Carg22423 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22423
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	UPF0454 protein C12orf49 like
Location	Cucurbita_argyrosperma_scaffold_152 : 18803 .. 19775 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCCTAAATCACTGTGACATGTGAGTAAGCTTCTGTTTTCTTTTCCATTTCTTATGAAGCCATTAGAATTTTTCTTGATTTAAGTGTTTTTGAATAAAAAAAAAAAAAGTGGATGTAGTTACTGTGAGATCCCACATCGGTTGGGGAGGTGAACGAAGCATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCGGACGCATTTTAAAAACCTTGAGGAGAAGTCTGAAAGGAAAAACCCAAAGAGAATAATATCCGTTAACGGGTGGGCTTGGACCGTTACAATTACTCTGTGCACGGTAGATGACTTATGAATTATGAATTGTATACTTTCTTATATTTATATTCATGTTGTTTTCTTTATTTTGGGATAGTATGCAAAAATACTTGAGCTGCAAAGGAGGTTGCTTACCAAGTGTTGGGCCTGATCAACCTGCTGAAGTTGCTTATAATTCTCCTAAAGAACTGGTATGTTGTCCTCTTCTTTTTGTATTGATAATCAGACGTGATTCTCAGTATTATTTGTTGGCATAATGGAATTGGATGATTATGGTTCGAATAATCAATAAGAACGAAAGGCGTGGAAAGAACGAAAATGTCATACTGTTACACTGATATTTTGGGATTTATACACCGAATTACTTGATGTTCAAATAGATTGAAAGGGTTTATGGTACCCAACCAAACTTAGTTCATCATCATGTTCACCCAGTTCAAATAGATTGTGTTCTTCCTTTATTGATATTAAAACCGAACTTTCCCCAGATATGTAAGTTTTACTGAGTTTCTTTTGAATGTATTATAAAGGAAATGATGCATGAAAGCAGCTGTGTTTTTTTATGCTATAGAGTTCTTATATTTAGTGTATACAAATACCAGAATCCAGGAGCATGCTTATACAGCAGCGCACAGCCAATGCTTTCTTGCGATGGCTCACACCCGCAAACCAGAAGGCTTTGTCCTTGCGCCTAG

mRNA sequence

ATGGTCCTAAATCACTGTGACATTATGCAAAAATACTTGAGCTGCAAAGGAGGTTGCTTACCAAGTGTTGGGCCTGATCAACCTGCTGAAGTTGCTTATAATTCTCCTAAAGAACTGAATCCAGGAGCATGCTTATACAGCAGCGCACAGCCAATGCTTTCTTGCGATGGCTCACACCCGCAAACCAGAAGGCTTTGTCCTTGCGCCTAG

Coding sequence (CDS)

ATGGTCCTAAATCACTGTGACATTATGCAAAAATACTTGAGCTGCAAAGGAGGTTGCTTACCAAGTGTTGGGCCTGATCAACCTGCTGAAGTTGCTTATAATTCTCCTAAAGAACTGAATCCAGGAGCATGCTTATACAGCAGCGCACAGCCAATGCTTTCTTGCGATGGCTCACACCCGCAAACCAGAAGGCTTTGTCCTTGCGCCTAG

Protein sequence

MVLNHCDIMQKYLSCKGGCLPSVGPDQPAEVAYNSPKELNPGACLYSSAQPMLSCDGSHPQTRRLCPCA

Homology

[Close]

BLAST of Carg22423 vs. NCBI nr
Match: XP_023527421.1 (uncharacterized protein LOC111790656 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 152.9 bits (385), Expect = 3.9e-34
Identity = 68/69 (98.55%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1   MVLNHCDIMQKYLSCKGGCLPSVGPDQPAEVAYNSPKELNPGACLYSSAQPMLSCDGSHP 60
           MVLNHCDIMQKYLSCKGGCLPSVGPDQPAEVAYNSPKELNPGACLYSSAQPMLSCDGSHP
Sbjct: 203 MVLNHCDIMQKYLSCKGGCLPSVGPDQPAEVAYNSPKELNPGACLYSSAQPMLSCDGSHP 262

