCGACAAGGACGGAAACGGTTACATTTCGCTTGAGGAACTCTGTGATTTTCAGAGGGCTAATCCTGATTTGATGAAGGAGGTTTGCAAGAGGCTTTAG

Coding sequence (CDS)

ATGGCAGACTCAGATGGAAACAGAATGGAATGCGAGCGAATCTTTAAGCGGTTCGATGTCAACGGAGACGGAAAGATCTCGCTATCGGAGCTTGAGGCTGCTCTGCACGCCCTTGGCTCCTCTGCGCCGGAAGAGGTTGGACGACGAATGTCGGAGATCGACAAGGACGGAAACGGTTACATTTCGCTTGAGGAACTCTGTGATTTTCAGAGGGCTAATCCTGATTTGATGAAGGAGGTTTGCAAGAGGCTTTAG

Protein sequence

MADSDGNRMECERIFKRFDVNGDGKISLSELEAALHALGSSAPEEVGRRMSEIDKDGNGYISLEELCDFQRANPDLMKEVCKRL*
Homology
[Close]
BLAST of Csa6G041150 vs. Swiss-Prot
Match: POLC3_SYRVU (Polcalcin Syr v 3 OS=Syringa vulgaris GN=SYRV3 PE=1 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.5e-18
Identity = 47/73 (64.38%), Postives = 52/73 (71.23%), Query Frame = 1 

Query: 10 ECERIFKRFDVNGDGKISLSELEAALHALGSSAPEEVGRRMSEIDKDGNGYISLEELCDF 69
          E ERIFKRFD NGDGKIS SEL   L  LGS  PEE+ R M+EID DG+G+IS EE  DF
Sbjct: 7  ELERIFKRFDANGDGKISSSELGETLKTLGSVTPEEIQRMMAEIDTDGDGFISFEEFKDF 66

Query: 70 QRANPDLMKEVCK 83
           RAN  L+K+V K
Sbjct: 67 ARANSGLIKDVAK 79

[Close]
BLAST of Csa6G041150 vs. Swiss-Prot
Match: ALL3_OLEEU (Polcalcin Ole e 3 OS=Olea europaea GN=OLE3 PE=1 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.5e-18
Identity = 49/82 (59.76%), Postives = 54/82 (65.85%), Query Frame = 1 

Query: 1  MADSDGNRMECERIFKRFDVNGDGKISLSELEAALHALGSSAPEEVGRRMSEIDKDGNGY 60
          MAD      E ERIFKRFD NGDGKIS SEL   L  LGS  PEE+ R M+EID DG+G+
Sbjct: 1  MADDPQEVAEHERIFKRFDANGDGKISSSELGETLKTLGSVTPEEIQRMMAEIDTDGDGF 60

Query: 61 ISLEELCDFQRANPDLMKEVCK 83
          IS EE   F RAN  L+K+V K
Sbjct: 61 ISFEEFTVFARANRGLVKDVAK 82

[Close]
BLAST of Csa6G041150 vs. Swiss-Prot
Match: POLC4_BETPN (Polcalcin Bet v 4 OS=Betula pendula GN=BETV4 PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 5.6e-18
Identity = 46/80 (57.50%), Postives = 55/80 (68.75%), Query Frame = 1 

Query: 3  DSDGNRMECERIFKRFDVNGDGKISLSELEAALHALGSSAPEEVGRRMSEIDKDGNGYIS 62
          D   ++ E ERIFKRFD NGDGKIS +EL  AL  LGS  P+EV   M+EID DG+G+IS
Sbjct: 4  DHPQDKAERERIFKRFDANGDGKISAAELGEALKTLGSITPDEVKHMMAEIDTDGDGFIS 63

Query: 63 LEELCDFQRANPDLMKEVCK 83
           +E  DF RAN  L+K+V K
Sbjct: 64 FQEFTDFGRANRGLLKDVAK 83

[Close]
BLAST of Csa6G041150 vs. Swiss-Prot
Match: POLC7_PHLPR (Polcalcin Phl p 7 OS=Phleum pratense PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 7.3e-18
Identity = 45/73 (61.64%), Postives = 51/73 (69.86%), Query Frame = 1 

