Carg22134-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTACTGCGAATCTCGTTTTTAGACACAATGAATTTCACTGTGAAGCAATTGTAATTATTGTAGAAAAACTACTAGATTTTGTGAACTGGAATCACGATAGAGGAGCAATGTTATAGGTCGAATTTTCTGCTGTGATTTGGTGATCAGCATGGATGTTCTTTGTTTCTGTATTTTCTGCTTCTGATTATGTGCGGTTATCCATCCTGTTTCTGTTCAGAATCTTCTGTGAGAGGAAAAAAGAAAGAAAAAGTAAATTGAAGCCTGAGAGTTCAGCAAACTTTGAGACTCCAGTTTCTGTTTCAGGTAAGGAAATACAGGACAATGCAACGAACGGCCAAGATTTCATGGAAAAAGTAAGTCATTGTTTTCTGGATGGCGGAGTTCGCCTGAATTCCATGAACTTATTCTTCATATGGTTATTCTAGTATTTCATCCGTCTAATGAAGTTCAGAATTCGTTGAGCCAATGATGAGCCTGAAACAGCTTGATTATTGAGTTTTTGTTTTTTGTTTTTTTATTTTTTATTTTTGGCGTTGCTTGACAAAACTATAGTTATCACGATTCAGTTTGGTTTGACAAGTAAAGCAAAAGGTTCTAGTTCTAAGAAGTTCTAGCCAGTCTTATAATTCACCTAGAGGCGTACCTCCGAGGAGGCCATCTAGTTTGTGGAGATTATTGCTTGAAATTCGTGTCGAGCTTTCTGAACAAAGTAGATTCAAGTTAAGGTATATTTAGGTTTCATCAAATCTCTACCATTCCACTTCTCGATGATTCCATTTGACATTTCTGGTATCTTTTTAAGTAGTGAAGTTTGGACCACGTTTCCTAGATAAGAAGAAGCAATGAAGTTTGCAAGAGAGCACACAGATGTTCATATTTTAGTTATCAAGATCACTTTAATGAACAAAGTAGATTTCTAGTTTGATCACACAGCAAGTTTTGGAAACGTTGTCATCAAATTTGAATAATACTTCGAGTAGAAAAATTACTTTGCCATTAGCCTAGCAAACGCTTCTGATGTCGTTTTAACTACGTTCTTAATTAATTTCAGGTACAAAAGCATGGATTCAAAATTTCGCCACCATTAAATTGATTCAAGAGGTGAGCTGAAAATTTTTGAGTCAATGTGCCGATCATGTGATTGGATCTGTGCGAATTGTGTGCTCTTTTCTTTTTTCTACTGCACTTTCTCACTGTTCTATTCCAACGTTCAGGTTGCTCCGCGTCATCTTTACTTTGATATCAGTTGATTCCTAGATATCAGTTGTTCTAGAAGCCTCAAATTGAAAGTATTCGATTCAAGGAAGCTTTGACTGGACACTAGAGCTTGATTCCTCAAACAAGGTATATTTAGCAACAATTGGATTTAGGCTTCATCTTCTTGTCACTTATGTTATTTCTTTGTTATCTCTTGAAATGTATACTTAATAGGTGAAACTAGGTTCTTGTAATTTCCTTTCTTTTATTTTATTTTTTAGACATCGCATAGCTCAAATTTTCTTGGTATTAGTATAACATATCATTTTTATCCTTTTTATTAGTAACAAGTTCATAATAGTTAACAGGATTATTTCTGGTAATTCTACAGGAATATGATTACTTCATTTCTTAAAGAAAATTATTTTTGCTAGACAAGTTCAGATTAAATATATATATATAATTTTGGTTTCCGACAGAAAAGAGGAAGTTGAAGGCACTTCGTAGTCATCATTATTTAGAAATTTTGCCAAAACTTTTCCACTATTGGAGAGATTGTTTTACTCAACTTTTTAAGAAAGTATTTGCGCAGGATACACTATTCTGAGAAGAATCCTATTATTTACCTTGTACATATTTAATCGTAGTGTGATGAAGACATGTTCGTGGCATCCTTGGTCTGCAACGTCGATGCTGAGTGTGAGAAACTTCTGCGTAAAGACATTGCAATTTGATATGGAGGTACGATCAAGCTGAGTATCAATTTAGTTATGAAGCTGCTTTGAACAGTCCATGACATGTCGATTATACCTTTCAAATTGAATTATCTTATAAATCCAAATGTCTCGTACCTTTATGTTTGATTTTAGTTATTCAACATTTGTTTACCTTTGAGGTTCTCTGGCCGCAGGAGATATGTAATTTTGGACGGTTTGTTGAATCAGCTGCCTCAACCGGAAATGTATCAGGTAATTTGCCTGTATGAAAACCCCATGGGATAGACAAGTTTTGTACTTCGTGCGATCTACTTTCTCTGGTTGTTCTTTTTCTTTAAATCATCTGAGAATTTACTCAGATCATCCATGTTTTCATCGTTCAGTGATGTATGTTGTCGACCTTACGACGGCTGTCTATTACCAAAAGTGTCACGATCCAGATTGTGGAGGTGCTCAAATAAAACTTAATTGTCAAAAAATTTTTTTTGGAAAAATATTTATTTGCAGCCATTGCTTAATTGAACTTATCACTCTACAGGTTACCGATCTCCACTGCGTCCAAGTCCAATTGATGCCATTCCTAATCCTCGGGTCTCCACGGATTCAGAACAGATATCAAATGGCATAGAGTCGTCCAACTGATGCCATCTTCGTGCATGCGTTTCCAACTCGCGAGCCGCTACGTTTCGGATGCAAGGTAAGCAAAAATCCCTGAACGCCTAATTATTTTCTGAACTCTTTGATATTGTCCATAGTTAATTGAGCTTAAGAGTCAAATTGTTCTGCTCCCCTCTCTAAGCTCCACACCATTAGAGAATCGGTTTTATTAACACAAATAGGATAAATTTCTATCTCGATCGCTATTAGCCATGGTTCGAAACATGAAATTAAATAGTAATTTTTACAAAAGCTTGACATAAATTTGTTACATTCAAAAGCGTCGCTATAGTAAATTAGCCCCCCACCTGTTGAAAATGAAAACTCAAGATATTACT