Carg20956 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20956
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	protein CURVATURE THYLAKOID 1A, chloroplastic
Location	Cucurbita_argyrosperma_scaffold_170 : 34906 .. 38181 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAGGATTTCAGATAGGGAGGCGACCAATCACAACGAATGACCTCGCCACGTGTCGATACCAGAGGCCGTCTTCCCAAAATGTGATCACGGATAAGCAAGCCATTTCTGAACATAGAAAATGGCGACAACAAAAAATCTATGCAAAAACCAGTCAGCAGGTCATCGACGGCCATTTGATTGAGGATTGCTCTCTCTTTCCGGCGCCGATTCTTTGTTTGATCGAACTCTCTGTAAAGAAATGGCAGCCACGGCCTCCCCCACAGCGGCCACCGCCGTTCTGAGACCTTCTCTGACTGCTTTTCAACCCACTCGCCGCTCCGCCTTGCCGCTCCTCCCCCCTCGACTCGGCTCCCCGTCTTTCACCACTTCTCTCAAATTCTCCTTAGGTAACTTGCTCGTAAAATCCCATTAATTTTCTTTGGGGCATTTCGTCGAACATCTTGTAGGACTTGAAAACGACAGTCTGTTTAATTTCTGATGTTTCATTTCTCGATTTGCTTTGTTACTTCCGGTATCCTCTTAGTTGATTCTTAACCGGTTGAGCATTTTCATATTGTCATGAAGAAAATTTCCTAGCGAACTGATATTCAACCGAGTATTTACTGCTCGTTGGGTTTCCAAAATACATTACATTTCATTTTGTGACCCAGCGGTGAACAGAAGCATACACTATACCGCCCGTCATGGTGTTAGATGGAAAATAGTTAATTGTTGTTCTTGTGATTTGAGCCAGAAGTTCATTTAGTTTTATACTTCATTCAGTTCTGGCAACTCAACTCCTACAAGATTGGACGCGTTGAGTTTGCTGGTAATCCGGTTAGGAACCATGACTCTCCACAATTGTATGATACTATCCACTCTGAGCATAAACTCTCGTGGCTTTGTTTTGGTTTCCCCAAAAGCCCTCATACCAATGGAGATGTATTCCTTACTTATAAACTCGTGATCAAAATCCCATAATTAACCAATGTGGGACTCCTCTCCCAACAATCCTCCTCCCGAACAAAGTACACCATAGAGCCTCTCTTGAGGTCTATGGAGCCCTCAAACAGCCTCCCATTAATCGAGACTCAACTCCTTCTCTAGAGCCCTCAAACAAAGTACACTCTTTGTTCTACACTTGAGTTACTTTTGACTACACTTTTGAGGCTCGCAACTTCTTTGTTTCACATTTGAGGATTCTATTGACGTGATTAAGTTAAAGGTATGGCTCTAATACCATGTTAGGAGTCACAGACCTCCACAATAGTATGATGTTGTCCACTTTGAGCATAAGCTCTCATAGTTTTGCTTTTGGTTTCCCCAAAAGGCCTCATACTACTGGAGATGTATTCCTTACTTATAAACCTATGATCAACCCCTTAAATTAGTCGGTGTGAAACACGATCCTCACTAAATAATGCATTGTACATCTAGGTATTTGACCATGGAGGGAGAAGGGGATTAATGTGCTGTGATTAGCATCGAGAAGTCAGATATGCAAAGTTTTCAAACCAATTTTACGCATCAGACATCTATAAATATGCTTACTTTCAAGAGAAACCTTTCTATGTTTGAATTTAGAATAAGATCTTTGATGTGCAAATGCATAGCTTTATGCATCAATATCTTAGATTTGTGTGACTTAGTTTAAGAGCACTGTTCACTTTTTGTGTAATGAAAATTCTTTTACATTGTTCATTGCTATTTCTGAAAAATGTGAATTAGATGAACTTTATTGGATTTTCCCAACCTACCATTTGGTGACAGAGTCTCGTAGATCGTCTTTGCTTCAAACCCGAGCCTCATCTTCAGAAGAATCATCTGCTGCTGATGCATCTGAGCTCTTTACAGACTTGAAAGAAAAGGTAGAACCACATGAAACATAGCAACATCCGTTATTGTCATAATTCTGAGAATGTTCTGTTATATTTCATCATTCATTTTATGGTGTTTCTGTTAGTTATACTGACTCTGTGGATGACTCTAAGATATAATTTCATCCTAATGTTTACTAGTGGGATGCCCTTGAGAACAAATCGACGGTACTCCTCTACGGAGGCGGGGCGATCGTTGCTGTTTGGCTTTCTTCAATTCTTGTTGGTGCAATCAACTCAGTTCCATTGGTAATATGATTCCTTCCATCAAACTTTTGCTTCAATATTCACTGACAGGCATCACCGTTGCTACTTGATGCTCTCTCTTGTTATATCATCTACAAAATATTGCTTTCCAATTTGTTTCTTCCCCTTGTAAAGCCATTTGACACTTACTCTCTGTCCATGTTCTCGTCAGCTTCCGAAGATCCTGGAGTTGGTAGGACTCGGATATACGGGGTGGTTCGTGTACCGATATCTACTCTTCAAGGTAAGTTTAGAAGAGAACTATGATTTGTTTCAAAAAGGTTTGCAATTTGTCATGACTTGAATAAATGCTCGATGTTTTCTCAAGTTTTACTGTGAGATCCTACGTCTTTTGGAGAGGGGAACGAAACATTTCTTATAAGGGTCTGAAAACCTCTCCCTAACAAATGCATTTTAAAACAGACAATATCTACTAGCAGTGGTCTTGAGCGGTTACATTTACCCTCCATGAAATTTCAGCATAGATTCTAAGTTTTGTTTGAGATTAAAAACTTGTAACTCTAGTTACATGTTTCTAACGAGATGGTCGGGCTAGAATAATCTGTTCCGAAGCATAATTGTATCTCGAGTCCTAAAATACCATAGAAATTCGAGTTCTTGATAGGCACTGCAACTAGATATCAGCTGAAAAAGTGTTTTTGTATGGTATTTTCCTACCTTCCTCAGTCAAGCAGAAAGGAACTAGCTGATGATATTGAAGTATTGAAGAAGAAGATCGCTGGAACAGAATAAGTAGCACGTGGTCGGGCGCCATGATCGACATGGTTTGTTCCTCTTGTTATCATTTTGTACTTGATTCTCTTTCGTTTAGAAGAGGCAATCTAAATCTAAATCTGAATCATGTAATGTGGAATAGTTTTTGCTTTGATCCCTGTAACTCATGTTCCCTTTCATTGTATGTGTAATAAGATCTGTTAAGTTCATTGCATGGAAAGTGGAAACCCCCCTTTCTCAAATTTACTTCCTTCCTGCTTCACAACAAAAATGGTGAAATTCATTGGTTGGTTCATGTTAGTTTATTTAGTTTGATTTGCGCTTATTTTTTGTTAAATGGATTTTACCGTCCCAACAATTTTATAGTTTCCTGAGGTAAATCATGCAACATCCTAAGTTCACCGCTCGTAAATATTGTCTGTTTTAGTTCATTACAAA

