Cp4.1LG11g07600 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG11g07600
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Centromere protein V
Location	Cp4.1LG11 : 6135902 .. 6140458 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGGTTTAGCTTTATTCCACGTTTTAGGACATCTACTATTCAAATCTAAATGTTTTTAAATGGTTTGTGAGGACTATGACATGTATGATTGATCGTACCTTGCTCAATATGCATGTATATTACGCACGTATGTCTGATGTATGATTAAATTCTGTTTATGTCCCTAGAAGCATGATAAGAGGTTGGGACACATGTATTTCCTCATTGATATATGAACTAGATGTTATGTGCCCTAGAGGATACGTATAGCCTATTAATGAGTTTTAGCATATGTCTTATTTTTTCATGGTCCTTGAGCTACATTTAGGGTTCGTTATGACAACATGGAACAACTACGTCTATGTAGGAACGGTTGGGGTGCAATCCTTAGTCATATACTCGCCTGATTGGTGAGGATCAGCTTAGCATATAGGAATGCGACGTCACCCACTTAGGGCCCATGACACACTAGAGGGTACTATTGGGGGAGCTTTAGTTGTGCTTAGTGGGATGCCCGCTTTCACTATTCTAGCCCGAAGTGACGTAGGAATAGGGAGTTTGTTGAGTGCCATTAGAGGAGCATTCGCCTAACACTTAAGAATATGCATGTATGGAGATATAGGGAGATTAAGGGATCACCTATTGCGAGCAGTGATTCTTTTATATCTGTTAGACTTCCTAAAGCCCAGAACATACAAAGGCAGGCTAACTTAAGTGCACGAGATGTGATGACTTGATGGACCTTGGAAAGTAGAAAATGAGAGGTTAAGTGCACCCTGAAACCCGATGAACGAGTTACACCCTTGAAATAAGAGTAAATAGGATAGGAGAAGTTTTTATGAGAGCTTATAGGTAGGAGTTTACTGAGAATTTTTATACTCGTTCCTACTCTACTTTGTTTACATATGGAGCATAGATTACTATTGATGGCGATAGCGTACAAAATCGTGTGGCTGCAAGGACGACCGTTAGATCGAGTCTTTTTCCTCCTTTGTTATTTTAATGTTGTTTTCTTGAAATTTGTGTTATTTTGTAAACTATTTTGACGTGACTCATCAAATATGATTTTGTACTTTTAATTCTTTTTATACAACATTTACCGTTTATGTTTGACTTTAAATCCGCCCGTCCCACGTTTTACAAAATTAAAAAATTGTACAGCCTTGAAAAGCTAATTTAACCGCTCCAATTTTGGTCAACAAAGGTCGTTCGCTACAAAATTCGCTACGGGCCCTCAAAACCAACAATTACGTGTGGAGGATTGTTGGGAGGTAAGTCCACGTTCGTTAATCAAGGGATGATCACGGGTTTATAATCACCGCTGACAATTTTGTTAATACTTGCACTGAATGCCCGTAAGCTGTGGCCACCGGCTCCCTGATTCACAGTCGCGAACGCCCACAGGCCATAGGTGAGGTTCGTTTGCTCTTCTTTTCTTGCTCTTAGCTTTCTCTTAATCCAATTTTTTGATCCGCATACCTCCTCGTCCTCTGTCTCTGTGTAATTGTGATTGAACATTATAGATTTCTTTCTTTCTGATTTATCAATCCTTACCCCGCCCCCCTTTGGTTCGGATGCCCTAAAATGATTTCAACTTAATCACTGCTTATAGATGTTGGAATTATAAACCAAATCGACGGAAGTACTTTCTGTTTAAATGCTTCAATGATTTGTATCAGGGTTAGATTTGACTATATAAGAAGGAGGAGACTCTCCAAATGGTTTAGGGTTCGATTTGAGAATTTAACAACTCCTTGACGTTTACCGAGATATTCAATTAACATTGTGACAGGATCCCCCTGTTTAAGGTATGTTCATATTCAAAACTATCATCTCTGCATTCTTTTAGTGTAATATATTACCAGTAGGTGCTCATGTTCGAAAGCTTTGATATGTGATTCCGTTTATGTTTGTTAAATTCTGTTCTTGCTGGCCTTTGATTTTGAATCTGTTGATTTAAGCTTCATCCAATTTGGGATGAGAAAGAAAGTTACTTACATTGTTGGTGGAGTAGTAATTAGGAGGGTTCCTCTTGGACAATCGAAGGCCACCTTGAGAAAAGGCCCTGAGGAGCATATAATTGGATTGACATTCTTCCCTTTCATATGTGATATTGTAGTAACTTGATAGTCACATCCCAGTTTTTGCTTTGAGTATTTCTTCTACGCATACCAGTTAAGGTTGTATGTAGGCTTATGAAGGAGTTTTTGATAGAAGAATATAAGAATGTGGATCTACTTTTCTTCCAAGTTTGATGTGAGATCTCTCATCGGTTGGGGAGAAGAACGAAACACTTTTTTATAAATGTGTGGAAATCTCTCCCTATCTAAAAACTTTGAGAGGAAGCCTGGAAGGGAAAACCCAAAGAGGACAATATCTGCTAGCGGTGAGCTTGGATCGTTACAAATGGTATTAGAGCTAGAAACTAAGCGATGTGCCAGCGAGGAGGCTGTACCCCGAAGGGGGGTGGACACGAGGCGATGTGCCAGCAAGGATGCTGGCCCCAAAGGGGGTGGATTGGGGAGGTCCCACATCTGTTGGAGAAGGGAACGAGTGCCAACGGGGACGCTGCGCCCCAAAGGGGGATGGATTGTGAGATCCCACGTCGGTTGGGGAGGAGAACGAAACAATCTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACGCATTTTAAAAATTTTGAGAGGAAGCCTGGAAGGGAAAGCCCAAACAGGACAATATTTTCTGGTGGTGAAGTTGGGCAGTTACATTTGATCTCTAGTTTGGCCTAGACGAAGATAGATTAAAAAGAATCTTTTCACGAATTGGTTATTTTGAAGCTCAACTCTAATCATTCCAAGCTTGCGTTCTCCTTTATCCAAGCTATTTTGGGACGGTAAGTGCCCTTCCATGGAAAACTGGCTTCTAAAAGTGTTTTTTGAGTCAGCAGATCCAACGCAAAGGTTAGAACTTTATGATAAGAGTGATAATAGGGTCTTGCGTGCCTCCCTGTGATTAGAAAGAAACAATAGGATCTTCAATGATGTCTGAACTATTGGCTAAATGTACAATACAGTAGATGACCTCAAATTAGAGTACCATTCATACGGATTTCAGTAATTATGTCAGCTTTTCAATTAACTTAGATTGGAAGCAATTTTTTAATTCTCCTACCCTTAGTGTAACAGCCCAAGCCCATCGCTAGCAGAAGTTTTCCTTTTTGGGCTTTCCCTCAAGATTTTAAAACGCGTCTGCTAGGGAGAGGTTTCCACACTCTTATAAAGAATGCTTAGTTCCCCTCTCCAACCGATGTGGGATCTTAGAATCTACCCCTTCGGAGCCTAGTGTCCTCGCCGACACTCGTTCCTGTAACAGCCCAAGCCCACTGCTAGCAGATATTGTCCTCTTTGGGCTTTCCCTTCTAGGTTTCCCCTCAAAGTTTTAAAACGCGTATGCTAGGGAGAGATTTCCACACCCTTATAAAGAATGCTTCGTTCCCCTCTCCAACCGATGTGGAATCTCGCAATCCACCCTCTTCGGAGCCTAGTTTCGGAGCCCAGCATCCTCGCTGACACTCGTTCCTGTAACAACCCAAGCCCACCGCTAGTAGATATTGTCCGCTTTGGCCCATTACGTATCGCCGTCAATCTCACGGTTTTAAAACGCATCTACAAGAGAGAGGTTTCCACACCCTTATAAGGAATGTTTCGTTCCCCTCTCCAACTGATGTGGGATCTCACAATCCACCCCTACACTTAAGTTACAAGGAATTTGTCTCTCCTTTGGCATTTTGACTGTATTCTATTTTTCTCGATGAAACGTTTTGTTTCTTGTCAAAAAGAAAAGAATCTACGATTTGATTCTAGAACAATTTTCCTTTCCGAATTAGTTAGTTTAGCAGGGCTAGTTTACAATAAGACGAAGATTTGAATCCTATCAACCATTTCTTATCAGGAAAACGAACAATCATTCACTGAAAGATCGAAAGGAGTGATTTCTTCTATAATGGACTCCGAGTTAGTTGCGCATAACGGTGGATGCCACTGCAAGAAAGTAAGATGGCGAGTCGAAGCACCTGCTAGTGTCGTAGCTTGGGATTGCAACTGTTCTGATTGCTTCATGAGGGCCAATACACATTTTATTGTGCCTTTGGAACGGTTCAAACTTTTAGGAGATTCCAAGAACTTTATTTCAACCTATACGTTTGGTACTCACACTGCAAAACATACCTTCTGTAAAGTTTGTGGCATTACCTCATTTTACCATCCACGCTCAAACCCAGATGGAGTTGCCATTACTTTCAAATGTGTTGATCCTGGAACATTGACCCACGTTGAGATTAGGCAGTTTGATGGGAGCAACTGGGAGGCCTCTTATGGTCATACAGGCATTGCTTCATTTTCTAAGCTATCTTAGAACATTAGTTAATATGCATTTTGATATTTGCTATAATCTATGTATATGACTGTTGACATGAACTTTGTTTAGACTTGTATTTGTACCAAATGTATATTCGTATTCCGAGTCTCGAGTCTTGTATGCAGGGCACACCATATTTCTACCGAGTCTATCTCTTCTTGGACTGTTCTATTATCC

