Carg22097 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22097
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	25.3 kDa vesicle transport protein
Location	Cucurbita_argyrosperma_scaffold_229 : 90402 .. 90925 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGCAGATAATATTATTAGCAATATTAGGAAGCGATACATTGATACAAGAACACAAGCTAATCTATACAAGCTCAATGATAACCGTGGTCAAATTGATCTAGACATGGTTACTTGTTCGTTCTCTGAAATTTTTGAAAGAAAGAGAAAGATAACGGGTAATTGTTCTTAATTTTTAAGCCATAATAATTCAAATAAGTTTTTGATTAACCGAGCTTTTGTAGATACAGTGGAAAGATCAATTTGTAATGCAAATTCCTCTTCCATTTGGAGCTTTTCAATTCTCAAGGTAATTTAGTTGATTTTCTTTCATTTTCTTTCATTTTCTTGGCAACCAAACAAAGGGTAAGCATTAATTTTTGTTTGTATGGACAGGAAATTGGGTTGAAATGGACGCCAGTGGTTGTAACTTTTGGTGTAGTGCTTGTACTTTTATGGGCTTCCTTTCTTCTCTTCGACATCTCATTATCTCATCATAATCAATTTGTAATTCTATATAACAATAGAAAATTGTTTCACTAA

mRNA sequence

ATGTATGCAGATAATATTATTAGCAATATTAGGAAGCGATACATTGATACAAGAACACAAGCTAATCTATACAAGCTCAATGATAACCGTGGTCAAATTGATCTAGACATGGTTACTTGTTCGTTCTCTGAAATTTTTGAAAGAAAGAGAAAGATAACGGATACAGTGGAAAGATCAATTTGTAATGCAAATTCCTCTTCCATTTGGAGCTTTTCAATTCTCAAGGAAATTGGGTTGAAATGGACGCCAGTGGTTGTAACTTTTGGTGTAGTGCTTGTACTTTTATGGGCTTCCTTTCTTCTCTTCGACATCTCATTATCTCATCATAATCAATTTGTAATTCTATATAACAATAGAAAATTGTTTCACTAA

Coding sequence (CDS)

ATGTATGCAGATAATATTATTAGCAATATTAGGAAGCGATACATTGATACAAGAACACAAGCTAATCTATACAAGCTCAATGATAACCGTGGTCAAATTGATCTAGACATGGTTACTTGTTCGTTCTCTGAAATTTTTGAAAGAAAGAGAAAGATAACGGATACAGTGGAAAGATCAATTTGTAATGCAAATTCCTCTTCCATTTGGAGCTTTTCAATTCTCAAGGAAATTGGGTTGAAATGGACGCCAGTGGTTGTAACTTTTGGTGTAGTGCTTGTACTTTTATGGGCTTCCTTTCTTCTCTTCGACATCTCATTATCTCATCATAATCAATTTGTAATTCTATATAACAATAGAAAATTGTTTCACTAA

Protein sequence

MYADNIISNIRKRYIDTRTQANLYKLNDNRGQIDLDMVTCSFSEIFERKRKITDTVERSICNANSSSIWSFSILKEIGLKWTPVVVTFGVVLVLLWASFLLFDISLSHHNQFVILYNNRKLFH

Homology

[Close]

BLAST of Carg22097 vs. NCBI nr
Match: XP_023541413.1 (25.3 kDa vesicle transport protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 229.2 bits (583), Expect = 7.7e-57
Identity = 112/120 (93.33%), Postives = 118/120 (98.33%), Query Frame = 0


Query: 4   DNIISNIRKRYIDTRTQANLYKLNDNRGQIDLDMVTCSFSEIFERKRKITDTVERSICNA 63
           DNIISNIRKRYIDTRTQANLYKLNDNRGQIDLDM+TCSFSEIFER+RKITDT+ERSICNA
Sbjct: 130 DNIISNIRKRYIDTRTQANLYKLNDNRGQIDLDMITCSFSEIFERRRKITDTMERSICNA 189

Query: 64  NSSSIWSFSILKEIGLKWTPVVVTFGVVLVLLWASFLLFDISLSHHNQFVILYNNRKLFH 123
           NSSSIWS+S LKEIGLKWTP+VVTFG VLVLLWASFLLFDISL+HHNQFVILYNNRKLFH
Sbjct: 190 NSSSIWSYSFLKEIGLKWTPMVVTFGAVLVLLWASFLLFDISLAHHNQFVILYNNRKLFH 249

