Carg20968 (gene) Silver-seed gourd

Overview
NameCarg20968
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionpentatricopeptide repeat-containing protein At5g18950
LocationCucurbita_argyrosperma_scaffold_170 : 83257 .. 85266 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAATATTACATCTCTAATGATCTCCATTCGCCAAAACTCACGACTTGTGAAAAACCTTAGGATCCACATCCGGAATCTCTCGGTGGAAATGAATGGAGGCAAAGATGGGTGTGAAGAGATTAATCTGAGTGAGAAATTGTTGAACCCTACTCACAGCCAAGACGTCACTGAGATATCTAAAGAGGTTTGTAAGGTCCTCAGGAGCAAACCCAAATGGGAGCAGACTCTGCTCTCTGATTACCCTTCTTTCAATTTCCACGACCCTTCTTTTTTTCGCGAGCTATTGAAGCAGTTAAACAATGTTTTGCTTTCGTTGAGGTTTTTTCTTTGGCTGAGTTCTCAGCCTGAGTTCTTGCCCCATCCAGTCAGCTGTAACACGCTCTTTGATGCCCTTTTGGAGGCCAAGGCTTGTGTTCCCGCTAAATCTTTTCTTCATTCTTTCGGTTTTAGTCCGGAGCCTGCTTCTTTGGAGAATTACATTCGATGTGTTTGCGAGGGTGGATTGGTTGAGGAAGCTGTTAATGTATTTGATGTGTTAAAGGAGGCTGGATATCGTCCATCCATTGAGACTTGGAACTTTGCTTTCCAGAGTTGTCTTAAGTTTGGGAGGACTGATCTTATGTGGAAACTGTATGCAGAGATGATGGAAACTGGTGTGCAAGCGGATGTGGAGATTGAGACTGTGGGGTATCTTATCCAAGCGCTTTGTAGTGATAACAACGTTTCAAAAGCTTATGAGCTTCTAAGACAGGCTTTAGAAGATGGATTAGCCCCTTCTAATGATGCTTTCAACAAATTGATTTCTTTGTTCTGTGAGGAGAAGAATTATGACAGAGTATCAGAGCTTCTTCACACAATGATAGCCAAGAACCGTAATCCCGATATTTTTACCTATCAGGAAATCATTAACGGGCTCTGCAAGAAACACAGGCAGCTGCAGGCATTTCAGGTTTTTAACGGCCTCAAGGATCGGGGTTATGCCCCTGATATGGTCATGTATACAACAATGATTCATGGCCTGTGTAAGATGAGCTGGCTTGGAGATGCTAGAAAGCTGTGGTTTGAGATGATTGATAAGGGATTTCTTCCAAATGAATATACGTACAACACATTGATTTATGGATTTTGTAAGATTGGTAATTTGGATGAGGCCTTGAAGCTATATAAGGAAATGCATGATAGAGGTTATAAAGAAACCACTCTGAGCTGCAACACAGTGATTGCAGGTTTGTGTCTACATGGAAGGACAGACGAAGCGTACAACTTCTTTCAAGAAATGCCTTGCAAGGACGTAGTTTGCGATGTTGTAACATACAATACCCTGATTCAAGGATTTTGCAGAGAGGGGAAGATACTGCAATGCAGAGACCTATTCAAGGAGTTGCTAGAGAAGGGGTTGCAGCCTTCAACTTCCTCTTATACTCATCTCATTCAAAAGCTTTGTCAAGTGGGTGATGTGCAAGAAGCAAAGAAAATGTGGAATGACATGCATAATAGAGGTCTTCAGCCAATGGTGTGCACTCGCGATCACATCATTAATGGATTATGTGAGCAAGGATGTGCGGTAGAGGGGGTGGAGTGGTTGATGACTATGTTGAAGAGCAATCTCAAGCCTCAAAAGCAAACTTTTGATAAGTTGGTTCAGAGTCTCACTCAAATAGGTAAATTAGATGATTCTTTATTGGTCATAGGCTCAATGTTTAGAGTAGGTTATAAACTAGAAGAAGGCACTCTCAGTTGTCTCTTGAATAAACTATGTGAAAACAAGTATCAGTTTGCTGAATCACAATTAGAGGAAATCATAAATTTCAATTAGTAGGAGAATCTATATATGTTCTCAGGAGGCCAGTTTAAGATGGTTGTACTCCTGACTAGAAAGTGCGGAGATTGGAAGCTGTTGAACTTGCTTAGAAGTGCCTGTCATCGATGCTTTAAGGTAGATCCGAAGGCTGATTTGGGTCGTAAATTTGCTCAAGTTGTTGGGGTGGACCATCCATCTGCATGA

mRNA sequence

ATGGCGAATATTACATCTCTAATGATCTCCATTCGCCAAAACTCACGACTTGTGAAAAACCTTAGGATCCACATCCGGAATCTCTCGGTGGAAATGAATGGAGGCAAAGATGGGTGTGAAGAGATTAATCTGAGTGAGAAATTGTTGAACCCTACTCACAGCCAAGACGTCACTGAGATATCTAAAGAGGTTTGTAAGGTCCTCAGGAGCAAACCCAAATGGGAGCAGACTCTGCTCTCTGATTACCCTTCTTTCAATTTCCACGACCCTTCTTTTTTTCGCGAGCTATTGAAGCAGTTAAACAATGTTTTGCTTTCGTTGAGGTTTTTTCTTTGGCTGAGTTCTCAGCCTGAGTTCTTGCCCCATCCAGTCAGCTGTAACACGCTCTTTGATGCCCTTTTGGAGGCCAAGGCTTGTGTTCCCGCTAAATCTTTTCTTCATTCTTTCGGTTTTAGTCCGGAGCCTGCTTCTTTGGAGAATTACATTCGATGTGTTTGCGAGGGTGGATTGGTTGAGGAAGCTGTTAATGTATTTGATGTGTTAAAGGAGGCTGGATATCGTCCATCCATTGAGACTTGGAACTTTGCTTTCCAGAGTTGTCTTAAGTTTGGGAGGACTGATCTTATGTGGAAACTGTATGCAGAGATGATGGAAACTGGTGTGCAAGCGGATGTGGAGATTGAGACTGTGGGGTATCTTATCCAAGCGCTTTGTAGTGATAACAACGTTTCAAAAGCTTATGAGCTTCTAAGACAGGCTTTAGAAGATGGATTAGCCCCTTCTAATGATGCTTTCAACAAATTGATTTCTTTGTTCTGTGAGGAGAAGAATTATGACAGAGTATCAGAGCTTCTTCACACAATGATAGCCAAGAACCGTAATCCCGATATTTTTACCTATCAGGAAATCATTAACGGGCTCTGCAAGAAACACAGGCAGCTGCAGGCATTTCAGGTTTTTAACGGCCTCAAGGATCGGGGTTATGCCCCTGATATGGTCATGTATACAACAATGATTCATGGCCTGTGTAAGATGAGCTGGCTTGGAGATGCTAGAAAGCTGTGGTTTGAGATGATTGATAAGGGATTTCTTCCAAATGAATATACGTACAACACATTGATTTATGGATTTTGTAAGATTGGTAATTTGGATGAGGCCTTGAAGCTATATAAGGAAATGCATGATAGAGGTTATAAAGAAACCACTCTGAGCTGCAACACAGTGATTGCAGGTTTGTGTCTACATGGAAGGACAGACGAAGCGTACAACTTCTTTCAAGAAATGCCTTGCAAGGACGTAGTTTGCGATGTTGTAACATACAATACCCTGATTCAAGGATTTTGCAGAGAGGGGAAGATACTGCAATGCAGAGACCTATTCAAGGAGTTGCTAGAGAAGGGGTTGCAGCCTTCAACTTCCTCTTATACTCATCTCATTCAAAAGCTTTGTCAAGTGGGTGATGTGCAAGAAGCAAAGAAAATGTGGAATGACATGCATAATAGAGGTCTTCAGCCAATGGTGTGCACTCGCGATCACATCATTAATGGATTATGTGAGCAAGGATGTGCGGTAGAGGGGGTGGAGTGGTTGATGACTATGTTGAAGAGCAATCTCAAGCCTCAAAAGCAAACTTTTGATAAGTTGGTTCAGAGTCTCACTCAAATAGGAGGCCAGTTTAAGATGGTTGTACTCCTGACTAGAAAGTGCGGAGATTGGAAGCTGTTGAACTTGCTTAGAAGTGCCTGTCATCGATGCTTTAAGGTAGATCCGAAGGCTGATTTGGGTCGTAAATTTGCTCAAGTTGTTGGGGTGGACCATCCATCTGCATGA

