Carg22134 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22134
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	DNA-directed primase/polymerase protein isoform X2
Location	Cucurbita_argyrosperma_scaffold_229 : 236513 .. 239422 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACTGCGAATCTCGTTTTTAGACACAATGAATTTCACTGTGAAGCAATTGTAATTATTGTAGAAAAACTACTAGATTTTGTGAACTGGAATCACGATAGAGGAGCAATGTTATAGGTCGAATTTTCTGCTGTGATTTGGTGATCAGCATGGATGTTCTTTGTTTCTGTATTTTCTGCTTCTGATTATGTGCGGTTATCCATCCTGTTTCTGTTCAGAATCTTCTGTGAGAGGAAAAAAGAAAGAAAAAGTAAATTGAAGCCTGAGAGTTCAGCAAACTTTGAGACTCCAGTTTCTGTTTCAGGTAAGGAAATACAGGACAATGCAACGAACGGCCAAGATTTCATGGAAAAAGTAAGTCATTGTTTTCTGGATGGCGGAGTTCGCCTGAATTCCATGAACTTATTCTTCATATGGTTATTCTAGTATTTCATCCGTCTAATGAAGTTCAGAATTCGTTGAGCCAATGATGAGCCTGAAACAGCTTGATTATTGAGTTTTTGTTTTTTGTTTTTTTATTTTTTATTTTTGGCGTTGCTTGACAAAACTATAGTTATCACGATTCAGTTTGGTTTGACAAGTAAAGCAAAAGGTTCTAGTTCTAAGAAGTTCTAGCCAGTCTTATAATTCACCTAGAGGCGTACCTCCGAGGAGGCCATCTAGTTTGTGGAGATTATTGCTTGAAATTCGTGTCGAGCTTTCTGAACAAAGTAGATTCAAGTTAAGGTATATTTAGGTTTCATCAAATCTCTACCATTCCACTTCTCGATGATTCCATTTGACATTTCTGGTATCTTTTTAAGTAGTGAAGTTTGGACCACGTTTCCTAGATAAGAAGAAGCAATGAAGTTTGCAAGAGAGCACACAGATGTTCATATTTTAGTTATCAAGATCACTTTAATGAACAAAGTAGATTTCTAGTTTGATCACACAGCAAGTTTTGGAAACGTTGTCATCAAATTTGAATAATACTTCGAGTAGAAAAATTACTTTGCCATTAGCCTAGCAAACGCTTCTGATGTCGTTTTAACTACGTTCTTAATTAATTTCAGGTACAAAAGCATGGATTCAAAATTTCGCCACCATTAAATTGATTCAAGAGGTGAGCTGAAAATTTTTGAGTCAATGTGCCGATCATGTGATTGGATCTGTGCGAATTGTGTGCTCTTTTCTTTTTTCTACTGCACTTTCTCACTGTTCTATTCCAACGTTCAGGTTGCTCCGCGTCATCTTTACTTTGATATCAGTTGATTCCTAGATATCAGTTGTTCTAGAAGCCTCAAATTGAAAGTATTCGATTCAAGGAAGCTTTGACTGGACACTAGAGCTTGATTCCTCAAACAAGGTATATTTAGCAACAATTGGATTTAGGCTTCATCTTCTTGTCACTTATGTTATTTCTTTGTTATCTCTTGAAATGTATACTTAATAGGTGAAACTAGGTTCTTGTAATTTCCTTTCTTTTATTTTATTTTTTAGACATCGCATAGCTCAAATTTTCTTGGTATTAGTATAACATATCATTTTTATCCTTTTTATTAGTAACAAGTTCATAATAGTTAACAGGATTATTTCTGGTAATTCTACAGGAATATGATTACTTCATTTCTTAAAGAAAATTATTTTTGCTAGACAAGTTCAGATTAAATATATATATATAATTTTGGTTTCCGACAGAAAAGAGGAAGTTGAAGGCACTTCGTAGTCATCATTATTTAGAAATTTTGCCAAAACTTTTCCACTATTGGAGAGATTGTTTTACTCAACTTTTTAAGAAAGTATTTGCGCAGGATACACTATTCTGAGAAGAATCCTATTATTTACCTTGTACATATTTAATCGTAGTGTGATGAAGACATGTTCGTGGCATCCTTGGTCTGCAACGTCGATGCTGAGTGTGAGAAACTTCTGCGTAAAGACATTGCAATTTGATATGGAGGTACGATCAAGCTGAGTATCAATTTAGTTATGAAGCTGCTTTGAACAGTCCATGACATGTCGATTATACCTTTCAAATTGAATTATCTTATAAATCCAAATGTCTCGTACCTTTATGTTTGATTTTAGTTATTCAACATTTGTTTACCTTTGAGGTTCTCTGGCCGCAGGAGATATGTAATTTTGGACGGTTTGTTGAATCAGCTGCCTCAACCGGAAATGTATCAGGTAATTTGCCTGTATGAAAACCCCATGGGATAGACAAGTTTTGTACTTCGTGCGATCTACTTTCTCTGGTTGTTCTTTTTCTTTAAATCATCTGAGAATTTACTCAGATCATCCATGTTTTCATCGTTCAGTGATGTATGTTGTCGACCTTACGACGGCTGTCTATTACCAAAAGTGTCACGATCCAGATTGTGGAGGTGCTCAAATAAAACTTAATTGTCAAAAAATTTTTTTTGGAAAAATATTTATTTGCAGCCATTGCTTAATTGAACTTATCACTCTACAGGTTACCGATCTCCACTGCGTCCAAGTCCAATTGATGCCATTCCTAATCCTCGGGTCTCCACGGATTCAGAACAGATATCAAATGGCATAGAGTCGTCCAACTGATGCCATCTTCGTGCATGCGTTTCCAACTCGCGAGCCGCTACGTTTCGGATGCAAGGTAAGCAAAAATCCCTGAACGCCTAATTATTTTCTGAACTCTTTGATATTGTCCATAGTTAATTGAGCTTAAGAGTCAAATTGTTCTGCTCCCCTCTCTAAGCTCCACACCATTAGAGAATCGGTTTTATTAACACAAATAGGATAAATTTCTATCTCGATCGCTATTAGCCATGGTTCGAAACATGAAATTAAATAGTAATTTTTACAAAAGCTTGACATAAATTTGTTACATTCAAAAGCGTCGCTATAGTAAATTAGCCCCCCACCTGTTGAAAATGAAAACTCAAGATATTACT

