Carg22097-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22097-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	25.3 kDa vesicle transport protein
Location	Cucurbita_argyrosperma_scaffold_229 : 90402 .. 90925 (-)
Sequence length	372

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGCAGATAATATTATTAGCAATATTAGGAAGCGATACATTGATACAAGAACACAAGCTAATCTATACAAGCTCAATGATAACCGTGGTCAAATTGATCTAGACATGGTTACTTGTTCGTTCTCTGAAATTTTTGAAAGAAAGAGAAAGATAACGGGTAATTGTTCTTAATTTTTAAGCCATAATAATTCAAATAAGTTTTTGATTAACCGAGCTTTTGTAGATACAGTGGAAAGATCAATTTGTAATGCAAATTCCTCTTCCATTTGGAGCTTTTCAATTCTCAAGGTAATTTAGTTGATTTTCTTTCATTTTCTTTCATTTTCTTGGCAACCAAACAAAGGGTAAGCATTAATTTTTGTTTGTATGGACAGGAAATTGGGTTGAAATGGACGCCAGTGGTTGTAACTTTTGGTGTAGTGCTTGTACTTTTATGGGCTTCCTTTCTTCTCTTCGACATCTCATTATCTCATCATAATCAATTTGTAATTCTATATAACAATAGAAAATTGTTTCACTAA

mRNA sequence

ATGTATGCAGATAATATTATTAGCAATATTAGGAAGCGATACATTGATACAAGAACACAAGCTAATCTATACAAGCTCAATGATAACCGTGGTCAAATTGATCTAGACATGGTTACTTGTTCGTTCTCTGAAATTTTTGAAAGAAAGAGAAAGATAACGGATACAGTGGAAAGATCAATTTGTAATGCAAATTCCTCTTCCATTTGGAGCTTTTCAATTCTCAAGGAAATTGGGTTGAAATGGACGCCAGTGGTTGTAACTTTTGGTGTAGTGCTTGTACTTTTATGGGCTTCCTTTCTTCTCTTCGACATCTCATTATCTCATCATAATCAATTTGTAATTCTATATAACAATAGAAAATTGTTTCACTAA

Coding sequence (CDS)

ATGTATGCAGATAATATTATTAGCAATATTAGGAAGCGATACATTGATACAAGAACACAAGCTAATCTATACAAGCTCAATGATAACCGTGGTCAAATTGATCTAGACATGGTTACTTGTTCGTTCTCTGAAATTTTTGAAAGAAAGAGAAAGATAACGGATACAGTGGAAAGATCAATTTGTAATGCAAATTCCTCTTCCATTTGGAGCTTTTCAATTCTCAAGGAAATTGGGTTGAAATGGACGCCAGTGGTTGTAACTTTTGGTGTAGTGCTTGTACTTTTATGGGCTTCCTTTCTTCTCTTCGACATCTCATTATCTCATCATAATCAATTTGTAATTCTATATAACAATAGAAAATTGTTTCACTAA

Protein sequence

MYADNIISNIRKRYIDTRTQANLYKLNDNRGQIDLDMVTCSFSEIFERKRKITDTVERSICNANSSSIWSFSILKEIGLKWTPVVVTFGVVLVLLWASFLLFDISLSHHNQFVILYNNRKLFH

Homology

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BLAST of Carg22097-RA vs. NCBI nr
Match: XP_023541413.1 (25.3 kDa vesicle transport protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 229.2 bits (583), Expect = 7.7e-57
Identity = 112/120 (93.33%), Postives = 118/120 (98.33%), Query Frame = 0


Query: 4   DNIISNIRKRYIDTRTQANLYKLNDNRGQIDLDMVTCSFSEIFERKRKITDTVERSICNA 63
           DNIISNIRKRYIDTRTQANLYKLNDNRGQIDLDM+TCSFSEIFER+RKITDT+ERSICNA
Sbjct: 130 DNIISNIRKRYIDTRTQANLYKLNDNRGQIDLDMITCSFSEIFERRRKITDTMERSICNA 189