Coding sequence (CDS)

ATGGCGAATATTACATCTCTAATGATCTCCATTCGCCAAAACTCACGACTTGTGAAAAACCTTAGGATCCACATCCGGAATCTCTCGGTGGAAATGAATGGAGGCAAAGATGGGTGTGAAGAGATTAATCTGAGTGAGAAATTGTTGAACCCTACTCACAGCCAAGACGTCACTGAGATATCTAAAGAGGTTTGTAAGGTCCTCAGGAGCAAACCCAAATGGGAGCAGACTCTGCTCTCTGATTACCCTTCTTTCAATTTCCACGACCCTTCTTTTTTTCGCGAGCTATTGAAGCAGTTAAACAATGTTTTGCTTTCGTTGAGGTTTTTTCTTTGGCTGAGTTCTCAGCCTGAGTTCTTGCCCCATCCAGTCAGCTGTAACACGCTCTTTGATGCCCTTTTGGAGGCCAAGGCTTGTGTTCCCGCTAAATCTTTTCTTCATTCTTTCGGTTTTAGTCCGGAGCCTGCTTCTTTGGAGAATTACATTCGATGTGTTTGCGAGGGTGGATTGGTTGAGGAAGCTGTTAATGTATTTGATGTGTTAAAGGAGGCTGGATATCGTCCATCCATTGAGACTTGGAACTTTGCTTTCCAGAGTTGTCTTAAGTTTGGGAGGACTGATCTTATGTGGAAACTGTATGCAGAGATGATGGAAACTGGTGTGCAAGCGGATGTGGAGATTGAGACTGTGGGGTATCTTATCCAAGCGCTTTGTAGTGATAACAACGTTTCAAAAGCTTATGAGCTTCTAAGACAGGCTTTAGAAGATGGATTAGCCCCTTCTAATGATGCTTTCAACAAATTGATTTCTTTGTTCTGTGAGGAGAAGAATTATGACAGAGTATCAGAGCTTCTTCACACAATGATAGCCAAGAACCGTAATCCCGATATTTTTACCTATCAGGAAATCATTAACGGGCTCTGCAAGAAACACAGGCAGCTGCAGGCATTTCAGGTTTTTAACGGCCTCAAGGATCGGGGTTATGCCCCTGATATGGTCATGTATACAACAATGATTCATGGCCTGTGTAAGATGAGCTGGCTTGGAGATGCTAGAAAGCTGTGGTTTGAGATGATTGATAAGGGATTTCTTCCAAATGAATATACGTACAACACATTGATTTATGGATTTTGTAAGATTGGTAATTTGGATGAGGCCTTGAAGCTATATAAGGAAATGCATGATAGAGGTTATAAAGAAACCACTCTGAGCTGCAACACAGTGATTGCAGGTTTGTGTCTACATGGAAGGACAGACGAAGCGTACAACTTCTTTCAAGAAATGCCTTGCAAGGACGTAGTTTGCGATGTTGTAACATACAATACCCTGATTCAAGGATTTTGCAGAGAGGGGAAGATACTGCAATGCAGAGACCTATTCAAGGAGTTGCTAGAGAAGGGGTTGCAGCCTTCAACTTCCTCTTATACTCATCTCATTCAAAAGCTTTGTCAAGTGGGTGATGTGCAAGAAGCAAAGAAAATGTGGAATGACATGCATAATAGAGGTCTTCAGCCAATGGTGTGCACTCGCGATCACATCATTAATGGATTATGTGAGCAAGGATGTGCGGTAGAGGGGGTGGAGTGGTTGATGACTATGTTGAAGAGCAATCTCAAGCCTCAAAAGCAAACTTTTGATAAGTTGGTTCAGAGTCTCACTCAAATAGGAGGCCAGTTTAAGATGGTTGTACTCCTGACTAGAAAGTGCGGAGATTGGAAGCTGTTGAACTTGCTTAGAAGTGCCTGTCATCGATGCTTTAAGGTAGATCCGAAGGCTGATTTGGGTCGTAAATTTGCTCAAGTTGTTGGGGTGGACCATCCATCTGCATGA

Protein sequence

MANITSLMISIRQNSRLVKNLRIHIRNLSVEMNGGKDGCEEINLSEKLLNPTHSQDVTEISKEVCKVLRSKPKWEQTLLSDYPSFNFHDPSFFRELLKQLNNVLLSLRFFLWLSSQPEFLPHPVSCNTLFDALLEAKACVPAKSFLHSFGFSPEPASLENYIRCVCEGGLVEEAVNVFDVLKEAGYRPSIETWNFAFQSCLKFGRTDLMWKLYAEMMETGVQADVEIETVGYLIQALCSDNNVSKAYELLRQALEDGLAPSNDAFNKLISLFCEEKNYDRVSELLHTMIAKNRNPDIFTYQEIINGLCKKHRQLQAFQVFNGLKDRGYAPDMVMYTTMIHGLCKMSWLGDARKLWFEMIDKGFLPNEYTYNTLIYGFCKIGNLDEALKLYKEMHDRGYKETTLSCNTVIAGLCLHGRTDEAYNFFQEMPCKDVVCDVVTYNTLIQGFCREGKILQCRDLFKELLEKGLQPSTSSYTHLIQKLCQVGDVQEAKKMWNDMHNRGLQPMVCTRDHIINGLCEQGCAVEGVEWLMTMLKSNLKPQKQTFDKLVQSLTQIGGQFKMVVLLTRKCGDWKLLNLLRSACHRCFKVDPKADLGRKFAQVVGVDHPSA
Homology
[Close]
BLAST of Carg20968 vs. NCBI nr
Match: XP_022979328.1 (pentatricopeptide repeat-containing protein At5g18950-like [Cucurbita maxima])

HSP 1 Score: 529.3 bits (1362), Expect = 1.8e-146
Identity = 260/265 (98.11%), Postives = 263/265 (99.25%), Query Frame = 0 