Query: 61  QTRRLCPCA 70
            TRRLCPCA
Sbjct: 263 HTRRLCPCA 271

[Close]

BLAST of Carg22423 vs. NCBI nr
Match: XP_022955357.1 (uncharacterized protein LOC111457409 isoform X1 [Cucurbita moschata])

HSP 1 Score: 151.0 bits (380), Expect = 1.5e-33
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1   MVLNHCDIMQKYLSCKGGCLPSVGPDQPAEVAYNSPKELNPGACLYSSAQPMLSCDGSHP 60
           MVLNHC+IMQKYLSCKGGCLPSVGPDQPAEVAYNSPKELNPGACLYSSAQPMLSCDGSHP
Sbjct: 203 MVLNHCNIMQKYLSCKGGCLPSVGPDQPAEVAYNSPKELNPGACLYSSAQPMLSCDGSHP 262

Query: 61  QTRRLCPCA 70
            TRRLCPCA
Sbjct: 263 HTRRLCPCA 271

[Close]

BLAST of Carg22423 vs. NCBI nr
Match: XP_022979904.1 (uncharacterized protein LOC111479456 [Cucurbita maxima])

HSP 1 Score: 149.8 bits (377), Expect = 3.3e-33
Identity = 67/69 (97.10%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1   MVLNHCDIMQKYLSCKGGCLPSVGPDQPAEVAYNSPKELNPGACLYSSAQPMLSCDGSHP 60
           MVLNHCDIMQKYLSCKGGCL SVGPDQPAEVAYNSPKELNPGACLYSSAQPMLSCDGSHP
Sbjct: 203 MVLNHCDIMQKYLSCKGGCLSSVGPDQPAEVAYNSPKELNPGACLYSSAQPMLSCDGSHP 262

Query: 61  QTRRLCPCA 70
            TRRLCPCA
Sbjct: 263 HTRRLCPCA 271

[Close]

BLAST of Carg22423 vs. NCBI nr
Match: XP_008453981.1 (PREDICTED: uncharacterized protein LOC103494541 isoform X1 [Cucumis melo])

HSP 1 Score: 137.1 bits (344), Expect = 2.2e-29
Identity = 60/69 (86.96%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1   MVLNHCDIMQKYLSCKGGCLPSVGPDQPAEVAYNSPKELNPGACLYSSAQPMLSCDGSHP 60
           +VLNHCDIMQKYLSCKGGCL SVG DQPAEVAY++PKELNPGACLYSSAQ M+SCDGSHP
Sbjct: 203 LVLNHCDIMQKYLSCKGGCLASVGTDQPAEVAYDAPKELNPGACLYSSAQSMVSCDGSHP 262

Query: 61  QTRRLCPCA 70
            T+RLCPCA
Sbjct: 263 HTKRLCPCA 271

[Close]

BLAST of Carg22423 vs. NCBI nr
Match: XP_011653057.1 (PREDICTED: uncharacterized protein LOC101217783 [Cucumis sativus] >KGN53089.1 hypothetical protein Csa_4G015790 [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 2.2e-29
Identity = 60/69 (86.96%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1   MVLNHCDIMQKYLSCKGGCLPSVGPDQPAEVAYNSPKELNPGACLYSSAQPMLSCDGSHP 60
           +VLNHCDIMQKYLSCKGGCL SVG DQPAEVAY++PKELNPGACLYSSAQ M+SCDGSHP
Sbjct: 203 LVLNHCDIMQKYLSCKGGCLASVGTDQPAEVAYDAPKELNPGACLYSSAQSMVSCDGSHP 262

Query: 61  QTRRLCPCA 70
            T+RLCPCA
Sbjct: 263 HTKRLCPCA 271

[Close]

BLAST of Carg22423 vs. TAIR10
Match: AT3G59390.2 (unknown protein)