Query: 64  NSSSIWSFSILKEIGLKWTPVVVTFGVVLVLLWASFLLFDISLSHHNQFVILYNNRKLFH 123
           NSSSIWS+S LKEIGLKWTP+VVTFG VLVLLWASFLLFDISL+HHNQFVILYNNRKLFH
Sbjct: 190 NSSSIWSYSFLKEIGLKWTPMVVTFGAVLVLLWASFLLFDISLAHHNQFVILYNNRKLFH 249

[Close]

BLAST of Carg22097-RA vs. NCBI nr
Match: XP_022944814.1 (25.3 kDa vesicle transport protein isoform X1 [Cucurbita moschata])

HSP 1 Score: 221.9 bits (564), Expect = 1.2e-54
Identity = 111/120 (92.50%), Postives = 113/120 (94.17%), Query Frame = 0


Query: 4   DNIISNIRKRYIDTRTQANLYKLNDNRGQIDLDMVTCSFSEIFERKRKITDTVERSICNA 63
           DNII NIRKRYIDTRTQ NLYKLND RGQ DLDMVTCSF EIFER+RKITD  ERSICNA
Sbjct: 161 DNIIINIRKRYIDTRTQVNLYKLNDGRGQTDLDMVTCSFFEIFERRRKITDRAERSICNA 220

Query: 64  NSSSIWSFSILKEIGLKWTPVVVTFGVVLVLLWASFLLFDISLSHHNQFVILYNNRKLFH 123
           NSSSIWSFSI+KEIGLKWTPVVVTFGVVLVLLWASFLLFDISLSHHNQFVILYNNRKLFH
Sbjct: 221 NSSSIWSFSIVKEIGLKWTPVVVTFGVVLVLLWASFLLFDISLSHHNQFVILYNNRKLFH 280

[Close]

BLAST of Carg22097-RA vs. NCBI nr
Match: XP_022968542.1 (25.3 kDa vesicle transport protein isoform X1 [Cucurbita maxima])

HSP 1 Score: 220.7 bits (561), Expect = 2.7e-54
Identity = 110/120 (91.67%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 4   DNIISNIRKRYIDTRTQANLYKLNDNRGQIDLDMVTCSFSEIFERKRKITDTVERSICNA 63
           DNIISNIRKRYIDTRTQ NLYKLND+R Q DLD+VTCS SEIFER+RKITD VERSICNA
Sbjct: 118 DNIISNIRKRYIDTRTQVNLYKLNDSRSQTDLDIVTCSISEIFERRRKITDMVERSICNA 177

Query: 64  NSSSIWSFSILKEIGLKWTPVVVTFGVVLVLLWASFLLFDISLSHHNQFVILYNNRKLFH 123
           NSSSIWSFS +KEIGLKWTPVVVTFGVVLVLLWASFLLFDISLSHHNQFVILYNNRKLFH
Sbjct: 178 NSSSIWSFSFVKEIGLKWTPVVVTFGVVLVLLWASFLLFDISLSHHNQFVILYNNRKLFH 237

[Close]

BLAST of Carg22097-RA vs. NCBI nr
Match: XP_008439222.1 (PREDICTED: 25.3 kDa vesicle transport protein isoform X1 [Cucumis melo])

HSP 1 Score: 172.9 bits (437), Expect = 6.6e-40
Identity = 91/123 (73.98%), Postives = 103/123 (83.74%), Query Frame = 0


Query: 4   DNIISNIRKRYIDTRTQANLYKLNDNRGQIDLDMVTCSFSEIFERKRKITDTVERSICNA 63
           D+IISN+RK+YIDTRTQ NL KLN NR Q D D+++CSFSEI ER+RK+ D  ERS CN 
Sbjct: 118 DSIISNVRKQYIDTRTQVNLCKLNANRRQPDPDILSCSFSEILERRRKL-DIEERSRCNT 177

Query: 64  N----SSSIWSFSILKEIGLKWTPVVVTFGVVLVLLWASFLLFDISLSHHNQFVILYNNR 123
           N    SSSIW    L+EIGLKWTP+VVTFGVVL++LWASFLLFDISLSHHNQFVILYNNR
Sbjct: 178 NSQGTSSSIWGSPYLEEIGLKWTPMVVTFGVVLIVLWASFLLFDISLSHHNQFVILYNNR 237

[Close]