Query: 10 ECERIFKRFDVNGDGKISLSELEAALHALGSSAPEEVGRRMSEIDKDGNGYISLEELCDF 69
          + ERIFKRFD NGDGKISLSEL  AL  LGS++ +EV R M+EID DG+G+I   E   F
Sbjct: 4  DMERIFKRFDTNGDGKISLSELTDALRTLGSTSADEVQRMMAEIDTDGDGFIDFNEFISF 63

Query: 70 QRANPDLMKEVCK 83
            ANP LMK+V K
Sbjct: 64 CNANPGLMKDVAK 76

[Close]
BLAST of Csa6G041150 vs. Swiss-Prot
Match: POLC3_CHEAL (Polcalcin Che a 3 OS=Chenopodium album PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 7.3e-18
Identity = 46/71 (64.79%), Postives = 52/71 (73.24%), Query Frame = 1 

Query: 12 ERIFKRFDVNGDGKISLSELEAALHALGSSAPEEVGRRMSEIDKDGNGYISLEELCDFQR 71
          ERIFKRFD NGDGKIS SEL  AL  LGS  P+EV R M+EID DG+G+IS +E  DF R
Sbjct: 14 ERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMAEIDTDGDGFISFDEFTDFAR 73

Query: 72 ANPDLMKEVCK 83
          AN  L+K+V K
Sbjct: 74 ANRGLVKDVSK 84

[Close]
BLAST of Csa6G041150 vs. TrEMBL
Match: A0A0A0KAW9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G041150 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 2.8e-40
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 

Query: 1  MADSDGNRMECERIFKRFDVNGDGKISLSELEAALHALGSSAPEEVGRRMSEIDKDGNGY 60
          MADSDGNRMECERIFKRFDVNGDGKISLSELEAALHALGSSAPEEVGRRMSEIDKDGNGY
Sbjct: 1  MADSDGNRMECERIFKRFDVNGDGKISLSELEAALHALGSSAPEEVGRRMSEIDKDGNGY 60

Query: 61 ISLEELCDFQRANPDLMKEVCKRL 85
          ISLEELCDFQRANPDLMKEVCKRL
Sbjct: 61 ISLEELCDFQRANPDLMKEVCKRL 84

[Close]
BLAST of Csa6G041150 vs. TrEMBL
Match: W9RDJ1_9ROSA (Polcalcin Syr v 3 OS=Morus notabilis GN=L484_006237 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 6.9e-23
Identity = 56/84 (66.67%), Postives = 69/84 (82.14%), Query Frame = 1 

Query: 1  MADSDGNRMECERIFKRFDVNGDGKISLSELEAALHALGSSAPEEVGRRMSEIDKDGNGY 60
          MA+    R +CERIFKRFD NGDGKIS +EL  AL++LGS +P+EV RRM+EIDKDG+G+
Sbjct: 1  MAELTEERAQCERIFKRFDANGDGKISWTELADALNSLGSGSPDEVHRRMAEIDKDGDGF 60

Query: 61 ISLEELCDFQRANPDLMKEVCKRL 85
          ISL+EL  FQ ANPDLMK+V K+L
Sbjct: 61 ISLDELYAFQLANPDLMKDVSKKL 84

[Close]
BLAST of Csa6G041150 vs. TrEMBL
Match: M5X4D6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019115mg PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 8.9e-23
Identity = 59/84 (70.24%), Postives = 68/84 (80.95%), Query Frame = 1 

Query: 1  MADSDGNRMECERIFKRFDVNGDGKISLSELEAALHALGSSAPEEVGRRMSEIDKDGNGY 60
          MAD    + ECER+FKRFDVNGDGKISL+EL  AL ALGS +P+EV +RM EID D +G+
Sbjct: 1  MADESA-KAECERVFKRFDVNGDGKISLTELADALTALGSFSPDEVRKRMEEIDMDHDGF 60