mRNA sequence

TAAGGATTTCAGATAGGGAGGCGACCAATCACAACGAATGACCTCGCCACGTGTCGATACCAGAGGCCGTCTTCCCAAAATGTGATCACGGATAAGCAAGCCATTTCTGAACATAGAAAATGGCGACAACAAAAAATCTATGCAAAAACCAGTCAGCAGGTCATCGACGGCCATTTGATTGAGGATTGCTCTCTCTTTCCGGCGCCGATTCTTTGTTTGATCGAACTCTCTGTAAAGAAATGGCAGCCACGGCCTCCCCCACAGCGGCCACCGCCGTTCTGAGACCTTCTCTGACTGCTTTTCAACCCACTCGCCGCTCCGCCTTGCCGCTCCTCCCCCCTCGACTCGGCTCCCCGTCTTTCACCACTTCTCTCAAATTCTCCTTAGAGTCTCGTAGATCGTCTTTGCTTCAAACCCGAGCCTCATCTTCAGAAGAATCATCTGCTGCTGATGCATCTGAGCTCTTTACAGACTTGAAAGAAAAGTGGGATGCCCTTGAGAACAAATCGACGGTACTCCTCTACGGAGGCGGGGCGATCGTTGCTGTTTGGCTTTCTTCAATTCTTGTTGGTGCAATCAACTCAGTTCCATTGCTTCCGAAGATCCTGGAGTTGGTAGGACTCGGATATACGGGGTGGTTCGTGTACCGATATCTACTCTTCAAGTCAAGCAGAAAGGAACTAGCTGATGATATTGAAGTATTGAAGAAGAAGATCGCTGGAACAGAATAAGTAGCACGTGGTCGGGCGCCATGATCGACATGGTTTGTTCCTCTTGTTATCATTTTGTACTTGATTCTCTTTCGTTTAGAAGAGGCAATCTAAATCTAAATCTGAATCATGTAATGTGGAATAGTTTTTGCTTTGATCCCTGTAACTCATGTTCCCTTTCATTGTATGTGTAATAAGATCTGTTAAGTTCATTGCATGGAAAGTGGAAACCCCCCTTTCTCAAATTTACTTCCTTCCTGCTTCACAACAAAAATGGTGAAATTCATTGGTTGGTTCATGTTAGTTTATTTAGTTTGATTTGCGCTTATTTTTTGTTAAATGGATTTTACCGTCCCAACAATTTTATAGTTTCCTGAGGTAAATCATGCAACATCCTAAGTTCACCGCTCGTAAATATTGTCTGTTTTAGTTCATTACAAA