mRNA sequence

ATGTACTGCGAATCTCGTAAGGAAATACAGGACAATGCAACGAACGGCCAAGATTTCATGGAAAAATCTTATAATTCACCTAGAGGCGTACCTCCGAGGAGGCCATCTAGTTTGTGGAGATTATTGCTTGAAATTCGTGTCGAGCTTTCTGAACAAAGTAGATTCAAGTTAAGTGTGATGAAGACATGTTCGTGGCATCCTTGGTCTGCAACGTCGATGCTGAGTGTGAGAAACTTCTGCGTAAAGACATTGCAATTTGATATGGAGGAGATATGTAATTTTGGACGGTTTGTTGAATCAGCTGCCTCAACCGGAAATGTATCAGTGATGTATGTTGTCGACCTTACGACGGCTGTCTATTACCAAAAGTGTCACGATCCAGATTGTGGAGGTTACCGATCTCCACTGCGTCCAAGTCCAATTGATGCCATTCCTAATCCTCGGGTCTCCACGGATTCAGAACAGATATCAAATGGCATAGAGTCGTCCAACTGATGCCATCTTCGTGCATGCGTTTCCAACTCGCGAGCCGCTACGTTTCGGATGCAAGGTAAGCAAAAATCCCTGAACGCCTAATTATTTTCTGAACTCTTTGATATTGTCCATAGTTAATTGAGCTTAAGAGTCAAATTGTTCTGCTCCCCTCTCTAAGCTCCACACCATTAGAGAATCGGTTTTATTAACACAAATAGGATAAATTTCTATCTCGATCGCTATTAGCCATGGTTCGAAACATGAAATTAAATAGTAATTTTTACAAAAGCTTGACATAAATTTGTTACATTCAAAAGCGTCGCTATAGTAAATTAGCCCCCCACCTGTTGAAAATGAAAACTCAAGATATTACT