Query: 1   MANITSLMISIRQNSRLVKNLRIHIRNLSVEMNGGKDGCEEINLSEKLLNPTHSQDVTEI 60
           MANITSLMISIRQNSRLVKNLRIHIRNLSVEMNGGKDGCEEINLSEKLLNPTHSQDVTEI
Sbjct: 1   MANITSLMISIRQNSRLVKNLRIHIRNLSVEMNGGKDGCEEINLSEKLLNPTHSQDVTEI 60

Query: 61  SKEVCKVLRSKPKWEQTLLSDYPSFNFHDPSFFRELLKQLNNVLLSLRFFLWLSSQPEFL 120
           SKEVCKV+RSKPKWEQTLLSDYPSFNFHDPSFFRELLKQLNNVLLSLRFFLWLSSQPEFL
Sbjct: 61  SKEVCKVIRSKPKWEQTLLSDYPSFNFHDPSFFRELLKQLNNVLLSLRFFLWLSSQPEFL 120

Query: 121 PHPVSCNTLFDALLEAKACVPAKSFLHSFGFSPEPASLENYIRCVCEGGLVEEAVNVFDV 180
           PHPVSCNTLFDALLEAKACVPAKSFLHSFGFSPEPASLENYIRCVCEGGLVEEAVNVFDV
Sbjct: 121 PHPVSCNTLFDALLEAKACVPAKSFLHSFGFSPEPASLENYIRCVCEGGLVEEAVNVFDV 180

Query: 181 LKEAGYRPSIETWNFAFQSCLKFGRTDLMWKLYAEMMETGVQADVEIETVGYLIQALCSD 240
           LKEAGYRPSIETWNFAFQSCLKFGR DL+WKLYAEMMETGVQADV IETVGYLIQALCSD
Sbjct: 181 LKEAGYRPSIETWNFAFQSCLKFGRIDLIWKLYAEMMETGVQADVGIETVGYLIQALCSD 240

Query: 241 NNVSKAYELLRQALEDGLAPSNDAF 266
           NNV+KAYELLRQALEDGLAPSNDAF
Sbjct: 241 NNVTKAYELLRQALEDGLAPSNDAF 265

[Close]
BLAST of Carg20968 vs. NCBI nr
Match: XP_023527514.1 (pentatricopeptide repeat-containing protein At5g18950-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 528.5 bits (1360), Expect = 3.0e-146
Identity = 260/265 (98.11%), Postives = 262/265 (98.87%), Query Frame = 0 

Query: 1   MANITSLMISIRQNSRLVKNLRIHIRNLSVEMNGGKDGCEEINLSEKLLNPTHSQDVTEI 60
           MANITSLMISIRQNSRLVKNL IHIRNLSVEMNGGKDGCEEINLSEKLLNPTHSQDVTEI
Sbjct: 1   MANITSLMISIRQNSRLVKNLGIHIRNLSVEMNGGKDGCEEINLSEKLLNPTHSQDVTEI 60

Query: 61  SKEVCKVLRSKPKWEQTLLSDYPSFNFHDPSFFRELLKQLNNVLLSLRFFLWLSSQPEFL 120
           SKEVCKV+RSKPKWEQTLLSDYPSFNFHDPSFFRELLKQLNN LLSLRFFLWLSSQPEFL
Sbjct: 61  SKEVCKVIRSKPKWEQTLLSDYPSFNFHDPSFFRELLKQLNNALLSLRFFLWLSSQPEFL 120

Query: 121 PHPVSCNTLFDALLEAKACVPAKSFLHSFGFSPEPASLENYIRCVCEGGLVEEAVNVFDV 180
           PHPVSCNTLFDALLEAKACVPAKSFLHSFGFSPEPASLENYIRCVCEGGLVEEAVNVFDV
Sbjct: 121 PHPVSCNTLFDALLEAKACVPAKSFLHSFGFSPEPASLENYIRCVCEGGLVEEAVNVFDV 180

Query: 181 LKEAGYRPSIETWNFAFQSCLKFGRTDLMWKLYAEMMETGVQADVEIETVGYLIQALCSD 240
           LKEAGYRPSIETWNFAFQSCLKFGRTDL+WKLYAEMMETGVQADV IETVGYLIQALCSD
Sbjct: 181 LKEAGYRPSIETWNFAFQSCLKFGRTDLIWKLYAEMMETGVQADVGIETVGYLIQALCSD 240

Query: 241 NNVSKAYELLRQALEDGLAPSNDAF 266
           NNVSKAYELLRQALEDGLAPSNDAF
Sbjct: 241 NNVSKAYELLRQALEDGLAPSNDAF 265

[Close]
BLAST of Carg20968 vs. NCBI nr
Match: XP_022924328.1 (pentatricopeptide repeat-containing protein At5g18950-like [Cucurbita moschata] >XP_022924329.1 pentatricopeptide repeat-containing protein At5g18950-like [Cucurbita moschata])

HSP 1 Score: 526.2 bits (1354), Expect = 1.5e-145
Identity = 259/265 (97.74%), Postives = 262/265 (98.87%), Query Frame = 0 

Query: 1   MANITSLMISIRQNSRLVKNLRIHIRNLSVEMNGGKDGCEEINLSEKLLNPTHSQDVTEI 60
           MANITSLMISIRQNSRLVKNL IHIRNLSVEMNGGKDGCEEINLSEKLLNPTH QDVTEI
Sbjct: 1   MANITSLMISIRQNSRLVKNLGIHIRNLSVEMNGGKDGCEEINLSEKLLNPTHCQDVTEI 60

Query: 61  SKEVCKVLRSKPKWEQTLLSDYPSFNFHDPSFFRELLKQLNNVLLSLRFFLWLSSQPEFL 120
           SKEVCKV+RSKPKWEQTLLSDYPSFNFHDPSFFRELLKQLNNVLLSLRFFLWLSSQPEFL
Sbjct: 61  SKEVCKVIRSKPKWEQTLLSDYPSFNFHDPSFFRELLKQLNNVLLSLRFFLWLSSQPEFL 120

Query: 121 PHPVSCNTLFDALLEAKACVPAKSFLHSFGFSPEPASLENYIRCVCEGGLVEEAVNVFDV 180
           PHPVSCNTLFDALLEAKACVPAKSFLHSFGFSPEPASLENYIRCVCEGGLVEEAVNVFDV
Sbjct: 121 PHPVSCNTLFDALLEAKACVPAKSFLHSFGFSPEPASLENYIRCVCEGGLVEEAVNVFDV 180

Query: 181 LKEAGYRPSIETWNFAFQSCLKFGRTDLMWKLYAEMMETGVQADVEIETVGYLIQALCSD 240
           LKEAGYRPSIETWNFAFQSCLKFGRTDL+WKLYAEMMETGVQA+V IETVGYLIQALCSD
Sbjct: 181 LKEAGYRPSIETWNFAFQSCLKFGRTDLIWKLYAEMMETGVQANVGIETVGYLIQALCSD 240

Query: 241 NNVSKAYELLRQALEDGLAPSNDAF 266
           NNVSKAYELLRQALEDGLAPSNDAF
Sbjct: 241 NNVSKAYELLRQALEDGLAPSNDAF 265

[Close]
BLAST of Carg20968 vs. NCBI nr
Match: XP_008437970.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g18950 [Cucumis melo])

