Carg22090 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22090
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	C5a peptidase
Location	Cucurbita_argyrosperma_scaffold_229 : 73623 .. 74326 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTTCTTCTTCTTCGTCTTCTTCTCTGTGTTTTCTTTCCTCATAAACCCTAGCCATGGCGTCGCACGTGCAATTCAGCAAAACGGGGCCGTTTTGGACCGATGAAAAGCACGTGCACTTCTTGAATTCCATGGAAGCTTCTTTTGTCCGATCCATGTACGAAAATCTGCACCATCGCCGCCGTCTACGGTTGAACCGCCTCCTCCCGGACACTGCTGACTCAACCCTAGATTCGCATCAGAAGTACAGGAAAAACCACCATCCTACCGCCGGTGAGTTTAGGGTTAACGTCAAACAAAAGAGGACGATGATTATTTTCTATTATTTATTTATTTATTTAACTAAAAAAGGACCAATCAAACAGCGTCAAAACCATACCATAAAAGTGGGAATAGTGAATATTCTTTACGAAGATATTTATATAAATTATATATATATATGCTTGCATTTTCTTTTTTTGTTATTATTGCCTTTTTTAATTAAAAAAAAAAAAAAACTTTTGCCTGTGATCCAGGAGGTGGCAGAATGGACGGTAGATCTAGCAGGAGATCGAGGAGGATATCATCTCTACCGCCCATTTCAATTCAAGATCAGGTTAGTCAGAACTCCATATCAAACATTGCATTTCTTCTTTCTTTCTTTTTTCTCTTCCAATATTAGAAATTGTATATTAAATATATCCACACCATTTTTTGTTTTTTTTT

mRNA sequence

TTCTTCTTCTTCTTCGTCTTCTTCTCTGTGTTTTCTTTCCTCATAAACCCTAGCCATGGCGTCGCACGTGCAATTCAGCAAAACGGGGCCGTTTTGGACCGATGAAAAGCACGTGCACTTCTTGAATTCCATGGAAGCTTCTTTTGTCCGATCCATGTACGAAAATCTGCACCATCGCCGCCGTCTACGGTTGAACCGCCTCCTCCCGGACACTGCTGACTCAACCCTAGATTCGCATCAGAAGTACAGGAAAAACCACCATCCTACCGCCGGAGGTGGCAGAATGGACGGTAGATCTAGCAGGAGATCGAGGAGGATATCATCTCTACCGCCCATTTCAATTCAAGATCAGGTTAGTCAGAACTCCATATCAAACATTGCATTTCTTCTTTCTTTCTTTTTTCTCTTCCAATATTAGAAATTGTATATTAAATATATCCACACCATTTTTTGTTTTTTTTT

Coding sequence (CDS)

ATGGCGTCGCACGTGCAATTCAGCAAAACGGGGCCGTTTTGGACCGATGAAAAGCACGTGCACTTCTTGAATTCCATGGAAGCTTCTTTTGTCCGATCCATGTACGAAAATCTGCACCATCGCCGCCGTCTACGGTTGAACCGCCTCCTCCCGGACACTGCTGACTCAACCCTAGATTCGCATCAGAAGTACAGGAAAAACCACCATCCTACCGCCGGAGGTGGCAGAATGGACGGTAGATCTAGCAGGAGATCGAGGAGGATATCATCTCTACCGCCCATTTCAATTCAAGATCAGGTTAGTCAGAACTCCATATCAAACATTGCATTTCTTCTTTCTTTCTTTTTTCTCTTCCAATATTAG

Protein sequence

MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQVSQNSISNIAFLLSFFFLFQY

Homology

[Close]

BLAST of Carg22090 vs. NCBI nr
Match: XP_022945615.1 (uncharacterized protein LOC111449801 [Cucurbita moschata])

HSP 1 Score: 205.3 bits (521), Expect = 1.2e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDS 60
           MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDS
Sbjct: 1   MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDS 60

Query: 61  HQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV 101
           HQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV
Sbjct: 61  HQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV 100

[Close]

BLAST of Carg22090 vs. NCBI nr
Match: XP_023542542.1 (uncharacterized protein LOC111802424 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 205.3 bits (521), Expect = 1.2e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDS 60
           MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDS
Sbjct: 1   MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDS 60

Query: 61  HQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV 101
           HQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV
Sbjct: 61  HQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV 100

[Close]

BLAST of Carg22090 vs. NCBI nr
Match: XP_022968364.1 (uncharacterized protein LOC111467625 [Cucurbita maxima])

HSP 1 Score: 204.1 bits (518), Expect = 2.6e-49
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDS 60
           MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDS
Sbjct: 1   MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDS 60