HSP 1 Score: 106.3 bits (264), Expect = 7.7e-24
Identity = 43/68 (63.24%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 2   VLNHCDIMQKYLSCKGGCLPSVGPDQPAEVAYNSPKELNPGACLYSSAQPMLSCDGSHPQ 61
           +LN CD+M++Y++CKG CL S G DQPAEV  ++P++L PGACLY+  Q +LSCDGSH  
Sbjct: 206 LLNQCDVMKRYMNCKGSCLASAGADQPAEVVEDAPRDLYPGACLYTRTQSLLSCDGSHQH 265

Query: 62  TRRLCPCA 70
           TRRLCPCA
Sbjct: 266 TRRLCPCA 273

[Close]

BLAST of Carg22423 vs. TrEMBL
Match: tr|A0A1S3BX18|A0A1S3BX18_CUCME (uncharacterized protein LOC103494541 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494541 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.5e-29
Identity = 60/69 (86.96%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1   MVLNHCDIMQKYLSCKGGCLPSVGPDQPAEVAYNSPKELNPGACLYSSAQPMLSCDGSHP 60
           +VLNHCDIMQKYLSCKGGCL SVG DQPAEVAY++PKELNPGACLYSSAQ M+SCDGSHP
Sbjct: 203 LVLNHCDIMQKYLSCKGGCLASVGTDQPAEVAYDAPKELNPGACLYSSAQSMVSCDGSHP 262

Query: 61  QTRRLCPCA 70
            T+RLCPCA
Sbjct: 263 HTKRLCPCA 271

[Close]

BLAST of Carg22423 vs. TrEMBL
Match: tr|A0A1S4DZY1|A0A1S4DZY1_CUCME (uncharacterized protein LOC103494541 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494541 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.5e-29
Identity = 60/69 (86.96%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1   MVLNHCDIMQKYLSCKGGCLPSVGPDQPAEVAYNSPKELNPGACLYSSAQPMLSCDGSHP 60
           +VLNHCDIMQKYLSCKGGCL SVG DQPAEVAY++PKELNPGACLYSSAQ M+SCDGSHP
Sbjct: 201 LVLNHCDIMQKYLSCKGGCLASVGTDQPAEVAYDAPKELNPGACLYSSAQSMVSCDGSHP 260

Query: 61  QTRRLCPCA 70
            T+RLCPCA
Sbjct: 261 HTKRLCPCA 269

[Close]

BLAST of Carg22423 vs. TrEMBL
Match: tr|A0A0A0KW54|A0A0A0KW54_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G015790 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.5e-29
Identity = 60/69 (86.96%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1   MVLNHCDIMQKYLSCKGGCLPSVGPDQPAEVAYNSPKELNPGACLYSSAQPMLSCDGSHP 60
           +VLNHCDIMQKYLSCKGGCL SVG DQPAEVAY++PKELNPGACLYSSAQ M+SCDGSHP
Sbjct: 203 LVLNHCDIMQKYLSCKGGCLASVGTDQPAEVAYDAPKELNPGACLYSSAQSMVSCDGSHP 262

Query: 61  QTRRLCPCA 70
            T+RLCPCA
Sbjct: 263 HTKRLCPCA 271

[Close]

BLAST of Carg22423 vs. TrEMBL
Match: tr|A0A1S3EBK5|A0A1S3EBK5_CICAR (uncharacterized protein LOC101496573 OS=Cicer arietinum OX=3827 GN=LOC101496573 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.9e-24
Identity = 51/69 (73.91%), Postives = 59/69 (85.51%), Query Frame = 0


Query: 1   MVLNHCDIMQKYLSCKGGCLPSVGPDQPAEVAYNSPKELNPGACLYSSAQPMLSCDGSHP 60
           +VLNHCDI+QKY+SCKG CL SVG DQPAEV Y++PK LNPG+CLY+  Q +LSCDGSH 
Sbjct: 214 VVLNHCDIIQKYMSCKGACLASVGTDQPAEVVYDAPKYLNPGSCLYTETQSILSCDGSHQ 273

Query: 61  QTRRLCPCA 70
            TRRLCPCA
Sbjct: 274 HTRRLCPCA 282

[Close]

