Carg21904-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGATTTCAACGTAATCACTGCTTATAGATGTTAGAATTAAAAACCAAATCGACGGAAGTACTTTCTGTTTAAATGCTTCAATGATTTGTAACAGGGTTAGATTTGACTATATAAGAAGGAGGAGACTCTCCAAATGGTTTAGGGTTCGATTTGAGAATTTAACAACTCCTTGACGTTTACCGAGCTATTCAATTAACATTGTGACAGGATCCCCCTGTTTAAGGTATGTTCATATTCAAAACTATCATCTCTGCATTCTTTTAGTGTAATATATTACCAGTAGGTGCTCATGTTCGAAAGCTTTGATATGTGATTCCGTTTATGTTTGTTAAATTCTGTTCTTGCTGGCCTTTGATTTTGAATCTGTTGATTTAAGCTTCATCCAATTTGGGATGAGAAAGAAAGTTACTTACATTGTTGGTGGAGTAGTAATTAGGAGGGTTCCTCTTAGACAATCGAAGGCCACCTTGAGAAAAGGCCCTGAGGAGCATATAATTGGATTGACATTCTTTCCTTTCTTATGTGATATTGTAGTAACTTGATAGTCACATCCCAGTTTTTGCTTTGAGTATTTCTTCTACGCATACCAGTTAAGGTTGTATGTAGCCTTATGAAGGAGTTTTTGATAGAAGGAATGTGGTTCTACTTTTCTTCCAAGTTTGATGCGAGATCCTCATCCGTTGGAGAGAAGAACGAAACACTTTTTATAAGGGTGTGGAAATCTCTCCCTAGCAGACATGTTTTAAAAACTTTGAGAGGAAGCGTGGAAGGGAAAACCCAAAGAGGATAATATCTGCTAGCAGTGGGCTTGGGTCGTTACAAATGGTATTAGAGCTAGAAACTAAGCGATGTGCTAGCGAGGAGGCTGAACCCCGAAGGGGGGTGGACACGAGGCGATGTGCCAGCAAGGATGCTGGCCCCAAAGGGGGTGGATTGGGGAGGTCCCACATCTGTTGGAGAAGGGAACGAGTGCCAACAAGGATGCTGCGCCCCAAAGGGGATGGATTGTGAGATCCCATGTCGGTTGGGGAGGAGAACAAAACAATCTTATAAGGGTGTGGAAACTTCTCCCTAGCAGACGTGTTTAAAAAATTTTAGAGAGGAAGCCTGGAAGAGAAAGCCAAACAGGACAATATTGTCTGGTAGTGAAGTTGGGCCGTTACATTTGATCTCTAGTTTGGCCTCGACGAAGATAGATTAAAAAGAATCTTTTCACAAATTGGTTATTTTGAAGCTCAACTCTAATCATTCCAAGCTTGCGTTCTACTTTATCCAAGCTATTTTGGGGCGGTAAGTGCCCTTCCATGGAAAACTGGCTTCTGAAAGTGTTTTTTTAGTTAGCAGATCCAACGCAAAGGTTAGAACTTTATGAAAAGAGTGATAATAGGGTCTTGCGTGCCTCCCTGAGATTAGAAAGAAACAATAGGATCTTCAATGATGTCTGAACTATTGGCTAAATGTACAATACAGTAGATGACCTCAAATTAGAGTACCATTCATACGAATTTCAGTAATTATGTCAGCTTTTCAATTAACTTAGATTGGAAGCAATTTTTTAACGGCCCAAGCCCAAGCCCAAGCCCACCGCTAGCAGAAGTTGTCATCTTTGGGCTTTCCCTTCTAGGCTTCCCCTCAAGATTTTAAAACGCGTCTGTTAGGGAGAGGTTGATTTTAAAACGCATCTGTTAGGGAGAGGTTGATTTTAAAACGCGTCTGCTAGGGAGAGGTTGATTTTAAAACGCGTCTACTAGGGAGAGGTTTCCACACTCTTATAAAGAATGCTTCGTTCTCCTCTCCAACCGATGTGAGATCTCACAATTCACCCCTTCAGGGCCTAGCGTCCTCGCCGACACTCGTTCCTGTAATAGCCCAAGCCCACTGCTAGCAGATATTGTCCTCTTTGGGCTTTCCCTTCCAGGTTTCCTCTCAAGGTTTTTAAACGTGTATGATAGGAAGAGGTTTCCACACCCTTATAAAGAATGTTTCATTCCCCTCTCCAACCGATGTGGAATCTCGCAATCCACCCCCTTTGGAGCCTAGCTTCGAAGCCCAGCATCCTCGTTGGCACTTGTTCCTGTAATAGCCCAAGCCCACCGCTAGTAGATATTGTCCGCTTTGGCCTATTACGTATCGCCGTCAATCTCACGGTTTTAAAACGCATCTACTATGGAGAGGTTTCCACACCCTTATAAGGAAGGTTTCGTTTCCCTCTCCAACCAATGTGGGATCTCACAGTTCCTTTCTCCAATCGATGTGGAATCTCACAATCCACCCCTACACTTAAGTTACAAGGAATTTGTCTCTCCTTTGGCGTTTTGGCTGTATTCTATTTTTCTCGATGAAACATTTGTCTCTTGTCAAAAAGAAAAGAATCGAAAAATAGTAAGAGAATACAATTTGATTCTAGAACAATTTTCCTTTTCGAATTAGTTAGTTTAGCAGGGCTAGTTTACAATAAGATGAAGATTTAAATCCTATGACCATTTTTTATCAGGAAAGCGAACAATCATTCACTAAAAGATTGAAAGGGGTGATTTCTTCTATAATGGACTCCGAGTTAGTTGTGCATAACGGTGGATGCCACTGCAAGAACGTAAGATGGCGAGTCGAAGCACCTACTAGTGTCGTAGCTTGGGATTGTAACTGTTCTGATTGCTTCATGAGGGCCAATACACATTTTATTGTGCCTTTGGAACGGTTCAAACTTTTAGGAGATTCCAAGAACTTTATTTCAACCTATACGTTTGGTACTCACACTGCAAAACATACCTTCTGTAAAGTTTGTGGCATTACCTCATTTTACCATCCACGCTCAAACCCAGATGGAGTTGCCATTACTTTCAAATGTGTTGATCCTGGAACATTGACCCATGTTGAGATTAGGCAGTTTGATGGGAGCAACTGGGAGGCCTCATATGGTCATACAGGCATTGCTTCATTTTCTAAGCTGTCTTAGAACATTAGTTAATATGCATTTTGATATTTGCTATAATCTATGTTTGTGACTGTTGACACGAACTTTGTTTAGACTTGTATTTGTATCAAATGTATATTCGTATTCCCGAGTCTCGAGTCTTGTATGCAGGCACACGATATTTCTACCGAGTCTATCTCTTCTTGGACTGTTCTGTTATCCCTTTTGACCACTGTATTTTCCTCTTTTGCCACACAATGAAATCTGAGACTCGAACCAAAATAAAAAATGTGTTGTTTGTTTGGTTTAAACCTATTCTAGATTGTTAGGGTCAATTTAGGTTAAATTACAAGTTTAGTTCTAAACTTTGAATTTGGTTCTGAAC ATGATTTCAACATCCAACGCAAAGGAAAGCGAACAATCATTCACTAAAAGATTGAAAGGGGTGATTTCTTCTATAATGGACTCCGAGTTAGTTGTGCATAACGGTGGATGCCACTGCAAGAACGTAAGATGGCGAGTCGAAGCACCTACTAGTGTCGTAGCTTGGGATTGTAACTGTTCTGATTGCTTCATGAGGGCCAATACACATTTTATTGTGCCTTTGGAACGGTTCAAACTTTTAGGAGATTCCAAGAACTTTATTTCAACCTATACGTTTGGTACTCACACTGCAAAACATACCTTCTGTAAAGTTTGTGGCATTACCTCATTTTACCATCCACGCTCAAACCCAGATGGAGTTGCCATTACTTTCAAATGTGTTGATCCTGGAACATTGACCCATGTTGAGATTAGGCAGTTTGATGGGAGCAACTGGGAGGCCTCATATGGTCATACAGGCATTGCTTCATTTTCTAAGCTGTCTTAGAACATTAGTTAATATGCATTTTGATATTTGCTATAATCTATGTTTGTGACTGTTGACACGAACTTTGTTTAGACTTGTATTTGTATCAAATGTATATTCGTATTCCCGAGTCTCGAGTCTTGTATGCAGGCACACGATATTTCTACCGAGTCTATCTCTTCTTGGACTGTTCTGTTATCCCTTTTGACCACTGTATTTTCCTCTTTTGCCACACAATGAAATCTGAGACTCGAACCAAAATAAAAAATGTGTTGTTTGTTTGGTTTAAACCTATTCTAGATTGTTAGGGTCAATTTAGGTTAAATTACAAGTTTAGTTCTAAACTTTGAATTTGGTTCTGAAC ATGATTTCAACATCCAACGCAAAGGAAAGCGAACAATCATTCACTAAAAGATTGAAAGGGGTGATTTCTTCTATAATGGACTCCGAGTTAGTTGTGCATAACGGTGGATGCCACTGCAAGAACGTAAGATGGCGAGTCGAAGCACCTACTAGTGTCGTAGCTTGGGATTGTAACTGTTCTGATTGCTTCATGAGGGCCAATACACATTTTATTGTGCCTTTGGAACGGTTCAAACTTTTAGGAGATTCCAAGAACTTTATTTCAACCTATACGTTTGGTACTCACACTGCAAAACATACCTTCTGTAAAGTTTGTGGCATTACCTCATTTTACCATCCACGCTCAAACCCAGATGGAGTTGCCATTACTTTCAAATGTGTTGATCCTGGAACATTGACCCATGTTGAGATTAGGCAGTTTGATGGGAGCAACTGGGAGGCCTCATATGGTCATACAGGCATTGCTTCATTTTCTAAGCTGTCTTAG MISTSNAKESEQSFTKRLKGVISSIMDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFKCVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS
BLAST of Carg21904-RA vs. NCBI nr
Match: XP_022946627.1 (centromere protein V-like [Cucurbita moschata] >XP_022946628.1 centromere protein V-like [Cucurbita moschata] >XP_022946629.1 centromere protein V-like [Cucurbita moschata]) HSP 1 Score: 302.8 bits (774), Expect = 7.2e-79 Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0
BLAST of Carg21904-RA vs. NCBI nr
Match: XP_023546052.1 (centromere protein V [Cucurbita pepo subsp. pepo] >XP_023546053.1 centromere protein V [Cucurbita pepo subsp. pepo] >XP_023546054.1 centromere protein V [Cucurbita pepo subsp. pepo]) HSP 1 Score: 297.0 bits (759), Expect = 3.9e-77 Identity = 133/136 (97.79%), Postives = 133/136 (97.79%), Query Frame = 0
BLAST of Carg21904-RA vs. NCBI nr
