Carg21904 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg21904
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Centromere protein v
Location	Cucurbita_argyrosperma_scaffold_111 : 357556 .. 360855 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTCAACGTAATCACTGCTTATAGATGTTAGAATTAAAAACCAAATCGACGGAAGTACTTTCTGTTTAAATGCTTCAATGATTTGTAACAGGGTTAGATTTGACTATATAAGAAGGAGGAGACTCTCCAAATGGTTTAGGGTTCGATTTGAGAATTTAACAACTCCTTGACGTTTACCGAGCTATTCAATTAACATTGTGACAGGATCCCCCTGTTTAAGGTATGTTCATATTCAAAACTATCATCTCTGCATTCTTTTAGTGTAATATATTACCAGTAGGTGCTCATGTTCGAAAGCTTTGATATGTGATTCCGTTTATGTTTGTTAAATTCTGTTCTTGCTGGCCTTTGATTTTGAATCTGTTGATTTAAGCTTCATCCAATTTGGGATGAGAAAGAAAGTTACTTACATTGTTGGTGGAGTAGTAATTAGGAGGGTTCCTCTTAGACAATCGAAGGCCACCTTGAGAAAAGGCCCTGAGGAGCATATAATTGGATTGACATTCTTTCCTTTCTTATGTGATATTGTAGTAACTTGATAGTCACATCCCAGTTTTTGCTTTGAGTATTTCTTCTACGCATACCAGTTAAGGTTGTATGTAGCCTTATGAAGGAGTTTTTGATAGAAGGAATGTGGTTCTACTTTTCTTCCAAGTTTGATGCGAGATCCTCATCCGTTGGAGAGAAGAACGAAACACTTTTTATAAGGGTGTGGAAATCTCTCCCTAGCAGACATGTTTTAAAAACTTTGAGAGGAAGCGTGGAAGGGAAAACCCAAAGAGGATAATATCTGCTAGCAGTGGGCTTGGGTCGTTACAAATGGTATTAGAGCTAGAAACTAAGCGATGTGCTAGCGAGGAGGCTGAACCCCGAAGGGGGGTGGACACGAGGCGATGTGCCAGCAAGGATGCTGGCCCCAAAGGGGGTGGATTGGGGAGGTCCCACATCTGTTGGAGAAGGGAACGAGTGCCAACAAGGATGCTGCGCCCCAAAGGGGATGGATTGTGAGATCCCATGTCGGTTGGGGAGGAGAACAAAACAATCTTATAAGGGTGTGGAAACTTCTCCCTAGCAGACGTGTTTAAAAAATTTTAGAGAGGAAGCCTGGAAGAGAAAGCCAAACAGGACAATATTGTCTGGTAGTGAAGTTGGGCCGTTACATTTGATCTCTAGTTTGGCCTCGACGAAGATAGATTAAAAAGAATCTTTTCACAAATTGGTTATTTTGAAGCTCAACTCTAATCATTCCAAGCTTGCGTTCTACTTTATCCAAGCTATTTTGGGGCGGTAAGTGCCCTTCCATGGAAAACTGGCTTCTGAAAGTGTTTTTTTAGTTAGCAGATCCAACGCAAAGGTTAGAACTTTATGAAAAGAGTGATAATAGGGTCTTGCGTGCCTCCCTGAGATTAGAAAGAAACAATAGGATCTTCAATGATGTCTGAACTATTGGCTAAATGTACAATACAGTAGATGACCTCAAATTAGAGTACCATTCATACGAATTTCAGTAATTATGTCAGCTTTTCAATTAACTTAGATTGGAAGCAATTTTTTAACGGCCCAAGCCCAAGCCCAAGCCCACCGCTAGCAGAAGTTGTCATCTTTGGGCTTTCCCTTCTAGGCTTCCCCTCAAGATTTTAAAACGCGTCTGTTAGGGAGAGGTTGATTTTAAAACGCATCTGTTAGGGAGAGGTTGATTTTAAAACGCGTCTGCTAGGGAGAGGTTGATTTTAAAACGCGTCTACTAGGGAGAGGTTTCCACACTCTTATAAAGAATGCTTCGTTCTCCTCTCCAACCGATGTGAGATCTCACAATTCACCCCTTCAGGGCCTAGCGTCCTCGCCGACACTCGTTCCTGTAATAGCCCAAGCCCACTGCTAGCAGATATTGTCCTCTTTGGGCTTTCCCTTCCAGGTTTCCTCTCAAGGTTTTTAAACGTGTATGATAGGAAGAGGTTTCCACACCCTTATAAAGAATGTTTCATTCCCCTCTCCAACCGATGTGGAATCTCGCAATCCACCCCCTTTGGAGCCTAGCTTCGAAGCCCAGCATCCTCGTTGGCACTTGTTCCTGTAATAGCCCAAGCCCACCGCTAGTAGATATTGTCCGCTTTGGCCTATTACGTATCGCCGTCAATCTCACGGTTTTAAAACGCATCTACTATGGAGAGGTTTCCACACCCTTATAAGGAAGGTTTCGTTTCCCTCTCCAACCAATGTGGGATCTCACAGTTCCTTTCTCCAATCGATGTGGAATCTCACAATCCACCCCTACACTTAAGTTACAAGGAATTTGTCTCTCCTTTGGCGTTTTGGCTGTATTCTATTTTTCTCGATGAAACATTTGTCTCTTGTCAAAAAGAAAAGAATCGAAAAATAGTAAGAGAATACAATTTGATTCTAGAACAATTTTCCTTTTCGAATTAGTTAGTTTAGCAGGGCTAGTTTACAATAAGATGAAGATTTAAATCCTATGACCATTTTTTATCAGGAAAGCGAACAATCATTCACTAAAAGATTGAAAGGGGTGATTTCTTCTATAATGGACTCCGAGTTAGTTGTGCATAACGGTGGATGCCACTGCAAGAACGTAAGATGGCGAGTCGAAGCACCTACTAGTGTCGTAGCTTGGGATTGTAACTGTTCTGATTGCTTCATGAGGGCCAATACACATTTTATTGTGCCTTTGGAACGGTTCAAACTTTTAGGAGATTCCAAGAACTTTATTTCAACCTATACGTTTGGTACTCACACTGCAAAACATACCTTCTGTAAAGTTTGTGGCATTACCTCATTTTACCATCCACGCTCAAACCCAGATGGAGTTGCCATTACTTTCAAATGTGTTGATCCTGGAACATTGACCCATGTTGAGATTAGGCAGTTTGATGGGAGCAACTGGGAGGCCTCATATGGTCATACAGGCATTGCTTCATTTTCTAAGCTGTCTTAGAACATTAGTTAATATGCATTTTGATATTTGCTATAATCTATGTTTGTGACTGTTGACACGAACTTTGTTTAGACTTGTATTTGTATCAAATGTATATTCGTATTCCCGAGTCTCGAGTCTTGTATGCAGGCACACGATATTTCTACCGAGTCTATCTCTTCTTGGACTGTTCTGTTATCCCTTTTGACCACTGTATTTTCCTCTTTTGCCACACAATGAAATCTGAGACTCGAACCAAAATAAAAAATGTGTTGTTTGTTTGGTTTAAACCTATTCTAGATTGTTAGGGTCAATTTAGGTTAAATTACAAGTTTAGTTCTAAACTTTGAATTTGGTTCTGAAC