ATGTACTGCGAATCTCGTAAGGAAATACAGGACAATGCAACGAACGGCCAAGATTTCATGGAAAAATCTTATAATTCACCTAGAGGCGTACCTCCGAGGAGGCCATCTAGTTTGTGGAGATTATTGCTTGAAATTCGTGTCGAGCTTTCTGAACAAAGTAGATTCAAGTTAAGTGTGATGAAGACATGTTCGTGGCATCCTTGGTCTGCAACGTCGATGCTGAGTGTGAGAAACTTCTGCGTAAAGACATTGCAATTTGATATGGAGGAGATATGTAATTTTGGACGGTTTGTTGAATCAGCTGCCTCAACCGGAAATGTATCAGTGATGTATGTTGTCGACCTTACGACGGCTGTCTATTACCAAAAGTGTCACGATCCAGATTGTGGAGGTTACCGATCTCCACTGCGTCCAAGTCCAATTGATGCCATTCCTAATCCTCGGGTCTCCACGGATTCAGAACAGATATCAAATGGCATAGAGTCGTCCAACTGATGCCATCTTCGTGCATGCGTTTCCAACTCGCGAGCCGCTACGTTTCGGATGCAAGGTAAGCAAAAATCCCTGAACGCCTAATTATTTTCTGAACTCTTTGATATTGTCCATAGTTAATTGAGCTTAAGAGTCAAATTGTTCTGCTCCCCTCTCTAAGCTCCACACCATTAGAGAATCGGTTTTATTAACACAAATAGGATAAATTTCTATCTCGATCGCTATTAGCCATGGTTCGAAACATGAAATTAAATAGTAATTTTTACAAAAGCTTGACATAAATTTGTTACATTCAAAAGCGTCGCTATAGTAAATTAGCCCCCCACCTGTTGAAAATGAAAACTCAAGATATTACT ATGTACTGCGAATCTCGTAAGGAAATACAGGACAATGCAACGAACGGCCAAGATTTCATGGAAAAATCTTATAATTCACCTAGAGGCGTACCTCCGAGGAGGCCATCTAGTTTGTGGAGATTATTGCTTGAAATTCGTGTCGAGCTTTCTGAACAAAGTAGATTCAAGTTAAGTGTGATGAAGACATGTTCGTGGCATCCTTGGTCTGCAACGTCGATGCTGAGTGTGAGAAACTTCTGCGTAAAGACATTGCAATTTGATATGGAGGAGATATGTAATTTTGGACGGTTTGTTGAATCAGCTGCCTCAACCGGAAATGTATCAGTGATGTATGTTGTCGACCTTACGACGGCTGTCTATTACCAAAAGTGTCACGATCCAGATTGTGGAGGTTACCGATCTCCACTGCGTCCAAGTCCAATTGATGCCATTCCTAATCCTCGGGTCTCCACGGATTCAGAACAGATATCAAATGGCATAGAGTCGTCCAACTGA MYCESRKEIQDNATNGQDFMEKSYNSPRGVPPRRPSSLWRLLLEIRVELSEQSRFKLSVMKTCSWHPWSATSMLSVRNFCVKTLQFDMEEICNFGRFVESAASTGNVSVMYVVDLTTAVYYQKCHDPDCGGYRSPLRPSPIDAIPNPRVSTDSEQISNGIESSN
BLAST of Carg22134-RA vs. NCBI nr
Match: XP_016899008.1 (PREDICTED: DNA-directed primase/polymerase protein isoform X2 [Cucumis melo]) HSP 1 Score: 108.6 bits (270), Expect = 2.0e-20 Identity = 51/69 (73.91%), Postives = 60/69 (86.96%), Query Frame = 0
HSP 2 Score: 68.2 bits (165), Expect = 3.0e-08 Identity = 38/70 (54.29%), Postives = 46/70 (65.71%), Query Frame = 0
BLAST of Carg22134-RA vs. NCBI nr
Match: XP_022922834.1 (DNA-directed primase/polymerase protein [Cucurbita moschata]) HSP 1 Score: 92.8 bits (229), Expect = 1.1e-15 Identity = 53/105 (50.48%), Postives = 60/105 (57.14%), Query Frame = 0
HSP 2 Score: 68.6 bits (166), Expect = 2.3e-08 Identity = 40/73 (54.79%), Postives = 46/73 (63.01%), Query Frame = 0
BLAST of Carg22134-RA vs. NCBI nr
Match: XP_022984668.1 (DNA-directed primase/polymerase protein-like [Cucurbita maxima]) HSP 1 Score: 92.0 bits (227), Expect = 2.0e-15 Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 0
HSP 2 Score: 69.3 bits (168), Expect = 1.4e-08 Identity = 41/73 (56.16%), Postives = 46/73 (63.01%), Query Frame = 0