Coding sequence (CDS)

ATGGCAGCCACGGCCTCCCCCACAGCGGCCACCGCCGTTCTGAGACCTTCTCTGACTGCTTTTCAACCCACTCGCCGCTCCGCCTTGCCGCTCCTCCCCCCTCGACTCGGCTCCCCGTCTTTCACCACTTCTCTCAAATTCTCCTTAGAGTCTCGTAGATCGTCTTTGCTTCAAACCCGAGCCTCATCTTCAGAAGAATCATCTGCTGCTGATGCATCTGAGCTCTTTACAGACTTGAAAGAAAAGTGGGATGCCCTTGAGAACAAATCGACGGTACTCCTCTACGGAGGCGGGGCGATCGTTGCTGTTTGGCTTTCTTCAATTCTTGTTGGTGCAATCAACTCAGTTCCATTGCTTCCGAAGATCCTGGAGTTGGTAGGACTCGGATATACGGGGTGGTTCGTGTACCGATATCTACTCTTCAAGTCAAGCAGAAAGGAACTAGCTGATGATATTGAAGTATTGAAGAAGAAGATCGCTGGAACAGAATAA

Protein sequence

MAATASPTAATAVLRPSLTAFQPTRRSALPLLPPRLGSPSFTTSLKFSLESRRSSLLQTRASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLPKILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGTE

Homology

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BLAST of Carg20956 vs. NCBI nr
Match: XP_022924752.1 (protein CURVATURE THYLAKOID 1A, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 297.7 bits (761), Expect = 2.3e-77
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MAATASPTAATAVLRPSLTAFQPTRRSALPLLPPRLGSPSFTTSLKFSLESRRSSLLQTR 60
           MAATASPTAATAVLRPSLTAFQPTRRSALPLLPPRLGSPSFTTSLKFSLESRRSSLLQTR
Sbjct: 1   MAATASPTAATAVLRPSLTAFQPTRRSALPLLPPRLGSPSFTTSLKFSLESRRSSLLQTR 60

Query: 61  ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLP 120
           ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLP
Sbjct: 61  ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLP 120

Query: 121 KILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGTE 164
           KILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGTE
Sbjct: 121 KILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGTE 163

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BLAST of Carg20956 vs. NCBI nr
Match: XP_023529055.1 (protein CURVATURE THYLAKOID 1A, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 295.4 bits (755), Expect = 1.2e-76
Identity = 162/163 (99.39%), Postives = 162/163 (99.39%), Query Frame = 0


Query: 1   MAATASPTAATAVLRPSLTAFQPTRRSALPLLPPRLGSPSFTTSLKFSLESRRSSLLQTR 60
           MAATASPTAATAVLRPSLTAFQPTRRSALPLLPPRLGSPSF TSLKFSLESRRSSLLQTR
Sbjct: 1   MAATASPTAATAVLRPSLTAFQPTRRSALPLLPPRLGSPSFPTSLKFSLESRRSSLLQTR 60

Query: 61  ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLP 120
           ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLP
Sbjct: 61  ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLP 120

Query: 121 KILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGTE 164
           KILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGTE
Sbjct: 121 KILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGTE 163

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BLAST of Carg20956 vs. NCBI nr
Match: XP_022980149.1 (protein CURVATURE THYLAKOID 1A, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 294.7 bits (753), Expect = 2.0e-76
Identity = 161/163 (98.77%), Postives = 162/163 (99.39%), Query Frame = 0


Query: 1   MAATASPTAATAVLRPSLTAFQPTRRSALPLLPPRLGSPSFTTSLKFSLESRRSSLLQTR 60
           MAATASPTAATAVLRPSLTAFQPTRRSALPLLPPR+GSPSF TSLKFSLESRRSSLLQTR
Sbjct: 1   MAATASPTAATAVLRPSLTAFQPTRRSALPLLPPRIGSPSFPTSLKFSLESRRSSLLQTR 60

Query: 61  ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLP 120
           ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLP
Sbjct: 61  ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLP 120

Query: 121 KILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGTE 164
           KILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGTE
Sbjct: 121 KILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGTE 163