HSP 1 Score: 461.1 bits (1185), Expect = 6.0e-126
Identity = 223/265 (84.15%), Postives = 240/265 (90.57%), Query Frame = 0 

Query: 1   MANITSLMISIRQNSRLVKNLRIHIRNLSVEMNGGKDGCEEINLSEKLLNPTHSQDVTEI 60
           M N+TSLMISIRQNSR VK+LRIHIRNLSVE NGG +G EEI  SEKLLN TH +DV+EI
Sbjct: 1   MVNLTSLMISIRQNSRFVKSLRIHIRNLSVETNGGNNGREEIESSEKLLNLTHRKDVSEI 60

Query: 61  SKEVCKVLRSKPKWEQTLLSDYPSFNFHDPSFFRELLKQLNNVLLSLRFFLWLSSQPEFL 120
           + EV KV+RSKP+WEQ+LLSDYPSFNFHDPSFF ELLKQLNNV LSLRFFLWLSSQPEFL
Sbjct: 61  AAEVGKVIRSKPRWEQSLLSDYPSFNFHDPSFFSELLKQLNNVFLSLRFFLWLSSQPEFL 120

Query: 121 PHPVSCNTLFDALLEAKACVPAKSFLHSFGFSPEPASLENYIRCVCEGGLVEEAVNVFDV 180
           PHPVSCN LFDALLEAKAC PAKSFLHSF FSPEPASLENYIRCVCEGG+VEEAV +FDV
Sbjct: 121 PHPVSCNKLFDALLEAKACAPAKSFLHSFDFSPEPASLENYIRCVCEGGIVEEAVKIFDV 180

Query: 181 LKEAGYRPSIETWNFAFQSCLKFGRTDLMWKLYAEMMETGVQADVEIETVGYLIQALCSD 240
           LKEAGY PS+ETWNFAFQSCLKFGRTDL+WKLY EMME GVQ DV+IETVGYLIQA C+D
Sbjct: 181 LKEAGYHPSVETWNFAFQSCLKFGRTDLIWKLYEEMMEAGVQKDVDIETVGYLIQAFCND 240

Query: 241 NNVSKAYELLRQALEDGLAPSNDAF 266
           N VS+AYE+LRQ LEDGLAP NDAF
Sbjct: 241 NKVSRAYEILRQVLEDGLAPCNDAF 265

[Close]
BLAST of Carg20968 vs. NCBI nr
Match: KGN56465.1 (hypothetical protein Csa_3G120440 [Cucumis sativus])

HSP 1 Score: 454.1 bits (1167), Expect = 7.3e-124
Identity = 222/265 (83.77%), Postives = 239/265 (90.19%), Query Frame = 0 

Query: 1   MANITSLMISIRQNSRLVKNLRIHIRNLSVEMNGGKDGCEEINLSEKLLNPTHSQDVTEI 60
           M N+TSLMISIRQNSR VKNLRIHIRNLSVE NGG +G EEI  SEKLLN T  +DV+EI
Sbjct: 1   MVNLTSLMISIRQNSRFVKNLRIHIRNLSVETNGGNNGREEIESSEKLLNLTQRKDVSEI 60

Query: 61  SKEVCKVLRSKPKWEQTLLSDYPSFNFHDPSFFRELLKQLNNVLLSLRFFLWLSSQPEFL 120
           + EV KV+RSKP+WEQ+LLSDYPSFNFHDPSFF ELLKQLNNV LSLRFFLWLSSQPEFL
Sbjct: 61  AAEVGKVIRSKPRWEQSLLSDYPSFNFHDPSFFSELLKQLNNVFLSLRFFLWLSSQPEFL 120

Query: 121 PHPVSCNTLFDALLEAKACVPAKSFLHSFGFSPEPASLENYIRCVCEGGLVEEAVNVFDV 180
           PHPVSCN LFDALLEAKACVPAKSFL+SF FSPEPASLENYIRCVCEGGLVEEAV  FD+
Sbjct: 121 PHPVSCNKLFDALLEAKACVPAKSFLYSFEFSPEPASLENYIRCVCEGGLVEEAVYTFDM 180

Query: 181 LKEAGYRPSIETWNFAFQSCLKFGRTDLMWKLYAEMMETGVQADVEIETVGYLIQALCSD 240
           LKEAGYRP +ETWNFAFQSCLKFGRTDL+WKLY  MMETGVQ DV+IETVGYLIQA C+D
Sbjct: 181 LKEAGYRPYVETWNFAFQSCLKFGRTDLIWKLYEGMMETGVQKDVDIETVGYLIQAFCND 240

Query: 241 NNVSKAYELLRQALEDGLAPSNDAF 266
           N VS+AYE+LRQ+LEDGL P NDAF
Sbjct: 241 NKVSRAYEILRQSLEDGLTPCNDAF 265

[Close]
BLAST of Carg20968 vs. TAIR10
Match: AT5G18950.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 206.1 bits (523), Expect = 6.3e-53
Identity = 117/260 (45.00%), Postives = 159/260 (61.15%), Query Frame = 0 

Query: 1   MANITSLMISIRQNSRLVKNLRIHIRNLSVEMNGGKDGCEEINLSEKLLNPTHSQDVTEI 60
           M+   S +IS  +N R  KN    IR+L+VE       CE     +K      +   TE+
Sbjct: 1   MSRGQSYLISFFRN-RTRKNPNTQIRSLTVESR----DCESKPDEQK-----SAVSYTEM 60

Query: 61  SKEVCKVLRSKPKWEQTLLSDYPSFNFHDPSFFRELLKQLNNVLLSLRFFLWLSSQPEFL 120
           +K V  ++R + +W+QTL+SD+PSF+F DP FF ELLK  NNVL SL FF WL S  ++ 
Sbjct: 61  AKTVSTIMRERQRWQQTLVSDFPSFDFADPLFFGELLKSQNNVLFSLWFFRWLCSNYDYT 120

Query: 121 PHPVSCNTLFDALLEAKACVPAKSFLHSFGFSPEPASLENYIRCVCEGGLVEEAVNVFDV 180
           P PVS N LF ALL+ KA   AKSFL + GF PEP  LE Y++C+ E GLVEEA+ V++V
Sbjct: 121 PGPVSLNILFGALLDGKAVKAAKSFLDTTGFKPEPTLLEQYVKCLSEEGLVEEAIEVYNV 180

Query: 181 LKEAGYRPSIETWNFAFQSCLKFGRTDLMWKLYAEMMETGVQADVEIETVGYLIQALCSD 240
           LK+ G   S+ T N     CLK  + D  W+L+ EM    V+++ + E +  LI+ALC  
Sbjct: 181 LKDMGISSSVVTCNSVLLGCLKARKLDRFWELHKEM----VESEFDSERIRCLIRALCDG 240

Query: 241 NNVSKAYELLRQALEDGLAP 261
            +VS+ YELL+Q L+ GL P
Sbjct: 241 GDVSEGYELLKQGLKQGLDP 246

[Close]
BLAST of Carg20968 vs. TAIR10
Match: AT1G02060.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 51.2 bits (121), Expect = 2.6e-06
Identity = 44/171 (25.73%), Postives = 76/171 (44.44%), Query Frame = 0 