mRNA sequence

ATGACGGAAAACGAACAATCATTCACTGAAAGATCGAAAGGAGTGATTTCTTCTATAATGGACTCCGAGTTAGTTGCGCATAACGGTGGATGCCACTGCAAGAAAGTAAGATGGCGAGTCGAAGCACCTGCTAGTGTCGTAGCTTGGGATTGCAACTGTTCTGATTGCTTCATGAGGGCCAATACACATTTTATTGTGCCTTTGGAACGGTTCAAACTTTTAGGAGATTCCAAGAACTTTATTTCAACCTATACGTTTGGTACTCACACTGCAAAACATACCTTCTGTAAAGTTTGTGGCATTACCTCATTTTACCATCCACGCTCAAACCCAGATGGAGTTGCCATTACTTTCAAATGTGTTGATCCTGGAACATTGACCCACGTTGAGATTAGGCAGTTTGATGGGAGCAACTGGGAGGCCTCTTATGGTCATACAGGCATTGCTTCATTTTCTAAGCTATCTTAGAACATTAGTTAATATGCATTTTGATATTTGCTATAATCTATGTATATGACTGTTGACATGAACTTTGTTTAGACTTGTATTTGTACCAAATGTATATTCGTATTCCGAGTCTCGAGTCTTGTATGCAGGGCACACCATATTTCTACCGAGTCTATCTCTTCTTGGACTGTTCTATTATCC

Coding sequence (CDS)

ATGACGGAAAACGAACAATCATTCACTGAAAGATCGAAAGGAGTGATTTCTTCTATAATGGACTCCGAGTTAGTTGCGCATAACGGTGGATGCCACTGCAAGAAAGTAAGATGGCGAGTCGAAGCACCTGCTAGTGTCGTAGCTTGGGATTGCAACTGTTCTGATTGCTTCATGAGGGCCAATACACATTTTATTGTGCCTTTGGAACGGTTCAAACTTTTAGGAGATTCCAAGAACTTTATTTCAACCTATACGTTTGGTACTCACACTGCAAAACATACCTTCTGTAAAGTTTGTGGCATTACCTCATTTTACCATCCACGCTCAAACCCAGATGGAGTTGCCATTACTTTCAAATGTGTTGATCCTGGAACATTGACCCACGTTGAGATTAGGCAGTTTGATGGGAGCAACTGGGAGGCCTCTTATGGTCATACAGGCATTGCTTCATTTTCTAAGCTATCTTAG

Protein sequence

MTENEQSFTERSKGVISSIMDSELVAHNGGCHCKKVRWRVEAPASVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFKCVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS

Homology

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BLAST of Cp4.1LG11g07600 vs. Swiss-Prot
Match: CENPV_MOUSE (Centromere protein V OS=Mus musculus GN=Cenpv PE=1 SV=2)

HSP 1 Score: 147.5 bits (371), Expect = 1.2e-34
Identity = 73/148 (49.32%), Postives = 93/148 (62.84%), Query Frame = 1


Query: 7   SFTERSKGVISSIMDSELVAHNGGCHCKKVRWRVEAPASVVAWDCNCSDCFMRANTHFIV 66
           SF   +K ++ +     LV H GGCHC  VR+ V A A +  +DCNCS C  + N HFIV
Sbjct: 105 SFEGAAKLLLDTFEYQGLVKHTGGCHCGAVRFEVWASADLHIFDCNCSICKKKQNRHFIV 164

Query: 67  PLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFKCVDPGTL 126
           P  RFKLL  +++ I+TYTF TH A+HTFCK CG+ SFY PRSNP G  I   C+D GT+
Sbjct: 165 PASRFKLLKGAES-ITTYTFNTHKAQHTFCKRCGVQSFYTPRSNPGGFGIAPHCLDEGTV 224

Query: 127 THVEIRQFDGSNWE-ASYGHTGIASFSK 154
             V   +F+GS+WE A   H  I + SK
Sbjct: 225 RSVVTEEFNGSDWERAMKEHKTIKNMSK 251

[Close]

BLAST of Cp4.1LG11g07600 vs. Swiss-Prot
Match: CENPV_HUMAN (Centromere protein V OS=Homo sapiens GN=CENPV PE=1 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 7.8e-34
Identity = 75/160 (46.88%), Postives = 98/160 (61.25%), Query Frame = 1


Query: 3   ENEQSFTERSK----GVISSIMDS----ELVAHNGGCHCKKVRWRVEAPASVVAWDCNCS 62
           E  ++F +R K    G    ++D+     LV H GGCHC  VR+ V A A +  +DCNCS
Sbjct: 116 ERWETFQKRQKLTSEGAAKLLLDTFEYQGLVKHTGGCHCGAVRFEVWASADLHIFDCNCS 175

Query: 63  DCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGV 122
            C  + N HFIVP  RFKLL  +++ I+TYTF TH A+HTFCK CG+ SFY PRSNP G 
Sbjct: 176 ICKKKQNRHFIVPASRFKLLKGAEH-ITTYTFNTHKAQHTFCKRCGVQSFYTPRSNPGGF 235

Query: 123 AITFKCVDPGTLTHVEIRQFDGSNWE-ASYGHTGIASFSK 154
            I   C+D GT+  +   +F+GS+WE A   H  I + SK
Sbjct: 236 GIAPHCLDEGTVRSMVTEEFNGSDWEKAMKEHKTIKNMSK 274

[Close]

BLAST of Cp4.1LG11g07600 vs. TrEMBL
Match: A0A0A0KE05_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G403060 PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 1.6e-70
Identity = 121/136 (88.97%), Postives = 128/136 (94.12%), Query Frame = 1


Query: 20  MDSELVAHNGGCHCKKVRWRVEAPASVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKN 79
           M SELV H+GGCHCKKVRWRVEAPASVVAWDCNCS+CFMRANTHFIVPLERFKLLGDS N
Sbjct: 1   MASELVVHHGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60

Query: 80  FISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFKCVDPGTLTHVEIRQFDGSNW 139
           F+STYTFG+HTAKHTFCK CGITSFYHPRSNPDGVAITFKCVDPGTLTH+E+RQFDGSNW
Sbjct: 61  FVSTYTFGSHTAKHTFCKNCGITSFYHPRSNPDGVAITFKCVDPGTLTHIEVRQFDGSNW 120

Query: 140 EASYGHTGIASFSKLS 156
           EAS   TGIAS SKL+
Sbjct: 121 EASCDQTGIASLSKLN 136

[Close]

BLAST of Cp4.1LG11g07600 vs. TrEMBL
Match: A0A0B2PMN5_GLYSO (Centromere protein V OS=Glycine soja GN=glysoja_032212 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 8.6e-64
Identity = 104/135 (77.04%), Postives = 121/135 (89.63%), Query Frame = 1