BLAST of Carg22097-RA vs. NCBI nr
Match: XP_016898989.1 (PREDICTED: 25.3 kDa vesicle transport protein isoform X2 [Cucumis melo])

HSP 1 Score: 172.9 bits (437), Expect = 6.6e-40
Identity = 91/123 (73.98%), Postives = 103/123 (83.74%), Query Frame = 0


Query: 4   DNIISNIRKRYIDTRTQANLYKLNDNRGQIDLDMVTCSFSEIFERKRKITDTVERSICNA 63
           D+IISN+RK+YIDTRTQ NL KLN NR Q D D+++CSFSEI ER+RK+ D  ERS CN 
Sbjct: 75  DSIISNVRKQYIDTRTQVNLCKLNANRRQPDPDILSCSFSEILERRRKL-DIEERSRCNT 134

Query: 64  N----SSSIWSFSILKEIGLKWTPVVVTFGVVLVLLWASFLLFDISLSHHNQFVILYNNR 123
           N    SSSIW    L+EIGLKWTP+VVTFGVVL++LWASFLLFDISLSHHNQFVILYNNR
Sbjct: 135 NSQGTSSSIWGSPYLEEIGLKWTPMVVTFGVVLIVLWASFLLFDISLSHHNQFVILYNNR 194

[Close]

BLAST of Carg22097-RA vs. TAIR10
Match: AT5G52270.1 (SNARE-like superfamily protein)

HSP 1 Score: 47.0 bits (110), Expect = 9.8e-06
Identity = 26/45 (57.78%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 6   IISNIRKRYIDTRTQANLYKLNDNRGQIDLDMVTCSFSEIFERKR 51
           II  IRK+YIDTRTQANL KLN  R Q +LD+VT   ++I +R++
Sbjct: 122 IIGRIRKQYIDTRTQANLSKLNALRKQ-ELDVVTEHLNDIIQRQQ 165

[Close]

BLAST of Carg22097-RA vs. TAIR10
Match: AT1G11890.1 (Synaptobrevin family protein)

HSP 1 Score: 46.6 bits (109), Expect = 1.3e-05
Identity = 31/97 (31.96%), Postives = 47/97 (48.45%), Query Frame = 0


Query: 4   DNIISNIRKRYIDTRTQANLYKLNDNRGQIDLDMVTCSFSEIFERKRKITDTVERSICNA 63
           D  I   +K Y DTRTQ N+ KLND   ++   ++T +  E+     K+    E S    
Sbjct: 117 DTFIQKTKKLYQDTRTQRNIAKLNDELYEVH-QIMTRNVQEVLGVGEKLDQVSEMSSRLT 176

Query: 64  NSSSIWSFSI----LKEIGLKWTPVVVTFGVVLVLLW 97
           + S I++        + +  KW PV + FGVV +L W
Sbjct: 177 SESRIYADKAKDLNRQALIRKWAPVAIVFGVVFLLFW 212

[Close]

BLAST of Carg22097-RA vs. Swiss-Prot
Match: sp|Q94AU2|SEC22_ARATH (25.3 kDa vesicle transport protein OS=Arabidopsis thaliana OX=3702 GN=SEC22 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.3e-04
Identity = 31/97 (31.96%), Postives = 47/97 (48.45%), Query Frame = 0


Query: 4   DNIISNIRKRYIDTRTQANLYKLNDNRGQIDLDMVTCSFSEIFERKRKITDTVERSICNA 63
           D  I   +K Y DTRTQ N+ KLND   ++   ++T +  E+     K+    E S    
Sbjct: 117 DTFIQKTKKLYQDTRTQRNIAKLNDELYEVH-QIMTRNVQEVLGVGEKLDQVSEMSSRLT 176

Query: 64  NSSSIWSFSI----LKEIGLKWTPVVVTFGVVLVLLW 97
           + S I++        + +  KW PV + FGVV +L W
Sbjct: 177 SESRIYADKAKDLNRQALIRKWAPVAIVFGVVFLLFW 212

[Close]

BLAST of Carg22097-RA vs. TrEMBL
Match: tr|A0A1S4DSM7|A0A1S4DSM7_CUCME (25.3 kDa vesicle transport protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484073 PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 4.3e-40
Identity = 91/123 (73.98%), Postives = 103/123 (83.74%), Query Frame = 0