mRNA sequence

ATGATTTCAACATCCAACGCAAAGGAAAGCGAACAATCATTCACTAAAAGATTGAAAGGGGTGATTTCTTCTATAATGGACTCCGAGTTAGTTGTGCATAACGGTGGATGCCACTGCAAGAACGTAAGATGGCGAGTCGAAGCACCTACTAGTGTCGTAGCTTGGGATTGTAACTGTTCTGATTGCTTCATGAGGGCCAATACACATTTTATTGTGCCTTTGGAACGGTTCAAACTTTTAGGAGATTCCAAGAACTTTATTTCAACCTATACGTTTGGTACTCACACTGCAAAACATACCTTCTGTAAAGTTTGTGGCATTACCTCATTTTACCATCCACGCTCAAACCCAGATGGAGTTGCCATTACTTTCAAATGTGTTGATCCTGGAACATTGACCCATGTTGAGATTAGGCAGTTTGATGGGAGCAACTGGGAGGCCTCATATGGTCATACAGGCATTGCTTCATTTTCTAAGCTGTCTTAGAACATTAGTTAATATGCATTTTGATATTTGCTATAATCTATGTTTGTGACTGTTGACACGAACTTTGTTTAGACTTGTATTTGTATCAAATGTATATTCGTATTCCCGAGTCTCGAGTCTTGTATGCAGGCACACGATATTTCTACCGAGTCTATCTCTTCTTGGACTGTTCTGTTATCCCTTTTGACCACTGTATTTTCCTCTTTTGCCACACAATGAAATCTGAGACTCGAACCAAAATAAAAAATGTGTTGTTTGTTTGGTTTAAACCTATTCTAGATTGTTAGGGTCAATTTAGGTTAAATTACAAGTTTAGTTCTAAACTTTGAATTTGGTTCTGAAC