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BLAST of Carg20956 vs. NCBI nr
Match: XP_023539167.1 (protein CURVATURE THYLAKOID 1A, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 282.7 bits (722), Expect = 7.8e-73
Identity = 155/163 (95.09%), Postives = 157/163 (96.32%), Query Frame = 0


Query: 1   MAATASPTAATAVLRPSLTAFQPTRRSALPLLPPRLGSPSFTTSLKFSLESRRSSLLQTR 60
           MAATASPTAATAVLRPSL A QPTRRSA+PLLPPRLGSPSF TSLK SLESRRSSLLQTR
Sbjct: 1   MAATASPTAATAVLRPSLAAPQPTRRSAMPLLPPRLGSPSFPTSLKISLESRRSSLLQTR 60

Query: 61  ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLP 120
           ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGA+NSVPLLP
Sbjct: 61  ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAVNSVPLLP 120

Query: 121 KILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGTE 164
           KILELVGLGYTGWFVYRYLLFKSSRKELADDIE LKKKIAG E
Sbjct: 121 KILELVGLGYTGWFVYRYLLFKSSRKELADDIEALKKKIAGAE 163

[Close]

BLAST of Carg20956 vs. NCBI nr
Match: XP_022933676.1 (protein CURVATURE THYLAKOID 1A, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 280.4 bits (716), Expect = 3.9e-72
Identity = 154/163 (94.48%), Postives = 156/163 (95.71%), Query Frame = 0


Query: 1   MAATASPTAATAVLRPSLTAFQPTRRSALPLLPPRLGSPSFTTSLKFSLESRRSSLLQTR 60
           MAATASPTAA AVLRPSL A QPTRRSA+PLLPPRLGSPSF TSLK SLESRRSSLLQTR
Sbjct: 1   MAATASPTAAIAVLRPSLAAPQPTRRSAMPLLPPRLGSPSFPTSLKISLESRRSSLLQTR 60

Query: 61  ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLP 120
           ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGA+NSVPLLP
Sbjct: 61  ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAVNSVPLLP 120

Query: 121 KILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGTE 164
           KILELVGLGYTGWFVYRYLLFKSSRKELADDIE LKKKIAG E
Sbjct: 121 KILELVGLGYTGWFVYRYLLFKSSRKELADDIEALKKKIAGAE 163

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BLAST of Carg20956 vs. TAIR10
Match: AT4G01150.1 (unknown protein)

HSP 1 Score: 191.4 bits (485), Expect = 4.3e-49
Identity = 113/166 (68.07%), Postives = 134/166 (80.72%), Query Frame = 0


Query: 1   MAATASPTAATAVLRPSLTAFQPTRRSALPLLPPR-LGSPSFTTSLKFSLES--RRSSLL 60
           MA + + +++ AV+ P + A   TR SA+P LPPR  G  SFT  LK    +  ++  LL
Sbjct: 1   MAISVAASSSMAVMVPRVPAVS-TRCSAVPYLPPRSFGRSSFTVPLKLVSGNGLQKVELL 60

Query: 61  QTRASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVP 120
           +TRA SSEE+S+ D +EL TDLKEKWD LENKSTVL+YGGGAIVAVWLSSI+VGAINSVP
Sbjct: 61  KTRA-SSEETSSIDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVP 120

Query: 121 LLPKILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGTE 164
           LLPK++ELVGLGYTGWFVYRYLLFKSSRKELA+DIE LKKKIAG+E
Sbjct: 121 LLPKVMELVGLGYTGWFVYRYLLFKSSRKELAEDIESLKKKIAGSE 164

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BLAST of Carg20956 vs. TAIR10
Match: AT4G38100.1 (unknown protein)

HSP 1 Score: 84.7 bits (208), Expect = 5.6e-17
Identity = 50/124 (40.32%), Postives = 79/124 (63.71%), Query Frame = 0


Query: 46  KFSLESRRSSLL--QTRASSSEESSAAD----ASELFTDLKEKWDALENKSTVLLYGGGA 105
           +F +E R   ++  + + S+SE   A D    A E   D+K   D      ++LLYG GA
Sbjct: 71  EFGVEDRDGVVVAAEEKNSNSEAPQAEDEETQALEFLNDIKLDSD---KTYSILLYGSGA 130

Query: 106 IVAVWLSSILVGAINSVPLLPKILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKI 164
           IVA++L+S +V ++ ++PL PK++E+VGLGYT WF  RYLLFK +R+EL   +  +KK++
Sbjct: 131 IVALYLTSAIVSSLEAIPLFPKLMEVVGLGYTLWFTTRYLLFKRNREELKTKVSEIKKQV 190