[Close]

BLAST of Carg22097 vs. NCBI nr
Match: XP_022944814.1 (25.3 kDa vesicle transport protein isoform X1 [Cucurbita moschata])

HSP 1 Score: 221.9 bits (564), Expect = 1.2e-54
Identity = 111/120 (92.50%), Postives = 113/120 (94.17%), Query Frame = 0


Query: 4   DNIISNIRKRYIDTRTQANLYKLNDNRGQIDLDMVTCSFSEIFERKRKITDTVERSICNA 63
           DNII NIRKRYIDTRTQ NLYKLND RGQ DLDMVTCSF EIFER+RKITD  ERSICNA
Sbjct: 161 DNIIINIRKRYIDTRTQVNLYKLNDGRGQTDLDMVTCSFFEIFERRRKITDRAERSICNA 220

Query: 64  NSSSIWSFSILKEIGLKWTPVVVTFGVVLVLLWASFLLFDISLSHHNQFVILYNNRKLFH 123
           NSSSIWSFSI+KEIGLKWTPVVVTFGVVLVLLWASFLLFDISLSHHNQFVILYNNRKLFH
Sbjct: 221 NSSSIWSFSIVKEIGLKWTPVVVTFGVVLVLLWASFLLFDISLSHHNQFVILYNNRKLFH 280

[Close]

BLAST of Carg22097 vs. NCBI nr
Match: XP_022968542.1 (25.3 kDa vesicle transport protein isoform X1 [Cucurbita maxima])

HSP 1 Score: 220.7 bits (561), Expect = 2.7e-54
Identity = 110/120 (91.67%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 4   DNIISNIRKRYIDTRTQANLYKLNDNRGQIDLDMVTCSFSEIFERKRKITDTVERSICNA 63
           DNIISNIRKRYIDTRTQ NLYKLND+R Q DLD+VTCS SEIFER+RKITD VERSICNA
Sbjct: 118 DNIISNIRKRYIDTRTQVNLYKLNDSRSQTDLDIVTCSISEIFERRRKITDMVERSICNA 177

Query: 64  NSSSIWSFSILKEIGLKWTPVVVTFGVVLVLLWASFLLFDISLSHHNQFVILYNNRKLFH 123
           NSSSIWSFS +KEIGLKWTPVVVTFGVVLVLLWASFLLFDISLSHHNQFVILYNNRKLFH
Sbjct: 178 NSSSIWSFSFVKEIGLKWTPVVVTFGVVLVLLWASFLLFDISLSHHNQFVILYNNRKLFH 237

[Close]

BLAST of Carg22097 vs. NCBI nr
Match: XP_008439222.1 (PREDICTED: 25.3 kDa vesicle transport protein isoform X1 [Cucumis melo])

HSP 1 Score: 172.9 bits (437), Expect = 6.6e-40
Identity = 91/123 (73.98%), Postives = 103/123 (83.74%), Query Frame = 0


Query: 4   DNIISNIRKRYIDTRTQANLYKLNDNRGQIDLDMVTCSFSEIFERKRKITDTVERSICNA 63
           D+IISN+RK+YIDTRTQ NL KLN NR Q D D+++CSFSEI ER+RK+ D  ERS CN 
Sbjct: 118 DSIISNVRKQYIDTRTQVNLCKLNANRRQPDPDILSCSFSEILERRRKL-DIEERSRCNT 177

Query: 64  N----SSSIWSFSILKEIGLKWTPVVVTFGVVLVLLWASFLLFDISLSHHNQFVILYNNR 123
           N    SSSIW    L+EIGLKWTP+VVTFGVVL++LWASFLLFDISLSHHNQFVILYNNR
Sbjct: 178 NSQGTSSSIWGSPYLEEIGLKWTPMVVTFGVVLIVLWASFLLFDISLSHHNQFVILYNNR 237

[Close]

BLAST of Carg22097 vs. NCBI nr
Match: XP_016898989.1 (PREDICTED: 25.3 kDa vesicle transport protein isoform X2 [Cucumis melo])

HSP 1 Score: 172.9 bits (437), Expect = 6.6e-40
Identity = 91/123 (73.98%), Postives = 103/123 (83.74%), Query Frame = 0