Query: 20  MDSELVAHNGGCHCKKVRWRVEAPASVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKN 79
           MD+E V H GGCHCK VRW+V AP+SVVAWDCNCS C+MRANTHFIVP + F+LLGDS+ 
Sbjct: 1   MDAEKVVHTGGCHCKSVRWKVVAPSSVVAWDCNCSTCYMRANTHFIVPADNFELLGDSEK 60

Query: 80  FISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFKCVDPGTLTHVEIRQFDGSNW 139
           F++TYTF THTAKHTFCK+CGITSFYHPRSNPDGVA+TF+CVDPGTLTHVEIR FDG NW
Sbjct: 61  FLTTYTFATHTAKHTFCKICGITSFYHPRSNPDGVAVTFRCVDPGTLTHVEIRHFDGKNW 120

Query: 140 EASYGHTGIASFSKL 155
           +++Y  TGI+SFSK+
Sbjct: 121 DSAYNQTGISSFSKV 135

[Close]

BLAST of Cp4.1LG11g07600 vs. TrEMBL
Match: I1MZF8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G041500 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 8.6e-64
Identity = 104/135 (77.04%), Postives = 121/135 (89.63%), Query Frame = 1


Query: 20  MDSELVAHNGGCHCKKVRWRVEAPASVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKN 79
           MD+E V H GGCHCK VRW+V AP+SVVAWDCNCS C+MRANTHFIVP + F+LLGDS+ 
Sbjct: 1   MDAEKVVHTGGCHCKSVRWKVVAPSSVVAWDCNCSTCYMRANTHFIVPADNFELLGDSEK 60

Query: 80  FISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFKCVDPGTLTHVEIRQFDGSNW 139
           F++TYTF THTAKHTFCK+CGITSFYHPRSNPDGVA+TF+CVDPGTLTHVEIR FDG NW
Sbjct: 61  FLTTYTFATHTAKHTFCKICGITSFYHPRSNPDGVAVTFRCVDPGTLTHVEIRHFDGKNW 120

Query: 140 EASYGHTGIASFSKL 155
           +++Y  TGI+SFSK+
Sbjct: 121 DSAYNQTGISSFSKV 135

[Close]

BLAST of Cp4.1LG11g07600 vs. TrEMBL
Match: M1B0N8_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400013239 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.9e-63
Identity = 109/134 (81.34%), Postives = 119/134 (88.81%), Query Frame = 1


Query: 20  MDSELVAHNGGCHCKKVRWRVEAPASVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKN 79
           MDSELV H GGCHCK+VRW+V AP+S+VAWDCNCSDC MR NTHFIVP ERF+LLGDSK 
Sbjct: 1   MDSELVLHTGGCHCKRVRWQVYAPSSIVAWDCNCSDCSMRRNTHFIVPSERFELLGDSKE 60

Query: 80  FISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFKCVDPGTLTHVEIRQFDGSNW 139
           FI+TYTFGTHTAKHTFCKVCGITSFY PRSNPDG+A+T +CVDPGTLTHVEI+ FDG NW
Sbjct: 61  FITTYTFGTHTAKHTFCKVCGITSFYIPRSNPDGIAVTLRCVDPGTLTHVEIKCFDGQNW 120

Query: 140 EASYGHTGIASFSK 154
           E SY  TGIAS SK
Sbjct: 121 EGSYEQTGIASCSK 134

[Close]

BLAST of Cp4.1LG11g07600 vs. TrEMBL
Match: K4D5V0_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.9e-63
Identity = 109/134 (81.34%), Postives = 119/134 (88.81%), Query Frame = 1


Query: 20  MDSELVAHNGGCHCKKVRWRVEAPASVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKN 79
           MDSELV H GGCHCK+VRW+V AP+S+VAWDCNCSDC MR NTHFIVP ERF+LLGDSK 
Sbjct: 1   MDSELVLHTGGCHCKRVRWQVYAPSSIVAWDCNCSDCSMRRNTHFIVPSERFELLGDSKE 60