Query: 61  HQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV 101
           HQKYRKNHHPTAGGGR+DGRSSRRSRRISSLPPISIQDQV
Sbjct: 61  HQKYRKNHHPTAGGGRLDGRSSRRSRRISSLPPISIQDQV 100

[Close]

BLAST of Carg22090 vs. NCBI nr
Match: XP_022984701.1 (uncharacterized protein LOC111482903 isoform X2 [Cucurbita maxima])

HSP 1 Score: 143.3 bits (360), Expect = 5.4e-31
Identity = 76/100 (76.00%), Postives = 84/100 (84.00%), Query Frame = 0


Query: 1   MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDS 60
           M SHVQFS+T PFWT+EKH+HFLNSMEASFVRSM++N +HRRRLRL+R L DTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60

Query: 61  HQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV 101
            QK RK H  +  G RMDGRSSRRSRRI SLP  SIQDQV
Sbjct: 61  PQKNRKKH--SISGTRMDGRSSRRSRRIPSLPHTSIQDQV 98

[Close]

BLAST of Carg22090 vs. NCBI nr
Match: XP_022984699.1 (uncharacterized protein LOC111482903 isoform X1 [Cucurbita maxima])

HSP 1 Score: 142.5 bits (358), Expect = 9.3e-31
Identity = 76/100 (76.00%), Postives = 84/100 (84.00%), Query Frame = 0


Query: 1   MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDS 60
           M SHVQFS+T PFWT+EKH+HFLNSMEASFVRSM++N +HRRRLRL+R L DTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60

Query: 61  HQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV 101
            QK RK H  +  G RMDGRSSRRSRRI SLP  SIQDQV
Sbjct: 61  PQKNRKKHSISV-GTRMDGRSSRRSRRIPSLPHTSIQDQV 99

[Close]

BLAST of Carg22090 vs. TrEMBL
Match: tr|A0A0A0L5V0|A0A0A0L5V0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G181960 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.0e-30
Identity = 71/100 (71.00%), Postives = 84/100 (84.00%), Query Frame = 0


Query: 1   MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDS 60
           M SHVQF++TGP WT+EKH+HFLNS+EASFVRSM++N  HRR LRL+RLLPDTADSTLDS
Sbjct: 1   MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRRGLRLDRLLPDTADSTLDS 60

Query: 61  HQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV 101
              + KN HPT+G  R++GRS+RRSRRISS P  S QDQV
Sbjct: 61  PHNHTKN-HPTSGSARINGRSTRRSRRISSPPYTSTQDQV 99

[Close]

BLAST of Carg22090 vs. TrEMBL
Match: tr|A0A1S3AYV4|A0A1S3AYV4_CUCME (uncharacterized protein LOC103484063 OS=Cucumis melo OX=3656 GN=LOC103484063 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.5e-16
Identity = 43/54 (79.63%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 1  MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTA 55
          M SHVQF++TGP WT+EKH+HFLNSMEASFVRSM++N  HRRRLRL+RLLPDTA
Sbjct: 1  MESHVQFTQTGPSWTNEKHMHFLNSMEASFVRSMFQNRAHRRRLRLDRLLPDTA 54

[Close]

BLAST of Carg22090 vs. TrEMBL
Match: tr|M5XL93|M5XL93_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G292300 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 7.3e-16
Identity = 59/102 (57.84%), Postives = 68/102 (66.67%), Query Frame = 0


Query: 1   MASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLD- 60
           M SHVQ  K    WTDEKHV FLNSMEASFVR+M+E   H R LRL+R LPDT+DSTLD 
Sbjct: 1   MQSHVQSGKKRS-WTDEKHVQFLNSMEASFVRAMFEKKDH-RLLRLDRYLPDTSDSTLDL 60

Query: 61  -SHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQV 101
            +  K +K       GGRMDG + +R RR SS P  + QDQV
Sbjct: 61  KTLNKTKKQ------GGRMDGGADKRLRRFSSQPFNASQDQV 94

[Close]

BLAST of Carg22090 vs. TrEMBL
Match: tr|V7C4V2|V7C4V2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_004G119400g PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.6e-15
Identity = 58/111 (52.25%), Postives = 70/111 (63.06%), Query Frame = 0


Query: 2   ASHVQFSKTGPFWTDEKHVHFLNSMEASFVRSMYENL----HHRRRLRLNRLLPDTADST 61
           A+HV  ++T PFWTDEKHVHFLN+MEASFVR+M EN       R  LRL+R LPD +DST
Sbjct: 4   AAHVPDTETPPFWTDEKHVHFLNTMEASFVRAMLENQGAANPTRHSLRLDRYLPDISDST 63

Query: 62  LD--SHQKYRKNHHPTAGGGRMDGRSSRRSRRISSLPPISIQDQVSQNSIS 107
           LD   H + R        G  M G + RRSRR SS P  S QDQV  + ++
Sbjct: 64  LDLKPHPRRRTRQLHAPAGDSM-GPTMRRSRRRSSQPYNSSQDQVVPHGVA 113