Query: 61 ISLEELCDFQRANPDLMKEVCKRL 85
          ISL+EL  FQRANPDLMKEV KRL
Sbjct: 61 ISLDELFAFQRANPDLMKEVVKRL 83

[Close]
BLAST of Csa6G041150 vs. TrEMBL
Match: I1KRQ2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G093000 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-20
Identity = 52/77 (67.53%), Postives = 61/77 (79.22%), Query Frame = 1 

Query: 8  RMECERIFKRFDVNGDGKISLSELEAALHALGSSAPEEVGRRMSEIDKDGNGYISLEELC 67
          R ECER+FKRFDVNGDG ISLSE   AL  LG ++ EEV RRM EIDKDG+GYI+LEEL 
Sbjct: 4  REECERVFKRFDVNGDGNISLSEFADALKVLGLTSQEEVERRMKEIDKDGDGYITLEELI 63

Query: 68 DFQRANPDLMKEVCKRL 85
          +F  ANP LM++V K+L
Sbjct: 64 EFHTANPSLMRDVLKKL 80

[Close]
BLAST of Csa6G041150 vs. TrEMBL
Match: A0A0B2R128_GLYSO (Polcalcin Phl p 7 OS=Glycine soja GN=glysoja_018828 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 5.4e-20
Identity = 51/77 (66.23%), Postives = 61/77 (79.22%), Query Frame = 1 

Query: 8  RMECERIFKRFDVNGDGKISLSELEAALHALGSSAPEEVGRRMSEIDKDGNGYISLEELC 67
          R ECER+FKRFDVNGDG ISLSE   AL  LG ++ EEV RRM+EIDKDG+G+I+L EL 
Sbjct: 5  REECERVFKRFDVNGDGNISLSEFADALKVLGLTSQEEVERRMAEIDKDGDGHITLNELI 64

Query: 68 DFQRANPDLMKEVCKRL 85
          +F  ANP LMK+V K+L
Sbjct: 65 EFHTANPSLMKDVLKKL 81

[Close]
BLAST of Csa6G041150 vs. TAIR10
Match: AT3G03430.1 (AT3G03430.1 Calcium-binding EF-hand family protein)

HSP 1 Score: 86.3 bits (212), Expect = 1.0e-17
Identity = 46/82 (56.10%), Postives = 55/82 (67.07%), Query Frame = 1 

Query: 1  MADSDGNRMECERIFKRFDVNGDGKISLSELEAALHALGSSAPEEVGRRMSEIDKDGNGY 60
          MAD+   + E +RIFK+FD NGDGKIS +EL  AL  LGS   E++ R M+EID DG+GY
Sbjct: 1  MADAT-EKAEHDRIFKKFDANGDGKISAAELGDALKNLGSVTHEDIKRMMAEIDTDGDGY 60

Query: 61 ISLEELCDFQRANPDLMKEVCK 83
          IS +E  DF  AN  LMK+V K
Sbjct: 61 ISYQEFIDFASANRGLMKDVAK 81

[Close]
BLAST of Csa6G041150 vs. TAIR10
Match: AT5G17480.1 (AT5G17480.1 pollen calcium-binding protein 1)

HSP 1 Score: 85.9 bits (211), Expect = 1.3e-17
Identity = 46/82 (56.10%), Postives = 55/82 (67.07%), Query Frame = 1 

Query: 1  MADSDGNRMECERIFKRFDVNGDGKISLSELEAALHALGSSAPEEVGRRMSEIDKDGNGY 60
          MAD+   + E +RIFK+FD NGDGKIS +ELE AL  LGS   ++V R M+EID DG+G 
Sbjct: 1  MADAT-EKAEHDRIFKKFDANGDGKISAAELEEALKTLGSVTADDVKRMMAEIDTDGDGN 60

Query: 61 ISLEELCDFQRANPDLMKEVCK 83
          IS +E  DF  AN  LMK+V K
Sbjct: 61 ISYQEFTDFAGANRGLMKDVAK 81

[Close]
BLAST of Csa6G041150 vs. TAIR10
Match: AT1G24620.1 (AT1G24620.1 EF hand calcium-binding protein family)

HSP 1 Score: 64.7 bits (156), Expect = 3.2e-11
Identity = 32/67 (47.76%), Postives = 42/67 (62.69%), Query Frame = 1 