Coding sequence (CDS)

ATGATTTCAACATCCAACGCAAAGGAAAGCGAACAATCATTCACTAAAAGATTGAAAGGGGTGATTTCTTCTATAATGGACTCCGAGTTAGTTGTGCATAACGGTGGATGCCACTGCAAGAACGTAAGATGGCGAGTCGAAGCACCTACTAGTGTCGTAGCTTGGGATTGTAACTGTTCTGATTGCTTCATGAGGGCCAATACACATTTTATTGTGCCTTTGGAACGGTTCAAACTTTTAGGAGATTCCAAGAACTTTATTTCAACCTATACGTTTGGTACTCACACTGCAAAACATACCTTCTGTAAAGTTTGTGGCATTACCTCATTTTACCATCCACGCTCAAACCCAGATGGAGTTGCCATTACTTTCAAATGTGTTGATCCTGGAACATTGACCCATGTTGAGATTAGGCAGTTTGATGGGAGCAACTGGGAGGCCTCATATGGTCATACAGGCATTGCTTCATTTTCTAAGCTGTCTTAG

Protein sequence

MISTSNAKESEQSFTKRLKGVISSIMDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFKCVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS

Homology

[Close]

BLAST of Carg21904 vs. NCBI nr
Match: XP_022946627.1 (centromere protein V-like [Cucurbita moschata] >XP_022946628.1 centromere protein V-like [Cucurbita moschata] >XP_022946629.1 centromere protein V-like [Cucurbita moschata])

HSP 1 Score: 302.8 bits (774), Expect = 7.2e-79
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 26  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKN 85
           MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKN
Sbjct: 1   MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKN 60

Query: 86  FISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFKCVDPGTLTHVEIRQFDGSNW 145
           FISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFKCVDPGTLTHVEIRQFDGSNW
Sbjct: 61  FISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFKCVDPGTLTHVEIRQFDGSNW 120

Query: 146 EASYGHTGIASFSKLS 162
           EASYGHTGIASFSKLS
Sbjct: 121 EASYGHTGIASFSKLS 136

[Close]

BLAST of Carg21904 vs. NCBI nr
Match: XP_023546052.1 (centromere protein V [Cucurbita pepo subsp. pepo] >XP_023546053.1 centromere protein V [Cucurbita pepo subsp. pepo] >XP_023546054.1 centromere protein V [Cucurbita pepo subsp. pepo])

HSP 1 Score: 297.0 bits (759), Expect = 3.9e-77
Identity = 133/136 (97.79%), Postives = 133/136 (97.79%), Query Frame = 0


Query: 26  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKN 85
           MDSELV HNGGCHCK VRWRVEAP SVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKN
Sbjct: 1   MDSELVAHNGGCHCKKVRWRVEAPASVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKN 60

Query: 86  FISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFKCVDPGTLTHVEIRQFDGSNW 145
           FISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFKCVDPGTLTHVEIRQFDGSNW
Sbjct: 61  FISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFKCVDPGTLTHVEIRQFDGSNW 120

Query: 146 EASYGHTGIASFSKLS 162
           EASYGHTGIASFSKLS
Sbjct: 121 EASYGHTGIASFSKLS 136

[Close]

BLAST of Carg21904 vs. NCBI nr
Match: XP_022999779.1 (centromere protein V-like [Cucurbita maxima] >XP_022999780.1 centromere protein V-like [Cucurbita maxima] >XP_022999781.1 centromere protein V-like [Cucurbita maxima])

HSP 1 Score: 294.3 bits (752), Expect = 2.6e-76
Identity = 132/136 (97.06%), Postives = 133/136 (97.79%), Query Frame = 0