Query: 80  FISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFKCVDPGTLTHVEIRQFDGSNW 139
           FI+TYTFGTHTAKHTFCKVCGITSFY PRSNPDG+A+T +CVDPGTLTHVEI+ FDG NW
Sbjct: 61  FITTYTFGTHTAKHTFCKVCGITSFYIPRSNPDGIAVTLRCVDPGTLTHVEIKCFDGQNW 120

Query: 140 EASYGHTGIASFSK 154
           E SY  TGIAS SK
Sbjct: 121 EGSYEQTGIASCSK 134

[Close]

BLAST of Cp4.1LG11g07600 vs. TAIR10
Match: AT5G16940.1 (AT5G16940.1 carbon-sulfur lyases)

HSP 1 Score: 226.5 bits (576), Expect = 1.1e-59
Identity = 96/134 (71.64%), Postives = 111/134 (82.84%), Query Frame = 1


Query: 20  MDSELVAHNGGCHCKKVRWRVEAPASVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKN 79
           M+SEL+ H GGCHC K++WRV+A  SV+AW CNCSDC MR N HFIVP   F+LL DSK+
Sbjct: 1   MESELIFHEGGCHCGKIKWRVKAARSVIAWSCNCSDCSMRGNVHFIVPSSNFELLDDSKD 60

Query: 80  FISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFKCVDPGTLTHVEIRQFDGSNW 139
           FI+TYTFGTHTAKHTFCKVCGITSFY PRSNPDGVA+T KCV  GTL H+E++ +DG NW
Sbjct: 61  FITTYTFGTHTAKHTFCKVCGITSFYIPRSNPDGVAVTVKCVKSGTLAHIEVKSYDGQNW 120

Query: 140 EASYGHTGIASFSK 154
           E S+  TGIASFSK
Sbjct: 121 EMSHKKTGIASFSK 134

[Close]

BLAST of Cp4.1LG11g07600 vs. NCBI nr
Match: gi|659129686|ref|XP_008464791.1| (PREDICTED: centromere protein V isoform X2 [Cucumis melo])

HSP 1 Score: 281.6 bits (719), Expect = 8.5e-73
Identity = 125/136 (91.91%), Postives = 130/136 (95.59%), Query Frame = 1


Query: 20  MDSELVAHNGGCHCKKVRWRVEAPASVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKN 79
           M SELV HNGGCHCKKVRWRVEAPASVVAWDCNCS+CFMRANTHFIVPLERFKLLGDS N
Sbjct: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60

Query: 80  FISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFKCVDPGTLTHVEIRQFDGSNW 139
           F+STYTFG+HTAKHTFCK CGITSFY PRSNPDGVAITFKCVDPGTLTHVE+RQFDGSNW
Sbjct: 61  FVSTYTFGSHTAKHTFCKNCGITSFYRPRSNPDGVAITFKCVDPGTLTHVEVRQFDGSNW 120

Query: 140 EASYGHTGIASFSKLS 156
           EASY HTGIASFSKL+
Sbjct: 121 EASYDHTGIASFSKLN 136

[Close]

BLAST of Cp4.1LG11g07600 vs. NCBI nr
Match: gi|659129688|ref|XP_008464792.1| (PREDICTED: centromere protein V isoform X3 [Cucumis melo])

HSP 1 Score: 281.6 bits (719), Expect = 8.5e-73
Identity = 125/136 (91.91%), Postives = 130/136 (95.59%), Query Frame = 1


Query: 20  MDSELVAHNGGCHCKKVRWRVEAPASVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKN 79
           M SELV HNGGCHCKKVRWRVEAPASVVAWDCNCS+CFMRANTHFIVPLERFKLLGDS N
Sbjct: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60

Query: 80  FISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFKCVDPGTLTHVEIRQFDGSNW 139
           F+STYTFG+HTAKHTFCK CGITSFY PRSNPDGVAITFKCVDPGTLTHVE+RQFDGSNW
Sbjct: 61  FVSTYTFGSHTAKHTFCKNCGITSFYRPRSNPDGVAITFKCVDPGTLTHVEVRQFDGSNW 120

Query: 140 EASYGHTGIASFSKLS 156
           EASY HTGIASFSKL+
Sbjct: 121 EASYDHTGIASFSKLN 136

[Close]

BLAST of Cp4.1LG11g07600 vs. NCBI nr
Match: gi|659129690|ref|XP_008464793.1| (PREDICTED: centromere protein V isoform X4 [Cucumis melo])