Query: 58  TEISKEVCKVLRSKPKWEQTLLSDYPSFNFHDPSFFRELLKQLNNVLL---SLRFFLWLS 117
           +++++ + + + S P W   L S   S +         +L+ L  + +    LRFF W+S
Sbjct: 34  SKLARSLARAVNSNP-WSDELESSLSSLHPSQTISRTTVLQTLRLIKVPADGLRFFDWVS 93

Query: 118 SQPEFLPHPVSCNTLFDALLEAKACVPAKSFLHSFG------FSPEPASLENYIRCVCEG 177
           ++  F     S   + + L  A+    A++FL S           +     + IR     
Sbjct: 94  NK-GFSHKEQSFFLMLEFLGRARNLNVARNFLFSIERRSNGCVKLQDRYFNSLIRSYGNA 153

Query: 178 GLVEEAVNVFDVLKEAGYRPSIETWNFAFQSCLKFGRTDLMWKLYAEMMET 220
           GL +E+V +F  +K+ G  PS+ T+N      LK GRT +   L+ EM  T
Sbjct: 154 GLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMRRT 202

[Close]
BLAST of Carg20968 vs. TAIR10
Match: AT2G15630.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 50.1 bits (118), Expect = 5.8e-06
Identity = 28/101 (27.72%), Postives = 47/101 (46.53%), Query Frame = 0 

Query: 125 SCNTLFDALLEAKACVPAKSFLHSFGFSPEPASLENYIRCVCEGGLVEEAVNVFDVLKEA 184
           S   LFD L+ A   +  KS +            +  +RC C+  +V+EA+  F ++KE 
Sbjct: 135 SIRNLFDELVLAHDRLETKSTI----------LFDLLVRCCCQLRMVDEAIECFYLMKEK 194

Query: 185 GYRPSIETWNFAFQSCLKFGRTDLMWKLYAEMMETGVQADV 226
           G+ P  ET N       +  R +  W  YA+M    ++++V
Sbjct: 195 GFYPKTETCNHILTLLSRLNRIENAWVFYADMYRMEIKSNV 225

[Close]
BLAST of Carg20968 vs. TAIR10
Match: AT5G08310.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 47.8 bits (112), Expect = 2.9e-05
Identity = 42/160 (26.25%), Postives = 71/160 (44.38%), Query Frame = 0 

Query: 105 LSLRFFLWLSSQPEFLPHPVSCNTLFDALLEAKACVPAKSF----LHSFGFSPEPASLEN 164
           L+  FF W S Q  +     + N +   L  A+     K+     L+S  F   P +   
Sbjct: 88  LAYLFFNWASKQEGYRNDMYAYNAMASILSRARQNASLKALVVDVLNSRCFM-SPGAFGF 147

Query: 165 YIRCVCEGGLVEEAVNVFDVLKEAGY-RPSIETWNFAFQSCLKFGRT--DLMWKLYAEMM 224
           +IRC+   GLV+EA +VFD ++E G   P+  T+N   ++  K   +  +L+     EM 
Sbjct: 148 FIRCLGNAGLVDEASSVFDRVREMGLCVPNAYTYNCLLEAISKSNSSSVELVEARLKEMR 207

Query: 225 ETGVQADVEIETVGYLIQALCSDNNVSKAYELLRQALEDG 258
           + G   D    T+  ++Q  C+     +A  +  + L  G
Sbjct: 208 DCGFHFDK--FTLTPVLQVYCNTGKSERALSVFNEILSRG 244

[Close]
BLAST of Carg20968 vs. TAIR10
Match: AT2G17670.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 45.1 bits (105), Expect = 1.9e-04
Identity = 38/149 (25.50%), Postives = 64/149 (42.95%), Query Frame = 0 

Query: 113 LSSQPEFLPHPVSCNTLFDALLEAKACVPAKS---------FLHSFGFSPEPASLENYIR 172
           L SQP F P      + F  LL      P  S          + + G  P+  + +  +R
Sbjct: 112 LKSQPNFRPG----RSTFLILLSHACRAPDSSISNVHRVLNLMVNNGLEPDQVTTDIAVR 171

Query: 173 CVCEGGLVEEAVNVFDVLKEAGYRPSIETWNFAFQSCLKFGRTDLMWKLYAEMMETGVQA 232
            +CE G V+EA ++   L E    P   T+NF  +   K     ++++   EM +     
Sbjct: 172 SLCETGRVDEAKDLMKELTEKHSPPDTYTYNFLLKHLCKCKDLHVVYEFVDEMRD---DF 231

Query: 233 DVEIETVGY--LIQALCSDNNVSKAYELL 251
           DV+ + V +  LI  +C+  N+ +A  L+
Sbjct: 232 DVKPDLVSFTILIDNVCNSKNLREAMYLV 253

[Close]
BLAST of Carg20968 vs. Swiss-Prot
Match: sp|Q8GYM2|PP393_ARATH (Pentatricopeptide repeat-containing protein At5g18950 OS=Arabidopsis thaliana OX=3702 GN=At5g18950 PE=2 SV=2)

HSP 1 Score: 206.1 bits (523), Expect = 1.1e-51
Identity = 117/260 (45.00%), Postives = 159/260 (61.15%), Query Frame = 0 

Query: 1   MANITSLMISIRQNSRLVKNLRIHIRNLSVEMNGGKDGCEEINLSEKLLNPTHSQDVTEI 60
           M+   S +IS  +N R  KN    IR+L+VE       CE     +K      +   TE+
Sbjct: 1   MSRGQSYLISFFRN-RTRKNPNTQIRSLTVESR----DCESKPDEQK-----SAVSYTEM 60

Query: 61  SKEVCKVLRSKPKWEQTLLSDYPSFNFHDPSFFRELLKQLNNVLLSLRFFLWLSSQPEFL 120
           +K V  ++R + +W+QTL+SD+PSF+F DP FF ELLK  NNVL SL FF WL S  ++ 
Sbjct: 61  AKTVSTIMRERQRWQQTLVSDFPSFDFADPLFFGELLKSQNNVLFSLWFFRWLCSNYDYT 120

Query: 121 PHPVSCNTLFDALLEAKACVPAKSFLHSFGFSPEPASLENYIRCVCEGGLVEEAVNVFDV 180
           P PVS N LF ALL+ KA   AKSFL + GF PEP  LE Y++C+ E GLVEEA+ V++V
Sbjct: 121 PGPVSLNILFGALLDGKAVKAAKSFLDTTGFKPEPTLLEQYVKCLSEEGLVEEAIEVYNV 180

Query: 181 LKEAGYRPSIETWNFAFQSCLKFGRTDLMWKLYAEMMETGVQADVEIETVGYLIQALCSD 240
           LK+ G   S+ T N     CLK  + D  W+L+ EM    V+++ + E +  LI+ALC  
Sbjct: 181 LKDMGISSSVVTCNSVLLGCLKARKLDRFWELHKEM----VESEFDSERIRCLIRALCDG 240

Query: 241 NNVSKAYELLRQALEDGLAP 261
            +VS+ YELL+Q L+ GL P
Sbjct: 241 GDVSEGYELLKQGLKQGLDP 246

[Close]
BLAST of Carg20968 vs. Swiss-Prot
Match: sp|O81908|PPR2_ARATH (Pentatricopeptide repeat-containing protein At1g02060, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g02060 PE=2 SV=2)

HSP 1 Score: 51.2 bits (121), Expect = 4.7e-05
Identity = 44/171 (25.73%), Postives = 76/171 (44.44%), Query Frame = 0 