Query: 10  ECERIFKRFDVNGDGKISLSELEAALHALGSSAP-EEVGRRMSEIDKDGNGYISLEELCD 69
           E E +FK+FDVNGDGKIS  EL A + +LG   P EE+ + ++EID+ G+GYI+ EE  +
Sbjct: 37  ELEAVFKKFDVNGDGKISSKELGAIMTSLGHEVPEEELEKAITEIDRKGDGYINFEEFVE 96

Query: 70  FQRANPD 76
                 D
Sbjct: 97  LNTKGMD 103

[Close]
BLAST of Csa6G041150 vs. TAIR10
Match: AT5G37770.1 (AT5G37770.1 EF hand calcium-binding protein family)

HSP 1 Score: 60.8 bits (146), Expect = 4.6e-10
Identity = 29/61 (47.54%), Postives = 40/61 (65.57%), Query Frame = 1 

Query: 6  GNRMECERIFKRFDVNGDGKISLSELEAALHALGSSA-PEEVGRRMSEIDKDGNGYISLE 65
          G+  + +++F+RFD NGDGKIS+ EL+  + AL  +A PEE    M + D DGNG+I L+
Sbjct: 13 GSMDDIKKVFQRFDKNGDGKISVDELKEVIRALSPTASPEETVTMMKQFDLDGNGFIDLD 72

[Close]
BLAST of Csa6G041150 vs. TAIR10
Match: AT1G73630.1 (AT1G73630.1 EF hand calcium-binding protein family)

HSP 1 Score: 57.4 bits (137), Expect = 5.0e-09
Identity = 29/66 (43.94%), Postives = 42/66 (63.64%), Query Frame = 1 

Query: 9  MECERIFKRFDVNGDGKISLSELEAALHALGSS-APEEVGRRMSEIDKDGNGYISLEELC 68
          ME +++F +FD NGDGKIS+SEL     ++G+S   EE+ R + EID D +G+I+ EE  
Sbjct: 19 MELKKVFDKFDANGDGKISVSELGNVFKSMGTSYTEEELNRVLDEIDIDCDGFINQEEFA 78

Query: 69 DFQRAN 74
             R++
Sbjct: 79 TICRSS 84

[Close]
BLAST of Csa6G041150 vs. NCBI nr
Match: gi|700190775|gb|KGN45979.1| (hypothetical protein Csa_6G041150 [Cucumis sativus])

HSP 1 Score: 172.2 bits (435), Expect = 4.0e-40
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 

Query: 1  MADSDGNRMECERIFKRFDVNGDGKISLSELEAALHALGSSAPEEVGRRMSEIDKDGNGY 60
          MADSDGNRMECERIFKRFDVNGDGKISLSELEAALHALGSSAPEEVGRRMSEIDKDGNGY
Sbjct: 1  MADSDGNRMECERIFKRFDVNGDGKISLSELEAALHALGSSAPEEVGRRMSEIDKDGNGY 60

Query: 61 ISLEELCDFQRANPDLMKEVCKRL 85
          ISLEELCDFQRANPDLMKEVCKRL
Sbjct: 61 ISLEELCDFQRANPDLMKEVCKRL 84

[Close]
BLAST of Csa6G041150 vs. NCBI nr
Match: gi|659089805|ref|XP_008445690.1| (PREDICTED: polcalcin Syr v 3-like [Cucumis melo])

HSP 1 Score: 160.6 bits (405), Expect = 1.2e-36
Identity = 79/84 (94.05%), Postives = 82/84 (97.62%), Query Frame = 1 

Query: 1  MADSDGNRMECERIFKRFDVNGDGKISLSELEAALHALGSSAPEEVGRRMSEIDKDGNGY 60
          MADSDG +MECERIFKRFD+NGDGKISLSELE ALHALGSSAPEEVGRRMSEIDKDGNG+
Sbjct: 1  MADSDG-KMECERIFKRFDINGDGKISLSELETALHALGSSAPEEVGRRMSEIDKDGNGF 60