HSP 1 Score: 281.6 bits (719), Expect = 8.5e-73
Identity = 125/136 (91.91%), Postives = 130/136 (95.59%), Query Frame = 1


Query: 20  MDSELVAHNGGCHCKKVRWRVEAPASVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKN 79
           M SELV HNGGCHCKKVRWRVEAPASVVAWDCNCS+CFMRANTHFIVPLERFKLLGDS N
Sbjct: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60

Query: 80  FISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFKCVDPGTLTHVEIRQFDGSNW 139
           F+STYTFG+HTAKHTFCK CGITSFY PRSNPDGVAITFKCVDPGTLTHVE+RQFDGSNW
Sbjct: 61  FVSTYTFGSHTAKHTFCKNCGITSFYRPRSNPDGVAITFKCVDPGTLTHVEVRQFDGSNW 120

Query: 140 EASYGHTGIASFSKLS 156
           EASY HTGIASFSKL+
Sbjct: 121 EASYDHTGIASFSKLN 136

[Close]

BLAST of Cp4.1LG11g07600 vs. NCBI nr
Match: gi|659129684|ref|XP_008464790.1| (PREDICTED: centromere protein V isoform X1 [Cucumis melo])

HSP 1 Score: 281.6 bits (719), Expect = 8.5e-73
Identity = 125/136 (91.91%), Postives = 130/136 (95.59%), Query Frame = 1


Query: 20  MDSELVAHNGGCHCKKVRWRVEAPASVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKN 79
           M SELV HNGGCHCKKVRWRVEAPASVVAWDCNCS+CFMRANTHFIVPLERFKLLGDS N
Sbjct: 1   MASELVVHNGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60

Query: 80  FISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFKCVDPGTLTHVEIRQFDGSNW 139
           F+STYTFG+HTAKHTFCK CGITSFY PRSNPDGVAITFKCVDPGTLTHVE+RQFDGSNW
Sbjct: 61  FVSTYTFGSHTAKHTFCKNCGITSFYRPRSNPDGVAITFKCVDPGTLTHVEVRQFDGSNW 120

Query: 140 EASYGHTGIASFSKLS 156
           EASY HTGIASFSKL+
Sbjct: 121 EASYDHTGIASFSKLN 136

[Close]

BLAST of Cp4.1LG11g07600 vs. NCBI nr
Match: gi|700192584|gb|KGN47788.1| (hypothetical protein Csa_6G403060 [Cucumis sativus])

HSP 1 Score: 273.5 bits (698), Expect = 2.3e-70
Identity = 121/136 (88.97%), Postives = 128/136 (94.12%), Query Frame = 1


Query: 20  MDSELVAHNGGCHCKKVRWRVEAPASVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKN 79
           M SELV H+GGCHCKKVRWRVEAPASVVAWDCNCS+CFMRANTHFIVPLERFKLLGDS N
Sbjct: 1   MASELVVHHGGCHCKKVRWRVEAPASVVAWDCNCSNCFMRANTHFIVPLERFKLLGDSSN 60

Query: 80  FISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFKCVDPGTLTHVEIRQFDGSNW 139
           F+STYTFG+HTAKHTFCK CGITSFYHPRSNPDGVAITFKCVDPGTLTH+E+RQFDGSNW
Sbjct: 61  FVSTYTFGSHTAKHTFCKNCGITSFYHPRSNPDGVAITFKCVDPGTLTHIEVRQFDGSNW 120

Query: 140 EASYGHTGIASFSKLS 156
           EAS   TGIAS SKL+
Sbjct: 121 EASCDQTGIASLSKLN 136

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g07600 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CENPV_MOUSE	1.2e-34	49.32	Centromere protein V OS=Mus musculus GN=Cenpv PE=1 SV=2	[more]
CENPV_HUMAN	7.8e-34	46.88	Centromere protein V OS=Homo sapiens GN=CENPV PE=1 SV=1	[more]