Query: 58  TEISKEVCKVLRSKPKWEQTLLSDYPSFNFHDPSFFRELLKQLNNVLL---SLRFFLWLS 117
           +++++ + + + S P W   L S   S +         +L+ L  + +    LRFF W+S
Sbjct: 34  SKLARSLARAVNSNP-WSDELESSLSSLHPSQTISRTTVLQTLRLIKVPADGLRFFDWVS 93

Query: 118 SQPEFLPHPVSCNTLFDALLEAKACVPAKSFLHSFG------FSPEPASLENYIRCVCEG 177
           ++  F     S   + + L  A+    A++FL S           +     + IR     
Sbjct: 94  NK-GFSHKEQSFFLMLEFLGRARNLNVARNFLFSIERRSNGCVKLQDRYFNSLIRSYGNA 153

Query: 178 GLVEEAVNVFDVLKEAGYRPSIETWNFAFQSCLKFGRTDLMWKLYAEMMET 220
           GL +E+V +F  +K+ G  PS+ T+N      LK GRT +   L+ EM  T
Sbjct: 154 GLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMRRT 202

[Close]
BLAST of Carg20968 vs. Swiss-Prot
Match: sp|Q9ZQF1|PP152_ARATH (Pentatricopeptide repeat-containing protein At2g15630, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g15630 PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.0e-04
Identity = 28/101 (27.72%), Postives = 47/101 (46.53%), Query Frame = 0 

Query: 125 SCNTLFDALLEAKACVPAKSFLHSFGFSPEPASLENYIRCVCEGGLVEEAVNVFDVLKEA 184
           S   LFD L+ A   +  KS +            +  +RC C+  +V+EA+  F ++KE 
Sbjct: 135 SIRNLFDELVLAHDRLETKSTI----------LFDLLVRCCCQLRMVDEAIECFYLMKEK 194

Query: 185 GYRPSIETWNFAFQSCLKFGRTDLMWKLYAEMMETGVQADV 226
           G+ P  ET N       +  R +  W  YA+M    ++++V
Sbjct: 195 GFYPKTETCNHILTLLSRLNRIENAWVFYADMYRMEIKSNV 225

[Close]
BLAST of Carg20968 vs. Swiss-Prot
Match: sp|P0C8Q6|PP368_ARATH (Putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g08310 PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 5.2e-04
Identity = 42/160 (26.25%), Postives = 71/160 (44.38%), Query Frame = 0 

Query: 105 LSLRFFLWLSSQPEFLPHPVSCNTLFDALLEAKACVPAKSF----LHSFGFSPEPASLEN 164
           L+  FF W S Q  +     + N +   L  A+     K+     L+S  F   P +   
Sbjct: 88  LAYLFFNWASKQEGYRNDMYAYNAMASILSRARQNASLKALVVDVLNSRCFM-SPGAFGF 147

Query: 165 YIRCVCEGGLVEEAVNVFDVLKEAGY-RPSIETWNFAFQSCLKFGRT--DLMWKLYAEMM 224
           +IRC+   GLV+EA +VFD ++E G   P+  T+N   ++  K   +  +L+     EM 
Sbjct: 148 FIRCLGNAGLVDEASSVFDRVREMGLCVPNAYTYNCLLEAISKSNSSSVELVEARLKEMR 207

Query: 225 ETGVQADVEIETVGYLIQALCSDNNVSKAYELLRQALEDG 258
           + G   D    T+  ++Q  C+     +A  +  + L  G
Sbjct: 208 DCGFHFDK--FTLTPVLQVYCNTGKSERALSVFNEILSRG 244

[Close]
BLAST of Carg20968 vs. TrEMBL
Match: tr|A0A1S3AVU1|A0A1S3AVU1_CUCME (pentatricopeptide repeat-containing protein At5g18950 OS=Cucumis melo OX=3656 GN=LOC103483227 PE=4 SV=1)

HSP 1 Score: 461.1 bits (1185), Expect = 3.9e-126
Identity = 223/265 (84.15%), Postives = 240/265 (90.57%), Query Frame = 0 

Query: 1   MANITSLMISIRQNSRLVKNLRIHIRNLSVEMNGGKDGCEEINLSEKLLNPTHSQDVTEI 60
           M N+TSLMISIRQNSR VK+LRIHIRNLSVE NGG +G EEI  SEKLLN TH +DV+EI
Sbjct: 1   MVNLTSLMISIRQNSRFVKSLRIHIRNLSVETNGGNNGREEIESSEKLLNLTHRKDVSEI 60

Query: 61  SKEVCKVLRSKPKWEQTLLSDYPSFNFHDPSFFRELLKQLNNVLLSLRFFLWLSSQPEFL 120
           + EV KV+RSKP+WEQ+LLSDYPSFNFHDPSFF ELLKQLNNV LSLRFFLWLSSQPEFL
Sbjct: 61  AAEVGKVIRSKPRWEQSLLSDYPSFNFHDPSFFSELLKQLNNVFLSLRFFLWLSSQPEFL 120

Query: 121 PHPVSCNTLFDALLEAKACVPAKSFLHSFGFSPEPASLENYIRCVCEGGLVEEAVNVFDV 180
           PHPVSCN LFDALLEAKAC PAKSFLHSF FSPEPASLENYIRCVCEGG+VEEAV +FDV
Sbjct: 121 PHPVSCNKLFDALLEAKACAPAKSFLHSFDFSPEPASLENYIRCVCEGGIVEEAVKIFDV 180

Query: 181 LKEAGYRPSIETWNFAFQSCLKFGRTDLMWKLYAEMMETGVQADVEIETVGYLIQALCSD 240
           LKEAGY PS+ETWNFAFQSCLKFGRTDL+WKLY EMME GVQ DV+IETVGYLIQA C+D
Sbjct: 181 LKEAGYHPSVETWNFAFQSCLKFGRTDLIWKLYEEMMEAGVQKDVDIETVGYLIQAFCND 240

Query: 241 NNVSKAYELLRQALEDGLAPSNDAF 266
           N VS+AYE+LRQ LEDGLAP NDAF
Sbjct: 241 NKVSRAYEILRQVLEDGLAPCNDAF 265

[Close]
BLAST of Carg20968 vs. TrEMBL
Match: tr|A0A0A0L3A3|A0A0A0L3A3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G120440 PE=4 SV=1)

HSP 1 Score: 454.1 bits (1167), Expect = 4.8e-124
Identity = 222/265 (83.77%), Postives = 239/265 (90.19%), Query Frame = 0 

Query: 1   MANITSLMISIRQNSRLVKNLRIHIRNLSVEMNGGKDGCEEINLSEKLLNPTHSQDVTEI 60
           M N+TSLMISIRQNSR VKNLRIHIRNLSVE NGG +G EEI  SEKLLN T  +DV+EI
Sbjct: 1   MVNLTSLMISIRQNSRFVKNLRIHIRNLSVETNGGNNGREEIESSEKLLNLTQRKDVSEI 60

Query: 61  SKEVCKVLRSKPKWEQTLLSDYPSFNFHDPSFFRELLKQLNNVLLSLRFFLWLSSQPEFL 120
           + EV KV+RSKP+WEQ+LLSDYPSFNFHDPSFF ELLKQLNNV LSLRFFLWLSSQPEFL
Sbjct: 61  AAEVGKVIRSKPRWEQSLLSDYPSFNFHDPSFFSELLKQLNNVFLSLRFFLWLSSQPEFL 120