Coding sequence (CDS)

ATGTACTGCGAATCTCGTAAGGAAATACAGGACAATGCAACGAACGGCCAAGATTTCATGGAAAAATCTTATAATTCACCTAGAGGCGTACCTCCGAGGAGGCCATCTAGTTTGTGGAGATTATTGCTTGAAATTCGTGTCGAGCTTTCTGAACAAAGTAGATTCAAGTTAAGTGTGATGAAGACATGTTCGTGGCATCCTTGGTCTGCAACGTCGATGCTGAGTGTGAGAAACTTCTGCGTAAAGACATTGCAATTTGATATGGAGGAGATATGTAATTTTGGACGGTTTGTTGAATCAGCTGCCTCAACCGGAAATGTATCAGTGATGTATGTTGTCGACCTTACGACGGCTGTCTATTACCAAAAGTGTCACGATCCAGATTGTGGAGGTTACCGATCTCCACTGCGTCCAAGTCCAATTGATGCCATTCCTAATCCTCGGGTCTCCACGGATTCAGAACAGATATCAAATGGCATAGAGTCGTCCAACTGA

Protein sequence

MYCESRKEIQDNATNGQDFMEKSYNSPRGVPPRRPSSLWRLLLEIRVELSEQSRFKLSVMKTCSWHPWSATSMLSVRNFCVKTLQFDMEEICNFGRFVESAASTGNVSVMYVVDLTTAVYYQKCHDPDCGGYRSPLRPSPIDAIPNPRVSTDSEQISNGIESSN

Homology

[Close]

BLAST of Carg22134 vs. NCBI nr
Match: XP_016899008.1 (PREDICTED: DNA-directed primase/polymerase protein isoform X2 [Cucumis melo])

HSP 1 Score: 108.6 bits (270), Expect = 2.0e-20
Identity = 51/69 (73.91%), Postives = 60/69 (86.96%), Query Frame = 0


Query: 96  RFVESAASTGNVSVMYVVDLTTAVYYQKCHDPDCGGYRSPLRPSPIDAIPNPRVSTDSEQ 155
           +FV+S ASTG+V+VMYVVDL +A YYQKCHDPDC GYRSPLRP PIDAIP+P VSTDS Q
Sbjct: 424 KFVQSVASTGSVAVMYVVDLRSAAYYQKCHDPDCRGYRSPLRPIPIDAIPSPWVSTDSGQ 483

Query: 156 ISNGIESSN 165
           ISN + S++
Sbjct: 484 ISNDMVSTD 492

HSP 2 Score: 68.2 bits (165), Expect = 3.0e-08
Identity = 38/70 (54.29%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 7   KEIQDNATNGQDFMEK------------------SYNSPRGVPPRRPSSLWRLLLEIRVE 59
           +E ++NA++ QD +EK                   Y SPRGVPP+RPSSLWRLL EIRV+
Sbjct: 54  EEREENASSVQDTVEKIGLTSKDKGSRSKFSPIIFYGSPRGVPPKRPSSLWRLLREIRVD 113

[Close]

BLAST of Carg22134 vs. NCBI nr
Match: XP_022922834.1 (DNA-directed primase/polymerase protein [Cucurbita moschata])

HSP 1 Score: 92.8 bits (229), Expect = 1.1e-15
Identity = 53/105 (50.48%), Postives = 60/105 (57.14%), Query Frame = 0