BLAST of Cp4.1LG11g07600 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KE05_CUCSA	1.6e-70	88.97	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G403060 PE=4 SV=1	[more]
A0A0B2PMN5_GLYSO	8.6e-64	77.04	Centromere protein V OS=Glycine soja GN=glysoja_032212 PE=4 SV=1	[more]
I1MZF8_SOYBN	8.6e-64	77.04	Uncharacterized protein OS=Glycine max GN=GLYMA_18G041500 PE=4 SV=1	[more]
M1B0N8_SOLTU	1.9e-63	81.34	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400013239 PE=4 SV=1	[more]
K4D5V0_SOLLC	1.9e-63	81.34	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]

BLAST of Cp4.1LG11g07600 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G16940.1	1.1e-59	71.64	carbon-sulfur lyases	[more]

BLAST of Cp4.1LG11g07600 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659129686\|ref\|XP_008464791.1\|	8.5e-73	91.91	PREDICTED: centromere protein V isoform X2 [Cucumis melo]	[more]
gi\|659129688\|ref\|XP_008464792.1\|	8.5e-73	91.91	PREDICTED: centromere protein V isoform X3 [Cucumis melo]	[more]
gi\|659129690\|ref\|XP_008464793.1\|	8.5e-73	91.91	PREDICTED: centromere protein V isoform X4 [Cucumis melo]	[more]
gi\|659129684\|ref\|XP_008464790.1\|	8.5e-73	91.91	PREDICTED: centromere protein V isoform X1 [Cucumis melo]	[more]
gi\|700192584\|gb\|KGN47788.1\|	2.3e-70	88.97	hypothetical protein Csa_6G403060 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016846	carbon-sulfur lyase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0008152	metabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR011057	Mss4-like_sf
IPR006913	GFA/CENP-V

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016846	carbon-sulfur lyase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g07600.1	Cp4.1LG11g07600.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006913	Glutathione-dependent formaldehyde-activating enzyme/centromere protein V	GENE3D	G3DSA:3.90.1590.10		coord: 11..126 score: 6.7
IPR006913	Glutathione-dependent formaldehyde-activating enzyme/centromere protein V	PFAM	PF04828	GFA	coord: 50..124 score: 1.
IPR011057	Mss4-like	unknown	SSF51316	Mss4-like	coord: 16..139 score: 3.66
None	No IPR available	PANTHER	PTHR28620	FAMILY NOT NAMED	coord: 23..153 score: 8.9
None	No IPR available	PANTHER	PTHR28620:SF1	PROTEIN F25B4.8, ISOFORM A	coord: 23..153 score: 8.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG11g07600	Cucsa.005350	Cucumber (Gy14) v1	cgycpeB0088
Cp4.1LG11g07600	CmaCh05G009500	Cucurbita maxima (Rimu)	cmacpeB767
Cp4.1LG11g07600	CmoCh05G009690	Cucurbita moschata (Rifu)	cmocpeB721
Cp4.1LG11g07600	Cla021902	Watermelon (97103) v1	cpewmB100
Cp4.1LG11g07600	Csa6G403060	Cucumber (Chinese Long) v2	cpecuB121
Cp4.1LG11g07600	MELO3C026504	Melon (DHL92) v3.5.1	cpemeB090
Cp4.1LG11g07600	ClCG08G009070	Watermelon (Charleston Gray)	cpewcgB123
Cp4.1LG11g07600	CSPI06G21050	Wild cucumber (PI 183967)	cpecpiB119
Cp4.1LG11g07600	Lsi08G007570	Bottle gourd (USVL1VR-Ls)	cpelsiB099
Cp4.1LG11g07600	MELO3C026504.2	Melon (DHL92) v3.6.1	cpemedB113
Cp4.1LG11g07600	CsaV3_6G036070	Cucumber (Chinese Long) v3	cpecucB0135
Cp4.1LG11g07600	Bhi04G000995	Wax gourd	cpewgoB0140
Cp4.1LG11g07600	Carg21904	Silver-seed gourd	carcpeB0297

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG11g07600	Cucurbita pepo (Zucchini)	cpecpeB149
Cp4.1LG11g07600	Cucurbita maxima (Rimu)	cmacpeB181
Cp4.1LG11g07600	Cucurbita moschata (Rifu)	cmocpeB155
Cp4.1LG11g07600	Cucumber (Gy14) v2	cgybcpeB717
Cp4.1LG11g07600	Silver-seed gourd	carcpeB0191