Query: 26  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKN 85
           MDSELVVHNGGCHCK VRWRVEAP SVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKN
Sbjct: 1   MDSELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKN 60

Query: 86  FISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFKCVDPGTLTHVEIRQFDGSNW 145
           FISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFKCVDPGTL +VEIRQFDGSNW
Sbjct: 61  FISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFKCVDPGTLAYVEIRQFDGSNW 120

Query: 146 EASYGHTGIASFSKLS 162
           EASYGHTGIASFSKLS
Sbjct: 121 EASYGHTGIASFSKLS 136

[Close]

BLAST of Carg21904 vs. NCBI nr
Match: XP_008464790.1 (PREDICTED: centromere protein V isoform X2 [Cucumis melo])

HSP 1 Score: 279.6 bits (714), Expect = 6.5e-72
Identity = 124/136 (91.18%), Postives = 129/136 (94.85%), Query Frame = 0


Query: 26  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKN 85
           M SELVVHNGGCHCK VRWRVEAP SVVAWDCNCS+CFMRANTHFIVPLERFKLLGDS N
Sbjct: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60

Query: 86  FISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFKCVDPGTLTHVEIRQFDGSNW 145
           F+STYTFG+HTAKHTFCK CGITSFY PRSNPDGVAITFKCVDPGTLTHVE+RQFDGSNW
Sbjct: 61  FVSTYTFGSHTAKHTFCKNCGITSFYRPRSNPDGVAITFKCVDPGTLTHVEVRQFDGSNW 120

Query: 146 EASYGHTGIASFSKLS 162
           EASY HTGIASFSKL+
Sbjct: 121 EASYDHTGIASFSKLN 136

[Close]

BLAST of Carg21904 vs. NCBI nr
Match: XP_008464791.1 (PREDICTED: centromere protein V isoform X3 [Cucumis melo])

HSP 1 Score: 279.6 bits (714), Expect = 6.5e-72
Identity = 124/136 (91.18%), Postives = 129/136 (94.85%), Query Frame = 0


Query: 26  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKN 85
           M SELVVHNGGCHCK VRWRVEAP SVVAWDCNCS+CFMRANTHFIVPLERFKLLGDS N
Sbjct: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60

Query: 86  FISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFKCVDPGTLTHVEIRQFDGSNW 145
           F+STYTFG+HTAKHTFCK CGITSFY PRSNPDGVAITFKCVDPGTLTHVE+RQFDGSNW
Sbjct: 61  FVSTYTFGSHTAKHTFCKNCGITSFYRPRSNPDGVAITFKCVDPGTLTHVEVRQFDGSNW 120

Query: 146 EASYGHTGIASFSKLS 162
           EASY HTGIASFSKL+
Sbjct: 121 EASYDHTGIASFSKLN 136

[Close]

BLAST of Carg21904 vs. TAIR10
Match: AT5G16940.1 (carbon-sulfur lyases)

HSP 1 Score: 225.3 bits (573), Expect = 2.6e-59
Identity = 95/134 (70.90%), Postives = 110/134 (82.09%), Query Frame = 0


Query: 26  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKN 85
           M+SEL+ H GGCHC  ++WRV+A  SV+AW CNCSDC MR N HFIVP   F+LL DSK+
Sbjct: 1   MESELIFHEGGCHCGKIKWRVKAARSVIAWSCNCSDCSMRGNVHFIVPSSNFELLDDSKD 60

Query: 86  FISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFKCVDPGTLTHVEIRQFDGSNW 145
           FI+TYTFGTHTAKHTFCKVCGITSFY PRSNPDGVA+T KCV  GTL H+E++ +DG NW
Sbjct: 61  FITTYTFGTHTAKHTFCKVCGITSFYIPRSNPDGVAVTVKCVKSGTLAHIEVKSYDGQNW 120

Query: 146 EASYGHTGIASFSK 160
           E S+  TGIASFSK
Sbjct: 121 EMSHKKTGIASFSK 134

[Close]

BLAST of Carg21904 vs. Swiss-Prot
Match: sp|Q9CXS4|CENPV_MOUSE (Centromere protein V OS=Mus musculus OX=10090 GN=Cenpv PE=1 SV=2)

HSP 1 Score: 145.2 bits (365), Expect = 6.3e-34
Identity = 73/153 (47.71%), Postives = 92/153 (60.13%), Query Frame = 0