Query: 61 ISLEELCDFQRANPDLMKEVCKRL 85
          ISLEELCDFQRANPDLMKEVCKRL
Sbjct: 61 ISLEELCDFQRANPDLMKEVCKRL 83

[Close]
BLAST of Csa6G041150 vs. NCBI nr
Match: gi|703085078|ref|XP_010092641.1| (Polcalcin Syr v 3 [Morus notabilis])

HSP 1 Score: 114.4 bits (285), Expect = 9.8e-23
Identity = 56/84 (66.67%), Postives = 69/84 (82.14%), Query Frame = 1 

Query: 1  MADSDGNRMECERIFKRFDVNGDGKISLSELEAALHALGSSAPEEVGRRMSEIDKDGNGY 60
          MA+    R +CERIFKRFD NGDGKIS +EL  AL++LGS +P+EV RRM+EIDKDG+G+
Sbjct: 1  MAELTEERAQCERIFKRFDANGDGKISWTELADALNSLGSGSPDEVHRRMAEIDKDGDGF 60

Query: 61 ISLEELCDFQRANPDLMKEVCKRL 85
          ISL+EL  FQ ANPDLMK+V K+L
Sbjct: 61 ISLDELYAFQLANPDLMKDVSKKL 84

[Close]
BLAST of Csa6G041150 vs. NCBI nr
Match: gi|595883136|ref|XP_007212731.1| (hypothetical protein PRUPE_ppa019115mg [Prunus persica])

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-22
Identity = 59/84 (70.24%), Postives = 68/84 (80.95%), Query Frame = 1 

Query: 1  MADSDGNRMECERIFKRFDVNGDGKISLSELEAALHALGSSAPEEVGRRMSEIDKDGNGY 60
          MAD    + ECER+FKRFDVNGDGKISL+EL  AL ALGS +P+EV +RM EID D +G+
Sbjct: 1  MADESA-KAECERVFKRFDVNGDGKISLTELADALTALGSFSPDEVRKRMEEIDMDHDGF 60

Query: 61 ISLEELCDFQRANPDLMKEVCKRL 85
          ISL+EL  FQRANPDLMKEV KRL
Sbjct: 61 ISLDELFAFQRANPDLMKEVVKRL 83

[Close]
BLAST of Csa6G041150 vs. NCBI nr
Match: gi|947093915|gb|KRH42500.1| (hypothetical protein GLYMA_08G093000 [Glycine max])

HSP 1 Score: 107.1 bits (266), Expect = 1.6e-20
Identity = 52/77 (67.53%), Postives = 61/77 (79.22%), Query Frame = 1 

Query: 8  RMECERIFKRFDVNGDGKISLSELEAALHALGSSAPEEVGRRMSEIDKDGNGYISLEELC 67
          R ECER+FKRFDVNGDG ISLSE   AL  LG ++ EEV RRM EIDKDG+GYI+LEEL 
Sbjct: 4  REECERVFKRFDVNGDGNISLSEFADALKVLGLTSQEEVERRMKEIDKDGDGYITLEELI 63