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BLAST of Carg20956 vs. TAIR10
Match: AT2G46820.1 (photosystem I P subunit)

HSP 1 Score: 67.4 bits (163), Expect = 9.3e-12
Identity = 42/160 (26.25%), Postives = 88/160 (55.00%), Query Frame = 0


Query: 3   ATASPTAATAVLRPSLTAFQPTRRSALPLLPPRLGSPSFTTSLKFSLESRRSSLLQTRAS 62
           A+AS ++ + +  P+L     TR +          + ++   +  ++ +R ++ +    +
Sbjct: 23  ASASASSPSCISLPTLPIQSHTRAAK---------ATAYCRKIVRNVVTRATTEVGEAPA 82

Query: 63  SSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLPKI 122
           ++ E+   +  E+    +E W+ +++K  +       +VA+W S+ ++ AI+ +PL+P +
Sbjct: 83  TTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGV 142

Query: 123 LELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGT 163
           LELVG+GYTGWF Y+ L+FK  R+ L + ++   K I G+
Sbjct: 143 LELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILGS 173

[Close]

BLAST of Carg20956 vs. TAIR10
Match: AT1G52220.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 65.1 bits (157), Expect = 4.6e-11
Identity = 39/113 (34.51%), Postives = 67/113 (59.29%), Query Frame = 0


Query: 48  SLESRRSSLLQTRASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSS 107
           SL    SS+     +S E S ++   ++ + ++  WD  E++  ++  G   IVA+W S 
Sbjct: 42  SLTRNPSSISLMVKASGESSDSSTDLDVVSTIQNVWDKSEDRLGLIGLGFAGIVALWASL 101

Query: 108 ILVGAINSVPLLPKILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIA 161
            L+ AI+ +P++    ELVG+ ++ WF YRYLLFK  R+EL+   +++KK +A
Sbjct: 102 NLITAIDKLPVISSGFELVGILFSTWFTYRYLLFKPDRQELS---KIVKKSVA 151

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BLAST of Carg20956 vs. Swiss-Prot
Match: sp|O04616|CUT1A_ARATH (Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1A PE=1 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 7.7e-48
Identity = 113/166 (68.07%), Postives = 134/166 (80.72%), Query Frame = 0


Query: 1   MAATASPTAATAVLRPSLTAFQPTRRSALPLLPPR-LGSPSFTTSLKFSLES--RRSSLL 60
           MA + + +++ AV+ P + A   TR SA+P LPPR  G  SFT  LK    +  ++  LL
Sbjct: 1   MAISVAASSSMAVMVPRVPAVS-TRCSAVPYLPPRSFGRSSFTVPLKLVSGNGLQKVELL 60

Query: 61  QTRASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVP 120
           +TRA SSEE+S+ D +EL TDLKEKWD LENKSTVL+YGGGAIVAVWLSSI+VGAINSVP
Sbjct: 61  KTRA-SSEETSSIDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVP 120

Query: 121 LLPKILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGTE 164
           LLPK++ELVGLGYTGWFVYRYLLFKSSRKELA+DIE LKKKIAG+E
Sbjct: 121 LLPKVMELVGLGYTGWFVYRYLLFKSSRKELAEDIESLKKKIAGSE 164

[Close]

BLAST of Carg20956 vs. Swiss-Prot
Match: sp|Q8LDD3|CUT1D_ARATH (Protein CURVATURE THYLAKOID 1D, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1D PE=1 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.0e-15
Identity = 50/124 (40.32%), Postives = 79/124 (63.71%), Query Frame = 0


Query: 46  KFSLESRRSSLL--QTRASSSEESSAAD----ASELFTDLKEKWDALENKSTVLLYGGGA 105
           +F +E R   ++  + + S+SE   A D    A E   D+K   D      ++LLYG GA
Sbjct: 71  EFGVEDRDGVVVAAEEKNSNSEAPQAEDEETQALEFLNDIKLDSD---KTYSILLYGSGA 130

Query: 106 IVAVWLSSILVGAINSVPLLPKILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKI 164
           IVA++L+S +V ++ ++PL PK++E+VGLGYT WF  RYLLFK +R+EL   +  +KK++
Sbjct: 131 IVALYLTSAIVSSLEAIPLFPKLMEVVGLGYTLWFTTRYLLFKRNREELKTKVSEIKKQV 190

[Close]

BLAST of Carg20956 vs. Swiss-Prot
Match: sp|Q8LCA1|CUT1B_ARATH (Protein CURVATURE THYLAKOID 1B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1B PE=1 SV=2)

HSP 1 Score: 67.4 bits (163), Expect = 1.7e-10
Identity = 42/160 (26.25%), Postives = 88/160 (55.00%), Query Frame = 0