Query: 8   KESEQSFTKRLKGVISSIMDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRAN 67
           K    SF    K ++ +     LV H GGCHC  VR+ V A   +  +DCNCS C  + N
Sbjct: 100 KRQRLSFEGAAKLLLDTFEYQGLVKHTGGCHCGAVRFEVWASADLHIFDCNCSICKKKQN 159

Query: 68  THFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFKCV 127
            HFIVP  RFKLL  +++ I+TYTF TH A+HTFCK CG+ SFY PRSNP G  I   C+
Sbjct: 160 RHFIVPASRFKLLKGAES-ITTYTFNTHKAQHTFCKRCGVQSFYTPRSNPGGFGIAPHCL 219

Query: 128 DPGTLTHVEIRQFDGSNWE-ASYGHTGIASFSK 160
           D GT+  V   +F+GS+WE A   H  I + SK
Sbjct: 220 DEGTVRSVVTEEFNGSDWERAMKEHKTIKNMSK 251

[Close]

BLAST of Carg21904 vs. Swiss-Prot
Match: sp|Q7Z7K6|CENPV_HUMAN (Centromere protein V OS=Homo sapiens OX=9606 GN=CENPV PE=1 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.4e-33
Identity = 75/161 (46.58%), Postives = 98/161 (60.87%), Query Frame = 0


Query: 8   KESEQSFTKRLK----GVISSIMDS----ELVVHNGGCHCKNVRWRVEAPTSVVAWDCNC 67
           +E  ++F KR K    G    ++D+     LV H GGCHC  VR+ V A   +  +DCNC
Sbjct: 115 RERWETFQKRQKLTSEGAAKLLLDTFEYQGLVKHTGGCHCGAVRFEVWASADLHIFDCNC 174

Query: 68  SDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDG 127
           S C  + N HFIVP  RFKLL  +++ I+TYTF TH A+HTFCK CG+ SFY PRSNP G
Sbjct: 175 SICKKKQNRHFIVPASRFKLLKGAEH-ITTYTFNTHKAQHTFCKRCGVQSFYTPRSNPGG 234

Query: 128 VAITFKCVDPGTLTHVEIRQFDGSNWE-ASYGHTGIASFSK 160
             I   C+D GT+  +   +F+GS+WE A   H  I + SK
Sbjct: 235 FGIAPHCLDEGTVRSMVTEEFNGSDWEKAMKEHKTIKNMSK 274

[Close]

BLAST of Carg21904 vs. TrEMBL
Match: tr|A0A1S3CMD8|A0A1S3CMD8_CUCME (centromere protein V isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502595 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 4.3e-72
Identity = 124/136 (91.18%), Postives = 129/136 (94.85%), Query Frame = 0


Query: 26  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKN 85
           M SELVVHNGGCHCK VRWRVEAP SVVAWDCNCS+CFMRANTHFIVPLERFKLLGDS N
Sbjct: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60

Query: 86  FISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFKCVDPGTLTHVEIRQFDGSNW 145
           F+STYTFG+HTAKHTFCK CGITSFY PRSNPDGVAITFKCVDPGTLTHVE+RQFDGSNW
Sbjct: 61  FVSTYTFGSHTAKHTFCKNCGITSFYRPRSNPDGVAITFKCVDPGTLTHVEVRQFDGSNW 120

Query: 146 EASYGHTGIASFSKLS 162
           EASY HTGIASFSKL+
Sbjct: 121 EASYDHTGIASFSKLN 136

[Close]

BLAST of Carg21904 vs. TrEMBL
Match: tr|A0A1S3CMF5|A0A1S3CMF5_CUCME (centromere protein V isoform X5 OS=Cucumis melo OX=3656 GN=LOC103502595 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 4.3e-72
Identity = 124/136 (91.18%), Postives = 129/136 (94.85%), Query Frame = 0


Query: 26  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKN 85
           M SELVVHNGGCHCK VRWRVEAP SVVAWDCNCS+CFMRANTHFIVPLERFKLLGDS N
Sbjct: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60

Query: 86  FISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFKCVDPGTLTHVEIRQFDGSNW 145
           F+STYTFG+HTAKHTFCK CGITSFY PRSNPDGVAITFKCVDPGTLTHVE+RQFDGSNW
Sbjct: 61  FVSTYTFGSHTAKHTFCKNCGITSFYRPRSNPDGVAITFKCVDPGTLTHVEVRQFDGSNW 120