Query: 4   DNIISNIRKRYIDTRTQANLYKLNDNRGQIDLDMVTCSFSEIFERKRKITDTVERSICNA 63
           D+IISN+RK+YIDTRTQ NL KLN NR Q D D+++CSFSEI ER+RK+ D  ERS CN 
Sbjct: 75  DSIISNVRKQYIDTRTQVNLCKLNANRRQPDPDILSCSFSEILERRRKL-DIEERSRCNT 134

Query: 64  N----SSSIWSFSILKEIGLKWTPVVVTFGVVLVLLWASFLLFDISLSHHNQFVILYNNR 123
           N    SSSIW    L+EIGLKWTP+VVTFGVVL++LWASFLLFDISLSHHNQFVILYNNR
Sbjct: 135 NSQGTSSSIWGSPYLEEIGLKWTPMVVTFGVVLIVLWASFLLFDISLSHHNQFVILYNNR 194

[Close]

BLAST of Carg22097-RA vs. TrEMBL
Match: tr|A0A1S3AYX3|A0A1S3AYX3_CUCME (25.3 kDa vesicle transport protein isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484073 PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 4.3e-40
Identity = 91/123 (73.98%), Postives = 103/123 (83.74%), Query Frame = 0


Query: 4   DNIISNIRKRYIDTRTQANLYKLNDNRGQIDLDMVTCSFSEIFERKRKITDTVERSICNA 63
           D+IISN+RK+YIDTRTQ NL KLN NR Q D D+++CSFSEI ER+RK+ D  ERS CN 
Sbjct: 118 DSIISNVRKQYIDTRTQVNLCKLNANRRQPDPDILSCSFSEILERRRKL-DIEERSRCNT 177

Query: 64  N----SSSIWSFSILKEIGLKWTPVVVTFGVVLVLLWASFLLFDISLSHHNQFVILYNNR 123
           N    SSSIW    L+EIGLKWTP+VVTFGVVL++LWASFLLFDISLSHHNQFVILYNNR
Sbjct: 178 NSQGTSSSIWGSPYLEEIGLKWTPMVVTFGVVLIVLWASFLLFDISLSHHNQFVILYNNR 237

[Close]

BLAST of Carg22097-RA vs. TrEMBL
Match: tr|A0A0A0LBE2|A0A0A0LBE2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182070 PE=3 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 4.1e-38
Identity = 90/125 (72.00%), Postives = 100/125 (80.00%), Query Frame = 0


Query: 4   DNIISNIRKRYIDTRTQANLYKLNDNRGQIDLDMVTCSFSEIFERKRKITDTVERSICN- 63
           D+IISN+RK+YIDTRTQANL KLN NR Q D D+ TCS SEI ER+RK  D VERS  N 
Sbjct: 118 DSIISNVRKQYIDTRTQANLSKLNANRRQPDPDISTCSLSEILERRRKF-DMVERSRSNN 177

Query: 64  -----ANSSSIWSFSILKEIGLKWTPVVVTFGVVLVLLWASFLLFDISLSHHNQFVILYN 123
                 NS SIW    L+EIG+KWTP+VVTFGVVL++LWASFLLFDISLSHHNQFVILYN
Sbjct: 178 NTNSEGNSCSIWGSPYLEEIGVKWTPMVVTFGVVLIVLWASFLLFDISLSHHNQFVILYN 237

[Close]

BLAST of Carg22097-RA vs. TrEMBL
Match: tr|A0A1S4DTG2|A0A1S4DTG2_CUCME (25.3 kDa vesicle transport protein isoform X3 OS=Cucumis melo OX=3656 GN=LOC103484073 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.6e-21
Identity = 57/73 (78.08%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 54  DTVERSICNAN----SSSIWSFSILKEIGLKWTPVVVTFGVVLVLLWASFLLFDISLSHH 113
           D  ERS CN N    SSSIW    L+EIGLKWTP+VVTFGVVL++LWASFLLFDISLSHH
Sbjct: 118 DIEERSRCNTNSQGTSSSIWGSPYLEEIGLKWTPMVVTFGVVLIVLWASFLLFDISLSHH 177