Query: 3   ATASPTAATAVLRPSLTAFQPTRRSALPLLPPRLGSPSFTTSLKFSLESRRSSLLQTRAS 62
           A+AS ++ + +  P+L     TR +          + ++   +  ++ +R ++ +    +
Sbjct: 23  ASASASSPSCISLPTLPIQSHTRAAK---------ATAYCRKIVRNVVTRATTEVGEAPA 82

Query: 63  SSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLPKI 122
           ++ E+   +  E+    +E W+ +++K  +       +VA+W S+ ++ AI+ +PL+P +
Sbjct: 83  TTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGV 142

Query: 123 LELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGT 163
           LELVG+GYTGWF Y+ L+FK  R+ L + ++   K I G+
Sbjct: 143 LELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILGS 173

[Close]

BLAST of Carg20956 vs. Swiss-Prot
Match: sp|Q9M812|CUT1C_ARATH (Protein CURVATURE THYLAKOID 1C, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1C PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.3e-10
Identity = 39/113 (34.51%), Postives = 67/113 (59.29%), Query Frame = 0


Query: 48  SLESRRSSLLQTRASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSS 107
           SL    SS+     +S E S ++   ++ + ++  WD  E++  ++  G   IVA+W S 
Sbjct: 42  SLTRNPSSISLMVKASGESSDSSTDLDVVSTIQNVWDKSEDRLGLIGLGFAGIVALWASL 101

Query: 108 ILVGAINSVPLLPKILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIA 161
            L+ AI+ +P++    ELVG+ ++ WF YRYLLFK  R+EL+   +++KK +A
Sbjct: 102 NLITAIDKLPVISSGFELVGILFSTWFTYRYLLFKPDRQELS---KIVKKSVA 151

[Close]

BLAST of Carg20956 vs. Swiss-Prot
Match: sp|Q119Z5|SYE_TRIEI (Glutamate--tRNA ligase OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=gltX PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.8e-08
Identity = 30/70 (42.86%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 94  LYGGGAIVAVWLS--SILVGAINSVPLLPKILELVGLGYTGWFVYRYLLFKSSRKELADD 153
           L+G  A+V +  +  ++++ A++ +P+L  I EL+G+ Y  WFVYRYLL +S+R+EL D 
Sbjct: 809 LFGWLALVILTFTFMAVVIEALDGIPILSIIFELIGVIYLVWFVYRYLLKRSNRQELLDK 868

Query: 154 IEVLKKKIAG 162
           IE +K++I G
Sbjct: 869 IENIKREIFG 878

[Close]

BLAST of Carg20956 vs. TrEMBL
Match: tr|A0A1S3AVS8|A0A1S3AVS8_CUCME (protein CURVATURE THYLAKOID 1A, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483215 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 7.4e-72
Identity = 155/164 (94.51%), Postives = 158/164 (96.34%), Query Frame = 0


Query: 1   MAATASPTAATAVLRPSLTAFQPTRRSALPLLPPRLGSP-SFTTSLKFSLESRRSSLLQT 60
           MAATASPTAATAVLRPSL A QPTRRS LPLLPPR+GSP SF+TSLK SL+SRRSSLLQT
Sbjct: 1   MAATASPTAATAVLRPSLAASQPTRRSVLPLLPPRVGSPSSFSTSLKLSLDSRRSSLLQT 60

Query: 61  RASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLL 120
           RASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLL
Sbjct: 61  RASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLL 120

Query: 121 PKILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGTE 164
           PKILELVGLGYTGWFVYRYLLFKSSRKELADDIE LKKKIAGTE
Sbjct: 121 PKILELVGLGYTGWFVYRYLLFKSSRKELADDIEALKKKIAGTE 164

[Close]

BLAST of Carg20956 vs. TrEMBL
Match: tr|E5GCH0|E5GCH0_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 7.4e-72
Identity = 155/164 (94.51%), Postives = 158/164 (96.34%), Query Frame = 0


Query: 1   MAATASPTAATAVLRPSLTAFQPTRRSALPLLPPRLGSP-SFTTSLKFSLESRRSSLLQT 60
           MAATASPTAATAVLRPSL A QPTRRS LPLLPPR+GSP SF+TSLK SL+SRRSSLLQT
Sbjct: 1   MAATASPTAATAVLRPSLAASQPTRRSVLPLLPPRVGSPSSFSTSLKLSLDSRRSSLLQT 60

Query: 61  RASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLL 120
           RASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLL
Sbjct: 61  RASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLL 120