BLAST of Carg22134-RA vs. NCBI nr
Match: XP_008439308.1 (PREDICTED: DNA-directed primase/polymerase protein isoform X1 [Cucumis melo]) HSP 1 Score: 91.7 bits (226), Expect = 2.6e-15 Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 0
HSP 2 Score: 68.2 bits (165), Expect = 3.0e-08 Identity = 38/70 (54.29%), Postives = 46/70 (65.71%), Query Frame = 0
BLAST of Carg22134-RA vs. NCBI nr
Match: XP_023552310.1 (DNA-directed primase/polymerase protein [Cucurbita pepo subsp. pepo]) HSP 1 Score: 91.7 bits (226), Expect = 2.6e-15 Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 0
HSP 2 Score: 66.6 bits (161), Expect = 8.8e-08 Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 0
BLAST of Carg22134-RA vs. TAIR10
Match: AT5G52800.3 (DNA primases) HSP 1 Score: 59.7 bits (143), Expect = 2.0e-09 Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 0
HSP 2 Score: 44.3 bits (103), Expect = 8.5e-05 Identity = 19/31 (61.29%), Postives = 25/31 (80.65%), Query Frame = 0
BLAST of Carg22134-RA vs. TrEMBL
Match: tr|A0A1S4DSS4|A0A1S4DSS4_CUCME (DNA-directed primase/polymerase protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484132 PE=4 SV=1) HSP 1 Score: 108.6 bits (270), Expect = 1.3e-20 Identity = 51/69 (73.91%), Postives = 60/69 (86.96%), Query Frame = 0
HSP 2 Score: 68.2 bits (165), Expect = 2.0e-08 Identity = 38/70 (54.29%), Postives = 46/70 (65.71%), Query Frame = 0
BLAST of Carg22134-RA vs. TrEMBL
Match: tr|A0A1S3AYI4|A0A1S3AYI4_CUCME (DNA-directed primase/polymerase protein isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484132 PE=4 SV=1) HSP 1 Score: 91.7 bits (226), Expect = 1.7e-15 Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 0
HSP 2 Score: 68.2 bits (165), Expect = 2.0e-08 Identity = 38/70 (54.29%), Postives = 46/70 (65.71%), Query Frame = 0
BLAST of Carg22134-RA vs. TrEMBL
Match: tr|A0A0A0L6Q1|A0A0A0L6Q1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G184000 PE=4 SV=1) HSP 1 Score: 91.3 bits (225), Expect = 2.2e-15 Identity = 51/105 (48.57%), Postives = 59/105 (56.19%), Query Frame = 0
HSP 2 Score: 67.0 bits (162), Expect = 4.5e-08 Identity = 37/70 (52.86%), Postives = 46/70 (65.71%), Query Frame = 0
BLAST of Carg22134-RA vs. TrEMBL
Match: tr|A0A0B0PS57|A0A0B0PS57_GOSAR (Coiled-coil domain-containing protein OS=Gossypium arboreum OX=29729 GN=F383_12161 PE=4 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 7.9e-13 Identity = 40/69 (57.97%), Postives = 46/69 (66.67%), Query Frame = 0
BLAST of Carg22134-RA vs. TrEMBL
Match: tr|A0A175YFU0|A0A175YFU0_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_030105 PE=4 SV=1) HSP 1 Score: 81.6 bits (200), Expect = 1.8e-12 Identity = 40/81 (49.38%), Postives = 48/81 (59.26%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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