[Close]

BLAST of Carg22090 vs. TrEMBL
Match: tr|A0A2N9FLU5|A0A2N9FLU5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16035 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.8e-14
Identity = 51/95 (53.68%), Postives = 65/95 (68.42%), Query Frame = 0


Query: 14  WTDEKHVHFLNSMEASFVRSMYENLHHRRRLRLNRLLPDTADSTLDSHQKYRKNHHPTAG 73
           WT+EKHV FLN+MEASFVR+M+EN    + LRL+R LPD+++STLD  ++ RK H    G
Sbjct: 10  WTNEKHVRFLNTMEASFVRAMFENNDDDQILRLDRYLPDSSESTLDLKKQRRKKHVSQVG 69

Query: 74  G-------GRMDGRSSRRSRRISSLPP-ISIQDQV 101
           G        RMD R+ RR+RR+SS  P I  QDQV
Sbjct: 70  GTGNMVARARMDSRADRRTRRLSSSQPCIPSQDQV 104

The following BLAST results are available for this feature:

BLAST of Carg22090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022945615.1	1.2e-49	100.00	uncharacterized protein LOC111449801 [Cucurbita moschata]	[more]
XP_023542542.1	1.2e-49	100.00	uncharacterized protein LOC111802424 [Cucurbita pepo subsp. pepo]	[more]
XP_022968364.1	2.6e-49	99.00	uncharacterized protein LOC111467625 [Cucurbita maxima]	[more]
XP_022984701.1	5.4e-31	76.00	uncharacterized protein LOC111482903 isoform X2 [Cucurbita maxima]	[more]
XP_022984699.1	9.3e-31	76.00	uncharacterized protein LOC111482903 isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg22090 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg22090 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg22090 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L5V0\|A0A0A0L5V0_CUCSA	4.0e-30	71.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G181960 PE=4 SV=1	[more]
tr\|A0A1S3AYV4\|A0A1S3AYV4_CUCME	2.5e-16	79.63	uncharacterized protein LOC103484063 OS=Cucumis melo OX=3656 GN=LOC103484063 PE=...	[more]
tr\|M5XL93\|M5XL93_PRUPE	7.3e-16	57.84	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G292300 PE=4 SV=1	[more]
tr\|V7C4V2\|V7C4V2_PHAVU	1.6e-15	52.25	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_004G119400g PE=4 ...	[more]
tr\|A0A2N9FLU5\|A0A2N9FLU5_FAGSY	1.8e-14	53.68	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16035 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22090-RA	Carg22090-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..93
None	No IPR available	PANTHER	PTHR33676:SF2	SUBFAMILY NOT NAMED	coord: 4..104
None	No IPR available	PANTHER	PTHR33676	FAMILY NOT NAMED	coord: 4..104

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22090	Cla006193	Watermelon (97103) v1	carwmB0736
Carg22090	Csa3G181960	Cucumber (Chinese Long) v2	carcuB0754
Carg22090	MELO3C006894	Melon (DHL92) v3.5.1	carmeB0732
Carg22090	ClCG05G007940	Watermelon (Charleston Gray)	carwcgB0715
Carg22090	CSPI03G16800	Wild cucumber (PI 183967)	carcpiB0771
Carg22090	Cucsa.107630	Cucumber (Gy14) v1	carcgyB0828
Carg22090	CmaCh16G001350	Cucurbita maxima (Rimu)	carcmaB1031
Carg22090	CmoCh18G012610	Cucurbita moschata (Rifu)	carcmoB1003
Carg22090	CmoCh16G001400	Cucurbita moschata (Rifu)	carcmoB1002
Carg22090	Lsi05G012430	Bottle gourd (USVL1VR-Ls)	carlsiB675
Carg22090	Cp4.1LG09g00830	Cucurbita pepo (Zucchini)	carcpeB1038
Carg22090	CsGy3G016890	Cucumber (Gy14) v2	carcgybB0733
Carg22090	MELO3C006894.2	Melon (DHL92) v3.6.1	carmedB0743
Carg22090	CsaV3_3G016970	Cucumber (Chinese Long) v3	carcucB0774
Carg22090	Cla97C05G089940	Watermelon (97103) v2	carwmbB0772
Carg22090	Bhi01G000976	Wax gourd	carwgoB0871

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg22090	Carg15141	Silver-seed gourd	carcarB594

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22090	Cucurbita maxima (Rimu)	carcmaB1032
Carg22090	Cucurbita pepo (Zucchini)	carcpeB1039
Carg22090	Watermelon (97103) v2	carwmbB0773
Carg22090	Wax gourd	carwgoB0872