Query: 68 DFQRANPDLMKEVCKRL 85
          +F  ANP LM++V K+L
Sbjct: 64 EFHTANPSLMRDVLKKL 80

The following BLAST results are available for this feature:
BLAST of Csa6G041150 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POLC3_SYRVU1.5e-1864.38Polcalcin Syr v 3 OS=Syringa vulgaris GN=SYRV3 PE=1 SV=1[more]
ALL3_OLEEU2.5e-1859.76Polcalcin Ole e 3 OS=Olea europaea GN=OLE3 PE=1 SV=1[more]
POLC4_BETPN5.6e-1857.50Polcalcin Bet v 4 OS=Betula pendula GN=BETV4 PE=1 SV=1[more]
POLC7_PHLPR7.3e-1861.64Polcalcin Phl p 7 OS=Phleum pratense PE=1 SV=1[more]
POLC3_CHEAL7.3e-1864.79Polcalcin Che a 3 OS=Chenopodium album PE=1 SV=1[more]
BLAST of Csa6G041150 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAW9_CUCSA2.8e-40100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G041150 PE=4 SV=1[more]
W9RDJ1_9ROSA6.9e-2366.67Polcalcin Syr v 3 OS=Morus notabilis GN=L484_006237 PE=4 SV=1[more]
M5X4D6_PRUPE8.9e-2370.24Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019115mg PE=4 SV=1[more]
I1KRQ2_SOYBN1.1e-2067.53Uncharacterized protein OS=Glycine max GN=GLYMA_08G093000 PE=4 SV=1[more]
A0A0B2R128_GLYSO5.4e-2066.23Polcalcin Phl p 7 OS=Glycine soja GN=glysoja_018828 PE=4 SV=1[more]
BLAST of Csa6G041150 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G03430.11.0e-1756.10 Calcium-binding EF-hand family protein[more]
AT5G17480.11.3e-1756.10 pollen calcium-binding protein 1[more]
AT1G24620.13.2e-1147.76 EF hand calcium-binding protein family[more]
AT5G37770.14.6e-1047.54 EF hand calcium-binding protein family[more]
AT1G73630.15.0e-0943.94 EF hand calcium-binding protein family[more]
BLAST of Csa6G041150 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190775|gb|KGN45979.1|4.0e-40100.00hypothetical protein Csa_6G041150 [Cucumis sativus][more]
gi|659089805|ref|XP_008445690.1|1.2e-3694.05PREDICTED: polcalcin Syr v 3-like [Cucumis melo][more]
gi|703085078|ref|XP_010092641.1|9.8e-2366.67Polcalcin Syr v 3 [Morus notabilis][more]
gi|595883136|ref|XP_007212731.1|1.3e-2270.24hypothetical protein PRUPE_ppa019115mg [Prunus persica][more]
gi|947093915|gb|KRH42500.1|1.6e-2067.53hypothetical protein GLYMA_08G093000 [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU091852cucumber EST collection version 3.0transcribed_cluster
CU152557cucumber EST collection version 3.0transcribed_cluster
CU173703cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G041150.1Csa6G041150.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU152557CU152557transcribed_cluster
CU091852CU091852transcribed_cluster
CU173703CU173703transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF13499EF-hand_7coord: 11..70
score: 2.6
IPR002048EF-hand domainSMARTSM00054efh_1coord: 45..73
score: 0.018coord: 10..38
score: 8.
IPR002048EF-hand domainPROFILEPS50222EF_HAND_2coord: 44..76
score: 10.19coord: 6..41
score: 15
IPR011992EF-hand domain pairGENE3DG3DSA:1.10.238.10coord: 5..78
score: 2.9
IPR011992EF-hand domain pairunknownSSF47473EF-handcoord: 10..74
score: 2.05
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 54..66
score: -coord: 19..31
scor
NoneNo IPR availablePANTHERPTHR10891EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEINcoord: 10..84
score: 2.3
NoneNo IPR availablePANTHERPTHR10891:SF605CALCIUM-BINDING PROTEIN CML25-RELATEDcoord: 10..84
score: 2.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G041150CSPI06G03400Wild cucumber (PI 183967)cpicuB314
Csa6G041150Cucsa.365180Cucumber (Gy14) v1cgycuB511
Csa6G041150CmaCh17G005730Cucurbita maxima (Rimu)cmacuB373
Csa6G041150CmoCh17G005560Cucurbita moschata (Rifu)cmocuB364
Csa6G041150Cp4.1LG12g04870Cucurbita pepo (Zucchini)cpecuB146
Csa6G041150CsGy6G003390Cucumber (Gy14) v2cgybcuB282
Csa6G041150Carg22628Silver-seed gourdcarcuB0248
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G041150Watermelon (97103) v2cuwmbB493
Csa6G041150Wax gourdcuwgoB590
Csa6G041150Cucurbita maxima (Rimu)cmacuB910
Csa6G041150Melon (DHL92) v3.5.1cumeB476
Csa6G041150Watermelon (Charleston Gray)cuwcgB502
Csa6G041150Watermelon (97103) v1cuwmB459
Csa6G041150Watermelon (97103) v1cuwmB474
Csa6G041150Bottle gourd (USVL1VR-Ls)culsiB473
Csa6G041150Melon (DHL92) v3.6.1cumedB455
Csa6G041150Silver-seed gourdcarcuB0092