Query: 121 PKILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGTE 164
           PKILELVGLGYTGWFVYRYLLFKSSRKELADDIE LKKKIAGTE
Sbjct: 121 PKILELVGLGYTGWFVYRYLLFKSSRKELADDIEALKKKIAGTE 164

[Close]

BLAST of Carg20956 vs. TrEMBL
Match: tr|A0A0A0L603|A0A0A0L603_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119840 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 1.1e-70
Identity = 154/164 (93.90%), Postives = 155/164 (94.51%), Query Frame = 0


Query: 1   MAATASPTAATAVLRPSLTAFQPTRRSALPLLPPRLGSP-SFTTSLKFSLESRRSSLLQT 60
           MAATASPTAATAVLRPSL A QPTR S LPLLPPR GSP SF+TSLKFSLESRRS LLQT
Sbjct: 1   MAATASPTAATAVLRPSLAASQPTRLSVLPLLPPRFGSPSSFSTSLKFSLESRRSFLLQT 60

Query: 61  RASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLL 120
           RASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLL
Sbjct: 61  RASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLL 120

Query: 121 PKILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGTE 164
           PKILELVGLGYTGWFVYRYLLFKSSRKELADDIE LKKKIAG E
Sbjct: 121 PKILELVGLGYTGWFVYRYLLFKSSRKELADDIEALKKKIAGAE 164

[Close]

BLAST of Carg20956 vs. TrEMBL
Match: tr|A0A2N9F4W6|A0A2N9F4W6_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS9803 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 9.1e-54
Identity = 129/162 (79.63%), Postives = 135/162 (83.33%), Query Frame = 0


Query: 5   ASPTAATAVLRPSL-TAFQPTRRSALPLLPPRLGSPSFTTSLKFSLESRRSSL--LQTRA 64
           A+  A TAVL P L T    TR SALP LPPR  S SF  S K S ESRRSSL  ++ RA
Sbjct: 8   ATAYANTAVLVPRLPTTKLTTRCSALPCLPPRFSSTSFLASTKHSAESRRSSLSQIRLRA 67

Query: 65  SSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLPK 124
           SSSEE+S  D +ELFTDLKEKWDA+ENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLPK
Sbjct: 68  SSSEETSTIDPNELFTDLKEKWDAIENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLPK 127

Query: 125 ILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGTE 164
           ILELVGLGYTGWFVYRYLLFKSSRKELA DIEVLKKKIAGTE
Sbjct: 128 ILELVGLGYTGWFVYRYLLFKSSRKELATDIEVLKKKIAGTE 169

[Close]

BLAST of Carg20956 vs. TrEMBL
Match: tr|A0A061E0L7|A0A061E0L7_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_005215 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 2.0e-53
Identity = 123/163 (75.46%), Postives = 141/163 (86.50%), Query Frame = 0


Query: 2   AATASPTAATAVLRPSL-TAFQPTRRSALPLLPPRLGSPSFTTSLKFSLESRRSSLLQTR 61
           AA +S  AATAVL P + TA + TR SALPLLPPR+ + SF++S+K   ESRR SLLQT+
Sbjct: 3   AAASSSMAATAVLIPRVPTALRTTRCSALPLLPPRVSTASFSSSVKLIPESRRFSLLQTK 62

Query: 62  ASSSEESSAADASELFTDLKEKWDALENKSTVLLYGGGAIVAVWLSSILVGAINSVPLLP 121
           A  SEE+++ DA ELFTDLKEKW+ +ENKSTVL+YGGGAIVAVWLS+ILVGAINSVPLLP
Sbjct: 63  A--SEETTSVDAGELFTDLKEKWEKIENKSTVLIYGGGAIVAVWLSAILVGAINSVPLLP 122

Query: 122 KILELVGLGYTGWFVYRYLLFKSSRKELADDIEVLKKKIAGTE 164
           KI+ELVGLGYTGWFVYRYLLFKSSRKELA DIE LKKKI+GTE
Sbjct: 123 KIMELVGLGYTGWFVYRYLLFKSSRKELATDIEALKKKISGTE 163

The following BLAST results are available for this feature:

BLAST of Carg20956 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022924752.1	2.3e-77	100.00	protein CURVATURE THYLAKOID 1A, chloroplastic-like [Cucurbita moschata]	[more]
XP_023529055.1	1.2e-76	99.39	protein CURVATURE THYLAKOID 1A, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022980149.1	2.0e-76	98.77	protein CURVATURE THYLAKOID 1A, chloroplastic-like [Cucurbita maxima]	[more]
XP_023539167.1	7.8e-73	95.09	protein CURVATURE THYLAKOID 1A, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022933676.1	3.9e-72	94.48	protein CURVATURE THYLAKOID 1A, chloroplastic-like [Cucurbita moschata]	[more]