Query: 4   DNIISNIRKRYIDTRTQANLYKLNDNRGQIDLDMVTCSFSEIFERKRKITDTVERSICNA 63
           D+IISN+RK+YIDTRTQ NL KLN NR Q D D+++CSFSEI ER+RK+ D  ERS CN 
Sbjct: 75  DSIISNVRKQYIDTRTQVNLCKLNANRRQPDPDILSCSFSEILERRRKL-DIEERSRCNT 134

Query: 64  N----SSSIWSFSILKEIGLKWTPVVVTFGVVLVLLWASFLLFDISLSHHNQFVILYNNR 123
           N    SSSIW    L+EIGLKWTP+VVTFGVVL++LWASFLLFDISLSHHNQFVILYNNR
Sbjct: 135 NSQGTSSSIWGSPYLEEIGLKWTPMVVTFGVVLIVLWASFLLFDISLSHHNQFVILYNNR 194

[Close]

BLAST of Carg22097 vs. TAIR10
Match: AT5G52270.1 (SNARE-like superfamily protein)

HSP 1 Score: 47.0 bits (110), Expect = 9.8e-06
Identity = 26/45 (57.78%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 6   IISNIRKRYIDTRTQANLYKLNDNRGQIDLDMVTCSFSEIFERKR 51
           II  IRK+YIDTRTQANL KLN  R Q +LD+VT   ++I +R++
Sbjct: 122 IIGRIRKQYIDTRTQANLSKLNALRKQ-ELDVVTEHLNDIIQRQQ 165

[Close]

BLAST of Carg22097 vs. TAIR10
Match: AT1G11890.1 (Synaptobrevin family protein)

HSP 1 Score: 46.6 bits (109), Expect = 1.3e-05
Identity = 31/97 (31.96%), Postives = 47/97 (48.45%), Query Frame = 0


Query: 4   DNIISNIRKRYIDTRTQANLYKLNDNRGQIDLDMVTCSFSEIFERKRKITDTVERSICNA 63
           D  I   +K Y DTRTQ N+ KLND   ++   ++T +  E+     K+    E S    
Sbjct: 117 DTFIQKTKKLYQDTRTQRNIAKLNDELYEVH-QIMTRNVQEVLGVGEKLDQVSEMSSRLT 176

Query: 64  NSSSIWSFSI----LKEIGLKWTPVVVTFGVVLVLLW 97
           + S I++        + +  KW PV + FGVV +L W
Sbjct: 177 SESRIYADKAKDLNRQALIRKWAPVAIVFGVVFLLFW 212

[Close]

BLAST of Carg22097 vs. Swiss-Prot
Match: sp|Q94AU2|SEC22_ARATH (25.3 kDa vesicle transport protein OS=Arabidopsis thaliana OX=3702 GN=SEC22 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.3e-04
Identity = 31/97 (31.96%), Postives = 47/97 (48.45%), Query Frame = 0


Query: 4   DNIISNIRKRYIDTRTQANLYKLNDNRGQIDLDMVTCSFSEIFERKRKITDTVERSICNA 63
           D  I   +K Y DTRTQ N+ KLND   ++   ++T +  E+     K+    E S    
Sbjct: 117 DTFIQKTKKLYQDTRTQRNIAKLNDELYEVH-QIMTRNVQEVLGVGEKLDQVSEMSSRLT 176

Query: 64  NSSSIWSFSI----LKEIGLKWTPVVVTFGVVLVLLW 97
           + S I++        + +  KW PV + FGVV +L W
Sbjct: 177 SESRIYADKAKDLNRQALIRKWAPVAIVFGVVFLLFW 212

[Close]

BLAST of Carg22097 vs. TrEMBL
Match: tr|A0A1S4DSM7|A0A1S4DSM7_CUCME (25.3 kDa vesicle transport protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484073 PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 4.3e-40
Identity = 91/123 (73.98%), Postives = 103/123 (83.74%), Query Frame = 0


Query: 4   DNIISNIRKRYIDTRTQANLYKLNDNRGQIDLDMVTCSFSEIFERKRKITDTVERSICNA 63
           D+IISN+RK+YIDTRTQ NL KLN NR Q D D+++CSFSEI ER+RK+ D  ERS CN 
Sbjct: 75  DSIISNVRKQYIDTRTQVNLCKLNANRRQPDPDILSCSFSEILERRRKL-DIEERSRCNT 134