Query: 146 EASYGHTGIASFSKLS 162
           EASY HTGIASFSKL+
Sbjct: 121 EASYDHTGIASFSKLN 136

[Close]

BLAST of Carg21904 vs. TrEMBL
Match: tr|A0A1S4E4W3|A0A1S4E4W3_CUCME (centromere protein V isoform X6 OS=Cucumis melo OX=3656 GN=LOC103502595 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 4.3e-72
Identity = 124/136 (91.18%), Postives = 129/136 (94.85%), Query Frame = 0


Query: 26  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKN 85
           M SELVVHNGGCHCK VRWRVEAP SVVAWDCNCS+CFMRANTHFIVPLERFKLLGDS N
Sbjct: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60

Query: 86  FISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFKCVDPGTLTHVEIRQFDGSNW 145
           F+STYTFG+HTAKHTFCK CGITSFY PRSNPDGVAITFKCVDPGTLTHVE+RQFDGSNW
Sbjct: 61  FVSTYTFGSHTAKHTFCKNCGITSFYRPRSNPDGVAITFKCVDPGTLTHVEVRQFDGSNW 120

Query: 146 EASYGHTGIASFSKLS 162
           EASY HTGIASFSKL+
Sbjct: 121 EASYDHTGIASFSKLN 136

[Close]

BLAST of Carg21904 vs. TrEMBL
Match: tr|A0A1S4E5L6|A0A1S4E5L6_CUCME (centromere protein V isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502595 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 4.3e-72
Identity = 124/136 (91.18%), Postives = 129/136 (94.85%), Query Frame = 0


Query: 26  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKN 85
           M SELVVHNGGCHCK VRWRVEAP SVVAWDCNCS+CFMRANTHFIVPLERFKLLGDS N
Sbjct: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60

Query: 86  FISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFKCVDPGTLTHVEIRQFDGSNW 145
           F+STYTFG+HTAKHTFCK CGITSFY PRSNPDGVAITFKCVDPGTLTHVE+RQFDGSNW
Sbjct: 61  FVSTYTFGSHTAKHTFCKNCGITSFYRPRSNPDGVAITFKCVDPGTLTHVEVRQFDGSNW 120

Query: 146 EASYGHTGIASFSKLS 162
           EASY HTGIASFSKL+
Sbjct: 121 EASYDHTGIASFSKLN 136

[Close]

BLAST of Carg21904 vs. TrEMBL
Match: tr|A0A1S3CNW6|A0A1S3CNW6_CUCME (centromere protein V isoform X4 OS=Cucumis melo OX=3656 GN=LOC103502595 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 4.3e-72
Identity = 124/136 (91.18%), Postives = 129/136 (94.85%), Query Frame = 0


Query: 26  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKN 85
           M SELVVHNGGCHCK VRWRVEAP SVVAWDCNCS+CFMRANTHFIVPLERFKLLGDS N
Sbjct: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60

Query: 86  FISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFKCVDPGTLTHVEIRQFDGSNW 145
           F+STYTFG+HTAKHTFCK CGITSFY PRSNPDGVAITFKCVDPGTLTHVE+RQFDGSNW
Sbjct: 61  FVSTYTFGSHTAKHTFCKNCGITSFYRPRSNPDGVAITFKCVDPGTLTHVEVRQFDGSNW 120

Query: 146 EASYGHTGIASFSKLS 162
           EASY HTGIASFSKL+
Sbjct: 121 EASYDHTGIASFSKLN 136

The following BLAST results are available for this feature:

BLAST of Carg21904 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946627.1	7.2e-79	100.00	centromere protein V-like [Cucurbita moschata] >XP_022946628.1 centromere protei...	[more]
XP_023546052.1	3.9e-77	97.79	centromere protein V [Cucurbita pepo subsp. pepo] >XP_023546053.1 centromere pro...	[more]
XP_022999779.1	2.6e-76	97.06	centromere protein V-like [Cucurbita maxima] >XP_022999780.1 centromere protein ...	[more]
XP_008464790.1	6.5e-72	91.18	PREDICTED: centromere protein V isoform X2 [Cucumis melo]	[more]
XP_008464791.1	6.5e-72	91.18	PREDICTED: centromere protein V isoform X3 [Cucumis melo]	[more]