Query: 114 NQFVILYNNRKLF 123
           NQFVILYNNRKLF
Sbjct: 178 NQFVILYNNRKLF 190

[Close]

BLAST of Carg22097-RA vs. TrEMBL
Match: tr|A0A2I4F9N3|A0A2I4F9N3_9ROSI (25.3 kDa vesicle transport protein OS=Juglans regia OX=51240 GN=LOC108996789 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.7e-15
Identity = 55/104 (52.88%), Postives = 67/104 (64.42%), Query Frame = 0


Query: 4   DNIISNIRKRYIDTRTQANLYKLNDNRGQIDLDMVTCSFSEIFERKRKITDTVERSICNA 63
           D+II NIRKRYIDTRTQANL KL+ NR Q DLD+VT   SEI E  R+ +D +   I   
Sbjct: 127 DSIIGNIRKRYIDTRTQANLSKLSANRKQ-DLDIVTKHVSEILECSRQNSDQIPERILIM 186

Query: 64  NS----SSIWSFSILKEIGLKWTPVVVTFGVVLVLLWASFLLFD 104
            +    SSIW    L+ + LKWTP+ +   V  VLLWASF+L D
Sbjct: 187 GTPPTPSSIWGSPRLQVLALKWTPITIIVVVAAVLLWASFILTD 229

The following BLAST results are available for this feature:

BLAST of Carg22097-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023541413.1	7.7e-57	93.33	25.3 kDa vesicle transport protein [Cucurbita pepo subsp. pepo]	[more]
XP_022944814.1	1.2e-54	92.50	25.3 kDa vesicle transport protein isoform X1 [Cucurbita moschata]	[more]
XP_022968542.1	2.7e-54	91.67	25.3 kDa vesicle transport protein isoform X1 [Cucurbita maxima]	[more]
XP_008439222.1	6.6e-40	73.98	PREDICTED: 25.3 kDa vesicle transport protein isoform X1 [Cucumis melo]	[more]
XP_016898989.1	6.6e-40	73.98	PREDICTED: 25.3 kDa vesicle transport protein isoform X2 [Cucumis melo]	[more]

BLAST of Carg22097-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52270.1	9.8e-06	57.78	SNARE-like superfamily protein	[more]
AT1G11890.1	1.3e-05	31.96	Synaptobrevin family protein	[more]

BLAST of Carg22097-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q94AU2\|SEC22_ARATH	2.3e-04	31.96	25.3 kDa vesicle transport protein OS=Arabidopsis thaliana OX=3702 GN=SEC22 PE=2...	[more]

BLAST of Carg22097-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DSM7\|A0A1S4DSM7_CUCME	4.3e-40	73.98	25.3 kDa vesicle transport protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
tr\|A0A1S3AYX3\|A0A1S3AYX3_CUCME	4.3e-40	73.98	25.3 kDa vesicle transport protein isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
tr\|A0A0A0LBE2\|A0A0A0LBE2_CUCSA	4.1e-38	72.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182070 PE=3 SV=1	[more]
tr\|A0A1S4DTG2\|A0A1S4DTG2_CUCME	2.6e-21	78.08	25.3 kDa vesicle transport protein isoform X3 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
tr\|A0A2I4F9N3\|A0A2I4F9N3_9ROSI	1.7e-15	52.88	25.3 kDa vesicle transport protein OS=Juglans regia OX=51240 GN=LOC108996789 PE=...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg22097	Carg22097	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg22097-RA	Carg22097-RA-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg22097-RA.CDS.3	Carg22097-RA.CDS.3	CDS
Carg22097-RA.CDS.2	Carg22097-RA.CDS.2	CDS
Carg22097-RA.CDS.1	Carg22097-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg22097-RA.exon.3	Carg22097-RA.exon.3	exon
Carg22097-RA.exon.2	Carg22097-RA.exon.2	exon
Carg22097-RA.exon.1	Carg22097-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR21136:SF97	SNARE-LIKE SUPERFAMILY PROTEIN	coord: 4..98
None	No IPR available	PANTHER	PTHR21136	SNARE PROTEINS	coord: 4..98