Query: 64  N----SSSIWSFSILKEIGLKWTPVVVTFGVVLVLLWASFLLFDISLSHHNQFVILYNNR 123
           N    SSSIW    L+EIGLKWTP+VVTFGVVL++LWASFLLFDISLSHHNQFVILYNNR
Sbjct: 135 NSQGTSSSIWGSPYLEEIGLKWTPMVVTFGVVLIVLWASFLLFDISLSHHNQFVILYNNR 194

[Close]

BLAST of Carg22097 vs. TrEMBL
Match: tr|A0A1S3AYX3|A0A1S3AYX3_CUCME (25.3 kDa vesicle transport protein isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484073 PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 4.3e-40
Identity = 91/123 (73.98%), Postives = 103/123 (83.74%), Query Frame = 0


Query: 4   DNIISNIRKRYIDTRTQANLYKLNDNRGQIDLDMVTCSFSEIFERKRKITDTVERSICNA 63
           D+IISN+RK+YIDTRTQ NL KLN NR Q D D+++CSFSEI ER+RK+ D  ERS CN 
Sbjct: 118 DSIISNVRKQYIDTRTQVNLCKLNANRRQPDPDILSCSFSEILERRRKL-DIEERSRCNT 177

Query: 64  N----SSSIWSFSILKEIGLKWTPVVVTFGVVLVLLWASFLLFDISLSHHNQFVILYNNR 123
           N    SSSIW    L+EIGLKWTP+VVTFGVVL++LWASFLLFDISLSHHNQFVILYNNR
Sbjct: 178 NSQGTSSSIWGSPYLEEIGLKWTPMVVTFGVVLIVLWASFLLFDISLSHHNQFVILYNNR 237

[Close]

BLAST of Carg22097 vs. TrEMBL
Match: tr|A0A0A0LBE2|A0A0A0LBE2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182070 PE=3 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 4.1e-38
Identity = 90/125 (72.00%), Postives = 100/125 (80.00%), Query Frame = 0


Query: 4   DNIISNIRKRYIDTRTQANLYKLNDNRGQIDLDMVTCSFSEIFERKRKITDTVERSICN- 63
           D+IISN+RK+YIDTRTQANL KLN NR Q D D+ TCS SEI ER+RK  D VERS  N 
Sbjct: 118 DSIISNVRKQYIDTRTQANLSKLNANRRQPDPDISTCSLSEILERRRKF-DMVERSRSNN 177

Query: 64  -----ANSSSIWSFSILKEIGLKWTPVVVTFGVVLVLLWASFLLFDISLSHHNQFVILYN 123
                 NS SIW    L+EIG+KWTP+VVTFGVVL++LWASFLLFDISLSHHNQFVILYN
Sbjct: 178 NTNSEGNSCSIWGSPYLEEIGVKWTPMVVTFGVVLIVLWASFLLFDISLSHHNQFVILYN 237

[Close]

BLAST of Carg22097 vs. TrEMBL
Match: tr|A0A1S4DTG2|A0A1S4DTG2_CUCME (25.3 kDa vesicle transport protein isoform X3 OS=Cucumis melo OX=3656 GN=LOC103484073 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.6e-21
Identity = 57/73 (78.08%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 54  DTVERSICNAN----SSSIWSFSILKEIGLKWTPVVVTFGVVLVLLWASFLLFDISLSHH 113
           D  ERS CN N    SSSIW    L+EIGLKWTP+VVTFGVVL++LWASFLLFDISLSHH
Sbjct: 118 DIEERSRCNTNSQGTSSSIWGSPYLEEIGLKWTPMVVTFGVVLIVLWASFLLFDISLSHH 177

Query: 114 NQFVILYNNRKLF 123
           NQFVILYNNRKLF
Sbjct: 178 NQFVILYNNRKLF 190

[Close]

BLAST of Carg22097 vs. TrEMBL
Match: tr|A0A2I4F9N3|A0A2I4F9N3_9ROSI (25.3 kDa vesicle transport protein OS=Juglans regia OX=51240 GN=LOC108996789 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.7e-15
Identity = 55/104 (52.88%), Postives = 67/104 (64.42%), Query Frame = 0


Query: 4   DNIISNIRKRYIDTRTQANLYKLNDNRGQIDLDMVTCSFSEIFERKRKITDTVERSICNA 63
           D+II NIRKRYIDTRTQANL KL+ NR Q DLD+VT   SEI E  R+ +D +   I   
Sbjct: 127 DSIIGNIRKRYIDTRTQANLSKLSANRKQ-DLDIVTKHVSEILECSRQNSDQIPERILIM 186