BLAST of Carg20956 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G01150.1	4.3e-49	68.07	unknown protein	[more]
AT4G38100.1	5.6e-17	40.32	unknown protein	[more]
AT2G46820.1	9.3e-12	26.25	photosystem I P subunit	[more]
AT1G52220.1	4.6e-11	34.51	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of Carg20956 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O04616\|CUT1A_ARATH	7.7e-48	68.07	Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
sp\|Q8LDD3\|CUT1D_ARATH	1.0e-15	40.32	Protein CURVATURE THYLAKOID 1D, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
sp\|Q8LCA1\|CUT1B_ARATH	1.7e-10	26.25	Protein CURVATURE THYLAKOID 1B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
sp\|Q9M812\|CUT1C_ARATH	8.3e-10	34.51	Protein CURVATURE THYLAKOID 1C, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
sp\|Q119Z5\|SYE_TRIEI	7.8e-08	42.86	Glutamate--tRNA ligase OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=...	[more]

BLAST of Carg20956 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AVS8\|A0A1S3AVS8_CUCME	7.4e-72	94.51	protein CURVATURE THYLAKOID 1A, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
tr\|E5GCH0\|E5GCH0_CUCME	7.4e-72	94.51	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A0A0L603\|A0A0A0L603_CUCSA	1.1e-70	93.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119840 PE=4 SV=1	[more]
tr\|A0A2N9F4W6\|A0A2N9F4W6_FAGSY	9.1e-54	79.63	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS9803 PE=4 SV=1	[more]
tr\|A0A061E0L7\|A0A061E0L7_THECC	2.0e-53	75.46	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_005215 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0009579	thylakoid

Vocabulary: **INTERPRO**
Term	Definition
IPR033344	CURT1
IPR025564	CAAD_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20956-RA	Carg20956-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025564	Cyanobacterial aminoacyl-tRNA synthetase, CAAD domain	PFAM	PF14159	CAAD	coord: 78..161 e-value: 1.3E-30 score: 104.9
None	No IPR available	PANTHER	PTHR33222:SF4	PROTEIN CURVATURE THYLAKOID 1A, CHLOROPLASTIC	coord: 23..163
IPR033344	Protein CURVATURE THYLAKOID 1	PANTHER	PTHR33222	FAMILY NOT NAMED	coord: 23..163

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg20956	Cla021183	Watermelon (97103) v1	carwmB0487
Carg20956	Csa3G119840	Cucumber (Chinese Long) v2	carcuB0522
Carg20956	MELO3C006053	Melon (DHL92) v3.5.1	carmeB0497
Carg20956	ClCG05G001020	Watermelon (Charleston Gray)	carwcgB0474
Carg20956	CSPI03G08200	Wild cucumber (PI 183967)	carcpiB0529
Carg20956	Cucsa.258950	Cucumber (Gy14) v1	carcgyB0564
Carg20956	CmaCh06G010380	Cucurbita maxima (Rimu)	carcmaB0685
Carg20956	CmoCh06G010620	Cucurbita moschata (Rifu)	carcmoB0665
Carg20956	CmoCh14G021500	Cucurbita moschata (Rifu)	carcmoB0664
Carg20956	Cp4.1LG03g16400	Cucurbita pepo (Zucchini)	carcpeB0691
Carg20956	Cp4.1LG08g01120	Cucurbita pepo (Zucchini)	carcpeB0693
Carg20956	CsGy3G008340	Cucumber (Gy14) v2	carcgybB0499
Carg20956	MELO3C006053.2	Melon (DHL92) v3.6.1	carmedB0503
Carg20956	CsaV3_3G008350	Cucumber (Chinese Long) v3	carcucB0528
Carg20956	Cla97C05G081290	Watermelon (97103) v2	carwmbB0513
Carg20956	Bhi01G000319	Wax gourd	carwgoB0595

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg20956	Carg20877	Silver-seed gourd	carcarB477

The following block(s) are covering this gene:


Gene	Organism	Block
Carg20956	Watermelon (Charleston Gray)	carwcgB0476
Carg20956	Cucumber (Gy14) v1	carcgyB0563
Carg20956	Cucurbita maxima (Rimu)	carcmaB0683
Carg20956	Wild cucumber (PI 183967)	carcpiB0530
Carg20956	Bottle gourd (USVL1VR-Ls)	carlsiB444
Carg20956	Bottle gourd (USVL1VR-Ls)	carlsiB445
Carg20956	Melon (DHL92) v3.5.1	carmeB0496
Carg20956	Melon (DHL92) v3.6.1	carmedB0502