Query: 96  RFVESAASTGNVS------------------------------------VMYVVDLTTAV 155
           +FVES ASTG+VS                                    VMYVVDL  A 
Sbjct: 425 KFVESVASTGSVSGKIRCWYWFSEYGLIVYSMSRNRYCERIGREHKSNHVMYVVDLRRAA 484

Query: 156 YYQKCHDPDCGGYRSPLRPSPIDAIPNPRVSTDSEQISNGIESSN 165
           YYQKCHDPDC GYRSPLRP+PID+IP+  VSTDSEQISN  ES++
Sbjct: 485 YYQKCHDPDCRGYRSPLRPTPIDSIPSQWVSTDSEQISNDRESTD 529

HSP 2 Score: 68.6 bits (166), Expect = 2.3e-08
Identity = 40/73 (54.79%), Postives = 46/73 (63.01%), Query Frame = 0


Query: 5   SRKEIQDNATNGQDFMEK-------------------SYNSPRGVPPRRPSSLWRLLLEI 59
           S KE+QDNA++ Q   EK                    Y SPRGVPP+RPSSLWRLL EI
Sbjct: 52  SVKEMQDNASSVQVTEEKIDLTSKEKGSSSKKFSPIVFYGSPRGVPPKRPSSLWRLLREI 111

[Close]

BLAST of Carg22134 vs. NCBI nr
Match: XP_022984668.1 (DNA-directed primase/polymerase protein-like [Cucurbita maxima])

HSP 1 Score: 92.0 bits (227), Expect = 2.0e-15
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 109 VMYVVDLTTAVYYQKCHDPDCGGYRSPLRPSPIDAIPNPRVSTDSEQISNGIESSN 165
           VMYVVDL  A YYQKCHDPDC GYRSPLRP+PID+IP+  VSTDSEQISN  ES++
Sbjct: 474 VMYVVDLRRAAYYQKCHDPDCRGYRSPLRPTPIDSIPSQLVSTDSEQISNDRESTD 529

HSP 2 Score: 69.3 bits (168), Expect = 1.4e-08
Identity = 41/73 (56.16%), Postives = 46/73 (63.01%), Query Frame = 0


Query: 5   SRKEIQDNATNGQDFMEK-------------------SYNSPRGVPPRRPSSLWRLLLEI 59
           S KE+QDNA++ Q   EK                    Y SPRGVPP+RPSSLWRLL EI
Sbjct: 52  SVKEMQDNASSVQVTEEKIDLTSKEKGSSSKKFSPIVFYGSPRGVPPKRPSSLWRLLREI 111

[Close]

BLAST of Carg22134 vs. NCBI nr
Match: XP_008439308.1 (PREDICTED: DNA-directed primase/polymerase protein isoform X1 [Cucumis melo])

HSP 1 Score: 91.7 bits (226), Expect = 2.6e-15
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 109 VMYVVDLTTAVYYQKCHDPDCGGYRSPLRPSPIDAIPNPRVSTDSEQISNGIESSN 165
           VMYVVDL +A YYQKCHDPDC GYRSPLRP PIDAIP+P VSTDS QISN + S++
Sbjct: 473 VMYVVDLRSAAYYQKCHDPDCRGYRSPLRPIPIDAIPSPWVSTDSGQISNDMVSTD 528

HSP 2 Score: 68.2 bits (165), Expect = 3.0e-08
Identity = 38/70 (54.29%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 7   KEIQDNATNGQDFMEK------------------SYNSPRGVPPRRPSSLWRLLLEIRVE 59
           +E ++NA++ QD +EK                   Y SPRGVPP+RPSSLWRLL EIRV+
Sbjct: 54  EEREENASSVQDTVEKIGLTSKDKGSRSKFSPIIFYGSPRGVPPKRPSSLWRLLREIRVD 113

[Close]