Query: 121 PHPVSCNTLFDALLEAKACVPAKSFLHSFGFSPEPASLENYIRCVCEGGLVEEAVNVFDV 180
           PHPVSCN LFDALLEAKACVPAKSFL+SF FSPEPASLENYIRCVCEGGLVEEAV  FD+
Sbjct: 121 PHPVSCNKLFDALLEAKACVPAKSFLYSFEFSPEPASLENYIRCVCEGGLVEEAVYTFDM 180

Query: 181 LKEAGYRPSIETWNFAFQSCLKFGRTDLMWKLYAEMMETGVQADVEIETVGYLIQALCSD 240
           LKEAGYRP +ETWNFAFQSCLKFGRTDL+WKLY  MMETGVQ DV+IETVGYLIQA C+D
Sbjct: 181 LKEAGYRPYVETWNFAFQSCLKFGRTDLIWKLYEGMMETGVQKDVDIETVGYLIQAFCND 240

Query: 241 NNVSKAYELLRQALEDGLAPSNDAF 266
           N VS+AYE+LRQ+LEDGL P NDAF
Sbjct: 241 NKVSRAYEILRQSLEDGLTPCNDAF 265

[Close]
BLAST of Carg20968 vs. TrEMBL
Match: tr|A0A2N9IWQ4|A0A2N9IWQ4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56890 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 7.1e-75
Identity = 151/261 (57.85%), Postives = 186/261 (71.26%), Query Frame = 0 

Query: 5   TSLMISIRQNSRLVKNLRIHIRNLSVEMNGGKDGCEEINLSEKLLNPTHSQDVTEISKEV 64
           +S+++ IRQN R  +N    IRNL++E    KDG  + N + +  +     D  EI KEV
Sbjct: 6   SSILVFIRQNPRTRQNPNTQIRNLALET---KDGDFKPNPNHE-SSQNAQNDFLEIVKEV 65

Query: 65  CKVLRSKPKWEQTLLSDYPSFNFHDPSFFRELLKQLNNVLLSLRFFLWLSSQPEFLPHPV 124
            ++ R+KP+WEQ+LLSD+PSFNF DP FF EL++  NNVLLSLRFF WL S   F P P+
Sbjct: 66  SRITRTKPRWEQSLLSDFPSFNFTDPQFFYELIRNQNNVLLSLRFFHWLCSFNGFEPDPL 125

Query: 125 SCNTLFDALLEAKACVPAKSFLHSFGFSPEPASLENYIRCVCEGGLVEEAVNVFDVLKEA 184
           S N +FDAL+EAKAC  AKSFL S GF PEPASLE+YIRC+CEGGLVEEA++VFD LK  
Sbjct: 126 SLNAIFDALVEAKACNAAKSFLDSTGFKPEPASLEHYIRCLCEGGLVEEALDVFDRLKGI 185

Query: 185 GYRPSIETWNFAFQSCLKFGRTDLMWKLYAEMMETGVQADVEIETVGYLIQALCSDNNVS 244
              P+IETWN A   CLK GRT+L+WKLY EMME+ V   V++ETV YLI+A C D +VS
Sbjct: 186 EVCPAIETWNSALSGCLKVGRTELVWKLYKEMMESSVVEKVDVETVEYLIRAFCEDKDVS 245

Query: 245 KAYELLRQALEDGLAPSNDAF 266
           K YELL+Q L DG  P N AF
Sbjct: 246 KGYELLQQVLGDGSVPGNAAF 262

[Close]
BLAST of Carg20968 vs. TrEMBL
Match: tr|A0A2I4F2U4|A0A2I4F2U4_9ROSI (pentatricopeptide repeat-containing protein At5g18950 OS=Juglans regia OX=51240 GN=LOC108994972 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 1.5e-72
Identity = 153/268 (57.09%), Postives = 178/268 (66.42%), Query Frame = 0 

Query: 1   MANITSLMISIRQNSRLVKNLRIHIRNLSVEMNGGKDGCEEINLSEKLLNPTHS------ 60
           MA   S +  IRQN R   N    IRNL++E+  G+  C      E   NP H       
Sbjct: 1   MARAPSPIFFIRQNPRTSPNPNTQIRNLALEI--GEADCRG---GEIKPNPDHEPSRNAH 60

Query: 61  QDVTEISKEVCKVLRSKPKWEQTLLSDYPSFNFHDPSFFRELLKQLNNVLLSLRFFLWLS 120
            + TEI+KEVCK+ R++P+WEQTL+SD+PSFNF DP FF EL+K  NNVLLSLRFF WL 
Sbjct: 61  NEFTEIAKEVCKITRTRPRWEQTLVSDFPSFNFSDPRFFNELIKHQNNVLLSLRFFHWLC 120

Query: 121 SQPEFLPHPVSCNTLFDALLEAKACVPAKSFLHSFGFSPEPASLENYIRCVCEGGLVEEA 180
           S   F P P+S NTLF+AL+EAKAC  AK FL   GF PE ASLE Y RC+CE GLVEEA
Sbjct: 121 SCDGFSPDPLSLNTLFNALVEAKACSVAKDFLDYTGFKPERASLECYARCLCEVGLVEEA 180

Query: 181 VNVFDVLKEAGYRPSIETWNFAFQSCLKFGRTDLMWKLYAEMMETGVQADVEIETVGYLI 240
           ++VFD L+  G  PSI TWN A    LK  RTDL+WKLY EMME+ V A V++ETVGYLI
Sbjct: 181 LDVFDRLRGDGINPSIATWNSALSGFLKVRRTDLVWKLYREMMESNVAAKVDVETVGYLI 240

Query: 241 QALCSDNNVSKAYELLRQALEDGLAPSN 263
           QA C D  V K  ELLRQ LEDG  P N
Sbjct: 241 QAFCEDGKVPKGNELLRQVLEDGFDPGN 263

[Close]
BLAST of Carg20968 vs. TrEMBL
Match: tr|A0A2H5N7E7|A0A2H5N7E7_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_020500 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 8.9e-70
Identity = 138/253 (54.55%), Postives = 173/253 (68.38%), Query Frame = 0 

Query: 6   SLMISIRQNSRLVKNLRIHIRNLSVEMNGGKDGCEEINLSEKLLNPTHSQDVTEISKEVC 65
           S++  +RQN R+ +N    +RNLS+E    +                  Q  TEI+K+VC
Sbjct: 18  SVLTILRQNPRIFQNPNTQLRNLSIETKESQ------------------QLYTEIAKQVC 77

Query: 66  KVLRSKPKWEQTLLSDYPSFNFHDPSFFRELLKQLNNVLLSLRFFLWLSSQPEFLPHPVS 125
           K+ R+KP+WEQTLLSD+PSFNF+DP FFRE LKQ NN+LLS+RFF WL S   F P   S
Sbjct: 78  KITRTKPRWEQTLLSDFPSFNFNDPLFFREFLKQQNNMLLSIRFFQWLHSHYGFSPDLDS 137

Query: 126 CNTLFDALLEAKACVPAKSFLHSFGFSPEPASLENYIRCVCEGGLVEEAVNVFDVLKEAG 185
           CN LFD+L+EA+A   A  FL   GFSP P SLE YI+C+CE G++EEA  VF  LKE G
Sbjct: 138 CNVLFDSLVEARAFKVAMDFLDITGFSPNPNSLELYIQCLCESGMIEEAFRVFSKLKEMG 197