BLAST of Carg21904 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G16940.1	2.6e-59	70.90	carbon-sulfur lyases	[more]

BLAST of Carg21904 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9CXS4\|CENPV_MOUSE	6.3e-34	47.71	Centromere protein V OS=Mus musculus OX=10090 GN=Cenpv PE=1 SV=2	[more]
sp\|Q7Z7K6\|CENPV_HUMAN	1.4e-33	46.58	Centromere protein V OS=Homo sapiens OX=9606 GN=CENPV PE=1 SV=1	[more]

BLAST of Carg21904 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CMD8\|A0A1S3CMD8_CUCME	4.3e-72	91.18	centromere protein V isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502595 PE=4 SV=...	[more]
tr\|A0A1S3CMF5\|A0A1S3CMF5_CUCME	4.3e-72	91.18	centromere protein V isoform X5 OS=Cucumis melo OX=3656 GN=LOC103502595 PE=4 SV=...	[more]
tr\|A0A1S4E4W3\|A0A1S4E4W3_CUCME	4.3e-72	91.18	centromere protein V isoform X6 OS=Cucumis melo OX=3656 GN=LOC103502595 PE=4 SV=...	[more]
tr\|A0A1S4E5L6\|A0A1S4E5L6_CUCME	4.3e-72	91.18	centromere protein V isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502595 PE=4 SV=...	[more]
tr\|A0A1S3CNW6\|A0A1S3CNW6_CUCME	4.3e-72	91.18	centromere protein V isoform X4 OS=Cucumis melo OX=3656 GN=LOC103502595 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016846	carbon-sulfur lyase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0008152	metabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR011057	Mss4-like_sf
IPR006913	GFA/CENP-V

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016846	carbon-sulfur lyase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21904-RA	Carg21904-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:2.170.150.70		coord: 33..148 e-value: 4.7E-27 score: 96.2
None	No IPR available	PANTHER	PTHR28620:SF1	GLUTATHIONE-DEPENDENT FORMALDEHYDE-ACTIVATING, GFA FAMILY PROTEIN	coord: 9..159
None	No IPR available	PANTHER	PTHR28620	FAMILY NOT NAMED	coord: 9..159
IPR006913	Glutathione-dependent formaldehyde-activating enzyme/centromere protein V	PFAM	PF04828	GFA	coord: 56..130 e-value: 2.6E-6 score: 27.6
IPR011057	Mss4-like superfamily	SUPERFAMILY	SSF51316	Mss4-like	coord: 26..145

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg21904	Cla021902	Watermelon (97103) v1	carwmB0199
Carg21904	Csa6G403060	Cucumber (Chinese Long) v2	carcuB0235
Carg21904	MELO3C026504	Melon (DHL92) v3.5.1	carmeB0216
Carg21904	ClCG08G009070	Watermelon (Charleston Gray)	carwcgB0205
Carg21904	CSPI06G21050	Wild cucumber (PI 183967)	carcpiB0241
Carg21904	Cucsa.005350	Cucumber (Gy14) v1	carcgyB0254
Carg21904	CmaCh05G009500	Cucurbita maxima (Rimu)	carcmaB0290
Carg21904	CmoCh05G009690	Cucurbita moschata (Rifu)	carcmoB0296
Carg21904	Lsi08G007570	Bottle gourd (USVL1VR-Ls)	carlsiB188
Carg21904	Cp4.1LG11g07600	Cucurbita pepo (Zucchini)	carcpeB0297
Carg21904	MELO3C026504.2	Melon (DHL92) v3.6.1	carmedB0221
Carg21904	CsaV3_6G036070	Cucumber (Chinese Long) v3	carcucB0239
Carg21904	Cla97C08G151870	Watermelon (97103) v2	carwmbB0214
Carg21904	Bhi04G000995	Wax gourd	carwgoB0264

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg21904	Wax gourd	carwgoB0262
Carg21904	Silver-seed gourd	carcarB159
Carg21904	Cucumber (Gy14) v2	carcgybB0224
Carg21904	Cucurbita maxima (Rimu)	carcmaB0289
Carg21904	Cucurbita moschata (Rifu)	carcmoB0294
Carg21904	Cucurbita pepo (Zucchini)	carcpeB0299