Query: 64  NS----SSIWSFSILKEIGLKWTPVVVTFGVVLVLLWASFLLFD 104
            +    SSIW    L+ + LKWTP+ +   V  VLLWASF+L D
Sbjct: 187 GTPPTPSSIWGSPRLQVLALKWTPITIIVVVAAVLLWASFILTD 229

The following BLAST results are available for this feature:

BLAST of Carg22097 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023541413.1	7.7e-57	93.33	25.3 kDa vesicle transport protein [Cucurbita pepo subsp. pepo]	[more]
XP_022944814.1	1.2e-54	92.50	25.3 kDa vesicle transport protein isoform X1 [Cucurbita moschata]	[more]
XP_022968542.1	2.7e-54	91.67	25.3 kDa vesicle transport protein isoform X1 [Cucurbita maxima]	[more]
XP_008439222.1	6.6e-40	73.98	PREDICTED: 25.3 kDa vesicle transport protein isoform X1 [Cucumis melo]	[more]
XP_016898989.1	6.6e-40	73.98	PREDICTED: 25.3 kDa vesicle transport protein isoform X2 [Cucumis melo]	[more]

BLAST of Carg22097 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52270.1	9.8e-06	57.78	SNARE-like superfamily protein	[more]
AT1G11890.1	1.3e-05	31.96	Synaptobrevin family protein	[more]

BLAST of Carg22097 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q94AU2\|SEC22_ARATH	2.3e-04	31.96	25.3 kDa vesicle transport protein OS=Arabidopsis thaliana OX=3702 GN=SEC22 PE=2...	[more]

BLAST of Carg22097 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DSM7\|A0A1S4DSM7_CUCME	4.3e-40	73.98	25.3 kDa vesicle transport protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
tr\|A0A1S3AYX3\|A0A1S3AYX3_CUCME	4.3e-40	73.98	25.3 kDa vesicle transport protein isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
tr\|A0A0A0LBE2\|A0A0A0LBE2_CUCSA	4.1e-38	72.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182070 PE=3 SV=1	[more]
tr\|A0A1S4DTG2\|A0A1S4DTG2_CUCME	2.6e-21	78.08	25.3 kDa vesicle transport protein isoform X3 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
tr\|A0A2I4F9N3\|A0A2I4F9N3_9ROSI	1.7e-15	52.88	25.3 kDa vesicle transport protein OS=Juglans regia OX=51240 GN=LOC108996789 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22097-RA	Carg22097-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR21136:SF97	SNARE-LIKE SUPERFAMILY PROTEIN	coord: 4..98
None	No IPR available	PANTHER	PTHR21136	SNARE PROTEINS	coord: 4..98

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22097	Cla006182	Watermelon (97103) v1	carwmB0736
Carg22097	Csa3G182070	Cucumber (Chinese Long) v2	carcuB0754
Carg22097	CSPI03G16900	Wild cucumber (PI 183967)	carcpiB0771
Carg22097	Cucsa.107760	Cucumber (Gy14) v1	carcgyB0828
Carg22097	CmaCh18G012440	Cucurbita maxima (Rimu)	carcmaB1032
Carg22097	CmoCh18G012670	Cucurbita moschata (Rifu)	carcmoB1003
Carg22097	Cp4.1LG09g00880	Cucurbita pepo (Zucchini)	carcpeB1038
Carg22097	MELO3C031642.2	Melon (DHL92) v3.6.1	carmedB0743
Carg22097	CsaV3_3G017070	Cucumber (Chinese Long) v3	carcucB0774
Carg22097	Cla97C05G090060	Watermelon (97103) v2	carwmbB0772
Carg22097	Bhi01G000964	Wax gourd	carwgoB0871

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22097	Silver-seed gourd	carcarB594
Carg22097	Cucumber (Gy14) v2	carcgybB0733
Carg22097	Cucurbita maxima (Rimu)	carcmaB1031
Carg22097	Cucurbita moschata (Rifu)	carcmoB1002
Carg22097	Cucurbita pepo (Zucchini)	carcpeB1039
Carg22097	Bottle gourd (USVL1VR-Ls)	carlsiB675
Carg22097	Melon (DHL92) v3.5.1	carmeB0732
Carg22097	Watermelon (Charleston Gray)	carwcgB0715
Carg22097	Watermelon (97103) v2	carwmbB0773
Carg22097	Wax gourd	carwgoB0872