Query: 186 YRPSIETWNFAFQSCLKFGRTDLMWKLYAEMMETGVQADVEIETVGYLIQALCSDNNVSK 245
              SI+TWN A   C+K  RTDL+WKLY +M+E+G+ ADV+ ET+GYLIQA C+D  VS+
Sbjct: 198 VFGSIKTWNSALLGCIKIDRTDLVWKLYHDMIESGIVADVDAETIGYLIQAFCNDGKVSE 252

Query: 246 AYELLRQALEDGL 259
            YELLRQ LEDGL
Sbjct: 258 GYELLRQVLEDGL 252

The following BLAST results are available for this feature:
BLAST of Carg20968 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022979328.11.8e-14698.11pentatricopeptide repeat-containing protein At5g18950-like [Cucurbita maxima][more]
XP_023527514.13.0e-14698.11pentatricopeptide repeat-containing protein At5g18950-like [Cucurbita pepo subsp... [more]
XP_022924328.11.5e-14597.74pentatricopeptide repeat-containing protein At5g18950-like [Cucurbita moschata] ... [more]
XP_008437970.16.0e-12684.15PREDICTED: pentatricopeptide repeat-containing protein At5g18950 [Cucumis melo][more]
KGN56465.17.3e-12483.77hypothetical protein Csa_3G120440 [Cucumis sativus][more]
BLAST of Carg20968 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G18950.16.3e-5345.00Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G02060.12.6e-0625.73Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT2G15630.15.8e-0627.72Pentatricopeptide repeat (PPR) superfamily protein[more]
AT5G08310.12.9e-0526.25Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT2G17670.11.9e-0425.50Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of Carg20968 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8GYM2|PP393_ARATH1.1e-5145.00Pentatricopeptide repeat-containing protein At5g18950 OS=Arabidopsis thaliana OX... [more]
sp|O81908|PPR2_ARATH4.7e-0525.73Pentatricopeptide repeat-containing protein At1g02060, chloroplastic OS=Arabidop... [more]
sp|Q9ZQF1|PP152_ARATH1.0e-0427.72Pentatricopeptide repeat-containing protein At2g15630, mitochondrial OS=Arabidop... [more]
sp|P0C8Q6|PP368_ARATH5.2e-0426.25Putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS... [more]
BLAST of Carg20968 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3AVU1|A0A1S3AVU1_CUCME3.9e-12684.15pentatricopeptide repeat-containing protein At5g18950 OS=Cucumis melo OX=3656 GN... [more]
tr|A0A0A0L3A3|A0A0A0L3A3_CUCSA4.8e-12483.77Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G120440 PE=4 SV=1[more]
tr|A0A2N9IWQ4|A0A2N9IWQ4_FAGSY7.1e-7557.85Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56890 PE=4 SV=1[more]
tr|A0A2I4F2U4|A0A2I4F2U4_9ROSI1.5e-7257.09pentatricopeptide repeat-containing protein At5g18950 OS=Juglans regia OX=51240 ... [more]
tr|A0A2H5N7E7|A0A2H5N7E7_CITUN8.9e-7054.55Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_020500 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20968-RACarg20968-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 330..379
e-value: 1.1E-14
score: 54.2
coord: 436..484
e-value: 2.9E-15
score: 56.0
coord: 264..309
e-value: 6.2E-9
score: 35.8
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 231..258
e-value: 0.12
score: 12.6
coord: 162..185
e-value: 0.61
score: 10.4
coord: 192..220
e-value: 0.36
score: 11.1
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 333..367
e-value: 5.2E-9
score: 33.7
coord: 368..398
e-value: 3.6E-11
score: 40.5
coord: 264..296
e-value: 0.0025
score: 15.9
coord: 404..437
e-value: 3.5E-7
score: 28.0
coord: 438..471
e-value: 5.5E-9
score: 33.7
coord: 192..224
e-value: 3.0E-4
score: 18.8
coord: 474..505
e-value: 3.7E-7
score: 27.9
coord: 232..261
e-value: 0.0026
score: 15.8
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 401..428
e-value: 3.9E-7
score: 29.6
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 471..505
score: 11.772
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 506..540
score: 7.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 154..188
score: 8.934
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 366..400
score: 13.954
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 436..470
score: 13.658
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 189..223
score: 9.536
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 261..295
score: 8.835
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 401..435
score: 9.778
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 296..330
score: 10.567
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 226..260
score: 8.955
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 331..365
score: 11.926
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 351..465
e-value: 1.6E-34
score: 121.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 237..350
e-value: 8.0E-25
score: 90.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 466..561
e-value: 8.1E-18
score: 66.4
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 22..555
NoneNo IPR availablePANTHERPTHR24015:SF848SUBFAMILY NOT NAMEDcoord: 22..555
NoneNo IPR availableSUPERFAMILYSSF81901HCP-likecoord: 239..293
coord: 364..467

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg20968Cla021194Watermelon (97103) v1carwmB0487
Carg20968Csa3G120440Cucumber (Chinese Long) v2carcuB0522
Carg20968MELO3C006065Melon (DHL92) v3.5.1carmeB0497
Carg20968ClCG05G001120Watermelon (Charleston Gray)carwcgB0474
Carg20968CSPI03G08330Wild cucumber (PI 183967)carcpiB0529
Carg20968Cucsa.258850Cucumber (Gy14) v1carcgyB0564
Carg20968CmaCh14G020780Cucurbita maxima (Rimu)carcmaB0683
Carg20968CmoCh14G021360Cucurbita moschata (Rifu)carcmoB0664
Carg20968Lsi05G020850Bottle gourd (USVL1VR-Ls)carlsiB445
Carg20968Cp4.1LG03g16420Cucurbita pepo (Zucchini)carcpeB0691
Carg20968CsGy3G008450Cucumber (Gy14) v2carcgybB0499
Carg20968MELO3C006065.2Melon (DHL92) v3.6.1carmedB0503
Carg20968CsaV3_3G008450Cucumber (Chinese Long) v3carcucB0528
Carg20968Cla97C05G081430Watermelon (97103) v2carwmbB0513
Carg20968Bhi01G000299Wax gourdcarwgoB0595
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg20968Silver-seed gourdcarcarB477
Carg20968Cucumber (Gy14) v1carcgyB0563
Carg20968Cucurbita maxima (Rimu)carcmaB0682
Carg20968Cucurbita maxima (Rimu)carcmaB0685
Carg20968Cucurbita moschata (Rifu)carcmoB0665
Carg20968Cucurbita pepo (Zucchini)carcpeB0690
Carg20968Cucurbita pepo (Zucchini)carcpeB0693
Carg20968Wild cucumber (PI 183967)carcpiB0530
Carg20968Bottle gourd (USVL1VR-Ls)carlsiB444
Carg20968Melon (DHL92) v3.5.1carmeB0496
Carg20968Melon (DHL92) v3.5.1carmeB0498
Carg20968Melon (DHL92) v3.6.1carmedB0502
Carg20968Watermelon (Charleston Gray)carwcgB0475
Carg20968Watermelon (Charleston Gray)carwcgB0476
Carg20968Watermelon (97103) v1carwmB0488