BLAST of Carg22134 vs. NCBI nr
Match: XP_023552310.1 (DNA-directed primase/polymerase protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 91.7 bits (226), Expect = 2.6e-15
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 109 VMYVVDLTTAVYYQKCHDPDCGGYRSPLRPSPIDAIPNPRVSTDSEQISNGIESSN 165
           VMYVVDL  A YYQKCHDPDC GYRSPLRP+PID+IP+  VSTDSEQISN  ES++
Sbjct: 470 VMYVVDLRRAAYYQKCHDPDCRGYRSPLRPTPIDSIPSQWVSTDSEQISNDRESTD 525

HSP 2 Score: 66.6 bits (161), Expect = 8.8e-08
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 24  YNSPRGVPPRRPSSLWRLLLEIRVELSEQSRFKLS 59
           Y SPRGVPP+RPSSLWRLL EIRV+LSEQSRFKLS
Sbjct: 86  YGSPRGVPPKRPSSLWRLLREIRVDLSEQSRFKLS 120

[Close]

BLAST of Carg22134 vs. TAIR10
Match: AT5G52800.3 (DNA primases)

HSP 1 Score: 59.7 bits (143), Expect = 2.0e-09
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 109 VMYVVDLTTAVYYQKCHDPDCGGYRSPLRPSPIDAIPNPRV 150
           VMY+VDL   +YYQKC+DPDC  YRSP+RP P   +P   V
Sbjct: 484 VMYIVDLRRGIYYQKCYDPDCRDYRSPIRPVPDSYLPEDMV 524

HSP 2 Score: 44.3 bits (103), Expect = 8.5e-05
Identity = 19/31 (61.29%), Postives = 25/31 (80.65%), Query Frame = 0


Query: 24  YNSPRGVPPRRPSSLWRLLLEIRVELSEQSR 55
           Y SP GVPP++P SL RLL EIR++LSE+ +
Sbjct: 101 YGSPNGVPPKKPLSLLRLLREIRIDLSEERK 131

[Close]

BLAST of Carg22134 vs. TrEMBL
Match: tr|A0A1S4DSS4|A0A1S4DSS4_CUCME (DNA-directed primase/polymerase protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484132 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.3e-20
Identity = 51/69 (73.91%), Postives = 60/69 (86.96%), Query Frame = 0


Query: 96  RFVESAASTGNVSVMYVVDLTTAVYYQKCHDPDCGGYRSPLRPSPIDAIPNPRVSTDSEQ 155
           +FV+S ASTG+V+VMYVVDL +A YYQKCHDPDC GYRSPLRP PIDAIP+P VSTDS Q
Sbjct: 424 KFVQSVASTGSVAVMYVVDLRSAAYYQKCHDPDCRGYRSPLRPIPIDAIPSPWVSTDSGQ 483

Query: 156 ISNGIESSN 165
           ISN + S++
Sbjct: 484 ISNDMVSTD 492

HSP 2 Score: 68.2 bits (165), Expect = 2.0e-08
Identity = 38/70 (54.29%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 7   KEIQDNATNGQDFMEK------------------SYNSPRGVPPRRPSSLWRLLLEIRVE 59
           +E ++NA++ QD +EK                   Y SPRGVPP+RPSSLWRLL EIRV+
Sbjct: 54  EEREENASSVQDTVEKIGLTSKDKGSRSKFSPIIFYGSPRGVPPKRPSSLWRLLREIRVD 113

[Close]

BLAST of Carg22134 vs. TrEMBL
Match: tr|A0A1S3AYI4|A0A1S3AYI4_CUCME (DNA-directed primase/polymerase protein isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484132 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.7e-15
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 109 VMYVVDLTTAVYYQKCHDPDCGGYRSPLRPSPIDAIPNPRVSTDSEQISNGIESSN 165
           VMYVVDL +A YYQKCHDPDC GYRSPLRP PIDAIP+P VSTDS QISN + S++
Sbjct: 473 VMYVVDLRSAAYYQKCHDPDCRGYRSPLRPIPIDAIPSPWVSTDSGQISNDMVSTD 528