BLAST of Carg22423 vs. TrEMBL
Match: tr|A0A0D2UT25|A0A0D2UT25_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G143000 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 4.2e-24
Identity = 51/69 (73.91%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 1   MVLNHCDIMQKYLSCKGGCLPSVGPDQPAEVAYNSPKELNPGACLYSSAQPMLSCDGSHP 60
           ++LN CDI+QKY+SCKG CL SVGPDQPAEV  ++PK LNPGACLY+  Q MLSCDGSH 
Sbjct: 206 LILNQCDIIQKYMSCKGACLASVGPDQPAEVVDDAPKNLNPGACLYTRTQSMLSCDGSHR 265

Query: 61  QTRRLCPCA 70
            TRRLCPCA
Sbjct: 266 HTRRLCPCA 274

The following BLAST results are available for this feature:

BLAST of Carg22423 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023527421.1	3.9e-34	98.55	uncharacterized protein LOC111790656 [Cucurbita pepo subsp. pepo]	[more]
XP_022955357.1	1.5e-33	97.10	uncharacterized protein LOC111457409 isoform X1 [Cucurbita moschata]	[more]
XP_022979904.1	3.3e-33	97.10	uncharacterized protein LOC111479456 [Cucurbita maxima]	[more]
XP_008453981.1	2.2e-29	86.96	PREDICTED: uncharacterized protein LOC103494541 isoform X1 [Cucumis melo]	[more]
XP_011653057.1	2.2e-29	86.96	PREDICTED: uncharacterized protein LOC101217783 [Cucumis sativus] >KGN53089.1 hy...	[more]

BLAST of Carg22423 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G59390.2	7.7e-24	63.24	unknown protein	[more]

BLAST of Carg22423 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg22423 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BX18\|A0A1S3BX18_CUCME	1.5e-29	86.96	uncharacterized protein LOC103494541 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S4DZY1\|A0A1S4DZY1_CUCME	1.5e-29	86.96	uncharacterized protein LOC103494541 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0KW54\|A0A0A0KW54_CUCSA	1.5e-29	86.96	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G015790 PE=4 SV=1	[more]
tr\|A0A1S3EBK5\|A0A1S3EBK5_CICAR	1.9e-24	73.91	uncharacterized protein LOC101496573 OS=Cicer arietinum OX=3827 GN=LOC101496573 ...	[more]
tr\|A0A0D2UT25\|A0A0D2UT25_GOSRA	4.2e-24	73.91	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G143000 PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22423-RA	Carg22423-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22423	Cla010845	Watermelon (97103) v1	carwmB0182
Carg22423	Csa4G015790	Cucumber (Chinese Long) v2	carcuB0215
Carg22423	MELO3C017715	Melon (DHL92) v3.5.1	carmeB0194
Carg22423	ClCG07G015660	Watermelon (Charleston Gray)	carwcgB0187
Carg22423	CSPI04G03450	Wild cucumber (PI 183967)	carcpiB0223
Carg22423	Cucsa.094710	Cucumber (Gy14) v1	carcgyB0231
Carg22423	CmaCh14G014740	Cucurbita maxima (Rimu)	carcmaB0265
Carg22423	CmaCh06G016490	Cucurbita maxima (Rimu)	carcmaB0267
Carg22423	CmoCh06G016510	Cucurbita moschata (Rifu)	carcmoB0274
Carg22423	Lsi07G000470	Bottle gourd (USVL1VR-Ls)	carlsiB172
Carg22423	Cp4.1LG08g05970	Cucurbita pepo (Zucchini)	carcpeB0279
Carg22423	Cp4.1LG03g12800	Cucurbita pepo (Zucchini)	carcpeB0278
Carg22423	MELO3C017715.2	Melon (DHL92) v3.6.1	carmedB0198
Carg22423	CsaV3_4G003450	Cucumber (Chinese Long) v3	carcucB0221
Carg22423	Cla97C07G142680	Watermelon (97103) v2	carwmbB0198
Carg22423	Bhi01G002104	Wax gourd	carwgoB0240

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg22423	Carg15476	Silver-seed gourd	carcarB231

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22423	Cucumber (Gy14) v2	carcgybB0208
Carg22423	Cucurbita moschata (Rifu)	carcmoB0272