Match: XP_022999779.1 (centromere protein V-like [Cucurbita maxima] >XP_022999780.1 centromere protein V-like [Cucurbita maxima] >XP_022999781.1 centromere protein V-like [Cucurbita maxima]) HSP 1 Score: 294.3 bits (752), Expect = 2.6e-76 Identity = 132/136 (97.06%), Postives = 133/136 (97.79%), Query Frame = 0
BLAST of Carg21904-RA vs. NCBI nr
Match: XP_008464790.1 (PREDICTED: centromere protein V isoform X2 [Cucumis melo]) HSP 1 Score: 279.6 bits (714), Expect = 6.5e-72 Identity = 124/136 (91.18%), Postives = 129/136 (94.85%), Query Frame = 0
BLAST of Carg21904-RA vs. NCBI nr
Match: XP_008464791.1 (PREDICTED: centromere protein V isoform X3 [Cucumis melo]) HSP 1 Score: 279.6 bits (714), Expect = 6.5e-72 Identity = 124/136 (91.18%), Postives = 129/136 (94.85%), Query Frame = 0
BLAST of Carg21904-RA vs. TAIR10
Match: AT5G16940.1 (carbon-sulfur lyases) HSP 1 Score: 225.3 bits (573), Expect = 2.6e-59 Identity = 95/134 (70.90%), Postives = 110/134 (82.09%), Query Frame = 0
BLAST of Carg21904-RA vs. Swiss-Prot
Match: sp|Q9CXS4|CENPV_MOUSE (Centromere protein V OS=Mus musculus OX=10090 GN=Cenpv PE=1 SV=2) HSP 1 Score: 145.2 bits (365), Expect = 6.3e-34 Identity = 73/153 (47.71%), Postives = 92/153 (60.13%), Query Frame = 0
BLAST of Carg21904-RA vs. Swiss-Prot
Match: sp|Q7Z7K6|CENPV_HUMAN (Centromere protein V OS=Homo sapiens OX=9606 GN=CENPV PE=1 SV=1) HSP 1 Score: 144.1 bits (362), Expect = 1.4e-33 Identity = 75/161 (46.58%), Postives = 98/161 (60.87%), Query Frame = 0
BLAST of Carg21904-RA vs. TrEMBL
Match: tr|A0A1S3CMD8|A0A1S3CMD8_CUCME (centromere protein V isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502595 PE=4 SV=1) HSP 1 Score: 279.6 bits (714), Expect = 4.3e-72 Identity = 124/136 (91.18%), Postives = 129/136 (94.85%), Query Frame = 0
BLAST of Carg21904-RA vs. TrEMBL
Match: tr|A0A1S3CMF5|A0A1S3CMF5_CUCME (centromere protein V isoform X5 OS=Cucumis melo OX=3656 GN=LOC103502595 PE=4 SV=1) HSP 1 Score: 279.6 bits (714), Expect = 4.3e-72 Identity = 124/136 (91.18%), Postives = 129/136 (94.85%), Query Frame = 0
BLAST of Carg21904-RA vs. TrEMBL
Match: tr|A0A1S4E4W3|A0A1S4E4W3_CUCME (centromere protein V isoform X6 OS=Cucumis melo OX=3656 GN=LOC103502595 PE=4 SV=1) HSP 1 Score: 279.6 bits (714), Expect = 4.3e-72 Identity = 124/136 (91.18%), Postives = 129/136 (94.85%), Query Frame = 0
BLAST of Carg21904-RA vs. TrEMBL
Match: tr|A0A1S4E5L6|A0A1S4E5L6_CUCME (centromere protein V isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502595 PE=4 SV=1) HSP 1 Score: 279.6 bits (714), Expect = 4.3e-72 Identity = 124/136 (91.18%), Postives = 129/136 (94.85%), Query Frame = 0
BLAST of Carg21904-RA vs. TrEMBL
Match: tr|A0A1S3CNW6|A0A1S3CNW6_CUCME (centromere protein V isoform X4 OS=Cucumis melo OX=3656 GN=LOC103502595 PE=4 SV=1) HSP 1 Score: 279.6 bits (714), Expect = 4.3e-72 Identity = 124/136 (91.18%), Postives = 129/136 (94.85%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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