HSP 2 Score: 68.2 bits (165), Expect = 2.0e-08
Identity = 38/70 (54.29%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 7   KEIQDNATNGQDFMEK------------------SYNSPRGVPPRRPSSLWRLLLEIRVE 59
           +E ++NA++ QD +EK                   Y SPRGVPP+RPSSLWRLL EIRV+
Sbjct: 54  EEREENASSVQDTVEKIGLTSKDKGSRSKFSPIIFYGSPRGVPPKRPSSLWRLLREIRVD 113

[Close]

BLAST of Carg22134 vs. TrEMBL
Match: tr|A0A0A0L6Q1|A0A0A0L6Q1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G184000 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.2e-15
Identity = 51/105 (48.57%), Postives = 59/105 (56.19%), Query Frame = 0


Query: 96  RFVESAASTGNVS------------------------------------VMYVVDLTTAV 155
           +FV+S ASTGNV+                                    VMYVVDL  A 
Sbjct: 424 KFVQSVASTGNVAGKIRCWYWFSEFGLIVYSMSSNRYCERIGREHKSNHVMYVVDLRRAA 483

Query: 156 YYQKCHDPDCGGYRSPLRPSPIDAIPNPRVSTDSEQISNGIESSN 165
           YYQKCHDPDC GYRSPLRP PIDAIP+P +STDS QISN + S++
Sbjct: 484 YYQKCHDPDCRGYRSPLRPIPIDAIPSPWISTDSGQISNDMVSTH 528

HSP 2 Score: 67.0 bits (162), Expect = 4.5e-08
Identity = 37/70 (52.86%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 7   KEIQDNATNGQDFMEK------------------SYNSPRGVPPRRPSSLWRLLLEIRVE 59
           ++ ++NA++ QD +EK                   Y SPRGVPP+RPSSLWRLL EIRV+
Sbjct: 54  EKAEENASSIQDTVEKIGLTSKDKGSRSKFSPIVFYGSPRGVPPKRPSSLWRLLREIRVD 113

[Close]

BLAST of Carg22134 vs. TrEMBL
Match: tr|A0A0B0PS57|A0A0B0PS57_GOSAR (Coiled-coil domain-containing protein OS=Gossypium arboreum OX=29729 GN=F383_12161 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 7.9e-13
Identity = 40/69 (57.97%), Postives = 46/69 (66.67%), Query Frame = 0


Query: 97  FVESAASTGNVSVMYVVDLTTAVYYQKCHDPDCGGYRSPLRPSPIDAIPNPRV----STD 156
           F+ S ASTGNV VMYVVD+  A YYQKC+DPDC GYRSPLRP P D +P+       S D
Sbjct: 72  FIVSIASTGNVPVMYVVDMRRAAYYQKCYDPDCKGYRSPLRPIPTDCVPDSSFFFDSSDD 131

Query: 157 SEQISNGIE 162
               SN +E
Sbjct: 132 GSFTSNNLE 140

[Close]

BLAST of Carg22134 vs. TrEMBL
Match: tr|A0A175YFU0|A0A175YFU0_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_030105 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.8e-12
Identity = 40/81 (49.38%), Postives = 48/81 (59.26%), Query Frame = 0


Query: 77  RNFCVKTLQFDMEEICNFGR--------FVESAASTGNVSVMYVVDLTTAVYYQKCHDPD 136
           RN    +   D   I   GR        FVES  S GN+SV+YVVDL  A YYQKCHDP+
Sbjct: 111 RNLLSNSCMIDSSRIFQTGRSPFPLLDMFVESVGSLGNISVIYVVDLRRAGYYQKCHDPN 170

Query: 137 CGGYRSPLRPSPIDAIPNPRV 150
           C GYRSPLRP P + +P+  +
Sbjct: 171 CRGYRSPLRPVPEEIVPDTTI 191

The following BLAST results are available for this feature:

BLAST of Carg22134 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016899008.1	2.0e-20	73.91	PREDICTED: DNA-directed primase/polymerase protein isoform X2 [Cucumis melo]	[more]
XP_022922834.1	1.1e-15	50.48	DNA-directed primase/polymerase protein [Cucurbita moschata]	[more]
XP_022984668.1	2.0e-15	76.79	DNA-directed primase/polymerase protein-like [Cucurbita maxima]	[more]
XP_008439308.1	2.6e-15	76.79	PREDICTED: DNA-directed primase/polymerase protein isoform X1 [Cucumis melo]	[more]
XP_023552310.1	2.6e-15	76.79	DNA-directed primase/polymerase protein [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg22134 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52800.3	2.0e-09	58.54	DNA primases	[more]

BLAST of Carg22134 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg22134 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DSS4\|A0A1S4DSS4_CUCME	1.3e-20	73.91	DNA-directed primase/polymerase protein isoform X2 OS=Cucumis melo OX=3656 GN=LO...	[more]
tr\|A0A1S3AYI4\|A0A1S3AYI4_CUCME	1.7e-15	76.79	DNA-directed primase/polymerase protein isoform X1 OS=Cucumis melo OX=3656 GN=LO...	[more]
tr\|A0A0A0L6Q1\|A0A0A0L6Q1_CUCSA	2.2e-15	48.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G184000 PE=4 SV=1	[more]
tr\|A0A0B0PS57\|A0A0B0PS57_GOSAR	7.9e-13	57.97	Coiled-coil domain-containing protein OS=Gossypium arboreum OX=29729 GN=F383_121...	[more]
tr\|A0A175YFU0\|A0A175YFU0_DAUCA	1.8e-12	49.38	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_030105 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22134-RA	Carg22134-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF03121	Herpes_UL52	coord: 108..137 e-value: 1.8E-4 score: 21.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..164
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 146..164
None	No IPR available	PANTHER	PTHR31399	FAMILY NOT NAMED	coord: 108..156

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22134	Cla006142	Watermelon (97103) v1	carwmB0736
Carg22134	Csa3G184000	Cucumber (Chinese Long) v2	carcuB0754
Carg22134	MELO3C006956	Melon (DHL92) v3.5.1	carmeB0734
Carg22134	ClCG05G008450	Watermelon (Charleston Gray)	carwcgB0715
Carg22134	CSPI03G17330	Wild cucumber (PI 183967)	carcpiB0771
Carg22134	Cucsa.108190	Cucumber (Gy14) v1	carcgyB0828
Carg22134	CmaCh16G000950	Cucurbita maxima (Rimu)	carcmaB1031
Carg22134	CmaCh18G012730	Cucurbita maxima (Rimu)	carcmaB1032
Carg22134	CmoCh16G001020	Cucurbita moschata (Rifu)	carcmoB1002
Carg22134	CmoCh18G013040	Cucurbita moschata (Rifu)	carcmoB1003
Carg22134	Lsi05G011870	Bottle gourd (USVL1VR-Ls)	carlsiB675
Carg22134	CsGy3G017380	Cucumber (Gy14) v2	carcgybB0733
Carg22134	MELO3C006956.2	Melon (DHL92) v3.6.1	carmedB0745
Carg22134	CsaV3_3G017530	Cucumber (Chinese Long) v3	carcucB0774
Carg22134	Cla97C05G090560	Watermelon (97103) v2	carwmbB0772
Carg22134	Bhi01G001034	Wax gourd	carwgoB0870

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg22134	Carg15104	Silver-seed gourd	carcarB594

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22134	Silver-seed gourd	carcarB583
Carg22134	Cucurbita pepo (Zucchini)	carcpeB1038
Carg22134	Cucurbita pepo (Zucchini)	carcpeB1039
Carg22134	Melon (DHL92) v3.5.1	carmeB0732
Carg22134	Melon (DHL92) v3.6.1	carmedB0743